Query         gi|254780313|ref|YP_003064726.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 227
No_of_seqs    152 out of 1749
Neff          6.2 
Searched_HMMs 39220
Date          Sun May 29 16:04:56 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780313.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PRK11188 rrmJ 23S rRNA methylt 100.0       0       0  547.9  22.6  207   17-226     1-208 (209)
  2 TIGR00438 rrmJ ribosomal RNA l 100.0       0       0  520.0  17.1  187   36-225     1-192 (192)
  3 COG0293 FtsJ 23S rRNA methylas 100.0       0       0  474.7  21.3  202   23-227     1-203 (205)
  4 KOG4589 consensus              100.0       0       0  472.4  18.2  215   10-227    12-228 (232)
  5 KOG1099 consensus              100.0       0       0  403.3  14.2  193   34-226     8-206 (294)
  6 pfam01728 FtsJ FtsJ-like methy 100.0       0       0  383.7  19.3  175   47-225     1-176 (176)
  7 KOG1098 consensus              100.0       0       0  386.6  11.3  191   33-226    10-201 (780)
  8 KOG3673 consensus               99.9 5.8E-25 1.5E-29  176.9   8.8  193   34-227   207-446 (845)
  9 KOG3674 consensus               99.9 4.8E-23 1.2E-27  164.9   9.8  184   43-226   105-319 (696)
 10 PRK11873 arsM arsenite S-adeno  99.3   5E-12 1.3E-16   95.8   7.8  129   63-212    69-231 (258)
 11 PRK11933 yebU rRNA (cytosine-C  99.3 3.9E-11 9.9E-16   90.2  12.2  130   65-205   111-267 (471)
 12 COG1189 Predicted rRNA methyla  99.3 5.5E-12 1.4E-16   95.6   7.5  157   43-223    55-241 (245)
 13 PRK11760 putative RNA 2'-O-rib  99.3 1.2E-11 3.1E-16   93.4   6.4  131   43-201   179-327 (356)
 14 PRK01683 trans-aconitate 2-met  99.2 1.7E-10 4.3E-15   86.3   9.5  116   42-184    10-131 (252)
 15 PRK10901 16S rRNA methyltransf  99.2 1.9E-10 4.9E-15   85.9   9.8  123   66-199   244-392 (428)
 16 COG0144 Sun tRNA and rRNA cyto  99.1 9.8E-10 2.5E-14   81.5  11.6  127   65-200   154-308 (355)
 17 PRK08317 hypothetical protein;  99.1   2E-10   5E-15   85.8   7.8   97   65-182    17-123 (241)
 18 pfam01189 Nol1_Nop2_Fmu NOL1/N  99.1   2E-09   5E-14   79.6  11.4  126   65-200    82-234 (277)
 19 TIGR00446 nop2p NOL1/NOP2/sun   99.0 2.1E-09 5.4E-14   79.4   9.5  129   67-206    77-238 (284)
 20 pfam01209 Ubie_methyltran ubiE  99.0 1.9E-09 4.7E-14   79.7   7.9  116   65-201    45-171 (233)
 21 PRK00216 ubiE ubiquinone/menaq  99.0 2.8E-09 7.2E-14   78.6   8.5  103   65-188    49-163 (239)
 22 TIGR00563 rsmB ribosomal RNA s  98.9 2.8E-09 7.1E-14   78.6   6.7  126   66-197   270-425 (487)
 23 TIGR00478 tly hemolysin A; Int  98.9 2.3E-09 5.9E-14   79.1   4.3  101   36-144    44-155 (240)
 24 pfam05175 MTS Methyltransferas  98.8 5.6E-08 1.4E-12   70.5  10.8  119   66-207    30-161 (170)
 25 PRK10258 biotin biosynthesis p  98.8 3.5E-08 8.8E-13   71.8   9.1  141   37-208    19-167 (251)
 26 COG2230 Cfa Cyclopropane fatty  98.8 9.1E-08 2.3E-12   69.1  10.3  112   52-188    58-181 (283)
 27 PTZ00098 phosphoethanolamine N  98.8 5.5E-08 1.4E-12   70.5   9.0  132   45-199    30-176 (263)
 28 cd02440 AdoMet_MTases S-adenos  98.7 4.1E-08   1E-12   71.3   7.3   94   70-184     1-105 (107)
 29 KOG1122 consensus               98.7 8.3E-08 2.1E-12   69.4   8.7  129   66-205   240-395 (460)
 30 COG2226 UbiE Methylase involve  98.7 8.1E-08 2.1E-12   69.5   8.4  110   66-197    50-170 (238)
 31 pfam02353 CMAS Cyclopropane-fa  98.7 2.2E-07 5.6E-12   66.7   9.7  109   53-186    49-169 (273)
 32 TIGR02072 BioC biotin biosynth  98.6 5.8E-08 1.5E-12   70.4   5.7  137   36-197     7-161 (272)
 33 KOG2198 consensus               98.6 8.9E-08 2.3E-12   69.2   6.6  153   65-219   153-340 (375)
 34 smart00828 PKS_MT Methyltransf  98.5   3E-07 7.7E-12   65.9   6.8   94   69-185     1-106 (224)
 35 COG1092 Predicted SAM-dependen  98.5 3.8E-06 9.6E-11   59.0  12.3  123   67-199   217-353 (393)
 36 pfam06460 NSP13 Coronavirus NS  98.5 1.9E-06 4.9E-11   60.8  10.7  145   63-225    57-210 (300)
 37 pfam07021 MetW Methionine bios  98.5 2.9E-07 7.3E-12   66.0   6.1   77   50-141     1-81  (193)
 38 TIGR01934 MenG_MenH_UbiE ubiqu  98.5   9E-07 2.3E-11   62.9   8.5  137   46-204    26-183 (242)
 39 COG2933 Predicted SAM-dependen  98.4 3.6E-07 9.3E-12   65.4   5.4   86   47-145   184-280 (358)
 40 PRK11705 cyclopropane fatty ac  98.4 3.7E-06 9.3E-11   59.1   9.3  109   51-184   152-268 (383)
 41 PRK05134 3-demethylubiquinone-  98.3 2.9E-06 7.4E-11   59.7   7.7   96   66-184    47-152 (233)
 42 TIGR03534 RF_mod_HemK protein-  98.3 1.9E-05 4.9E-10   54.6  11.1  133   67-214    87-248 (251)
 43 PRK09328 N5-glutamine S-adenos  98.2 3.8E-05 9.6E-10   52.7  12.0  140   67-225   109-276 (277)
 44 pfam03291 Pox_MCEL mRNA cappin  98.2   4E-05   1E-09   52.6  10.6  136   27-199    43-200 (327)
 45 KOG1271 consensus               98.2 8.3E-06 2.1E-10   56.8   7.0  129   61-207    61-205 (227)
 46 pfam08241 Methyltransf_11 Meth  98.1 3.8E-06 9.6E-11   59.0   4.9   87   72-181     1-95  (95)
 47 TIGR03533 L3_gln_methyl protei  98.1 5.5E-05 1.4E-09   51.7  10.8  119   67-204   121-266 (284)
 48 pfam01269 Fibrillarin Fibrilla  98.1 3.6E-05 9.1E-10   52.9   9.5  123   64-206    70-211 (229)
 49 PRK00377 cbiT cobalt-precorrin  98.1 7.4E-05 1.9E-09   50.9  11.0  126   65-213    38-175 (198)
 50 KOG1975 consensus               98.1 1.4E-05 3.5E-10   55.5   6.9  149   34-199    76-250 (389)
 51 PRK07580 Mg-protoporphyrin IX   98.1 3.6E-05 9.1E-10   52.9   9.0  107   67-200    63-181 (230)
 52 PRK07402 precorrin-6B methylas  98.1 0.00011 2.8E-09   49.8  11.1  127   63-215    37-175 (196)
 53 PRK11207 tellurite resistance   98.0 3.6E-05 9.2E-10   52.9   8.5  120   63-206    27-166 (198)
 54 COG4106 Tam Trans-aconitate me  98.0 1.3E-05 3.4E-10   55.6   5.9  119   43-188    10-134 (257)
 55 pfam01135 PCMT Protein-L-isoas  98.0 2.3E-05 5.8E-10   54.1   7.0   92   65-183    71-173 (205)
 56 PRK11805 N5-glutamine S-adenos  98.0 0.00015 3.8E-09   49.0  11.2  134   68-221   134-294 (307)
 57 PRK11036 putative metallothion  98.0 4.2E-05 1.1E-09   52.5   8.3  112   68-203    45-168 (256)
 58 PTZ00146 fibrillarin; Provisio  98.0 7.6E-05 1.9E-09   50.8   9.3   99   65-183   133-240 (296)
 59 PRK04266 fibrillarin; Provisio  98.0 6.3E-05 1.6E-09   51.3   8.9  121   65-206    70-209 (226)
 60 pfam10672 Methyltrans_SAM S-ad  98.0 0.00018 4.7E-09   48.4  10.9  125   66-205   122-261 (286)
 61 COG4123 Predicted O-methyltran  97.9 4.6E-05 1.2E-09   52.2   7.5  140   65-214    42-203 (248)
 62 pfam08704 GCD14 tRNA methyltra  97.9 0.00015 3.8E-09   48.9   9.6  129   47-206    87-232 (309)
 63 KOG1596 consensus               97.9 2.5E-05 6.4E-10   53.8   5.3  100   65-184   154-262 (317)
 64 COG2519 GCD14 tRNA(1-methylade  97.9  0.0001 2.6E-09   50.0   8.3  138   47-216    79-238 (256)
 65 PRK09329 N5-glutamine S-adenos  97.9 0.00054 1.4E-08   45.5  11.8  137   67-223   109-272 (285)
 66 PRK09489 rsmC 16S ribosomal RN  97.9  0.0003 7.7E-09   47.1  10.4  117   67-206   196-323 (342)
 67 TIGR01983 UbiG ubiquinone bios  97.8 3.1E-05   8E-10   53.2   5.1  113   54-184    68-197 (275)
 68 PRK00517 prmA ribosomal protei  97.8 0.00075 1.9E-08   44.6  11.7  114   64-206   159-285 (298)
 69 COG2813 RsmC 16S RNA G1207 met  97.8 0.00053 1.3E-08   45.5  10.9  118   68-207   159-287 (300)
 70 COG2264 PrmA Ribosomal protein  97.8 0.00016   4E-09   48.8   7.8  125   64-208   159-289 (300)
 71 COG1041 Predicted DNA modifica  97.8 0.00049 1.3E-08   45.7  10.2  147   48-222   185-345 (347)
 72 COG2227 UbiG 2-polyprenyl-3-me  97.8  0.0001 2.6E-09   50.0   6.7  102   58-184    52-162 (243)
 73 pfam02475 Met_10 Met-10+ like-  97.7 0.00015 3.8E-09   49.0   7.3   90   63-179    96-197 (199)
 74 pfam08242 Methyltransf_12 Meth  97.7 5.1E-05 1.3E-09   51.9   4.5   87   72-179     1-98  (98)
 75 KOG1540 consensus               97.7 0.00057 1.5E-08   45.3   9.7  140   46-203    64-234 (296)
 76 TIGR02081 metW methionine bios  97.7 5.8E-05 1.5E-09   51.6   4.3   75   62-141     8-89  (205)
 77 COG2890 HemK Methylase of poly  97.7 0.00057 1.5E-08   45.3   9.3  129   70-213   113-269 (280)
 78 pfam06325 PrmA Ribosomal prote  97.7 4.8E-05 1.2E-09   52.1   3.8  119   64-205   157-280 (294)
 79 PRK04457 spermidine synthase;   97.6  0.0027 6.9E-08   41.1  12.6  130   64-210    62-206 (262)
 80 PRK13942 protein-L-isoaspartat  97.6 0.00021 5.3E-09   48.1   6.7   92   65-183    74-176 (214)
 81 pfam04989 CmcI Cephalosporin h  97.6 0.00097 2.5E-08   43.9   9.8  104   67-182    32-142 (202)
 82 PRK01544 bifunctional N5-gluta  97.6 0.00075 1.9E-08   44.6   9.2  103   67-183   135-266 (503)
 83 PRK11088 rrmA 23S rRNA methylt  97.6 0.00043 1.1E-08   46.1   7.8  108   67-204    85-199 (272)
 84 PRK08287 cobalt-precorrin-6Y C  97.6  0.0009 2.3E-08   44.1   9.4  122   65-213    28-161 (186)
 85 pfam09445 Methyltransf_15 RNA   97.6 0.00044 1.1E-08   46.1   7.7  115   68-198     1-136 (165)
 86 pfam05401 NodS Nodulation prot  97.5 0.00019 4.8E-09   48.4   5.6  115   68-205    44-177 (201)
 87 TIGR02752 MenG_heptapren 2-hep  97.5 0.00025 6.4E-09   47.5   5.4  118   66-204    44-172 (231)
 88 pfam01795 Methyltransf_5 MraW   97.5   0.011 2.8E-07   37.3  13.6   84   55-144     9-102 (310)
 89 COG0421 SpeE Spermidine syntha  97.4  0.0039 9.9E-08   40.1  11.3  137   69-223    78-235 (282)
 90 pfam01170 UPF0020 Putative RNA  97.4  0.0011 2.8E-08   43.5   8.1  109   48-174    13-133 (171)
 91 TIGR02021 BchM-ChlM magnesium   97.3 0.00046 1.2E-08   45.9   5.2   86   39-141    28-126 (224)
 92 PRK00312 pcm protein-L-isoaspa  97.3  0.0009 2.3E-08   44.1   6.5   93   65-187    76-179 (213)
 93 COG2242 CobL Precorrin-6B meth  97.3   0.012   3E-07   37.1  12.0  108   65-199    32-151 (187)
 94 pfam03848 TehB Tellurite resis  97.2  0.0032 8.1E-08   40.6   8.5  120   63-207    27-166 (192)
 95 COG2263 Predicted RNA methylas  97.1  0.0084 2.1E-07   38.0  10.2  117   49-196    29-155 (198)
 96 pfam06016 Reovirus_L2 Reovirus  97.1  0.0062 1.6E-07   38.9   9.4  142   61-222   501-654 (1289)
 97 PRK00050 mraW S-adenosyl-methy  97.1   0.025 6.5E-07   35.0  13.4   82   55-144    12-103 (309)
 98 COG0275 Predicted S-adenosylme  97.1   0.026 6.6E-07   34.9  13.1   84   55-144    12-105 (314)
 99 PRK06202 hypothetical protein;  97.1  0.0055 1.4E-07   39.2   8.9   67   68-143    62-138 (233)
100 KOG1499 consensus               97.1  0.0016   4E-08   42.6   5.9  105   52-179    47-163 (346)
101 COG1889 NOP1 Fibrillarin-like   97.1  0.0045 1.2E-07   39.7   8.1  120   65-205    74-212 (231)
102 PRK13944 protein-L-isoaspartat  97.0  0.0011 2.8E-08   43.5   4.7   95   65-186    70-176 (205)
103 PRK03522 rumB 23S rRNA methylu  97.0  0.0068 1.7E-07   38.6   8.7   89   49-151   215-314 (375)
104 PRK06922 hypothetical protein;  97.0  0.0069 1.8E-07   38.5   8.7  103   66-182   419-538 (679)
105 pfam02384 N6_Mtase N-6 DNA Met  97.0  0.0035 8.9E-08   40.4   7.1  141   47-201    29-207 (312)
106 pfam00891 Methyltransf_2 O-met  97.0   0.034 8.6E-07   34.2  12.1  126   34-182    68-197 (239)
107 PRK12335 tellurite resistance   97.0  0.0042 1.1E-07   39.9   7.4  105   59-188   115-231 (289)
108 PRK13943 protein-L-isoaspartat  97.0  0.0012   3E-08   43.4   4.5   90   65-181    73-173 (317)
109 KOG1270 consensus               96.9  0.0036 9.2E-08   40.3   6.6  101   61-183    77-195 (282)
110 PRK13168 rumA 23S rRNA 5-methy  96.8  0.0089 2.3E-07   37.8   7.9   75   65-150   292-377 (440)
111 pfam01596 Methyltransf_3 O-met  96.8    0.03 7.6E-07   34.6  10.5  116   49-186    29-159 (204)
112 COG2521 Predicted archaeal met  96.8    0.05 1.3E-06   33.2  12.1  162   28-207    53-277 (287)
113 PRK00811 spermidine synthase;   96.8   0.032 8.1E-07   34.4  10.4  123   67-207    78-221 (283)
114 TIGR02469 CbiT precorrin-6Y C5  96.7   0.013 3.4E-07   36.8   8.2  103   65-183    17-133 (135)
115 TIGR00406 prmA ribosomal prote  96.7  0.0035 8.8E-08   40.4   5.1  130   56-205   185-323 (330)
116 COG4976 Predicted methyltransf  96.6  0.0029 7.4E-08   40.9   4.2  121   44-188   105-230 (287)
117 KOG1500 consensus               96.6  0.0064 1.6E-07   38.8   5.9  120   36-180   144-279 (517)
118 PRK05031 tRNA (uracil-5-)-meth  96.4   0.035 8.8E-07   34.2   8.8   92   52-152   193-304 (363)
119 pfam08123 DOT1 Histone methyla  96.4   0.052 1.3E-06   33.0   9.5  109   55-186    31-162 (205)
120 COG2520 Predicted methyltransf  96.3   0.057 1.4E-06   32.8   9.4  136   64-226   185-338 (341)
121 KOG3420 consensus               96.3    0.01 2.7E-07   37.4   5.6  126   27-170     6-144 (185)
122 TIGR00537 hemK_rel_arch methyl  96.3    0.01 2.5E-07   37.5   5.3  128   63-206    17-167 (183)
123 KOG2899 consensus               96.3   0.016   4E-07   36.3   6.3   45   57-105    44-92  (288)
124 TIGR00080 pimt protein-L-isoas  96.1   0.039 9.9E-07   33.8   7.5   96   63-185    78-189 (228)
125 COG4122 Predicted O-methyltran  96.1   0.085 2.2E-06   31.7   9.2  100   66-186    58-170 (219)
126 COG2265 TrmA SAM-dependent met  96.1   0.022 5.5E-07   35.4   6.1   87   53-151   279-376 (432)
127 COG3963 Phospholipid N-methylt  96.0   0.052 1.3E-06   33.1   8.0  130   66-210    47-185 (194)
128 pfam05958 tRNA_U5-meth_tr tRNA  96.0   0.047 1.2E-06   33.3   7.7   89   53-150   184-292 (353)
129 KOG0820 consensus               96.0    0.01 2.7E-07   37.4   4.4  110   23-149    13-137 (315)
130 TIGR00006 TIGR00006 S-adenosyl  96.0    0.14 3.7E-06   30.3  10.2   84   52-144    16-111 (323)
131 KOG2904 consensus               96.0   0.056 1.4E-06   32.9   7.9  136   68-214   149-321 (328)
132 pfam10294 Methyltransf_16 Puta  95.9     0.1 2.6E-06   31.2   9.0  115   66-199    43-171 (171)
133 COG3510 CmcI Cephalosporin hyd  95.9    0.11 2.8E-06   31.0   9.1  103   67-181    69-178 (237)
134 PRK05785 hypothetical protein;  95.9   0.045 1.2E-06   33.4   7.1   64   66-143    50-116 (225)
135 pfam08003 Methyltransf_9 Prote  95.9   0.062 1.6E-06   32.6   7.8  117   67-207   115-267 (315)
136 COG0030 KsgA Dimethyladenosine  95.9   0.041   1E-06   33.7   6.8   82   55-149    19-109 (259)
137 TIGR03451 mycoS_dep_FDH mycoth  95.8   0.069 1.8E-06   32.3   7.8   97   65-183   174-276 (358)
138 PRK00274 ksgA dimethyladenosin  95.8   0.029 7.4E-07   34.6   5.9  103   65-177    37-149 (267)
139 pfam01564 Spermine_synth Sperm  95.8    0.16 4.1E-06   30.0   9.7  124   67-207    75-217 (240)
140 smart00650 rADc Ribosomal RNA   95.8   0.025 6.5E-07   35.0   5.4  100   66-178    12-125 (169)
141 KOG2915 consensus               95.7   0.023 5.8E-07   35.3   5.2   84   47-143    90-185 (314)
142 PTZ00338 dimethyladenosine tra  95.7   0.035 8.9E-07   34.1   5.9   70   65-149    36-117 (296)
143 PRK00121 trmB tRNA (guanine-N(  95.7   0.069 1.8E-06   32.3   7.4  121   67-203    54-192 (229)
144 COG0357 GidB Predicted S-adeno  95.7    0.15 3.9E-06   30.1   9.2  112   68-206    68-196 (215)
145 KOG2940 consensus               95.6   0.012 3.1E-07   37.0   3.4  136   28-197    44-188 (325)
146 KOG3010 consensus               95.5   0.026 6.6E-07   34.9   4.7  111   69-201    35-157 (261)
147 pfam00398 RrnaAD Ribosomal RNA  95.4   0.045 1.1E-06   33.4   5.8   77   58-148    22-107 (258)
148 pfam02390 Methyltransf_4 Putat  95.4   0.087 2.2E-06   31.7   7.0  117   66-198    19-152 (199)
149 KOG3045 consensus               95.3   0.084 2.1E-06   31.7   6.8  115   55-202   168-286 (325)
150 COG4076 Predicted RNA methylas  95.3   0.028 7.1E-07   34.7   4.3   94   69-186    34-139 (252)
151 TIGR00740 TIGR00740 methyltran  95.2   0.029 7.4E-07   34.6   4.1  128   52-202    44-191 (247)
152 pfam01234 NNMT_PNMT_TEMT NNMT/  95.1     0.3 7.6E-06   28.3  10.0   48   52-105    40-89  (261)
153 PHA02056 putative methyltransf  95.1   0.018 4.5E-07   36.0   2.9  120   50-182    46-175 (279)
154 KOG1663 consensus               95.0    0.27   7E-06   28.5   8.7  102   66-186    72-188 (237)
155 COG2518 Pcm Protein-L-isoaspar  94.9   0.043 1.1E-06   33.6   4.4   96   54-184    63-170 (209)
156 PRK00536 speE spermidine synth  94.7    0.38 9.7E-06   27.6  10.1  128   57-209    60-201 (262)
157 COG0742 N6-adenine-specific me  94.7    0.23 5.9E-06   29.0   7.7  104   62-186    34-157 (187)
158 KOG2187 consensus               94.6   0.099 2.5E-06   31.3   5.5   92   51-152   367-470 (534)
159 PRK10909 rsmD 16S rRNA m(2)G96  94.6    0.28 7.1E-06   28.5   7.8   99   67-186    52-161 (198)
160 PRK11783 rlmL 23S rRNA m(2)G24  94.5     0.3 7.6E-06   28.3   7.8  103   66-187   551-675 (716)
161 TIGR00477 tehB tellurite resis  94.4   0.045 1.2E-06   33.4   3.5  111   57-188    64-183 (239)
162 KOG4300 consensus               94.4    0.19 4.9E-06   29.5   6.6  120   61-202    68-201 (252)
163 KOG2361 consensus               94.4    0.11 2.8E-06   31.0   5.4  154   34-207    38-207 (264)
164 pfam03686 UPF0146 Uncharacteri  94.4    0.46 1.2E-05   27.1   8.6   97   67-190    13-109 (127)
165 KOG0024 consensus               94.1   0.036 9.2E-07   34.1   2.5  100   65-184   167-274 (354)
166 pfam05148 Methyltransf_8 Hypot  94.1    0.53 1.3E-05   26.8  11.2  164    4-203     4-176 (214)
167 COG1255 Uncharacterized protei  94.0    0.39 9.9E-06   27.6   7.6   96   66-189    13-108 (129)
168 pfam00145 DNA_methylase C-5 cy  94.0    0.46 1.2E-05   27.1   7.9  136   69-222     1-159 (319)
169 KOG2671 consensus               93.8    0.17 4.4E-06   29.8   5.5  114   58-183   199-354 (421)
170 pfam05206 TRM13 Methyltransfer  93.6     0.5 1.3E-05   26.9   7.6  101   55-173     6-117 (256)
171 KOG2360 consensus               93.5   0.049 1.3E-06   33.2   2.2  147   67-224   213-391 (413)
172 cd00315 Cyt_C5_DNA_methylase C  93.0     0.8   2E-05   25.6   8.1  138   69-222     1-161 (275)
173 pfam06962 rRNA_methylase Putat  92.8    0.86 2.2E-05   25.4   7.8   83   98-188     2-97  (140)
174 KOG1661 consensus               92.7    0.04   1E-06   33.8   0.8  140   63-214    78-231 (237)
175 KOG1541 consensus               92.4    0.62 1.6E-05   26.3   6.6  137   68-221    51-200 (270)
176 pfam05185 PRMT5 PRMT5 arginine  92.4    0.39   1E-05   27.5   5.6   99   69-184   188-298 (447)
177 COG4798 Predicted methyltransf  92.3    0.77   2E-05   25.7   7.0   35   65-102    46-80  (238)
178 PRK09422 alcohol dehydrogenase  92.3       1 2.5E-05   25.0   8.0  112   46-182   145-260 (338)
179 PRK10083 putative dehydrogenas  92.1    0.72 1.8E-05   25.9   6.6   99   65-186   158-262 (339)
180 PRK04148 hypothetical protein;  92.1    0.73 1.8E-05   25.9   6.6  104   58-189     8-115 (135)
181 PRK10611 chemotaxis methyltran  91.5     1.2 3.1E-05   24.5   9.0  126   47-183    97-262 (287)
182 COG0220 Predicted S-adenosylme  91.3    0.85 2.2E-05   25.4   6.3  113   63-191    42-172 (227)
183 TIGR00479 rumA 23S rRNA (uraci  91.3    0.35   9E-06   27.8   4.3   85   54-149   281-376 (434)
184 KOG3191 consensus               91.2     1.3 3.3E-05   24.3  12.4  145   68-226    44-208 (209)
185 TIGR00182 plsX fatty acid/phos  91.0    0.45 1.1E-05   27.2   4.6   73   68-150   138-233 (344)
186 TIGR01181 dTDP_gluc_dehyt dTDP  91.0    0.67 1.7E-05   26.1   5.5   59   80-144    14-82  (340)
187 TIGR00417 speE spermidine synt  90.8    0.61 1.6E-05   26.3   5.1  130   61-206    67-224 (284)
188 pfam05724 TPMT Thiopurine S-me  90.7     1.4 3.7E-05   24.0   7.6  116   65-201    20-169 (203)
189 PRK05396 tdh L-threonine 3-deh  90.7     1.4 3.7E-05   24.0   7.9   97   67-186   163-266 (341)
190 COG1063 Tdh Threonine dehydrog  90.2     1.6   4E-05   23.7  10.2  104   63-188   164-274 (350)
191 pfam03602 Cons_hypoth95 Conser  90.2     1.6 4.1E-05   23.7   8.1   99   67-186    43-154 (181)
192 TIGR03366 HpnZ_proposed putati  90.0    0.47 1.2E-05   27.0   4.0   94   65-182   118-217 (280)
193 KOG2730 consensus               89.7     0.4   1E-05   27.5   3.5   74   44-125    70-158 (263)
194 pfam12147 Hydrolase_5 Putative  89.3     1.9 4.8E-05   23.3   8.9  138   26-181    95-247 (311)
195 TIGR03201 dearomat_had 6-hydro  89.0       2 5.1E-05   23.1   7.0  103   65-184   164-273 (349)
196 PRK09880 L-idonate 5-dehydroge  88.6    0.31 7.9E-06   28.2   2.2   97   66-186   168-269 (343)
197 PRK11524 putative methyltransf  88.3     2.2 5.6E-05   22.9   7.7   28  173-200   205-233 (284)
198 TIGR00091 TIGR00091 tRNA (guan  88.2     2.2 5.7E-05   22.8   7.5  122   66-206    18-171 (216)
199 pfam03141 DUF248 Putative meth  87.7    0.66 1.7E-05   26.1   3.5  162   38-223   339-505 (506)
200 pfam06080 DUF938 Protein of un  87.6     2.4 6.2E-05   22.6   6.7   28  155-182   110-137 (201)
201 KOG1331 consensus               87.4     2.2 5.7E-05   22.8   6.1  127   33-185    13-145 (293)
202 TIGR03439 methyl_EasF probable  87.0     2.6 6.6E-05   22.4  10.0  183   29-223    34-262 (319)
203 PRK13771 putative alcohol dehy  86.7     2.2 5.7E-05   22.8   5.7   93   61-182   157-254 (332)
204 TIGR00095 TIGR00095 putative m  86.6     1.9 4.8E-05   23.3   5.3  106   67-184    55-178 (210)
205 pfam01739 CheR CheR methyltran  86.1     2.9 7.5E-05   22.1   9.0   98   68-182    31-172 (194)
206 pfam04672 DUF574 Protein of un  86.0     2.9 7.5E-05   22.1   8.4  135   47-202    56-210 (268)
207 PRK06567 putative bifunctional  85.9     1.1 2.7E-05   24.9   3.7   41   67-111   400-440 (1048)
208 KOG1269 consensus               85.6    0.73 1.9E-05   25.9   2.8  104   64-184   107-216 (364)
209 PRK13845 putative glycerol-3-p  85.4    0.87 2.2E-05   25.4   3.1   92   47-150   207-333 (437)
210 COG1062 AdhC Zn-dependent alco  84.2     2.9 7.5E-05   22.1   5.3   97   66-184   184-286 (366)
211 pfam09243 Rsm22 Mitochondrial   83.6     2.1 5.2E-05   23.0   4.3   46   54-103    22-67  (275)
212 COG1064 AdhP Zn-dependent alco  83.2     3.9  0.0001   21.3   7.8   90   65-182   164-258 (339)
213 PRK06179 short chain dehydroge  82.9       4  0.0001   21.2   9.3   80   67-149     3-87  (270)
214 smart00138 MeTrc Methyltransfe  82.7     4.1  0.0001   21.2   7.2  120   47-183    74-242 (264)
215 PRK12428 3-alpha-hydroxysteroi  82.6     4.2 0.00011   21.1  10.5   72   67-142     4-75  (261)
216 pfam02527 GidB rRNA small subu  81.9     3.1 7.8E-05   21.9   4.7  104   68-200    49-163 (184)
217 KOG1209 consensus               81.9     4.4 0.00011   21.0   5.6   81   68-150     7-96  (289)
218 KOG4169 consensus               81.8     4.4 0.00011   20.9   8.2  152   67-225     4-184 (261)
219 COG0500 SmtA SAM-dependent met  81.0     4.7 0.00012   20.8   9.2   95   71-186    52-158 (257)
220 KOG2651 consensus               80.6     1.5 3.9E-05   23.8   2.8   44   55-103   141-184 (476)
221 KOG2920 consensus               80.3       5 0.00013   20.6   5.4  134   51-193    98-249 (282)
222 PRK05331 putative glycerol-3-p  79.7     2.1 5.3E-05   23.0   3.2  103   36-150    97-233 (317)
223 PRK10846 bifunctional folylpol  79.7     5.2 0.00013   20.5  12.6   66  139-217   299-366 (416)
224 pfam01358 PARP_regulatory Poly  79.4     5.3 0.00014   20.5   7.1   98   46-145    30-138 (295)
225 PRK13846 putative glycerol-3-p  78.7     2.6 6.6E-05   22.4   3.5   92   47-150   110-234 (316)
226 PRK11908 NAD-dependent epimera  78.7     5.6 0.00014   20.3   7.8   47   95-145    26-78  (347)
227 COG3897 Predicted methyltransf  78.5     5.7 0.00014   20.3   5.4   99   58-186    71-180 (218)
228 pfam02504 FA_synthesis Fatty a  78.0     2.7 6.9E-05   22.3   3.4   93   46-150   104-230 (322)
229 KOG3924 consensus               77.5     3.7 9.4E-05   21.5   3.9   92   43-142   161-279 (419)
230 PRK01581 speE spermidine synth  76.6     6.4 0.00016   19.9   9.3   99   68-183   140-257 (363)
231 COG1236 YSH1 Predicted exonucl  76.3     5.1 0.00013   20.6   4.4   99   96-200   141-240 (427)
232 COG5459 Predicted rRNA methyla  76.2       3 7.6E-05   22.0   3.2   34   44-80     92-126 (484)
233 PRK12767 carbamoyl phosphate s  76.1     6.6 0.00017   19.9   9.0  148   69-221     2-166 (325)
234 COG0416 PlsX Fatty acid/phosph  75.5     2.5 6.3E-05   22.6   2.6  162   26-202    83-318 (338)
235 TIGR00452 TIGR00452 methyltran  74.7     3.8 9.7E-05   21.4   3.4   32   67-103   121-152 (316)
236 pfam07757 AdoMet_MTase Predict  73.1     3.9   1E-04   21.3   3.1   51   48-105    40-90  (112)
237 COG0286 HsdM Type I restrictio  72.3     8.2 0.00021   19.3   7.7  156   28-198   151-346 (489)
238 TIGR00755 ksgA dimethyladenosi  72.2       7 0.00018   19.7   4.3   82   58-148    21-115 (277)
239 PRK13255 thiopurine S-methyltr  72.1     8.3 0.00021   19.2   7.1  115   66-201    36-184 (218)
240 TIGR01179 galE UDP-glucose 4-e  72.1     8.3 0.00021   19.2   5.1   58  111-169    50-118 (341)
241 TIGR00513 accA acetyl-CoA carb  71.9     1.4 3.6E-05   24.1   0.6   59   39-109   137-196 (329)
242 TIGR03675 arCOG00543 arCOG0178  71.8     8.4 0.00021   19.2   4.7   86  113-202   341-428 (630)
243 PRK03612 spermidine synthase;   71.5     8.5 0.00022   19.2   8.9  124   67-206   293-438 (516)
244 PRK06398 aldose dehydrogenase;  71.5     8.6 0.00022   19.2   8.6   78   67-147     5-85  (256)
245 TIGR01444 fkbM_fam methyltrans  70.8     4.7 0.00012   20.8   3.1   34   70-105     1-34  (142)
246 smart00829 PKS_ER Enoylreducta  69.9     9.3 0.00024   18.9   7.3   94   65-180   102-202 (288)
247 PRK10693 response regulator of  68.3       9 0.00023   19.0   4.1   20   66-85     51-70  (337)
248 pfam07942 N2227 N2227-like pro  68.0     8.9 0.00023   19.1   4.0   78  110-205   145-237 (268)
249 PRK07806 short chain dehydroge  67.4      10 0.00027   18.6   9.9  112   67-181     5-132 (248)
250 PRK00107 gidB glucose-inhibite  67.3      11 0.00027   18.6   9.9  102   67-197    69-181 (216)
251 COG0623 FabI Enoyl-[acyl-carri  66.7      11 0.00027   18.5   6.7   78  109-188    55-149 (259)
252 PRK13699 putative methylase; P  65.9      11 0.00028   18.4   5.3   41  157-201   148-189 (227)
253 pfam05219 DREV DREV methyltran  65.6      11 0.00029   18.4   8.7   29   69-103    96-124 (265)
254 COG0270 Dcm Site-specific DNA   65.4     5.9 0.00015   20.2   2.7  117   68-199     3-138 (328)
255 TIGR01230 agmatinase agmatinas  65.4       6 0.00015   20.1   2.8   56   72-131   229-293 (296)
256 KOG0022 consensus               64.9      12  0.0003   18.3   4.9   77   66-152   191-274 (375)
257 PRK10046 dpiA two-component re  64.1     6.8 0.00017   19.8   2.8   65  134-198    49-123 (225)
258 PRK10610 chemotaxis regulatory  62.9     5.8 0.00015   20.2   2.3   27  132-158    47-74  (129)
259 PRK07578 short chain dehydroge  60.4      14 0.00036   17.8   8.6  101   69-181     1-109 (199)
260 TIGR00959 ffh signal recogniti  60.2      14 0.00036   17.8   4.6  117   70-195   104-242 (439)
261 PRK05872 short chain dehydroge  59.8      14 0.00037   17.7   9.5  112   67-181     8-138 (296)
262 PRK10955 DNA-binding transcrip  59.6      15 0.00037   17.7   3.9   43  159-201   155-209 (232)
263 PRK06603 enoyl-(acyl carrier p  59.1      15 0.00038   17.7   8.4  113   67-181     7-144 (260)
264 pfam05891 Hydroxy-O-Methy Puta  58.2      15 0.00039   17.6   7.3   93   69-183    57-161 (217)
265 pfam01555 N6_N4_Mtase DNA meth  57.8      16  0.0004   17.5   4.8   41  157-201   166-207 (221)
266 PRK08220 2,3-dihydroxybenzoate  56.9      16 0.00041   17.4   8.5  112   67-181     7-133 (253)
267 pfam10356 DUF2034 Protein of u  56.6      16 0.00042   17.4   5.8   90  113-204     2-114 (185)
268 TIGR03587 Pse_Me-ase pseudamin  56.3      17 0.00042   17.4   7.0   98   29-143     9-113 (204)
269 pfam10237 N6-adenineMlase Prob  56.2      17 0.00042   17.4   9.8  133   67-222    25-157 (161)
270 TIGR00138 gidB methyltransfera  56.1     7.1 0.00018   19.7   1.8  108   56-189    35-157 (197)
271 KOG1197 consensus               55.7      17 0.00043   17.3   7.2   79   58-141   138-221 (336)
272 pfam10354 DUF2431 Domain of un  55.4      17 0.00043   17.3   4.7   75  111-190    53-132 (166)
273 TIGR03315 Se_ygfK putative sel  54.7      17 0.00045   17.2   4.7   16   67-82    536-551 (1012)
274 PRK09853 putative selenate red  54.5      18 0.00045   17.2   5.0   31   66-98    548-578 (1032)
275 KOG2078 consensus               54.4       5 0.00013   20.6   0.8   49   47-105   232-281 (495)
276 PRK11361 acetoacetate metaboli  54.3     8.9 0.00023   19.1   2.0   28   48-77    148-175 (457)
277 PRK08213 gluconate 5-dehydroge  54.3      18 0.00045   17.2   9.2   86   56-146     2-100 (259)
278 PRK09242 tropinone reductase;   53.7      18 0.00046   17.1   8.5  117   60-181     4-145 (258)
279 TIGR02418 acolac_catab acetola  52.9      17 0.00044   17.3   3.3  136   63-206   265-469 (553)
280 pfam11324 DUF3126 Protein of u  52.5      19 0.00048   17.0   3.9   32  189-220     2-34  (63)
281 PRK06550 fabG 3-ketoacyl-(acyl  52.5      19 0.00048   17.0   9.2   73   67-144     4-77  (237)
282 PRK08324 short chain dehydroge  51.9      19  0.0005   16.9   9.9  111   67-181   420-554 (676)
283 COG1748 LYS9 Saccharopine dehy  51.6      20  0.0005   16.9   8.7  126   69-204     2-146 (389)
284 PRK10365 transcriptional regul  51.6     6.8 0.00017   19.8   1.1   22   67-89    161-182 (441)
285 KOG3178 consensus               51.3      20 0.00051   16.9   7.8   53   65-121   175-232 (342)
286 TIGR01096 3A0103s03R lysine-ar  51.1      20 0.00051   16.8   3.4   51   94-144    45-103 (333)
287 pfam11312 DUF3115 Protein of u  50.9      20 0.00051   16.8   4.0   73   67-140    79-179 (288)
288 PRK12825 fabG 3-ketoacyl-(acyl  48.9      22 0.00055   16.6   7.7   79   67-148     6-98  (250)
289 COG0825 AccA Acetyl-CoA carbox  48.8      14 0.00036   17.8   2.3   37   39-79    128-165 (317)
290 COG1088 RfbB dTDP-D-glucose 4,  48.5      22 0.00056   16.6   5.9   50   94-145    25-84  (340)
291 TIGR00437 feoB ferrous iron tr  48.1      17 0.00042   17.4   2.6   78  108-198    47-153 (733)
292 PRK11127 autonomous glycyl rad  47.7      18 0.00047   17.1   2.8   67   73-141    30-99  (127)
293 PRK06124 gluconate 5-dehydroge  47.6      23 0.00058   16.5   7.8   83   58-145     6-101 (259)
294 PRK10309 galactitol-1-phosphat  47.2      23 0.00059   16.5   7.8   95   66-182   159-259 (347)
295 PRK06171 sorbitol-6-phosphate   47.0      23 0.00059   16.4   9.0   75   67-145     8-87  (266)
296 PRK11430 hypothetical protein;  45.3      25 0.00063   16.3   4.2   21  112-132    71-91  (381)
297 PRK08125 bifunctional UDP-gluc  45.0      25 0.00063   16.3   5.7   74   65-144   312-391 (660)
298 PRK07533 enoyl-(acyl carrier p  44.3      25 0.00065   16.2  10.0  116   67-184     5-145 (254)
299 pfam03492 Methyltransf_7 SAM d  44.2      26 0.00065   16.2   3.6   29   58-86      5-35  (331)
300 PRK08277 D-mannonate oxidoredu  43.9      26 0.00066   16.1  10.3   81   59-144     3-96  (278)
301 PRK07825 short chain dehydroge  43.5      26 0.00067   16.1   7.7   80   67-149     4-92  (273)
302 PRK08671 methionine aminopepti  42.9      27 0.00068   16.1   4.3   30   41-75      4-33  (293)
303 cd01088 MetAP2 Methionine Amin  42.8      27 0.00068   16.0   4.2  113   44-178     6-125 (291)
304 CHL00198 accA acetyl-CoA carbo  42.8      12 0.00031   18.2   1.2   38   38-79    131-169 (322)
305 PRK06128 oxidoreductase; Provi  42.4      27 0.00069   16.0   5.4  111   67-181    54-189 (300)
306 PRK06914 short chain dehydroge  42.4      27 0.00069   16.0   8.6  110   68-180     3-136 (280)
307 COG0300 DltE Short-chain dehyd  42.1      28  0.0007   16.0   6.6  148   66-214     4-192 (265)
308 TIGR03438 probable methyltrans  41.6      28 0.00072   15.9  13.3  179   29-224    21-242 (301)
309 pfam00107 ADH_zinc_N Zinc-bind  41.5      28 0.00072   15.9   3.4   72   96-185    16-92  (131)
310 COG2910 Putative NADH-flavin r  41.1      29 0.00073   15.9   7.3   86   85-177    16-105 (211)
311 COG4022 Uncharacterized protei  40.9      29 0.00073   15.9   4.5   59  114-174   170-228 (286)
312 COG1352 CheR Methylase of chem  40.8      29 0.00074   15.8   3.9  128   47-183    72-241 (268)
313 pfam06859 Bin3 Bicoid-interact  40.6      29 0.00074   15.8   3.3   19  165-183    26-44  (110)
314 TIGR03466 HpnA hopanoid-associ  40.3      29 0.00075   15.8   8.7   29  111-143    44-72  (328)
315 TIGR02154 PhoB phosphate regul  39.8      17 0.00045   17.2   1.7   73  123-201    37-121 (226)
316 PRK06182 short chain dehydroge  39.8      30 0.00076   15.8   7.9  145   67-214     2-182 (273)
317 PRK12481 2-deoxy-D-gluconate 3  39.4      30 0.00077   15.7   7.7  111   67-180     7-139 (251)
318 PRK05786 fabG 3-ketoacyl-(acyl  39.0      31 0.00078   15.7  10.6  112   67-181     4-133 (238)
319 pfam05404 TRAP-delta Transloco  38.5      26 0.00066   16.2   2.4   38  173-211    90-127 (167)
320 PRK09072 short chain dehydroge  38.4      31  0.0008   15.6   8.5  145   67-214     4-187 (262)
321 PRK05724 acetyl-CoA carboxylas  38.3      16  0.0004   17.5   1.3   38   38-79    127-165 (318)
322 PRK04143 hypothetical protein;  38.2     5.6 0.00014   20.3  -1.1   60   58-123    32-97  (267)
323 KOG0822 consensus               38.0      32 0.00081   15.6   5.0   26  159-184   454-479 (649)
324 pfam03435 Saccharop_dh Sacchar  37.7      32 0.00082   15.5   8.7   10   70-79    118-127 (384)
325 PRK10430 DNA-binding transcrip  36.6      31 0.00079   15.7   2.5   58  134-191    48-115 (239)
326 cd00156 REC Signal receiver do  36.5      29 0.00074   15.8   2.4   26  133-158    39-65  (113)
327 pfam00072 Response_reg Respons  36.4      34 0.00086   15.4   5.7   23  133-155    40-63  (111)
328 PRK06523 short chain dehydroge  36.2      34 0.00087   15.4   9.5  110   67-180     8-134 (260)
329 PRK06057 short chain dehydroge  35.9      34 0.00088   15.4   9.0  110   67-180     6-136 (255)
330 TIGR03206 benzo_BadH 2-hydroxy  35.7      35 0.00088   15.4   7.0  111   67-181     2-136 (250)
331 PRK11173 two-component respons  35.6      35 0.00089   15.3   4.6   50   39-88     20-69  (237)
332 KOG1198 consensus               35.3      35  0.0009   15.3   5.9   79   59-141   150-231 (347)
333 PRK11917 bifunctional adhesin/  34.9      11 0.00028   18.5   0.0   20  127-146    93-112 (259)
334 PRK09186 flagellin modificatio  34.8      36 0.00091   15.3   9.3   78   67-147     3-94  (255)
335 PRK10675 UDP-galactose-4-epime  34.8      36 0.00091   15.3   8.7   11   69-79     75-85  (338)
336 PRK13656 trans-2-enoyl-CoA red  34.8      36 0.00091   15.3   4.7   79   64-145    36-142 (400)
337 KOG4022 consensus               34.4      36 0.00093   15.2   7.7   88   94-181    26-127 (236)
338 CHL00194 ycf39 Ycf39; Provisio  34.3      37 0.00093   15.2   6.5   67   69-141     1-70  (319)
339 pfam12241 Enoyl_reductase Tran  34.3      37 0.00093   15.2   2.8   21   28-51      7-27  (237)
340 PRK12746 short chain dehydroge  34.2      37 0.00094   15.2   7.4  114   67-181     5-144 (254)
341 KOG2232 consensus               33.5      11 0.00027   18.5  -0.2   37   55-91    101-141 (734)
342 pfam01073 3Beta_HSD 3-beta hyd  32.9      38 0.00098   15.1   8.2   30  110-143    45-74  (280)
343 pfam05575 V_cholerae_RfbT Vibr  32.8      39 0.00098   15.1   2.9  141   65-212    77-264 (286)
344 pfam03341 Pox_mRNA-cap Poxviru  32.8      30 0.00077   15.7   2.0   89  134-224    94-200 (287)
345 PRK10161 transcriptional regul  32.7      39 0.00099   15.0   3.7  158   42-201    22-207 (229)
346 PRK05866 short chain dehydroge  32.5      39 0.00099   15.0   9.7  111   67-180    39-174 (290)
347 PRK09468 ompR osmolarity respo  32.3      39   0.001   15.0   5.2   35   42-76     25-59  (239)
348 pfam08471 Ribonuc_red_2_N Clas  32.0      23 0.00058   16.5   1.2   16   76-91     12-27  (86)
349 PRK10217 dTDP-glucose 4,6-dehy  31.7      40   0.001   14.9   7.5   48  149-197   220-267 (355)
350 PRK12826 3-ketoacyl-(acyl-carr  31.7      40   0.001   14.9   7.7   76   67-145     5-93  (253)
351 PRK12744 short chain dehydroge  31.6      40   0.001   14.9   9.8  112   67-181     7-143 (257)
352 COG5136 U1 snRNP-specific prot  31.0      35  0.0009   15.3   2.1   44   34-79     34-93  (188)
353 PRK08993 2-deoxy-D-gluconate 3  30.8      42  0.0011   14.9   8.7   80   61-145     5-95  (253)
354 PRK10508 hypothetical protein;  30.7      40   0.001   15.0   2.3   33   50-82     86-118 (333)
355 KOG2775 consensus               30.4      18 0.00045   17.2   0.4   47   22-76     69-117 (397)
356 COG1214 Inactive homolog of me  30.3      35 0.00089   15.3   1.9   35   50-84     40-74  (220)
357 PRK10201 G/U mismatch-specific  30.1      39 0.00099   15.0   2.2   23   63-85      4-26  (168)
358 PRK12319 acetyl-CoA carboxylas  30.1      40   0.001   15.0   2.2   38   38-79     75-113 (256)
359 COG0068 HypF Hydrogenase matur  30.0      43  0.0011   14.8   5.6   35  114-148   422-463 (750)
360 cd01269 PLX Pollux (PLX) Phosp  29.8      35 0.00089   15.3   1.9   53  141-202    71-127 (129)
361 PRK06346 consensus              29.6      44  0.0011   14.7   8.8  112   67-181     4-139 (251)
362 KOG1371 consensus               29.5      44  0.0011   14.7   6.0   71   69-145     3-87  (343)
363 PRK06500 short chain dehydroge  29.4      44  0.0011   14.7  10.1  112   67-181     5-134 (249)
364 PRK07984 enoyl-(acyl carrier p  29.4      44  0.0011   14.7  10.3  115   67-183     5-145 (262)
365 PRK06139 short chain dehydroge  29.1      45  0.0011   14.7   9.0  144   67-213     5-191 (324)
366 PRK06101 short chain dehydroge  28.9      45  0.0011   14.6   9.7  109   70-181     3-125 (241)
367 PRK05717 oxidoreductase; Valid  28.7      45  0.0012   14.6   7.9  111   67-181     9-141 (255)
368 PRK08589 short chain dehydroge  28.2      46  0.0012   14.6   9.9  112   67-181     5-138 (272)
369 TIGR03120 one_C_mch methenylte  27.9      47  0.0012   14.5   2.9   35   55-89     13-54  (312)
370 PRK13774 formimidoylglutamase;  27.5      47  0.0012   14.5   2.7   10   67-76     85-94  (311)
371 pfam02254 TrkA_N TrkA-N domain  27.4      48  0.0012   14.5   7.2   88   78-185     6-97  (115)
372 PRK07479 consensus              27.2      48  0.0012   14.5  10.4  112   67-181     4-139 (252)
373 PRK07326 short chain dehydroge  27.1      48  0.0012   14.4   8.6  111   67-181     4-136 (235)
374 KOG1201 consensus               26.9      49  0.0012   14.4   9.4  113   67-182    37-171 (300)
375 PRK11517 transcriptional regul  26.5      49  0.0012   14.4   2.1  158   42-201    20-200 (223)
376 TIGR02658 TTQ_MADH_Hv methylam  26.5      12 0.00031   18.2  -0.9   11   77-87    254-264 (360)
377 COG3288 PntA NAD/NADP transhyd  26.2      22 0.00057   16.5   0.4   18   66-83    272-289 (356)
378 PRK10336 DNA-binding transcrip  26.0      50  0.0013   14.3   2.6   33   44-76     22-54  (219)
379 pfam11775 CobT_C Cobalamin bio  25.8      38 0.00097   15.1   1.5   11  135-145   137-147 (220)
380 PRK10923 glnG nitrogen regulat  25.6      48  0.0012   14.4   2.0   14  120-133   244-257 (469)
381 TIGR00841 bass bile acid trans  25.6      21 0.00052   16.8   0.1   16   71-86    114-129 (374)
382 TIGR03589 PseB UDP-N-acetylglu  25.6      51  0.0013   14.3   7.1   33  108-144    51-83  (324)
383 PRK05557 fabG 3-ketoacyl-(acyl  25.1      53  0.0013   14.2   9.2   79   67-148     4-96  (248)
384 PRK09836 DNA-binding transcrip  24.8      53  0.0014   14.2   2.7  158   43-201    21-203 (226)
385 COG1069 AraB Ribulose kinase [  24.4      49  0.0013   14.4   1.9   52   40-91    191-243 (544)
386 KOG2352 consensus               24.4      54  0.0014   14.1   5.1  131   68-207   298-442 (482)
387 KOG2811 consensus               24.3      54  0.0014   14.1   5.1   38   55-92    169-207 (420)
388 PRK09390 fixJ response regulat  24.2      54  0.0014   14.1   2.4   68  133-203    45-122 (202)
389 COG3252 Methenyltetrahydrometh  24.2      45  0.0011   14.7   1.6   26   64-89     27-55  (314)
390 PRK10754 quinone oxidoreductas  24.2      55  0.0014   14.1   9.2  115   42-181   118-237 (327)
391 TIGR02091 glgC glucose-1-phosp  24.2      55  0.0014   14.1   2.1   42  102-143   111-154 (421)
392 PRK10529 DNA-binding transcrip  23.9      50  0.0013   14.4   1.8  158   43-201    22-204 (225)
393 PRK10710 DNA-binding transcrip  23.8      55  0.0014   14.1   2.1   47   41-87     29-75  (240)
394 KOG0023 consensus               23.8      56  0.0014   14.1   7.1   94   61-181   176-277 (360)
395 PRK05650 short chain dehydroge  23.8      56  0.0014   14.1   8.6  140   70-212     2-183 (270)
396 CHL00148 orf27 Ycf27; Reviewed  23.7      56  0.0014   14.1   3.8   36   43-79     27-62  (240)
397 PRK07060 short chain dehydroge  23.2      57  0.0015   14.0   9.0  111   67-181     8-134 (245)
398 PRK12939 short chain dehydroge  23.0      58  0.0015   14.0   7.4  111   67-180     6-139 (250)
399 cd01454 vWA_norD_type norD typ  22.9      58  0.0015   14.0   6.6   65  134-203   104-169 (174)
400 PRK06841 short chain dehydroge  22.9      58  0.0015   14.0   8.1   82   59-145     8-99  (255)
401 TIGR00308 TRM1 N2,N2-dimethylg  22.7      58  0.0015   13.9   3.6  145   70-220    97-269 (462)
402 pfam00106 adh_short short chai  22.6      59  0.0015   13.9   6.5   70  111-180    53-131 (167)
403 TIGR00078 nadC nicotinate-nucl  22.3      44  0.0011   14.7   1.3   25  123-147   194-219 (276)
404 TIGR00675 dcm DNA-cytosine met  22.2      58  0.0015   14.0   1.9  130   71-205     1-161 (425)
405 pfam04734 Ceramidase_alk Neutr  22.1      60  0.0015   13.8   3.0   34   58-91     75-112 (671)
406 pfam11968 DUF3321 Protein of u  21.8      61  0.0015   13.8   2.8  114   69-205    54-180 (220)
407 PRK08628 short chain dehydroge  21.7      61  0.0016   13.8  10.5  111   67-181     6-137 (258)
408 PRK07576 short chain dehydroge  21.7      61  0.0016   13.8   8.9   76   67-146     7-96  (260)
409 TIGR02622 CDP_4_6_dhtase CDP-g  21.6      62  0.0016   13.8   4.6   60   78-144    16-90  (361)
410 PRK07024 short chain dehydroge  21.4      62  0.0016   13.8   9.0   74   69-145     3-87  (256)
411 PRK11519 tyrosine kinase; Prov  21.3      62  0.0016   13.8   7.0   82   66-147   524-647 (720)
412 PRK07097 gluconate 5-dehydroge  21.3      62  0.0016   13.8   7.9   82   59-145     3-97  (265)
413 PRK10701 DNA-binding transcrip  21.1      62  0.0016   13.8   1.8   38   43-80     22-59  (240)
414 KOG0229 consensus               21.0      61  0.0016   13.8   1.8   43  178-224   152-209 (420)
415 PRK11083 DNA-binding response   21.0      63  0.0016   13.7   2.2   40   39-79     20-59  (229)
416 PRK07890 short chain dehydroge  20.9      64  0.0016   13.7   7.4  110   67-180     4-137 (258)
417 PRK07370 enoyl-(acyl carrier p  20.8      64  0.0016   13.7  10.4  114   67-182     6-147 (259)
418 COG1089 Gmd GDP-D-mannose dehy  20.5      44  0.0011   14.7   1.0  115   84-210    17-153 (345)
419 PRK12937 short chain dehydroge  20.5      65  0.0017   13.6   8.9  112   67-181     4-137 (245)
420 pfam03269 DUF268 Caenorhabditi  20.4      65  0.0017   13.6   8.2  126   68-207     2-145 (177)
421 TIGR02823 oxido_YhdH putative   20.4      34 0.00087   15.4   0.4   22   64-85     77-103 (330)
422 KOG3201 consensus               20.3      65  0.0017   13.6   5.9  119   67-200    29-158 (201)
423 PRK12429 3-hydroxybutyrate deh  20.3      65  0.0017   13.6   7.8  112   67-181     3-137 (258)
424 PRK07035 short chain dehydroge  20.3      65  0.0017   13.6   7.2   77   67-146     7-96  (252)
425 KOG3115 consensus               20.1      52  0.0013   14.2   1.3   32   69-104    62-93  (249)
426 KOG3206 consensus               20.0      66  0.0017   13.6   3.1   99   21-122   107-227 (234)

No 1  
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=100.00  E-value=0  Score=547.94  Aligned_cols=207  Identities=38%  Similarity=0.620  Sum_probs=199.7

Q ss_pred             ECCCCCCCCHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCE
Q ss_conf             00014640079999964089999999881844799999999986458313796788850455306899999706878832
Q gi|254780313|r   17 VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNT   96 (227)
Q Consensus        17 ~~~k~~~~ss~~W~~r~~~D~y~~~Ak~~gyrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~   96 (227)
                      |..|++++||++|++||.+|+||++||++||||||||||+|||+||+||+||++|||||||||||+|||++++++   .|
T Consensus         1 ~~~~~r~~sS~~W~~rq~~D~y~k~Ak~~gyRsRaafKL~EId~K~~l~~~~~~VlDLGaAPG~WsQva~~~~~~---~g   77 (209)
T PRK11188          1 MSGKKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGD---KG   77 (209)
T ss_pred             CCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCC---CC
T ss_conf             997668803599999871799999999868278999979999988564578998998068997578999997399---97


Q ss_pred             EEEEECCCCCCCCCCCEEEECCCCHHHHHHHHHHHCC-CCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             7864112133346981783011220799999997313-887489753202110222101578898999889876411487
Q gi|254780313|r   97 RVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNI  175 (227)
Q Consensus        97 ~VigVDl~~~~~i~gv~~~~gDi~~~~~~~~i~~~l~-~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~  175 (227)
                      +|+||||+||+|++||+|++|||+++++++.+.+.++ .++|+||||||||+||++++||+++++||+.+|++|..+|++
T Consensus        78 ~VigVDl~~~~pi~gv~~i~gDi~~~~~~~~i~~~~~~~~~DvVlSDmAPn~tG~~~~D~~~s~~L~~~al~~a~~~Lk~  157 (209)
T PRK11188         78 RVIACDILPMDPIVGVDFLQGDFRDELVLKALLERVGDSKVDVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRQVLAP  157 (209)
T ss_pred             EEEEEECCCCCCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             39998653045378967640344588999999998589873089666665667870335999999999999999986267


Q ss_pred             CCEEEEEEECCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEECCCC
Q ss_conf             746999930599989999999862584699768665755824989830755
Q gi|254780313|r  176 GGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR  226 (227)
Q Consensus       176 gG~fV~K~F~G~~~~~l~~~l~~~F~~V~~~KP~aSR~~S~E~Ylv~~gfK  226 (227)
                      ||+||+|+|+|.++++++..++.+|++|+++||+|||++|+|+|+||+|||
T Consensus       158 gG~fv~K~F~G~~~~~~~~~~k~~F~~V~~~KP~ASR~~S~E~Ylv~~gfK  208 (209)
T PRK11188        158 GGSFVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIVATGYK  208 (209)
T ss_pred             CCEEEEEEECCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEEECCC
T ss_conf             988999996487999999999702597889998674667854677870564


No 2  
>TIGR00438 rrmJ ribosomal RNA large subunit methyltransferase J; InterPro: IPR004512 The ribosomal RNA large subunit methyltransferase J 2.1.1 from EC methylates the 23S rRNA. It specifically methylates the uridine in position 2552 of 23s rRNA in the 50S particle using S-adenosyl-L-methionine as a substrate. It was previously known as cell division protein ftsJ.; GO: 0016436 rRNA (uridine) methyltransferase activity, 0006364 rRNA processing.
Probab=100.00  E-value=0  Score=520.03  Aligned_cols=187  Identities=42%  Similarity=0.670  Sum_probs=183.6

Q ss_pred             CHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCC--CCCCCE
Q ss_conf             999999988184479999999998645831379678885045530689999970687883278641121333--469817
Q gi|254780313|r   36 DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME--PILGVK  113 (227)
Q Consensus        36 D~y~~~Ak~~gyrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~--~i~gv~  113 (227)
                      |+||++|||++|||||+|||+|||++|+|||+|++|||||||||||||||.+.+|.   .|.||||||+||+  |+.||.
T Consensus         1 D~Yy~~AkK~~yRSRA~fKL~qln~~~kLik~G~~VlDLGAAPGGWsQva~~~~G~---kG~ViA~Dl~~~k~FP~~nv~   77 (192)
T TIGR00438         1 DYYYQKAKKEKYRSRASFKLLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGG---KGRVIAVDLQPMKGFPIENVD   77 (192)
T ss_pred             CCCHHHHHHCCCCHHHHHHHHHHCCCCCCEECCCEEEECCCCCCCHHHHHHHHHCC---CCEEEEEECCCCCCCCCCCEE
T ss_conf             94124243248801667899985021561107886786578987387788776068---533899854557885646614


Q ss_pred             EEECCCCHHHHHHHHHHHCCC---CCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHH
Q ss_conf             830112207999999973138---87489753202110222101578898999889876411487746999930599989
Q gi|254780313|r  114 FFKFDFLDLDSWEFIRQAIGG---NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTN  190 (227)
Q Consensus       114 ~~~gDi~~~~~~~~i~~~l~~---~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~  190 (227)
                      ||+||||++++.+.|++.+++   ++||||||||||+||.|++||.|+++|++.||++|..+|+++||||+|+|||+++.
T Consensus        78 fi~GDftdee~l~ki~~~~g~dekk~DVV~SDaaP~~SG~~~iDh~Rs~dLv~~aL~ia~~vL~~~GnfvvKvFqGe~~d  157 (192)
T TIGR00438        78 FIRGDFTDEEVLNKILERVGDDEKKVDVVMSDAAPNISGIWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEID  157 (192)
T ss_pred             EEECCCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHH
T ss_conf             75447678789999998578987437789852688878987543443799999999999998615898999985374288


Q ss_pred             HHHHHHHHHCCEEEEECCCCCCCCCCEEEEEECCC
Q ss_conf             99999986258469976866575582498983075
Q gi|254780313|r  191 DILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF  225 (227)
Q Consensus       191 ~l~~~l~~~F~~V~~~KP~aSR~~S~E~Ylv~~gf  225 (227)
                      ++++.++++|.+|++.||.|||++|+|+|+||++|
T Consensus       158 ~y~~e~r~~F~~~k~~kP~aSRk~SaEvYiva~~~  192 (192)
T TIGR00438       158 EYLNELRKLFEKVKVTKPQASRKRSAEVYIVAKRF  192 (192)
T ss_pred             HHHHHHHHCCCEEEEECCHHHHHCCCEEEEEEECC
T ss_conf             99997652054767447831320574689975069


No 3  
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=100.00  E-value=0  Score=474.67  Aligned_cols=202  Identities=50%  Similarity=0.837  Sum_probs=195.6

Q ss_pred             CCCHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEEC
Q ss_conf             40079999964089999999881844799999999986458313796788850455306899999706878832786411
Q gi|254780313|r   23 QGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID  102 (227)
Q Consensus        23 ~~ss~~W~~r~~~D~y~~~Ak~~gyrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVD  102 (227)
                      +.+|++|+.+|.+|+||++||++||||||||||+|||+||+||++|+.|+|||||||||||||+++++.++   +|+|||
T Consensus         1 ~~~s~~wl~~~~~D~Y~~~Ak~~gyRSRAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~---~vvavD   77 (205)
T COG0293           1 SGSSQRWLAEHLRDPYYKKAKKEGYRSRAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGG---KIVAVD   77 (205)
T ss_pred             CCCHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCC---CEEEEE
T ss_conf             96417789876026899987650621058889999987437305898799838799849999999738888---489997


Q ss_pred             CCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCC-CCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             213334698178301122079999999731388-7489753202110222101578898999889876411487746999
Q gi|254780313|r  103 ILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV  181 (227)
Q Consensus       103 l~~~~~i~gv~~~~gDi~~~~~~~~i~~~l~~~-~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~  181 (227)
                      ++||+|++||.+++|||+++++.+.|.+.+++. +|+|+||||||+||++++||+++++||+.|+++|..+|++||+||+
T Consensus        78 i~p~~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~  157 (205)
T COG0293          78 ILPMKPIPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVA  157 (205)
T ss_pred             CCCCCCCCCCEEEEEECCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEECCCCEEEE
T ss_conf             75455678946884132484379999987077876668725887767872200889999999999999872578983999


Q ss_pred             EEECCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEECCCCC
Q ss_conf             9305999899999998625846997686657558249898307559
Q gi|254780313|r  182 KTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK  227 (227)
Q Consensus       182 K~F~G~~~~~l~~~l~~~F~~V~~~KP~aSR~~S~E~Ylv~~gfKk  227 (227)
                      |+|||.+++++++.++++|++|+.+||+|||++|+|+|+||++|+.
T Consensus       158 K~fqg~~~~~~l~~~~~~F~~v~~~KP~aSR~~S~E~y~v~~~~~~  203 (205)
T COG0293         158 KVFQGEDFEDLLKALRRLFRKVKIFKPKASRKRSREIYLVAKGFKG  203 (205)
T ss_pred             EEEECCCHHHHHHHHHHHHCEEEEECCCCCCCCCCEEEEEEECCCC
T ss_conf             9975798799999999863206773585546777148999971435


No 4  
>KOG4589 consensus
Probab=100.00  E-value=0  Score=472.42  Aligned_cols=215  Identities=37%  Similarity=0.625  Sum_probs=206.7

Q ss_pred             CCCCEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHH
Q ss_conf             56541100001464007999996408999999988184479999999998645831379678885045530689999970
Q gi|254780313|r   10 RRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT   89 (227)
Q Consensus        10 ~~~~~~~~~~k~~~~ss~~W~~r~~~D~y~~~Ak~~gyrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~   89 (227)
                      .+.+...++.|.+++|+.+|+.||.+|||+++||.++|||||||||+|||+||++|+|+++|||+|||||+|||||.+++
T Consensus        12 ~r~~f~~i~sr~rs~s~~~wl~Rql~Dpy~kkAkv~NyR~RsAFKLiEindKy~~l~p~~~VlD~G~APGsWsQVavqr~   91 (232)
T KOG4589          12 IRSMFGTIGSRYRSKSLHRWLTRQLKDPYVKKAKVQNYRSRSAFKLIEINDKYRFLRPEDTVLDCGAAPGSWSQVAVQRV   91 (232)
T ss_pred             EHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEEEHHHCCCCCCCCEEEECCCCCCHHHHHHHHHH
T ss_conf             01210334444566408899988613788888877515666543421541011436888779981678871899998862


Q ss_pred             CCCCCCEEEEEECCCCCCCCCCCEEEEC-CCCHHHHHHHHHHHCCC-CCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf             6878832786411213334698178301-12207999999973138-874897532021102221015788989998898
Q gi|254780313|r   90 GSNANNTRVVAIDILDMEPILGVKFFKF-DFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATF  167 (227)
Q Consensus        90 ~~~~~~~~VigVDl~~~~~i~gv~~~~g-Di~~~~~~~~i~~~l~~-~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~  167 (227)
                      +++|   .|+||||+++.|++|+.+++| ||+++.+..+|.+.+.+ ++|+||||||||.||.+..||+++++||.++|.
T Consensus        92 ~p~g---~v~gVDllh~~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~  168 (232)
T KOG4589          92 NPNG---MVLGVDLLHIEPPEGATIIQGNDVTDPETYRKIFEALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALL  168 (232)
T ss_pred             CCCC---EEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             8874---2888743311488876401432468888999999867998321887135778767512437899999999998


Q ss_pred             HHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEECCCCC
Q ss_conf             764114877469999305999899999998625846997686657558249898307559
Q gi|254780313|r  168 FALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK  227 (227)
Q Consensus       168 ~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~~~F~~V~~~KP~aSR~~S~E~Ylv~~gfKk  227 (227)
                      +|+..+.|+|+||||+|+|++..+|.+.|...|+.|+.+||.|||++|+|.|+||++||.
T Consensus       169 ~al~~~~p~g~fvcK~w~g~e~~~l~r~l~~~f~~Vk~vKP~Asr~eS~E~y~v~~~~k~  228 (232)
T KOG4589         169 FALTLLIPNGSFVCKLWDGSEEALLQRRLQAVFTNVKKVKPDASRDESAETYLVCLNFKG  228 (232)
T ss_pred             HHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCEEECCCCCCCCCCCEEEEEEECCC
T ss_conf             863214778579999704973289999999986321762775455545011653221257


No 5  
>KOG1099 consensus
Probab=100.00  E-value=0  Score=403.33  Aligned_cols=193  Identities=39%  Similarity=0.582  Sum_probs=184.0

Q ss_pred             CCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCC-----CCCEEEEEECCCCCCC
Q ss_conf             08999999988184479999999998645831379678885045530689999970687-----8832786411213334
Q gi|254780313|r   34 INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSN-----ANNTRVVAIDILDMEP  108 (227)
Q Consensus        34 ~~D~y~~~Ak~~gyrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~-----~~~~~VigVDl~~~~~  108 (227)
                      .+|-|||+||++|||+||||||++||+.|+||+-..+|||||||||+||||+++++...     ..+-+||+||||+|.|
T Consensus         8 KRDiYYRlAKe~gwRARSAFKLlqideef~i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaP   87 (294)
T KOG1099           8 KRDIYYRLAKENGWRARSAFKLLQIDEEFQIFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAP   87 (294)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHCCEEEEECCCCCC
T ss_conf             46799998876061577677775013666277603677435308983999999997324887420116279985565776


Q ss_pred             CCCCEEEECCCCHHHHHHHHHHHCCC-CCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCC
Q ss_conf             69817830112207999999973138-87489753202110222101578898999889876411487746999930599
Q gi|254780313|r  109 ILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGG  187 (227)
Q Consensus       109 i~gv~~~~gDi~~~~~~~~i~~~l~~-~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~  187 (227)
                      |+||..+||||++.+|.+.|.+++++ ++|+|+||+||++||.++.|++.+.+|..+||.++..+|++||+||.|+|+|.
T Consensus        88 I~GV~qlq~DIT~~stae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~  167 (294)
T KOG1099          88 IEGVIQLQGDITSASTAEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGR  167 (294)
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEECCCCEEEHHHHCCC
T ss_conf             67627850455777689999998579976678847998744532088999999999998777420147875255464267


Q ss_pred             CHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEECCCC
Q ss_conf             989999999862584699768665755824989830755
Q gi|254780313|r  188 TTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR  226 (227)
Q Consensus       188 ~~~~l~~~l~~~F~~V~~~KP~aSR~~S~E~Ylv~~gfK  226 (227)
                      ++..|...|+.+|++|...||.|||..|-|.|+||.||-
T Consensus       168 ~tslLysql~~ff~kv~~~KPrsSR~sSiEaFvvC~~~~  206 (294)
T KOG1099         168 DTSLLYSQLRKFFKKVTCAKPRSSRNSSIEAFVVCLGYC  206 (294)
T ss_pred             CHHHHHHHHHHHHHCEEEECCCCCCCCCCEEEEEECCCC
T ss_conf             507899999998506156047766666301466641568


No 6  
>pfam01728 FtsJ FtsJ-like methyltransferase. This family consists of FtsJ from various bacterial and archaeal sources FtsJ is a methyltransferase, but actually has no effect on cell division. FtsJ's substrate is the 23S rRNA. The 1.5 A crystal structure of FtsJ in complex with its cofactor S-adenosylmethionine revealed that FtsJ has a methyltransferase fold. This family also includes the N terminus of flaviviral NS5 protein. It has been hypothesized that the N-terminal domain of NS5 is a methyltransferase involved in viral RNA capping.
Probab=100.00  E-value=0  Score=383.66  Aligned_cols=175  Identities=39%  Similarity=0.600  Sum_probs=168.6

Q ss_pred             CHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEECCCCHHHHHH
Q ss_conf             44799999999986458313796788850455306899999706878832786411213334698178301122079999
Q gi|254780313|r   47 WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWE  126 (227)
Q Consensus        47 yrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~i~gv~~~~gDi~~~~~~~  126 (227)
                      |||||||||+|||++|+|++++.+||||||||||||||+.++..    .++|+|||+++|+|++++.+++|||++.++++
T Consensus         1 y~sRa~~KL~ei~~~~~l~~~~~~vlDLg~aPGgwsq~~~~~~~----~~~v~~vDl~~~~~~~~~~~i~gDi~~~~~~~   76 (176)
T pfam01728         1 YVSRAAFKLLEIDERFGLKPGGKTVLDLGAAPGGFSQVLLERGA----KGRVVAVDLGPMKPIQGVTFLRGDITDPETLE   76 (176)
T ss_pred             CCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHCC----CCEEEEEECCCCCCCCCCEEECCCCCCHHHHH
T ss_conf             96749999999999769887999999968999769999998566----87399997344656778456516766878999


Q ss_pred             HHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHH-HHHHHHHHHCCEEEE
Q ss_conf             9997313887489753202110222101578898999889876411487746999930599989-999999862584699
Q gi|254780313|r  127 FIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTN-DILCLLKKHFQKVIH  205 (227)
Q Consensus       127 ~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~-~l~~~l~~~F~~V~~  205 (227)
                      .+.+.+.+++|+|+||||||+||++..||.++++|++.++.+|..+|++||+||+|+|+|.+.. ++++.++.+|++|++
T Consensus        77 ~i~~~~~~~~DlV~sD~a~~~~g~~~~d~~~s~~L~~~~l~~a~~~L~~gG~fv~K~f~~~~~~~~l~~~l~~~F~~v~~  156 (176)
T pfam01728        77 KLLELLPGKVDLVLCDGAPNVSGLENTDSFISLRLVLAALLLALEVLRPGGNFVVKLFKGFEFSVELLYKLKKGFEKVGI  156 (176)
T ss_pred             HHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHCCCEEEE
T ss_conf             99997399846897336656567733478999999999999999982437639999982787649999999831788999


Q ss_pred             ECCCCCCCCCCEEEEEECCC
Q ss_conf             76866575582498983075
Q gi|254780313|r  206 VKPVASRAESVEMFLLAKGF  225 (227)
Q Consensus       206 ~KP~aSR~~S~E~Ylv~~gf  225 (227)
                      +||.|||++|+|+|+||+||
T Consensus       157 ~KP~aSR~~s~E~Yiv~~~f  176 (176)
T pfam01728       157 FKPPASRPSSSEEYLVCLGF  176 (176)
T ss_pred             ECCCCCCCCCCEEEEEECCC
T ss_conf             86899799886699996289


No 7  
>KOG1098 consensus
Probab=100.00  E-value=0  Score=386.62  Aligned_cols=191  Identities=32%  Similarity=0.476  Sum_probs=184.9

Q ss_pred             HCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCC
Q ss_conf             40899999998818447999999999864583137967888504553068999997068788327864112133346981
Q gi|254780313|r   33 HINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGV  112 (227)
Q Consensus        33 ~~~D~y~~~Ak~~gyrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~i~gv  112 (227)
                      ++.|.||++||+.||||||||||+|||++|.+|.++..|||||||||||+|||++.++.   ++.||||||.||.|++||
T Consensus        10 ~r~Dk~Y~lAke~GyrsRsaFKLlQln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~pv---~slivGvDl~pikp~~~c   86 (780)
T KOG1098          10 GRLDKYYRLAKELGYRSRSAFKLLQLNKKYKFLEKAHVVLDLCAAPGGWLQVASQSMPV---GSLIVGVDLVPIKPIPNC   86 (780)
T ss_pred             CCCHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCHHEECCCCCCHHHHHHHHHCCC---CCEEEEEEEEECCCCCCC
T ss_conf             76339999999843267877899988877510034411100025874799999976788---734887520112468763


Q ss_pred             EEEECCCCHHHHHHHHHHHCC-CCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHH
Q ss_conf             783011220799999997313-8874897532021102221015788989998898764114877469999305999899
Q gi|254780313|r  113 KFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND  191 (227)
Q Consensus       113 ~~~~gDi~~~~~~~~i~~~l~-~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~  191 (227)
                      ..++.||+...+...++..+. .++|+||+|||||++|+|..|.+.+..|.+.+|.+|+.+|+.||+||.|+|...++..
T Consensus        87 ~t~v~dIttd~cr~~l~k~l~t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtkvfrs~dy~~  166 (780)
T KOG1098          87 DTLVEDITTDECRSKLRKILKTWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTKVFRSEDYNG  166 (780)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH
T ss_conf             21454642888888999998727776784058886431678999986788999999999999746843044556776118


Q ss_pred             HHHHHHHHCCEEEEECCCCCCCCCCEEEEEECCCC
Q ss_conf             99999862584699768665755824989830755
Q gi|254780313|r  192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR  226 (227)
Q Consensus       192 l~~~l~~~F~~V~~~KP~aSR~~S~E~Ylv~~gfK  226 (227)
                      |++.+...|.+|..+||.|||.+|.|+|+||.||.
T Consensus       167 ll~v~~qLf~kv~~tkp~asr~~saeif~vc~~~l  201 (780)
T KOG1098         167 LLRVFGQLFKKVEATKPAASRSESAEIFVVCLGYL  201 (780)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHCCCEEEEEECCC
T ss_conf             99999999999970488143320012355320014


No 8  
>KOG3673 consensus
Probab=99.92  E-value=5.8e-25  Score=176.88  Aligned_cols=193  Identities=21%  Similarity=0.321  Sum_probs=148.6

Q ss_pred             CCCHHHHHHHHH----------CCHHHHHHHHHHHHHHCCCCC--CC----C-----E------EEEEECCCCHHHHHHH
Q ss_conf             089999999881----------844799999999986458313--79----6-----7------8885045530689999
Q gi|254780313|r   34 INDPYVQRAQLE----------GWRARSAYKLLQINEKHQILQ--SN----R-----R------IVDLGSSPGSWSQVAA   86 (227)
Q Consensus        34 ~~D~y~~~Ak~~----------gyrsRaafKL~eId~kf~l~k--~g----~-----~------VlDLGaaPGgWsQva~   86 (227)
                      .+|.=-++|+..          =+-.|||.|+..||.-|+.+=  |-    .     +      .-|.||+|||||+|+.
T Consensus       207 l~d~e~RrARtRaNPyEtIrs~fFlNRAAmKmANmD~i~d~mftNpRdp~g~~lva~~~~eLlYFaDvCAGPGGFSEYvL  286 (845)
T KOG3673         207 LSDKELRRARTRANPYETIRSAFFLNRAAMKMANMDKIYDWMFTNPRDPLGESLVAENVEELLYFADVCAGPGGFSEYVL  286 (845)
T ss_pred             CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHH
T ss_conf             27388887762178488888898763888875037888888747988734574346547777777866058886313000


Q ss_pred             --HHHCCCCCCEEEEEEC-CC----------CCCCCCCCEEEECCCCHHHHHHHHHHHCC-----CCCCEEEECCCHHHC
Q ss_conf             --9706878832786411-21----------33346981783011220799999997313-----887489753202110
Q gi|254780313|r   87 --RITGSNANNTRVVAID-IL----------DMEPILGVKFFKFDFLDLDSWEFIRQAIG-----GNPDLVLSDMAYPTI  148 (227)
Q Consensus        87 --~~~~~~~~~~~VigVD-l~----------~~~~i~gv~~~~gDi~~~~~~~~i~~~l~-----~~~DlVlSDmapn~S  148 (227)
                        +.....|.+-+.-|-+ ..          -.++..|+.- .|||+++.+++.+..++.     ..+++.|+|++..+-
T Consensus       287 wRK~w~AKGFGfTL~G~nDFKLekF~aaS~e~FetfYG~k~-dGdi~dp~Nidsl~~~i~~~T~~~GVHf~MADGGFSVE  365 (845)
T KOG3673         287 WRKFWNAKGFGFTLAGKNDFKLEKFTAASQEFFETFYGTKD-DGDIMDPVNIDSLEAHISRGTSGLGVHFMMADGGFSVE  365 (845)
T ss_pred             HHHHHCCCCCEEEECCCCCCCHHHHHHCCHHHHHCCCCCCC-CCCCCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCC
T ss_conf             03342246641573068742024333038776430036368-87727821168999998628987543899706872301


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECC--CCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEECCCC
Q ss_conf             22210157889899988987641148774699993059--9989999999862584699768665755824989830755
Q gi|254780313|r  149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG--GTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR  226 (227)
Q Consensus       149 G~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G--~~~~~l~~~l~~~F~~V~~~KP~aSR~~S~E~Ylv~~gfK  226 (227)
                      |...++++.|-+|.++++-.|+.++++||+|+||+|+=  +-..-|+.+|..+|+.|..+||.+||+.++|.|+||+|.|
T Consensus       366 GQeNiQEILSKqLyLCQfL~aL~IvR~gG~F~CK~FDlFTPFSVGLvYLmy~Cfq~v~l~KP~tSRPANSERYivCKglr  445 (845)
T KOG3673         366 GQENIQEILSKQLYLCQFLVALCIVREGGNFFCKLFDLFTPFSVGLVYLMYVCFQSVSLHKPHTSRPANSERYIVCKGLR  445 (845)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHEEEECCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCHH
T ss_conf             16669999998899999988860561498578864101675146699999999888631267788988774169861113


Q ss_pred             C
Q ss_conf             9
Q gi|254780313|r  227 K  227 (227)
Q Consensus       227 k  227 (227)
                      +
T Consensus       446 ~  446 (845)
T KOG3673         446 K  446 (845)
T ss_pred             H
T ss_conf             4


No 9  
>KOG3674 consensus
Probab=99.89  E-value=4.8e-23  Score=164.90  Aligned_cols=184  Identities=22%  Similarity=0.251  Sum_probs=143.4

Q ss_pred             HHHCCHHHHHHHHHHHHHHCCCC-CCCC--EEEEEECCCCHHHHHHH----HHHCCCCCCEEEEEECCCCCCC-------
Q ss_conf             88184479999999998645831-3796--78885045530689999----9706878832786411213334-------
Q gi|254780313|r   43 QLEGWRARSAYKLLQINEKHQIL-QSNR--RIVDLGSSPGSWSQVAA----RITGSNANNTRVVAIDILDMEP-------  108 (227)
Q Consensus        43 k~~gyrsRaafKL~eId~kf~l~-k~g~--~VlDLGaaPGgWsQva~----~~~~~~~~~~~VigVDl~~~~~-------  108 (227)
                      -..-...-|..||-||-+.|.++ +++.  +-+.||.|||.|..-..    ..-+++--.++-.+-.|.|--+       
T Consensus       105 ~~ae~~T~AwcKl~Eil~~fpl~~~ea~~inS~HLCEaPGaFIaslnhyL~s~r~k~~~~W~W~anTLNPY~E~n~~~~m  184 (696)
T KOG3674         105 FIAENVTKAWCKLCEILEVFPLDIFEASSINSFHLCEAPGAFIASLNHYLMSSRGKNMSYWKWGANTLNPYFENNSCFDM  184 (696)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCHHHHH
T ss_conf             77777799999999998855766533334453233058607999999999860377653455134766710036458887


Q ss_pred             ----------CCCCEEE---ECCCCHHHHHHHHHH--HCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf             ----------6981783---011220799999997--3138874897532021102221015788989998898764114
Q gi|254780313|r  109 ----------ILGVKFF---KFDFLDLDSWEFIRQ--AIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEML  173 (227)
Q Consensus       109 ----------i~gv~~~---~gDi~~~~~~~~i~~--~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~L  173 (227)
                                +..=.|-   .|||.+......+.+  .+.|.+|+|++|++.|+.|+..-.++.-..|..+....|+.+|
T Consensus       185 i~DDr~I~~Tld~WyFgpd~tGdi~~~~~~~~l~~~v~~~gtvdLVTADGS~dcqg~pgeqE~iVssL~~aEV~~AL~~L  264 (696)
T KOG3674         185 IIDDRHIRPTLDQWYFGPDDTGDIEKFTEEYLLKQEVKLAGTVDLVTADGSTDCQGKPGEQESIVSSLISAEVEVALKLL  264 (696)
T ss_pred             HCCCHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             60203310330002217887751888788999999987602378994378644579985389999999999999999998


Q ss_pred             CCCCEEEEEEECC--CCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEECCCC
Q ss_conf             8774699993059--9989999999862584699768665755824989830755
Q gi|254780313|r  174 NIGGDFLVKTFQG--GTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR  226 (227)
Q Consensus       174 k~gG~fV~K~F~G--~~~~~l~~~l~~~F~~V~~~KP~aSR~~S~E~Ylv~~gfK  226 (227)
                      +.||+||+|+|.-  .-...++..+.-.|++|++|||.+||+.|+|+|+||.|||
T Consensus       265 ~~gG~filKmft~fe~cS~~lmylLnc~F~~Vh~fKPatSk~GnSEvYVvCl~yK  319 (696)
T KOG3674         265 RRGGRFILKMFTFFEKCSRDLMYLLNCNFSSVHAFKPATSKPGNSEVYVVCLGYK  319 (696)
T ss_pred             HCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCC
T ss_conf             5488551999999998659999998723766311353357999861799952567


No 10 
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.33  E-value=5e-12  Score=95.83  Aligned_cols=129  Identities=24%  Similarity=0.338  Sum_probs=95.5

Q ss_pred             CCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC-C----------CCCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf             8313796788850455306899999706878832786411213-3----------3469817830112207999999973
Q gi|254780313|r   63 QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-M----------EPILGVKFFKFDFLDLDSWEFIRQA  131 (227)
Q Consensus        63 ~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~-~----------~~i~gv~~~~gDi~~~~~~~~i~~~  131 (227)
                      --++||++||||||++|--+-.+++++|+.|   +|+|||+.+ |          ..+.||.|.+||+.+..       +
T Consensus        69 a~l~pGe~VLDLGcG~G~d~~~aA~~VG~~G---~ViGVD~s~~ML~~Ar~~a~~~G~~NVeF~~Gdae~LP-------l  138 (258)
T PRK11873         69 AELKPGETVLDLGSGAGFDCFLAARRVGPTG---KVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALP-------V  138 (258)
T ss_pred             CCCCCCCEEEEECCCCCHHHHHHHHHHCCCC---EEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCC-------C
T ss_conf             6579999899947887775999999869997---79998599999999999999759975599995553136-------8


Q ss_pred             CCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE-E--------------------ECCC-CH
Q ss_conf             138874897532021102221015788989998898764114877469999-3--------------------0599-98
Q gi|254780313|r  132 IGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK-T--------------------FQGG-TT  189 (227)
Q Consensus       132 l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K-~--------------------F~G~-~~  189 (227)
                      .++.||+|+|....|.+-    |-.       .++.-+.++|||||.|++- +                    ..|. ..
T Consensus       139 ~D~SfDvViSncVlnl~p----Dk~-------~vl~E~~RVLKPGGRl~ISDiv~~~~lP~~~r~d~~l~~~CiaGA~~~  207 (258)
T PRK11873        139 ADGSVDVIISNCVINLSP----DKE-------RVFREAFRVLKPGGRFAISDVVLTGELPEELRNDAALYAGCVAGALSV  207 (258)
T ss_pred             CCCCEEEEEECCEEECCC----CHH-------HHHHHHHHHCCCCCEEEEEEEECCCCCCHHHHHCHHHHHCCCCCCCCH
T ss_conf             988351998824676079----879-------999999996288978999974127779999985989873120366859


Q ss_pred             HHHHHHHH-HHCCEEEEECCCCCC
Q ss_conf             99999998-625846997686657
Q gi|254780313|r  190 NDILCLLK-KHFQKVIHVKPVASR  212 (227)
Q Consensus       190 ~~l~~~l~-~~F~~V~~~KP~aSR  212 (227)
                      .+++..++ .-|..|.+.+-..||
T Consensus       208 ~~~~~~l~~aGF~~i~i~~~~~~~  231 (258)
T PRK11873        208 EEYLAMLAEAGFVDITIEPKRDSR  231 (258)
T ss_pred             HHHHHHHHHCCCCCEEEEECHHHH
T ss_conf             999999997699832998553279


No 11 
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=99.33  E-value=3.9e-11  Score=90.24  Aligned_cols=130  Identities=20%  Similarity=0.249  Sum_probs=83.9

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CCC--CCCCEEEECCCCHHHHHHHHHHHCC
Q ss_conf             13796788850455306899999706878832786411213---------334--6981783011220799999997313
Q gi|254780313|r   65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------MEP--ILGVKFFKFDFLDLDSWEFIRQAIG  133 (227)
Q Consensus        65 ~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~~--i~gv~~~~gDi~~~~~~~~i~~~l~  133 (227)
                      .+||++|||+||||||-|-.++..++.   .|.|+|+|+.+         ++.  +.++.....|-     . .+...+.
T Consensus       111 p~pge~VLDlCAAPGGKtt~la~~m~~---~G~lvAnd~~~~R~~~L~~n~~r~G~~n~~vt~~d~-----~-~~~~~~~  181 (471)
T PRK11933        111 DNAPQRVLDMAAAPGSKTTQIAALMNN---QGALVANEYSASRVKVLHANISRCGVSNVALTHFDG-----R-VFGAALP  181 (471)
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHCCC---CCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCH-----H-HHHHHCC
T ss_conf             899998999577854899999997589---966999838899999999999971998479993586-----6-7403230


Q ss_pred             CCCCEEEECCCHHHCCCCCC----H---------HHHHHHHHHHHHHHHHHCCCCCCEEEEEE--ECCCCHHHHH-HHHH
Q ss_conf             88748975320211022210----1---------57889899988987641148774699993--0599989999-9998
Q gi|254780313|r  134 GNPDLVLSDMAYPTIGHRKI----D---------HLRTMSLCEAATFFALEMLNIGGDFLVKT--FQGGTTNDIL-CLLK  197 (227)
Q Consensus       134 ~~~DlVlSDmapn~SG~~~~----D---------~~~~~~L~~~al~~A~~~Lk~gG~fV~K~--F~G~~~~~l~-~~l~  197 (227)
                      +.||.||.|.  .|||....    |         ......+....|.-|..+|+|||.+|--+  |.-++-++.+ +.+.
T Consensus       182 ~~FD~ILvDa--PCSG~G~~rk~p~~~~~w~~~~~~~~~~~Q~~iL~~A~~~LkpGG~LVYSTCT~~peENE~vv~~~l~  259 (471)
T PRK11933        182 EMFDAILLDA--PCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKE  259 (471)
T ss_pred             CCCCEEEECC--CCCCCEEECCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHH
T ss_conf             1066799878--88887335559757641898799999999999999999873889689998179995667999999998


Q ss_pred             HHCCEEEE
Q ss_conf             62584699
Q gi|254780313|r  198 KHFQKVIH  205 (227)
Q Consensus       198 ~~F~~V~~  205 (227)
                      .+=+.|..
T Consensus       260 ~~p~~v~~  267 (471)
T PRK11933        260 TYGDAVEF  267 (471)
T ss_pred             HCCCCEEC
T ss_conf             68863310


No 12 
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.32  E-value=5.5e-12  Score=95.56  Aligned_cols=157  Identities=23%  Similarity=0.337  Sum_probs=106.6

Q ss_pred             HHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC------CCCCCCCEEEE
Q ss_conf             881844799999999986458313796788850455306899999706878832786411213------33469817830
Q gi|254780313|r   43 QLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD------MEPILGVKFFK  116 (227)
Q Consensus        43 k~~gyrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~------~~~i~gv~~~~  116 (227)
                      ..+.|.||++|||+++.+.|+|.-++..+||+|++.|||||++.++-     .-.|+|||.-.      ...-++|..+.
T Consensus        55 ~~~~yVSRG~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~g-----Ak~VyavDVG~~Ql~~kLR~d~rV~~~E  129 (245)
T COG1189          55 EEQPYVSRGGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRG-----AKHVYAVDVGYGQLHWKLRNDPRVIVLE  129 (245)
T ss_pred             CCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHCC-----CCEEEEEECCCCCCCHHHHCCCCEEEEE
T ss_conf             66676261899999999964868899789982678762999998758-----7479999703774378673598479985


Q ss_pred             C-CCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE---EC-------
Q ss_conf             1-122079999999731388748975320211022210157889899988987641148774699993---05-------
Q gi|254780313|r  117 F-DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT---FQ-------  185 (227)
Q Consensus       117 g-Di~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~---F~-------  185 (227)
                      . |+...+     .+.+.+.+|+++||.++           .|..+   +|-.+..+|+++|-++.=+   |+       
T Consensus       130 ~tN~r~l~-----~~~~~~~~d~~v~DvSF-----------ISL~~---iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~  190 (245)
T COG1189         130 RTNVRYLT-----PEDFTEKPDLIVIDVSF-----------ISLKL---ILPALLLLLKDGGDLVLLVKPQFEAGREQVG  190 (245)
T ss_pred             CCCHHHCC-----HHHCCCCCCEEEEEEEH-----------HHHHH---HHHHHHHHCCCCCEEEEEECCHHHHHHHHCC
T ss_conf             27831189-----87817677847996423-----------31998---8899997427886389973655554043227


Q ss_pred             ------CCC-----HHHHHHHHHHH-CCEEEEEC-CCCCCCCCCEEEEEEC
Q ss_conf             ------999-----89999999862-58469976-8665755824989830
Q gi|254780313|r  186 ------GGT-----TNDILCLLKKH-FQKVIHVK-PVASRAESVEMFLLAK  223 (227)
Q Consensus       186 ------G~~-----~~~l~~~l~~~-F~~V~~~K-P~aSR~~S~E~Ylv~~  223 (227)
                            ...     ...+.+.+... |....+.+ |...-..+.|.++..+
T Consensus       191 kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl~~Spi~G~~GNiE~l~~~~  241 (245)
T COG1189         191 KKGVVRDPKLHAEVLSKIENFAKELGFQVKGLIKSPIKGGKGNIEFLLLLK  241 (245)
T ss_pred             CCCEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEEEEE
T ss_conf             686344801589999999988864595786557267767878675624110


No 13 
>PRK11760 putative RNA 2'-O-ribose methyltransferase; Provisional
Probab=99.26  E-value=1.2e-11  Score=93.40  Aligned_cols=131  Identities=24%  Similarity=0.248  Sum_probs=86.6

Q ss_pred             HHHCCHHHHHHHHHHHHHHC-------CCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCC----CCC
Q ss_conf             88184479999999998645-------8313796788850455306899999706878832786411213334----698
Q gi|254780313|r   43 QLEGWRARSAYKLLQINEKH-------QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP----ILG  111 (227)
Q Consensus        43 k~~gyrsRaafKL~eId~kf-------~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~----i~g  111 (227)
                      --..-+|||+.||.|--..|       ..+++|++.|||||||||||...+++      +..|.|||--+|.|    -+.
T Consensus       179 ~P~~APSRStLKLEEA~~~Fip~~e~~~rl~~Gm~aVDLGAaPGGWT~qLv~r------g~~V~AVDnG~m~~~L~~~~~  252 (356)
T PRK11760        179 FPADAPSRSTLKLEEAFHVFIPREEWDERLASGMRAVDLGACPGGWTYQLVRR------GMFVTAVDNGPMAESLMDTGQ  252 (356)
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCHHHHHHHCCCCCEEEECCCCCCHHHHHHHHC------CCEEEEECCCCCCHHHHCCCC
T ss_conf             89889846888799999986798676532169975875586997058999977------988998658767875752887


Q ss_pred             CEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCC----CEEEEEEECCC
Q ss_conf             17830112207999999973138874897532021102221015788989998898764114877----46999930599
Q gi|254780313|r  112 VKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIG----GDFLVKTFQGG  187 (227)
Q Consensus       112 v~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~g----G~fV~K~F~G~  187 (227)
                      |+.++.|-+.-.-       -..++|.++|||.-        +..+..+|       ...+|..|    -.|-.|+=.-.
T Consensus       253 V~H~~~dgf~f~P-------~~~~vdwlVCDmve--------kP~rva~l-------m~~Wl~~gw~~~aifnLKLPMKk  310 (356)
T PRK11760        253 VEHLRADGFKFRP-------TRKNVDWLVCDMVE--------KPARVAEL-------MAQWLVNGWCREAIFNLKLPMKK  310 (356)
T ss_pred             EEEEECCCEEECC-------CCCCEEEEEEECCC--------CHHHHHHH-------HHHHHHCCCCHHEEEEECCCCCC
T ss_conf             5788146705636-------99852089970536--------88999999-------99987556002057885167766


Q ss_pred             C---HHHHHHHHHHHCC
Q ss_conf             9---8999999986258
Q gi|254780313|r  188 T---TNDILCLLKKHFQ  201 (227)
Q Consensus       188 ~---~~~l~~~l~~~F~  201 (227)
                      .   ..+.+..+...|.
T Consensus       311 R~~eV~~~l~~i~~~l~  327 (356)
T PRK11760        311 RYEEVRQCLERIEEQLD  327 (356)
T ss_pred             CHHHHHHHHHHHHHHHH
T ss_conf             39999999999999998


No 14 
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.19  E-value=1.7e-10  Score=86.28  Aligned_cols=116  Identities=22%  Similarity=0.280  Sum_probs=87.5

Q ss_pred             HHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC-C-----CCCCCCEEE
Q ss_conf             9881844799999999986458313796788850455306899999706878832786411213-3-----346981783
Q gi|254780313|r   42 AQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-M-----EPILGVKFF  115 (227)
Q Consensus        42 Ak~~gyrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~-~-----~~i~gv~~~  115 (227)
                      .+-.+.|+|-++.|++--   . ..++.+||||||+||--|+.++++.+    ++.|+|||..+ |     +..+++.|.
T Consensus        10 ~rf~~~r~rp~~DLl~~l---~-~~~~~~vlDlGCG~G~~t~~l~~r~p----~a~v~GiD~S~~Ml~~Ar~~~~~~~f~   81 (252)
T PRK01683         10 LQFEAERTRPAVELLARV---P-LENVEYVADLGCGPGNSTALLHQRWP----AARITGIDSSPAMLAEARQALPDCQFV   81 (252)
T ss_pred             HHHHHHHHCHHHHHHHCC---C-CCCCCEEEEECCCCCHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHCCCCEEE
T ss_conf             988877646399998418---8-88999899937749899999999779----987999989899999999758998387


Q ss_pred             ECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf             011220799999997313887489753202110222101578898999889876411487746999930
Q gi|254780313|r  116 KFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF  184 (227)
Q Consensus       116 ~gDi~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F  184 (227)
                      ++|+.+..        ....+|+|.|-++-    +|--||...       +.-....|+|||.|++-+=
T Consensus        82 ~~D~~~~~--------~~~~~D~ifSNaal----hW~~d~~~~-------~~~~~~~L~PGG~la~Q~p  131 (252)
T PRK01683         82 EADIRNWQ--------PEQALDLIYANASL----QWLPDHYEL-------FPHLVSLLAPQGVLAVQMP  131 (252)
T ss_pred             ECCHHCCC--------CCCCCCEEEEEEEH----HHCCCHHHH-------HHHHHHHCCCCCEEEEECC
T ss_conf             25042078--------76787889561004----507877999-------9999982487879999889


No 15 
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.19  E-value=1.9e-10  Score=85.91  Aligned_cols=123  Identities=20%  Similarity=0.208  Sum_probs=82.8

Q ss_pred             CCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CCCCC-CCEEEECCCCHHHHHHHHHHHCCCC
Q ss_conf             3796788850455306899999706878832786411213---------33469-8178301122079999999731388
Q gi|254780313|r   66 QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------MEPIL-GVKFFKFDFLDLDSWEFIRQAIGGN  135 (227)
Q Consensus        66 k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~~i~-gv~~~~gDi~~~~~~~~i~~~l~~~  135 (227)
                      ++|.+|||+||||||-|-.+++. ++   .+.|+|+|+.+         ++.+. ++....+|...+..     .....+
T Consensus       244 ~~g~~VLD~CAaPGGKt~~la~~-~~---~~~v~A~D~~~~Rl~~l~~n~~Rlg~~~~v~~~d~~~~~~-----~~~~~~  314 (428)
T PRK10901        244 QNGEHILDLCAAPGGKTTHILEV-AP---EAQVLAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQ-----WCGEQQ  314 (428)
T ss_pred             CCCCEEEEECCCCCHHHHHHHHH-CC---CCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHH-----HCCCCC
T ss_conf             88987987168876689999996-45---8928999698889999999999759973999776557233-----134456


Q ss_pred             CCEEEECCCHHHCCCCCC-------------HHHHHHHHHHHHHHHHHHCCCCCCEEE---EEEECCCCHHHHHHHHHHH
Q ss_conf             748975320211022210-------------157889899988987641148774699---9930599989999999862
Q gi|254780313|r  136 PDLVLSDMAYPTIGHRKI-------------DHLRTMSLCEAATFFALEMLNIGGDFL---VKTFQGGTTNDILCLLKKH  199 (227)
Q Consensus       136 ~DlVlSDmapn~SG~~~~-------------D~~~~~~L~~~al~~A~~~Lk~gG~fV---~K~F~G~~~~~l~~~l~~~  199 (227)
                      ||.||.| | .|||...+             |-.....|....|+-|..+|+|||.+|   |-++.-++...+.+.|+++
T Consensus       315 fD~ILlD-a-PCSg~G~lrR~Pdikw~~~~~di~~l~~lQ~~iL~~a~~~lk~gG~LvYsTCSi~~eENe~~I~~FL~~~  392 (428)
T PRK10901        315 FDRILLD-A-PCSATGVIRRHPDIKWLRRDRDIAELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSQQIKAFLQRT  392 (428)
T ss_pred             CCEEEEC-C-CCCCCEEECCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHC
T ss_conf             7879975-8-9888724446854211289999999999999999999986688988999989999577899999999859


No 16 
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=99.14  E-value=9.8e-10  Score=81.46  Aligned_cols=127  Identities=23%  Similarity=0.273  Sum_probs=85.5

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CC--CCCCCEEEECCCCHHHHHHHHHHHC-
Q ss_conf             13796788850455306899999706878832786411213---------33--4698178301122079999999731-
Q gi|254780313|r   65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------ME--PILGVKFFKFDFLDLDSWEFIRQAI-  132 (227)
Q Consensus        65 ~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~--~i~gv~~~~gDi~~~~~~~~i~~~l-  132 (227)
                      .+||..|||+||||||-|-.+++.+.+.+  +.|+|+|..+         ++  .+.++..+..|-....     .... 
T Consensus       154 p~pge~VlD~cAAPGGKTthla~~~~~~~--~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~-----~~~~~  226 (355)
T COG0144         154 PKPGERVLDLCAAPGGKTTHLAELMENEG--AIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLA-----ELLPG  226 (355)
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHCCCCC--CEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCC-----CCCCC
T ss_conf             99979688807999769999999668998--769974498789999999999719983489951330143-----11345


Q ss_pred             CCCCCEEEECCCHHHCCCCCC-------------HHHHHHHHHHHHHHHHHHCCCCCCEEE---EEEECCCCHHHHHHHH
Q ss_conf             388748975320211022210-------------157889899988987641148774699---9930599989999999
Q gi|254780313|r  133 GGNPDLVLSDMAYPTIGHRKI-------------DHLRTMSLCEAATFFALEMLNIGGDFL---VKTFQGGTTNDILCLL  196 (227)
Q Consensus       133 ~~~~DlVlSDmapn~SG~~~~-------------D~~~~~~L~~~al~~A~~~Lk~gG~fV---~K~F~G~~~~~l~~~l  196 (227)
                      .++||.||.|  +.|||...+             |......|....|.-|..+|++||.+|   |-++.-+++..+...+
T Consensus       227 ~~~fD~iLlD--aPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV~~~L  304 (355)
T COG0144         227 GEKFDRILLD--APCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVVERFL  304 (355)
T ss_pred             CCCCCEEEEC--CCCCCCEEECCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHCCHHHHHHHH
T ss_conf             5777859987--99987711335812320389999999999999999999984487988999902375002889999999


Q ss_pred             HHHC
Q ss_conf             8625
Q gi|254780313|r  197 KKHF  200 (227)
Q Consensus       197 ~~~F  200 (227)
                      +.+.
T Consensus       305 ~~~~  308 (355)
T COG0144         305 ERHP  308 (355)
T ss_pred             HHCC
T ss_conf             8589


No 17 
>PRK08317 hypothetical protein; Provisional
Probab=99.14  E-value=2e-10  Score=85.83  Aligned_cols=97  Identities=28%  Similarity=0.272  Sum_probs=72.9

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC----------CCCCCCEEEECCCCHHHHHHHHHHHCCC
Q ss_conf             137967888504553068999997068788327864112133----------3469817830112207999999973138
Q gi|254780313|r   65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM----------EPILGVKFFKFDFLDLDSWEFIRQAIGG  134 (227)
Q Consensus        65 ~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~----------~~i~gv~~~~gDi~~~~~~~~i~~~l~~  134 (227)
                      ++||++|||+||++|.++..+++++++.   ++|+|||+.+-          ....++.++++|+.+..       +-++
T Consensus        17 l~pG~~vLDiGcG~G~~~~~la~~~g~~---~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~lp-------~~d~   86 (241)
T PRK08317         17 VQPGERVLDVGCGPGNDLRELADRVGPE---GRVVGIDRSEAMLALARERAAGLLSNVEFVRGDADGLP-------FPDE   86 (241)
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHHCCC---CEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCHHHCC-------CCCC
T ss_conf             9997999996641749999999974999---78999969889999999998622896499955464358-------9888


Q ss_pred             CCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf             874897532021102221015788989998898764114877469999
Q gi|254780313|r  135 NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK  182 (227)
Q Consensus       135 ~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K  182 (227)
                      .||+|+|..+..-    .-|.       ..+|.-+.++|||||.+|+=
T Consensus        87 sfD~v~~~~~l~h----~~d~-------~~~l~e~~RvLkPGG~~vi~  123 (241)
T PRK08317         87 SFDAVRSDRVLQH----LEDP-------RRALAEMARVLRPGGRAVVL  123 (241)
T ss_pred             CCCEEEHHHHHHH----CCCH-------HHHHHHHHHHCCCCCEEEEE
T ss_conf             7045622115762----2589-------99999999981888389999


No 18 
>pfam01189 Nol1_Nop2_Fmu NOL1/NOP2/sun family.
Probab=99.09  E-value=2e-09  Score=79.56  Aligned_cols=126  Identities=22%  Similarity=0.295  Sum_probs=82.1

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CC--CCCCCEEEECCCCHHHHHHHHHHHCC
Q ss_conf             13796788850455306899999706878832786411213---------33--46981783011220799999997313
Q gi|254780313|r   65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------ME--PILGVKFFKFDFLDLDSWEFIRQAIG  133 (227)
Q Consensus        65 ~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~--~i~gv~~~~gDi~~~~~~~~i~~~l~  133 (227)
                      .+||..|||+||||||-|-.+++.+.+   .|.|+|+|+.+         ++  .+.++.....|.+...     ....+
T Consensus        82 p~~g~~VLD~CAaPGgKt~~la~l~~~---~g~i~A~D~~~~Rl~~l~~~~~r~g~~~~~~~~~d~~~~~-----~~~~~  153 (277)
T pfam01189        82 PQEDEFILDMCAAPGGKTTHIAELMKN---EGTVVAVDRNKQRLKRVYANIQRLGVFNIIVQEGDARQID-----QKLLG  153 (277)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHCCC---CCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCC-----CCCCC
T ss_conf             899998988367888169999987589---8779983797899999999999759974799966444557-----43466


Q ss_pred             CCCCEEEECCCHHHCCCCCC-------------HHHHHHHHHHHHHHHHHHCCCCCCEEEEE---EECCCCHHHHHHHHH
Q ss_conf             88748975320211022210-------------15788989998898764114877469999---305999899999998
Q gi|254780313|r  134 GNPDLVLSDMAYPTIGHRKI-------------DHLRTMSLCEAATFFALEMLNIGGDFLVK---TFQGGTTNDILCLLK  197 (227)
Q Consensus       134 ~~~DlVlSDmapn~SG~~~~-------------D~~~~~~L~~~al~~A~~~Lk~gG~fV~K---~F~G~~~~~l~~~l~  197 (227)
                      +.||.|+.|  +.+||...+             |-....++....|.-|...|+|||.+|-=   ++.-+....+...++
T Consensus       154 ~~fD~vLvD--aPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eENe~vV~~fL~  231 (277)
T pfam01189       154 GEFDRILLD--APCSGTGVIRRDPDIKWLRREADIAQLAELQKELLKAAWDLVKPGGVLVYSTCSVLPEENEAVIKYFLQ  231 (277)
T ss_pred             CCCCEEEEC--CCCCCCCEECCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHH
T ss_conf             666579972--898898634558531211999999999999999999999971769989999499998998999999998


Q ss_pred             HHC
Q ss_conf             625
Q gi|254780313|r  198 KHF  200 (227)
Q Consensus       198 ~~F  200 (227)
                      ++.
T Consensus       232 ~~~  234 (277)
T pfam01189       232 KRP  234 (277)
T ss_pred             HCC
T ss_conf             699


No 19 
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase; InterPro: IPR011023   This domain is found in archaeal, bacterial and eukaryotic proteins.    In the archaea and bacteria, they are primarily restricted to the euryarchaeota and proteobacteria respectively; where they are either described as either nucleolar protein or tRNA/rRNA cytosine-C5-methylase. They all have the S-adenosyl methionine (SAM) binding domain and are related to bacterial Fmu (16S rRNA m5C 967 methyltransferase) where the structure of the methyl transferase domain has been determined .    In the eukaryota, the majority are annotated as being 'nucleolar protein'. None of the eukaryotic members in this family have a the SAM binding signature. Despite this, the yeast Nop2p is a probable RNA m(5)C methyltransferase, essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis ; localised to the nucleolus and is essential for viability . Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing . There is substantial identity between Nop2p and human p120 (NOL1), which is also called the proliferation-associated nucleolar antigen , . .
Probab=99.04  E-value=2.1e-09  Score=79.35  Aligned_cols=129  Identities=20%  Similarity=0.281  Sum_probs=84.7

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC------CCCCC-----CCEEEECCCCHHHHHHHHHHHCCCC
Q ss_conf             796788850455306899999706878832786411213------33469-----8178301122079999999731388
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD------MEPIL-----GVKFFKFDFLDLDSWEFIRQAIGGN  135 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~------~~~i~-----gv~~~~gDi~~~~~~~~i~~~l~~~  135 (227)
                      ++++|||++|||||-|-+++.++.++   |.|+|+|.+.      +.+|.     ++..+.-|-     +.. .......
T Consensus        77 ~~~~vlD~AAaPGgKTT~is~~m~N~---G~i~Ane~~ksR~k~L~~NI~R~G~~n~~v~~~Dg-----R~f-~~~~~~~  147 (284)
T TIGR00446        77 EKERVLDMAAAPGGKTTQISALMKNE---GAIVANEVSKSRTKVLIANINRMGVLNVAVINVDG-----RKF-GAVVLKM  147 (284)
T ss_pred             CCCEEEEEECCCCCHHHHHHHHHCCC---CEEEEECCCCCCCHHHHHHHHHHHHEEEEEEECCC-----CHH-HHHHCCC
T ss_conf             88879997408896489999986588---51899737634106678655562100333241376-----300-1231443


Q ss_pred             ---CCEEEECCCHHHCCCCCC-------------HHHHHHHHHHHHHHHHHHCCCC----CCEEEEEE--ECCCCHHHHH
Q ss_conf             ---748975320211022210-------------1578898999889876411487----74699993--0599989999
Q gi|254780313|r  136 ---PDLVLSDMAYPTIGHRKI-------------DHLRTMSLCEAATFFALEMLNI----GGDFLVKT--FQGGTTNDIL  193 (227)
Q Consensus       136 ---~DlVlSDmapn~SG~~~~-------------D~~~~~~L~~~al~~A~~~Lk~----gG~fV~K~--F~G~~~~~l~  193 (227)
                         ||-||-| || |||..-+             |....-.|....+..|...|++    ||.+|-=+  ..-+|-++++
T Consensus       148 eifFD~iLLD-AP-CSG~GvI~KD~~~~~~~~~eD~~~~s~lQkeL~~~A~d~lk~nskhGGv~VYSTCsl~~eENE~V~  225 (284)
T TIGR00446       148 EIFFDRILLD-AP-CSGEGVIRKDPSRKKNRSEEDILEISKLQKELILAAFDALKPNSKHGGVLVYSTCSLEVEENEEVV  225 (284)
T ss_pred             EEEEEEEEEC-CC-CCCCCEEEECHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCHHHH
T ss_conf             0343214525-78-798833765723311477245776467679999999875044566688889850327712274899


Q ss_pred             HHHHHHCCEEEEE
Q ss_conf             9998625846997
Q gi|254780313|r  194 CLLKKHFQKVIHV  206 (227)
Q Consensus       194 ~~l~~~F~~V~~~  206 (227)
                      ..+.+....|..+
T Consensus       226 dy~L~~r~~v~e~  238 (284)
T TIGR00446       226 DYLLRKRPDVVEE  238 (284)
T ss_pred             HHHHCCCCCEEEE
T ss_conf             9986179970775


No 20 
>pfam01209 Ubie_methyltran ubiE/COQ5 methyltransferase family.
Probab=99.00  E-value=1.9e-09  Score=79.72  Aligned_cols=116  Identities=20%  Similarity=0.301  Sum_probs=79.5

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC-C----------CCCCCCEEEECCCCHHHHHHHHHHHCC
Q ss_conf             13796788850455306899999706878832786411213-3----------346981783011220799999997313
Q gi|254780313|r   65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-M----------EPILGVKFFKFDFLDLDSWEFIRQAIG  133 (227)
Q Consensus        65 ~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~-~----------~~i~gv~~~~gDi~~~~~~~~i~~~l~  133 (227)
                      +++|+.||||||++|-++..+++.+++.   +.|+|||+.+ |          ....++++++||..+...       -+
T Consensus        45 ~~~g~~vLDl~cGTG~~~~~l~~~~~~~---~~v~gvD~S~~ML~~a~~k~~~~~~~~i~~~~~da~~lpf-------~d  114 (233)
T pfam01209        45 VKRGNKFLDVAGGTGDWTFGLSDSAGSS---GKVVGLDINENMLKEGEKKAKEEGKYNIEFLQGNAEELPF-------ED  114 (233)
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHHCCC---CEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC-------CC
T ss_conf             9999989982540588999999984999---7499996999999999999985699983699821666886-------66


Q ss_pred             CCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHCC
Q ss_conf             88748975320211022210157889899988987641148774699993059998999999986258
Q gi|254780313|r  134 GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQ  201 (227)
Q Consensus       134 ~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~~~F~  201 (227)
                      ..||+|+|=.     |.+..+..      ..++.-+.++|||||.|++==|.-+.-.-+......+|.
T Consensus       115 ~sfD~v~~~f-----glrn~~d~------~~al~E~~RVLKPGG~l~ilefs~P~~~~~~~~~~~Y~~  171 (233)
T pfam01209       115 DSFDIVTISF-----GLRNFPDY------LKVLKEAFRVLKPGGRVVCLEFSKPENPLLSQAYELYFK  171 (233)
T ss_pred             CCCCHHHHHH-----HHHCCCCH------HHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             5657314210-----12125888------999999998727897899997888877799999999995


No 21 
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.98  E-value=2.8e-09  Score=78.57  Aligned_cols=103  Identities=22%  Similarity=0.315  Sum_probs=74.4

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC-C-----------CCCCCCEEEECCCCHHHHHHHHHHHC
Q ss_conf             13796788850455306899999706878832786411213-3-----------34698178301122079999999731
Q gi|254780313|r   65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-M-----------EPILGVKFFKFDFLDLDSWEFIRQAI  132 (227)
Q Consensus        65 ~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~-~-----------~~i~gv~~~~gDi~~~~~~~~i~~~l  132 (227)
                      ++||++|||+||++|-.+..+++..++   .+.|+|+|+.+ |           ...+++.++++|..+..       +-
T Consensus        49 ~~~g~~vLDvgcGTG~~~~~l~~~~~~---~~~v~g~D~S~~ML~~A~~k~~~~~~~~~i~~~~~da~~lp-------f~  118 (239)
T PRK00216         49 VRPGDKVLDLACGTGDLAIALAKAVGE---TGEVVGLDFSEGMLAVGREKLLDKGLSGNVEFVQGDAEALP-------FP  118 (239)
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHCCC---CCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCC-------CC
T ss_conf             899998988457763879999997299---76799991988999999999997389888507982355688-------87


Q ss_pred             CCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC
Q ss_conf             38874897532021102221015788989998898764114877469999305999
Q gi|254780313|r  133 GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT  188 (227)
Q Consensus       133 ~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~  188 (227)
                      ++.||+|++=.     |.+.....      ..+|.-+.++|+|||.|++==|.-++
T Consensus       119 d~sfD~v~~~f-----~l~~~~d~------~~~l~E~~RVLkPGG~l~ilefs~p~  163 (239)
T PRK00216        119 DNSFDAVTIAF-----GLRNVPDI------DKALREMYRVLKPGGRLVILEFSKPT  163 (239)
T ss_pred             CCCCCCCCCCC-----EEEECCCH------HHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf             66676500261-----56714867------99999999876648089999758999


No 22 
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase B; InterPro: IPR004573   This family consists of bacterial sequences related to Escherichia coli rsmB, an rRNA SAM-dependent methyltransferase. All, are likely to be functionally equivalent and based on comparison of core motifs would appear to belong to a larger superfamily of S-adenosyl-methionine (AdoMet)-dependent RNA m5C methyltransferases .    In E. coli, originally, the reading frame, encoding this protein, was interpreted as two reading frames, fmu and fmv. It has since been renamed, rsmB (Alternate Gene Symbols: rrmB, sun, fmu, fmv, yhdB). The recombinant protein, commonly referred to as Fmu, has been demonstrated to methylate only C967 of the 16S ribosomal RNA and to produce only m5C at that position. . The structure of the E. coli protein (Fmu) has been determined . Fmu contains three subdomains which share structural homology to DNA m5C methyltransferases and two RNA binding protein families. The N-terminal sequence of Fmu shares homology to another (noncatalytic) RNA binding protein, e.g. the ribosomal RNA antiterminator protein NusB (IPR011605 from INTERPRO). The catalytic lobe of Fmu, N1 domain, comprises the conserved core identified in all of the putative RNA m5C MTase sequences. Although the N1 domain is structurally homologous to known RNA binding proteins, there is no clear sequence motif that defines its role in RNA binding and recognition. At the functional centre of the catalytic lobe is the MTase domain of Fmu (residues 232-429), which adopts a fold typical of known AdoMet-dependent methyltransferases. In spite of the lack of a conserved RNA binding motif in the N1 domain, the close association of the N1 and MTase domains suggest that any RNA bound in the active site of the MTase domain is likely to interact with the N1 domain. ; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing.
Probab=98.93  E-value=2.8e-09  Score=78.61  Aligned_cols=126  Identities=18%  Similarity=0.228  Sum_probs=86.4

Q ss_pred             CCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC-----CCC-CC--CCE---EEECCCCHHHHHH---HHHHH
Q ss_conf             3796788850455306899999706878832786411213-----334-69--817---8301122079999---99973
Q gi|254780313|r   66 QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-----MEP-IL--GVK---FFKFDFLDLDSWE---FIRQA  131 (227)
Q Consensus        66 k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~-----~~~-i~--gv~---~~~gDi~~~~~~~---~i~~~  131 (227)
                      +++.+|||+||||||-|-.++++++..   +.|+|+|+-.     ++. .+  |.+   .-.+|........   ++. .
T Consensus       270 ~~~E~iLD~CAAPGGKttHI~EL~~~~---g~v~a~D~~~~rl~~~~~~~~RLGl~~i~~~~~~~~~~~~~~W~~e~~-k  345 (487)
T TIGR00563       270 KNEETILDACAAPGGKTTHIAELMPDQ---GQVVALDLHKHRLKRVKENLDRLGLTIIKVEEVDGDKAGPKEWLAEVE-K  345 (487)
T ss_pred             CCCCEEEEEECCCCCHHHHHHHHCCCC---CEEEEEECCHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCCCH-H
T ss_conf             988747731148457047677424797---208988621257889999998618837887720256776654445201-0


Q ss_pred             CCCCCCEEEECCCHHHCCC-------------CCCHHHHHHHHHHHHHHHHHHCCCCCCEEE---EEEECCCCHHHHHHH
Q ss_conf             1388748975320211022-------------210157889899988987641148774699---993059998999999
Q gi|254780313|r  132 IGGNPDLVLSDMAYPTIGH-------------RKIDHLRTMSLCEAATFFALEMLNIGGDFL---VKTFQGGTTNDILCL  195 (227)
Q Consensus       132 l~~~~DlVlSDmapn~SG~-------------~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV---~K~F~G~~~~~l~~~  195 (227)
                      ....||-||-|. | |||.             +..|.+...+|....|.-....||+||++|   |-+-.-++...+.++
T Consensus       346 saa~fDRiLlDa-P-CSg~GvirR~PD~kw~~~~~diA~L~~LQ~~iL~aiaP~vK~GGtLvYsTCt~~p~EN~~qI~aF  423 (487)
T TIGR00563       346 SAAQFDRILLDA-P-CSGTGVIRRHPDIKWLRKPADIARLAELQKEILKAIAPLVKKGGTLVYSTCTVLPEENEEQIEAF  423 (487)
T ss_pred             HHHHHCEEEECC-C-CCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHH
T ss_conf             233314215607-8-77443300178755566856517899999999998856535797588861458844328999999


Q ss_pred             HH
Q ss_conf             98
Q gi|254780313|r  196 LK  197 (227)
Q Consensus       196 l~  197 (227)
                      |.
T Consensus       424 L~  425 (487)
T TIGR00563       424 LN  425 (487)
T ss_pred             HH
T ss_conf             76


No 23 
>TIGR00478 tly hemolysin A; InterPro: IPR004538 Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture. The mechanism of action is not well defined. Hemolysin A is induced by sodium ribonucleate, and is produced by pathogenic bacterial strains. Hemolysin A from Treponema hyodysenteriae causes swine dysentry.; GO: 0003723 RNA binding, 0019836 hemolysis by symbiont of host red blood cells.
Probab=98.86  E-value=2.3e-09  Score=79.11  Aligned_cols=101  Identities=22%  Similarity=0.252  Sum_probs=69.8

Q ss_pred             CHHHHHHHHHC--CHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC------C
Q ss_conf             99999998818--447999999999864583137967888504553068999997068788327864112133------3
Q gi|254780313|r   36 DPYVQRAQLEG--WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM------E  107 (227)
Q Consensus        36 D~y~~~Ak~~g--yrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~------~  107 (227)
                      |.-...+..+-  |.||+.+||.|+++.|.+.-.+..|||+|++-||||++|.++=     .-.|+|||.-.+      .
T Consensus        44 ~~~i~l~~~~~~tfVSRGG~KL~~~L~~F~~~vk~ki~lD~GsS~GGFtd~aL~~G-----Ak~VY~vDVG~~ql~~kLR  118 (240)
T TIGR00478        44 DAKIELVQNPLRTFVSRGGEKLKEALEEFEVDVKNKIVLDVGSSTGGFTDCALQKG-----AKEVYGVDVGYNQLAEKLR  118 (240)
T ss_pred             CCCEEEECCCCCEEECCHHHHHHHHCCCCCEEECCEEEEEECCCCCHHHHHHHHCC-----CCEEEEEEECCHHHHHHCC
T ss_conf             76034414777500050458999853543313378689970567304899998705-----8467778603213343236


Q ss_pred             CCCCCEEEE-CCCCHHHHHHHHHHHCCC--CCCEEEECCC
Q ss_conf             469817830-112207999999973138--8748975320
Q gi|254780313|r  108 PILGVKFFK-FDFLDLDSWEFIRQAIGG--NPDLVLSDMA  144 (227)
Q Consensus       108 ~i~gv~~~~-gDi~~~~~~~~i~~~l~~--~~DlVlSDma  144 (227)
                      ..+.|..++ .||.---|...+   .++  -+|+=+.|.+
T Consensus       119 ~D~Rv~~~eR~N~rGy~T~~d~---~~~qP~P~lA~~DvS  155 (240)
T TIGR00478       119 QDERVKVLERTNIRGYVTPADI---VKDQPMPDLAVVDVS  155 (240)
T ss_pred             CCCEEEEEECCCCCCCCCHHHH---HCCCCCCCHHHHHHH
T ss_conf             3662689645787444665654---078889731444457


No 24 
>pfam05175 MTS Methyltransferase small domain. This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases .
Probab=98.84  E-value=5.6e-08  Score=70.47  Aligned_cols=119  Identities=20%  Similarity=0.236  Sum_probs=84.3

Q ss_pred             CCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC-----------CCCCCCEEEECCCCHHHHHHHHHHHCCC
Q ss_conf             37967888504553068999997068788327864112133-----------3469817830112207999999973138
Q gi|254780313|r   66 QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM-----------EPILGVKFFKFDFLDLDSWEFIRQAIGG  134 (227)
Q Consensus        66 k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~-----------~~i~gv~~~~gDi~~~~~~~~i~~~l~~  134 (227)
                      .++.+||||||+.|--+-.++++.+    ...|+++|+.+.           ..++++.++++|+.+.        ...+
T Consensus        30 ~~~g~vLDlGcG~G~i~~~la~~~p----~~~v~~vDi~~~Al~~a~~N~~~n~l~~v~v~~~D~~~~--------~~~~   97 (170)
T pfam05175        30 PLGGKVLDLGCGYGVLGAALAKRSP----DLEVTMVDINARALESARANLAANGLENGEVFWSDLYSA--------VEPG   97 (170)
T ss_pred             CCCCCEEEECCCCCHHHHHHHHHCC----CCEEEECHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCC--------CCCC
T ss_conf             7899499977648298999999789----867985154499999999999980998489997446665--------7788


Q ss_pred             CCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEE--EEEEECCCCHHHHHHHHHHHCCEEEEEC
Q ss_conf             874897532021102221015788989998898764114877469--9993059998999999986258469976
Q gi|254780313|r  135 NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF--LVKTFQGGTTNDILCLLKKHFQKVIHVK  207 (227)
Q Consensus       135 ~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~f--V~K~F~G~~~~~l~~~l~~~F~~V~~~K  207 (227)
                      +||+|+|.= |--+|. ..    ..++.+.-+.-|...|+|||.+  |..-+.+.     ...++..|..|..++
T Consensus        98 ~fD~IvsNP-P~h~g~-~~----~~~~~~~~i~~A~~~L~pgG~l~~V~n~~l~y-----~~~l~~~f~~v~~~~  161 (170)
T pfam05175        98 KFDLIISNP-PFHAGK-AT----DYDVAQRFIAGAARHLKPGGELWIVANRHLGY-----PSLLEELFGNVEVLA  161 (170)
T ss_pred             CEEEEEECC-CCCCCC-CC----CHHHHHHHHHHHHHHCCCCCEEEEEEECCCCC-----HHHHHHHHCCEEEEE
T ss_conf             660899897-721142-03----28999999999999616497999999899994-----799998608889997


No 25 
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.82  E-value=3.5e-08  Score=71.76  Aligned_cols=141  Identities=21%  Similarity=0.193  Sum_probs=89.3

Q ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC-C-----CCCC
Q ss_conf             999999881844799999999986458313796788850455306899999706878832786411213-3-----3469
Q gi|254780313|r   37 PYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-M-----EPIL  110 (227)
Q Consensus        37 ~y~~~Ak~~gyrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~-~-----~~i~  110 (227)
                      .|-..|.-+.   +++-.|++.-.    .++..+||||||++|-.++...+.      ...|+|+|+.+ |     ....
T Consensus        19 ~Yd~~A~~Q~---~~a~~Ll~~l~----~~~~~~vLDlGcGtG~~t~~l~~~------~~~v~~~Dls~~Ml~~a~~~~~   85 (251)
T PRK10258         19 HYEQHADLQR---QSADALLAMLP----QRKFTHVLDAGCGPGWMSRYWRER------GSQVTALDLSPPMLAQARQKDA   85 (251)
T ss_pred             HHHHHHHHHH---HHHHHHHHHCC----CCCCCCEEEEEEHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHCC
T ss_conf             5877369999---99999997366----578993999831002789999974------9969999598999999987486


Q ss_pred             CCEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHH
Q ss_conf             81783011220799999997313887489753202110222101578898999889876411487746999930599989
Q gi|254780313|r  111 GVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTN  190 (227)
Q Consensus       111 gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~  190 (227)
                      +..+++||+....       +.++.+|+|+|-++.    .|.-|..       .++.-+.++|+|||.|++-+|-...+.
T Consensus        86 ~~~~~~~D~e~Lp-------~~~~sfDli~S~~~l----qW~~d~~-------~~l~e~~rvLkPgG~l~fst~g~~tl~  147 (251)
T PRK10258         86 ADHYLAGDIESLP-------LATATFDLAWSNLAV----QWCGNLS-------TALRELYRVVRPGGVVAFTTLVQGSLP  147 (251)
T ss_pred             CHHHHHCHHHHCC-------CCCCCCCEEEECCCH----HHCCCHH-------HHHHHHHHHCCCCCEEEEECCCCCCHH
T ss_conf             3343536063099-------987882178550404----5259999-------999999964589949999815757689


Q ss_pred             HHHHHHHHH--CCEEEEECC
Q ss_conf             999999862--584699768
Q gi|254780313|r  191 DILCLLKKH--FQKVIHVKP  208 (227)
Q Consensus       191 ~l~~~l~~~--F~~V~~~KP  208 (227)
                      |+...+...  +..|..|-|
T Consensus       148 ELr~a~~~vd~~~h~~~f~~  167 (251)
T PRK10258        148 ELHQAWQAVDERPHANRFLP  167 (251)
T ss_pred             HHHHHHHHHCCCCCCCCCCC
T ss_conf             99999998316776678899


No 26 
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.78  E-value=9.1e-08  Score=69.14  Aligned_cols=112  Identities=21%  Similarity=0.262  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCC-----------CCC-CCEEEECCC
Q ss_conf             99999998645831379678885045530689999970687883278641121333-----------469-817830112
Q gi|254780313|r   52 AYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME-----------PIL-GVKFFKFDF  119 (227)
Q Consensus        52 afKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~-----------~i~-gv~~~~gDi  119 (227)
                      .=||.+|-+|.+| +||++|||+||+=|+-+.||++.-     +.+|+||+|.+-.           .++ ++++.--|.
T Consensus        58 ~~k~~~~~~kl~L-~~G~~lLDiGCGWG~l~~~aA~~y-----~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~  131 (283)
T COG2230          58 RAKLDLILEKLGL-KPGMTLLDIGCGWGGLAIYAAEEY-----GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDY  131 (283)
T ss_pred             HHHHHHHHHHCCC-CCCCEEEEECCCHHHHHHHHHHHC-----CCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEECCC
T ss_conf             9999999975699-999989874788449999999984-----9979996689999999999999759976607996562


Q ss_pred             CHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC
Q ss_conf             207999999973138874897532021102221015788989998898764114877469999305999
Q gi|254780313|r  120 LDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT  188 (227)
Q Consensus       120 ~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~  188 (227)
                      .+          +.++||-|+|=++.--=|....|.         =+..+..+|+|||.++.-..-+.+
T Consensus       132 rd----------~~e~fDrIvSvgmfEhvg~~~~~~---------ff~~~~~~L~~~G~~llh~I~~~~  181 (283)
T COG2230         132 RD----------FEEPFDRIVSVGMFEHVGKENYDD---------FFKKVYALLKPGGRMLLHSITGPD  181 (283)
T ss_pred             CC----------CCCCCCEEEEHHHHHHHCCCCHHH---------HHHHHHHHCCCCCEEEEEEECCCC
T ss_conf             10----------324342055600688737102899---------999999645999659999966788


No 27 
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.78  E-value=5.5e-08  Score=70.49  Aligned_cols=132  Identities=19%  Similarity=0.229  Sum_probs=85.3

Q ss_pred             HCCHHHHHH-HHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CCCCCCCEE
Q ss_conf             184479999-9999986458313796788850455306899999706878832786411213---------334698178
Q gi|254780313|r   45 EGWRARSAY-KLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------MEPILGVKF  114 (227)
Q Consensus        45 ~gyrsRaaf-KL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~~i~gv~~  114 (227)
                      +||.|---. -..||-+..+| +|+++|||+||+=||=+.|++++-+     +.|+|||+.+         ...-..|.|
T Consensus        30 eGf~SpGG~e~~~~~l~~l~L-~~~~kVLDvGCG~GG~a~~LA~~yg-----~~V~GiDls~~~~~~A~er~~~~~~v~f  103 (263)
T PTZ00098         30 EDYISSGGIEATKKILSDIEL-DANSKVLDIGSGLGGGCKYINEKYG-----AHTHGIDICEKIVNIAKERNQDKAKIEF  103 (263)
T ss_pred             CCCCCCCCHHHHHHHHHCCCC-CCCCEEEEECCCCCHHHHHHHHHCC-----CEEEEEECCHHHHHHHHHHCCCCCCEEE
T ss_conf             898899956899999850488-9998688868887889999999749-----8799985889999999985512585489


Q ss_pred             EECCCCHHHHHHHHHHHCCCCCCEEEEC-CCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEC-C---CCH
Q ss_conf             3011220799999997313887489753-2021102221015788989998898764114877469999305-9---998
Q gi|254780313|r  115 FKFDFLDLDSWEFIRQAIGGNPDLVLSD-MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ-G---GTT  189 (227)
Q Consensus       115 ~~gDi~~~~~~~~i~~~l~~~~DlVlSD-mapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~-G---~~~  189 (227)
                      .++|.++..       +.++.||+|.|= .-..++   ..|-..       .+.=+.++|||||.|++--|- +   ...
T Consensus       104 ~~~d~~~~~-------f~d~sFDvV~S~dailHip---~~DK~~-------l~~e~~RvLKPGG~llitDw~~~~~~~~s  166 (263)
T PTZ00098        104 EAKDILKKD-------FPENNFDLIYSRDAILHLS---LADKKK-------LFEKCYKWLKPNGILLITDYCADEIENWD  166 (263)
T ss_pred             EECCCCCCC-------CCCCCEEEEEEEHHHHCCC---HHHHHH-------HHHHHHHHCCCCCEEEEEEECCCCCCCCC
T ss_conf             967853677-------8867455898750223088---243999-------99999998468878999750135789973


Q ss_pred             HHHHHHHHHH
Q ss_conf             9999999862
Q gi|254780313|r  190 NDILCLLKKH  199 (227)
Q Consensus       190 ~~l~~~l~~~  199 (227)
                      .++...++..
T Consensus       167 ~~~~~yi~~r  176 (263)
T PTZ00098        167 DEFKAYIKKR  176 (263)
T ss_pred             HHHHHHHHHC
T ss_conf             9899999846


No 28 
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.73  E-value=4.1e-08  Score=71.29  Aligned_cols=94  Identities=22%  Similarity=0.255  Sum_probs=65.9

Q ss_pred             EEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC-----------CCCCCCEEEECCCCHHHHHHHHHHHCCCCCCE
Q ss_conf             7888504553068999997068788327864112133-----------34698178301122079999999731388748
Q gi|254780313|r   70 RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM-----------EPILGVKFFKFDFLDLDSWEFIRQAIGGNPDL  138 (227)
Q Consensus        70 ~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~-----------~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~Dl  138 (227)
                      +|||+||++|.++...++.     ....|+|+|+.+.           ...+++.++++|+.+...      ...++||+
T Consensus         1 rVLDiGcG~G~~~~~l~~~-----~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~------~~~~~fD~   69 (107)
T cd02440           1 RVLDLGCGTGALALALASG-----PGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP------EADESFDV   69 (107)
T ss_pred             CEEEEECCCCHHHHHHHHC-----CCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEECCCHHHCCH------HHCCCEEE
T ss_conf             9999988879999999956-----898899998988899999998753278864671488678863------20575319


Q ss_pred             EEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf             9753202110222101578898999889876411487746999930
Q gi|254780313|r  139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF  184 (227)
Q Consensus       139 VlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F  184 (227)
                      |+|+.....    ..+.      ...++.-+.++|+|||.|++.+.
T Consensus        70 V~~~~~~~~----~~~~------~~~~l~~~~~~LkpgG~~~is~~  105 (107)
T cd02440          70 IISDPPLHH----LVED------LARFLEEARRLLKPGGVLVLTLV  105 (107)
T ss_pred             EEEECCEEC----CCCC------HHHHHHHHHHHCCCCCEEEEEEE
T ss_conf             999175010----6518------99999999987485819999998


No 29 
>KOG1122 consensus
Probab=98.73  E-value=8.3e-08  Score=69.37  Aligned_cols=129  Identities=21%  Similarity=0.232  Sum_probs=82.7

Q ss_pred             CCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CC--CCCCCEEEECCCCHHHHHHHHHHHCCC
Q ss_conf             3796788850455306899999706878832786411213---------33--469817830112207999999973138
Q gi|254780313|r   66 QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------ME--PILGVKFFKFDFLDLDSWEFIRQAIGG  134 (227)
Q Consensus        66 k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~--~i~gv~~~~gDi~~~~~~~~i~~~l~~  134 (227)
                      +||.+|||+||||||-|-+++.++..   .|.|+|.|-..         ..  -+.|......|..+..     ...+++
T Consensus       240 q~gERIlDmcAAPGGKTt~IAalMkn---~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~-----~~~~~~  311 (460)
T KOG1122         240 QPGERILDMCAAPGGKTTHIAALMKN---TGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFP-----EKEFPG  311 (460)
T ss_pred             CCCCEECCHHCCCCCHHHHHHHHHCC---CCEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCC-----CCCCCC
T ss_conf             98871121210799507789998727---7469961354377999998899748774489736763255-----333676


Q ss_pred             CCCEEEECCCHHHCC--CCCC-----------HHHHHHHHHHHHHHHHHHCCCCCCEEEEE---EECCCCHHHHHHHHHH
Q ss_conf             874897532021102--2210-----------15788989998898764114877469999---3059998999999986
Q gi|254780313|r  135 NPDLVLSDMAYPTIG--HRKI-----------DHLRTMSLCEAATFFALEMLNIGGDFLVK---TFQGGTTNDILCLLKK  198 (227)
Q Consensus       135 ~~DlVlSDmapn~SG--~~~~-----------D~~~~~~L~~~al~~A~~~Lk~gG~fV~K---~F~G~~~~~l~~~l~~  198 (227)
                      .||-||-|+ | |||  .-+.           |-.+...|....|.-|...+++||.+|--   +---+++..+-+.|++
T Consensus       312 ~fDRVLLDA-P-CSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV~yaL~K  389 (460)
T KOG1122         312 SFDRVLLDA-P-CSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAVVDYALKK  389 (460)
T ss_pred             CCCEEEECC-C-CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHHHHHH
T ss_conf             423145348-7-77775554551013301299998727999999999873115770899985322601228999999970


Q ss_pred             HCCEEEE
Q ss_conf             2584699
Q gi|254780313|r  199 HFQKVIH  205 (227)
Q Consensus       199 ~F~~V~~  205 (227)
                      + -.|+.
T Consensus       390 ~-p~~kL  395 (460)
T KOG1122         390 R-PEVKL  395 (460)
T ss_pred             C-CCEEE
T ss_conf             9-86275


No 30 
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.72  E-value=8.1e-08  Score=69.46  Aligned_cols=110  Identities=21%  Similarity=0.295  Sum_probs=79.8

Q ss_pred             CCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CC--CCCCCEEEECCCCHHHHHHHHHHHCCC
Q ss_conf             3796788850455306899999706878832786411213---------33--469817830112207999999973138
Q gi|254780313|r   66 QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------ME--PILGVKFFKFDFLDLDSWEFIRQAIGG  134 (227)
Q Consensus        66 k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~--~i~gv~~~~gDi~~~~~~~~i~~~l~~  134 (227)
                      +||++|||+||+.|-|+--.++.++    .+.|+|+|+.+         ..  .+.++.|++||..+..       +-+.
T Consensus        50 ~~g~~vLDva~GTGd~a~~~~k~~g----~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LP-------f~D~  118 (238)
T COG2226          50 KPGDKVLDVACGTGDMALLLAKSVG----TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLP-------FPDN  118 (238)
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHCCCCCCEEEEEECHHHCC-------CCCC
T ss_conf             9998799966873199999999658----8449999799999999998743247663279970565498-------8887


Q ss_pred             CCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHH
Q ss_conf             874897532021102221015788989998898764114877469999305999899999998
Q gi|254780313|r  135 NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK  197 (227)
Q Consensus       135 ~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~  197 (227)
                      .||+|++.     .|.+.+++.      ..||.-+.++|+|||.++|==|.-.....+...+.
T Consensus       119 sFD~vt~~-----fglrnv~d~------~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~  170 (238)
T COG2226         119 SFDAVTIS-----FGLRNVTDI------DKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYI  170 (238)
T ss_pred             CCCEEEEE-----EHHHCCCCH------HHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHH
T ss_conf             65889865-----123527878------99999998762687499998768998601699999


No 31 
>pfam02353 CMAS Cyclopropane-fatty-acyl-phospholipid synthase. This family consist of Cyclopropane-fatty-acyl-phospholipid synthase or CFA synthase EC:2.1.1.79 this enzyme catalyse the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid <= S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid.
Probab=98.68  E-value=2.2e-07  Score=66.75  Aligned_cols=109  Identities=22%  Similarity=0.284  Sum_probs=73.2

Q ss_pred             HHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC---------CC--CC-CCEEEECCCC
Q ss_conf             999999864583137967888504553068999997068788327864112133---------34--69-8178301122
Q gi|254780313|r   53 YKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM---------EP--IL-GVKFFKFDFL  120 (227)
Q Consensus        53 fKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~---------~~--i~-gv~~~~gDi~  120 (227)
                      -||..|-++-+| +||++|||+||+=||++.++++..+     ++|+||.|.+-         +.  ++ .|.+...|..
T Consensus        49 ~Kl~~i~~~l~l-~~g~~vLDiGCGWG~~a~~~a~~~g-----~~v~giTlS~~Q~~~~~~r~~~~gl~~~v~v~~~Dyr  122 (273)
T pfam02353        49 AKLDLILDKLGL-KPGMTLLDIGCGWGGLMRRAAERYD-----VNVVGLTLSKNQYKLARQRVAAEGLQRKVEVLLQDYR  122 (273)
T ss_pred             HHHHHHHHHCCC-CCCCEEEEECCCCHHHHHHHHHHCC-----CEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEECCHH
T ss_conf             999999986588-9999899978880899999998479-----5189997978999999999987087432120006265


Q ss_pred             HHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECC
Q ss_conf             079999999731388748975320211022210157889899988987641148774699993059
Q gi|254780313|r  121 DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG  186 (227)
Q Consensus       121 ~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G  186 (227)
                      +.          .+++|.|+|=.+.---|.+..         ..-+.-...+|+|||.+++-.+-.
T Consensus       123 d~----------~~~fD~IvSiem~Ehvg~~~~---------~~~f~~i~~~LkpgG~~~iq~i~~  169 (273)
T pfam02353       123 DF----------DEPFDRIVSVGMFEHVGHENY---------DTFFKKLYNLLPPGGLMLLHTITG  169 (273)
T ss_pred             HC----------CCCCCEEEEEHHHHHCCHHHH---------HHHHHHHHHHCCCCCEEEEEEEEC
T ss_conf             47----------666666776516876287779---------999999998658897399999942


No 32 
>TIGR02072 BioC biotin biosynthesis protein BioC; InterPro: IPR011814    This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulphur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.; GO: 0009102 biotin biosynthetic process.
Probab=98.64  E-value=5.8e-08  Score=70.38  Aligned_cols=137  Identities=23%  Similarity=0.312  Sum_probs=98.0

Q ss_pred             CHHHHHHHHHCCHHHHHHHHHHHHHHCCCCC-CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC-C----CCC
Q ss_conf             9999999881844799999999986458313-796788850455306899999706878832786411213-3----346
Q gi|254780313|r   36 DPYVQRAQLEGWRARSAYKLLQINEKHQILQ-SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-M----EPI  109 (227)
Q Consensus        36 D~y~~~Ak~~gyrsRaafKL~eId~kf~l~k-~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~-~----~~i  109 (227)
                      +.|=+.|+-|-   ..+.+|+++-+....-. .-..|||+||+||-.|....+...    ...++++|+.+ |    +..
T Consensus         7 ~~Yd~~A~~Qr---~~~~~Ll~~L~~~~~~~~~~~~vLd~GcGTG~~t~~l~~~~~----~~~~~a~D~~~~ml~~a~~~   79 (272)
T TIGR02072         7 KTYDRHAKIQR---EMAKRLLALLKEKRPSHFEPASVLDIGCGTGYLTRALLKRFP----QAELIALDISEEMLAQAKEK   79 (272)
T ss_pred             HHHHHHHHHHH---HHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHHCC----CCEEHHHHCCHHHHHHHHHH
T ss_conf             20566679999---999999998874076544554356512685489999998688----00123333256789999974


Q ss_pred             C----------CCEEEECCCCHHHHHHHHHHHCCCC--CCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             9----------8178301122079999999731388--748975320211022210157889899988987641148774
Q gi|254780313|r  110 L----------GVKFFKFDFLDLDSWEFIRQAIGGN--PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG  177 (227)
Q Consensus       110 ~----------gv~~~~gDi~~~~~~~~i~~~l~~~--~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG  177 (227)
                      .          .+.|++||+....       .....  +|||+|=||     ..+.|..      ..+|.=+.++|+|||
T Consensus        80 ~~~GWW~~~~~~~~f~~gD~E~l~-------~~~~~~~~DLI~Sn~a-----~QW~~~~------~~~l~~l~~~lk~gG  141 (272)
T TIGR02072        80 LSEGWWQKNLKAVQFICGDIEKLP-------LEDSSFKFDLIVSNLA-----LQWCDDL------SQALSELARVLKPGG  141 (272)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHCC-------CCCCCCEEEHHHHHHH-----HHHCCCH------HHHHHHHHHHCCCCC
T ss_conf             467886576045666663777178-------8766303412756358-----8710478------899999997528796


Q ss_pred             EEEEEEECCCCHHHHHHHHH
Q ss_conf             69999305999899999998
Q gi|254780313|r  178 DFLVKTFQGGTTNDILCLLK  197 (227)
Q Consensus       178 ~fV~K~F~G~~~~~l~~~l~  197 (227)
                      .++.=+|--+.+.||....+
T Consensus       142 ~l~FStf~~~~l~El~~~~~  161 (272)
T TIGR02072       142 LLAFSTFGPGTLKELRQSFG  161 (272)
T ss_pred             EEEEEECCCHHHHHHHHHHH
T ss_conf             89986135413499999999


No 33 
>KOG2198 consensus
Probab=98.64  E-value=8.9e-08  Score=69.19  Aligned_cols=153  Identities=16%  Similarity=0.094  Sum_probs=81.8

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------C--CCCCCCEEEECCCCHHHHHH--HHHHH
Q ss_conf             13796788850455306899999706878832786411213---------3--34698178301122079999--99973
Q gi|254780313|r   65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------M--EPILGVKFFKFDFLDLDSWE--FIRQA  131 (227)
Q Consensus        65 ~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~--~~i~gv~~~~gDi~~~~~~~--~i~~~  131 (227)
                      ++|++.|||+||||||-|--..+-+-..-..|.|++-|..+         +  -|.++....+.|........  .-...
T Consensus       153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~  232 (375)
T KOG2198         153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDK  232 (375)
T ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCEEEECCCCEECCCCCCCCCCHH
T ss_conf             67998444201389844899999972377777367534578899999999852698433343121100564101467603


Q ss_pred             CCCCCCEEEECCCHHHCCCCCC----HHHH----------HHHHHHHHHHHHHHCCCCCCEEEEEEECCCC---HHHHHH
Q ss_conf             1388748975320211022210----1578----------8989998898764114877469999305999---899999
Q gi|254780313|r  132 IGGNPDLVLSDMAYPTIGHRKI----DHLR----------TMSLCEAATFFALEMLNIGGDFLVKTFQGGT---TNDILC  194 (227)
Q Consensus       132 l~~~~DlVlSDmapn~SG~~~~----D~~~----------~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~---~~~l~~  194 (227)
                      -...||-|++|. | |||....    +..+          .-.|....|.-++..|++||.+|--+=....   +--+-.
T Consensus       233 ~~~~fDrVLvDV-P-CS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNEaVV~~  310 (375)
T KOG2198         233 EQLKFDRVLVDV-P-CSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENEAVVQE  310 (375)
T ss_pred             HHHHCCEEEEEC-C-CCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf             344125368714-5-68984302280276665554113597389999999999872578779994257872002799999


Q ss_pred             HHHHHCCEEE---EE--CCCCCCCCCCEEE
Q ss_conf             9986258469---97--6866575582498
Q gi|254780313|r  195 LLKKHFQKVI---HV--KPVASRAESVEMF  219 (227)
Q Consensus       195 ~l~~~F~~V~---~~--KP~aSR~~S~E~Y  219 (227)
                      .++..+..+.   +-  -|..-|..+.-.+
T Consensus       311 ~L~~~~~~~~lv~~~~~lp~l~r~~g~t~~  340 (375)
T KOG2198         311 ALQKVGGAVELVDVSGDLPGLKRMFGSTGW  340 (375)
T ss_pred             HHHHHCCCCCCEEECCCCCCCEECCCCCCC
T ss_conf             999836854322303656552514788863


No 34 
>smart00828 PKS_MT Methyltransferase  in polyketide synthase (PKS) enzymes.
Probab=98.52  E-value=3e-07  Score=65.86  Aligned_cols=94  Identities=19%  Similarity=0.142  Sum_probs=64.6

Q ss_pred             CEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC-----------CCCC-CCEEEECCCCHHHHHHHHHHHCCCCC
Q ss_conf             67888504553068999997068788327864112133-----------3469-81783011220799999997313887
Q gi|254780313|r   69 RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM-----------EPIL-GVKFFKFDFLDLDSWEFIRQAIGGNP  136 (227)
Q Consensus        69 ~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~-----------~~i~-gv~~~~gDi~~~~~~~~i~~~l~~~~  136 (227)
                      .+|||+||+.|+++-++++..+    ...|+|+|+.+-           .-+. .+.+.++|.....        +.+.|
T Consensus         1 krVLDiGCG~G~~~~~LA~~~p----~~~v~GvDiS~~~ie~Ar~r~~~~gl~~rv~~~~~Da~~lp--------f~d~F   68 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHP----HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDP--------FPDTY   68 (224)
T ss_pred             CEEEEEECCCCHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCHHCCC--------CCCCC
T ss_conf             9089983668888999999779----98899997999999999999997299865147852110399--------99983


Q ss_pred             CEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEC
Q ss_conf             4897532021102221015788989998898764114877469999305
Q gi|254780313|r  137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ  185 (227)
Q Consensus       137 DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~  185 (227)
                      |+|+|=.+-    .+.-|.       ..++.-+.++|+|||.||+=-|-
T Consensus        69 D~V~s~evl----~Hi~D~-------~~~l~ei~RvLKPGG~lviaD~~  106 (224)
T smart00828       69 DLVFGFEVI----HHIKDK-------MDLFSNISRHLKDGGHLVLADFI  106 (224)
T ss_pred             CEEEHHHHH----HCCCCH-------HHHHHHHHHHCCCCEEEEEEEEE
T ss_conf             567685357----653999-------99999999871798499999853


No 35 
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.52  E-value=3.8e-06  Score=59.00  Aligned_cols=123  Identities=19%  Similarity=0.267  Sum_probs=76.4

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC-----------CCCCC--CCEEEECCCCHHHHHHHHHHHCC
Q ss_conf             796788850455306899999706878832786411213-----------33469--81783011220799999997313
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-----------MEPIL--GVKFFKFDFLDLDSWEFIRQAIG  133 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~-----------~~~i~--gv~~~~gDi~~~~~~~~i~~~l~  133 (227)
                      .|.+||||.|..||||-+|+.-     ....|++||+..           ...++  -+.++++|+++.  ...... -+
T Consensus       217 ~GkrvLNlFsYTGgfsv~Aa~g-----GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~--l~~~~~-~g  288 (393)
T COG1092         217 AGKRVLNLFSYTGGFSVHAALG-----GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKW--LRKAER-RG  288 (393)
T ss_pred             CCCEEEEECCCCCHHHHHHHHC-----CCCCEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHH--HHHHHH-CC
T ss_conf             6876788646676999999866-----997148982657899999999986299710105672239999--999985-59


Q ss_pred             CCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE-ECCCCHHHHHHHHHHH
Q ss_conf             88748975320211022210157889899988987641148774699993-0599989999999862
Q gi|254780313|r  134 GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT-FQGGTTNDILCLLKKH  199 (227)
Q Consensus       134 ~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~-F~G~~~~~l~~~l~~~  199 (227)
                      .++|||+-|  |.+=+....+......=....+..|..+|+|||++++=. ...-....|+..+..-
T Consensus       289 ~~fDlIilD--PPsF~r~k~~~~~~~rdy~~l~~~~~~lL~pgG~l~~~s~~~~~~~~~f~~~i~~a  353 (393)
T COG1092         289 EKFDLIILD--PPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIARA  353 (393)
T ss_pred             CCCCEEEEC--CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf             955689978--81003582100538989999999999970799689999367766989999999999


No 36 
>pfam06460 NSP13 Coronavirus NSP13. This family covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase function.
Probab=98.52  E-value=1.9e-06  Score=60.85  Aligned_cols=145  Identities=23%  Similarity=0.246  Sum_probs=89.6

Q ss_pred             CCCCC-CCEEEEEE------CCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCC
Q ss_conf             83137-96788850------455306899999706878832786411213334698178301122079999999731388
Q gi|254780313|r   63 QILQS-NRRIVDLG------SSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN  135 (227)
Q Consensus        63 ~l~k~-g~~VlDLG------aaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~i~gv~~~~gDi~~~~~~~~i~~~l~~~  135 (227)
                      .+.-| .++|++||      +|||.  -|..+-.+ .  +..++--||.+...-.+. .+.||-...        .++.+
T Consensus        57 tlaVP~nmrVlHlGAgsdkGvaPGt--~VLrqwLP-~--~ailvDnDi~dyvSDa~~-s~~gDc~t~--------~~~~k  122 (300)
T pfam06460        57 TLCVPHNMRVLHLGAGSDKGVAPGS--AVLRQWLP-K--GTILVDNDIVDYVSDADA-SVLGDCHTL--------YTEDK  122 (300)
T ss_pred             EEEECCCCEEEEECCCCCCCCCCCH--HHHHHHCC-C--CCEEECCCHHHHHCCCCC-EEECCCEEE--------CCCCE
T ss_conf             1764356379973266556868855--89997588-9--878970751553034561-787132365--------47861


Q ss_pred             CCEEEECCCHHHCCCCCCHHH-HHHH-HHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHCCEEEEECCCCCCC
Q ss_conf             748975320211022210157-8898-99988987641148774699993059998999999986258469976866575
Q gi|254780313|r  136 PDLVLSDMAYPTIGHRKIDHL-RTMS-LCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA  213 (227)
Q Consensus       136 ~DlVlSDmapn~SG~~~~D~~-~~~~-L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~~~F~~V~~~KP~aSR~  213 (227)
                      +|+|+|||=-..+  +.+|.. .+.+ ...-...+..+-|.-||++.+|+=+-+-..+|.+.+ .+|.-...|=. +--.
T Consensus       123 ~DliiSDmYd~~~--k~~~~~n~sk~gfF~yl~~~i~~kLALGGSvaiKiTE~Sw~~~LY~l~-~~F~~wt~FCT-~VNa  198 (300)
T pfam06460       123 FDLIISDMYDGRT--KSIDGENNSKEGFFTYICGFIREKLALGGSIAIKITEFSWNAQLYELM-QYFSFWTMFCT-NVNT  198 (300)
T ss_pred             EEEEEEECCCCCC--CCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHH-HHHHHEEEEEE-ECCC
T ss_conf             4089764337765--303664343201899999998765405765899987400689999998-54112057641-0267


Q ss_pred             CCCEEEEEECCC
Q ss_conf             582498983075
Q gi|254780313|r  214 ESVEMFLLAKGF  225 (227)
Q Consensus       214 ~S~E~Ylv~~gf  225 (227)
                      .|+|.|+||.+|
T Consensus       199 SSSEaFLigiNy  210 (300)
T pfam06460       199 SSSEAFLIGINY  210 (300)
T ss_pred             CCCCEEEEEEEE
T ss_conf             665325898870


No 37 
>pfam07021 MetW Methionine biosynthesis protein MetW. This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In Pseudomonas putida, as in gram-positive bacteria and certain fungi, the second and third steps are a direct sulfhydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells.
Probab=98.50  E-value=2.9e-07  Score=65.99  Aligned_cols=77  Identities=16%  Similarity=0.221  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCC----CCCCCEEEECCCCHHHHH
Q ss_conf             9999999998645831379678885045530689999970687883278641121333----469817830112207999
Q gi|254780313|r   50 RSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME----PILGVKFFKFDFLDLDSW  125 (227)
Q Consensus        50 RaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~----~i~gv~~~~gDi~~~~~~  125 (227)
                      |.-|+++.     +++.||.+||||||+.|..+.++.+.     .+..++|||+.+-.    --.|+..+++|+.+.   
T Consensus         1 R~D~~iI~-----~~I~~~srVLDlGCG~G~ll~~L~~~-----k~v~~~GvEid~~~v~~a~~kg~~Vi~~D~d~~---   67 (193)
T pfam07021         1 RADFRYIA-----RLIPPGSRVLDLGCGDGSLLYLLQEE-----KQVDGRGIELDAAGVAECVAKGLSVIQGDADKG---   67 (193)
T ss_pred             CCHHHHHH-----HHCCCCCEEEEECCCCCHHHHHHHHC-----CCCCEEEECCCHHHHHHHHHCCCCEECCCHHHC---
T ss_conf             94689999-----86589698998368898999999876-----698769833899999999864795450774459---


Q ss_pred             HHHHHHCCCCCCEEEE
Q ss_conf             9999731388748975
Q gi|254780313|r  126 EFIRQAIGGNPDLVLS  141 (227)
Q Consensus       126 ~~i~~~l~~~~DlVlS  141 (227)
                        +..+.+..||+|++
T Consensus        68 --l~~f~d~sFD~VIl   81 (193)
T pfam07021        68 --LEHFPDKSFDYVIL   81 (193)
T ss_pred             --HHHCCCCCCCEEEH
T ss_conf             --74577678037869


No 38 
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities . Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity.
Probab=98.49  E-value=9e-07  Score=62.88  Aligned_cols=137  Identities=20%  Similarity=0.273  Sum_probs=93.5

Q ss_pred             CCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCC-----CCEEEEEECCCC------------CC-
Q ss_conf             844799999999986458313796788850455306899999706878-----832786411213------------33-
Q gi|254780313|r   46 GWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA-----NNTRVVAIDILD------------ME-  107 (227)
Q Consensus        46 gyrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~-----~~~~VigVDl~~------------~~-  107 (227)
                      .||-|++=++.+-    .-.+++..|||+||+-|=|+--.++..+..+     ..+.|+|+|+.+            .+ 
T Consensus        26 ~Wr~~~~~~~~~~----~E~k~~~~~LDvA~GTGD~a~~~~k~~~~~~~a~~~~~~~vtg~D~S~~ML~~a~kk~~~~~r  101 (242)
T TIGR01934        26 LWRRRAVKLIGVQ----LEGKKGQKVLDVACGTGDLAIELAKKAGKVGKAAETERAKVTGVDFSEEMLEVAKKKAPNEER  101 (242)
T ss_pred             HHHHHHHHHHHHH----CCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHH
T ss_conf             9999999987862----368888977887238399999998635755533577633789870798899999874134200


Q ss_pred             --CCCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEC
Q ss_conf             --469817830112207999999973138874897532021102221015788989998898764114877469999305
Q gi|254780313|r  108 --PILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ  185 (227)
Q Consensus       108 --~i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~  185 (227)
                        ...++.|++||..+...       -+..||+|+.  |.   |.+++-+.      ..||.=+.++|||||.|||==|.
T Consensus       102 ~~~~~~~~f~~~dA~~LPF-------~D~sFD~~Ti--aF---GlRN~~d~------~~aL~E~~RVLKpgG~l~iLEf~  163 (242)
T TIGR01934       102 KALSANVSFIEADAEALPF-------EDNSFDAVTI--AF---GLRNVTDI------QKALREMYRVLKPGGRLVILEFS  163 (242)
T ss_pred             HHHHCCCHHEECHHHCCCC-------CCCCEEEEEE--EC---CCCCCCCH------HHHHHHHHHCCCCCCEEEEECCC
T ss_conf             3332164211000550879-------9862444664--02---55474686------78987731101889879984078


Q ss_pred             CCCHHHHHHHH-HHHCCEEE
Q ss_conf             99989999999-86258469
Q gi|254780313|r  186 GGTTNDILCLL-KKHFQKVI  204 (227)
Q Consensus       186 G~~~~~l~~~l-~~~F~~V~  204 (227)
                      -+....+++.+ +-+|..|-
T Consensus       164 ~P~~~~~~~~~Y~~Y~~~v~  183 (242)
T TIGR01934       164 KPANGAFLKKFYKFYLKNVL  183 (242)
T ss_pred             CCCCHHHHHHHHHHHHHCHH
T ss_conf             67641688999998850003


No 39 
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=98.44  E-value=3.6e-07  Score=65.36  Aligned_cols=86  Identities=28%  Similarity=0.343  Sum_probs=61.0

Q ss_pred             CHHHHHHHHHHHHHHC-------CCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCC-C---CCCEEE
Q ss_conf             4479999999998645-------8313796788850455306899999706878832786411213334-6---981783
Q gi|254780313|r   47 WRARSAYKLLQINEKH-------QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP-I---LGVKFF  115 (227)
Q Consensus        47 yrsRaafKL~eId~kf-------~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~-i---~gv~~~  115 (227)
                      -+|||+.||+|--..|       .-+.||+.-+||||+|||||=...++      ...|.+||--+|.+ +   .-|...
T Consensus       184 APSRStLKLEEA~~tfip~~E~~~rL~~~M~avDLGAcPGGWTyqLVkr------~m~V~aVDng~ma~sL~dtg~v~h~  257 (358)
T COG2933         184 APSRSTLKLEEAFHTFIPRDEWDKRLAPGMWAVDLGACPGGWTYQLVKR------NMRVYAVDNGPMAQSLMDTGQVTHL  257 (358)
T ss_pred             CCCHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEECCCCCCCCCHHHHHC------CEEEEEECCCHHHHHHHCCCCEEEE
T ss_conf             8852456589999986580166664067865642266898622542315------6089994362222656326652444


Q ss_pred             ECCCCHHHHHHHHHHHCCCCCCEEEECCCH
Q ss_conf             011220799999997313887489753202
Q gi|254780313|r  116 KFDFLDLDSWEFIRQAIGGNPDLVLSDMAY  145 (227)
Q Consensus       116 ~gDi~~~~~~~~i~~~l~~~~DlVlSDmap  145 (227)
                      ..|-+.-.      - -..++|-.+|||--
T Consensus       258 r~DGfk~~------P-~r~~idWmVCDmVE  280 (358)
T COG2933         258 REDGFKFR------P-TRSNIDWMVCDMVE  280 (358)
T ss_pred             ECCCCCCC------C-CCCCCCEEEEEHHC
T ss_conf             13473036------6-78877568752012


No 40 
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.38  E-value=3.7e-06  Score=59.07  Aligned_cols=109  Identities=25%  Similarity=0.307  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCC------CCCC--CEEEECCCCHH
Q ss_conf             999999998645831379678885045530689999970687883278641121333------4698--17830112207
Q gi|254780313|r   51 SAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME------PILG--VKFFKFDFLDL  122 (227)
Q Consensus        51 aafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~------~i~g--v~~~~gDi~~~  122 (227)
                      -.-||..|-++-+| +||+.|||+||+=||+..+|++..|     ++|.||.|..-+      .+.|  |.+...|.   
T Consensus       152 Q~~Kl~~i~~kl~l-~~G~~VLeIGcGWGgla~~aA~~~g-----~~VtgiTlS~eQ~~~a~~r~~gl~v~v~l~DY---  222 (383)
T PRK11705        152 QEAKLDLICRKLQL-KPGMRVLDIGCGWGGLARYAAEHYG-----VSVVGVTISAEQQKLAQERCAGLPVEIRLQDY---  222 (383)
T ss_pred             HHHHHHHHHHHCCC-CCCCEEEEECCCHHHHHHHHHHHCC-----CEEEEEECCHHHHHHHHHHHCCCCCEEEECCH---
T ss_conf             99999999986489-9999798857874999999999749-----75999858899999999997389878997152---


Q ss_pred             HHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf             99999997313887489753202110222101578898999889876411487746999930
Q gi|254780313|r  123 DSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF  184 (227)
Q Consensus       123 ~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F  184 (227)
                        +     .+.+++|-|+|=.+.-.-|.+..         ..-+..+.++|+|||.+++-..
T Consensus       223 --R-----d~~g~fD~IvSIeM~EhVG~~~~---------~~yF~~i~~lLkp~G~~~lqtI  268 (383)
T PRK11705        223 --R-----DLNGQFDRIVSVGMFEHVGPKNY---------RTYFEVVDRCLKPDGLFLLHTI  268 (383)
T ss_pred             --H-----HCCCCCCEEEEEEHHHHCCHHHH---------HHHHHHHHHHCCCCCEEEEEEE
T ss_conf             --4-----43677355999714865287779---------9999999985699973999993


No 41 
>PRK05134 3-demethylubiquinone-9 3-methyltransferase; Provisional
Probab=98.32  E-value=2.9e-06  Score=59.71  Aligned_cols=96  Identities=21%  Similarity=0.288  Sum_probs=62.8

Q ss_pred             CCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC----------CCCCCCEEEECCCCHHHHHHHHHHHCCCC
Q ss_conf             37967888504553068999997068788327864112133----------34698178301122079999999731388
Q gi|254780313|r   66 QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM----------EPILGVKFFKFDFLDLDSWEFIRQAIGGN  135 (227)
Q Consensus        66 k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~----------~~i~gv~~~~gDi~~~~~~~~i~~~l~~~  135 (227)
                      -.|.+|||+||+.|-.++.++++      +..|+|||+.+-          +.--.+.+.++|+.+..      ....+.
T Consensus        47 l~G~~ILDVGCGgG~lse~LAr~------Ga~VtGID~S~~~I~~Ar~ha~~~~l~i~y~~~~~e~l~------~~~~~~  114 (233)
T PRK05134         47 LFGKRVLDVGCGGGILSESMARL------GATVTGIDASEENIEVARLHALESGLKIDYRQITAEELA------AEHPGQ  114 (233)
T ss_pred             CCCCEEEEECCCCCHHHHHHHHC------CCEEEEECCCHHHHHHHHHHHHHCCCCCEEEECCHHHHH------HHCCCC
T ss_conf             68998999755897112899967------997999879989999999985644345116751476654------305786


Q ss_pred             CCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf             7489753202110222101578898999889876411487746999930
Q gi|254780313|r  136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF  184 (227)
Q Consensus       136 ~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F  184 (227)
                      ||+|+|=-        .+.|-.-   -...+.-+.++|||||.+++-+.
T Consensus       115 FDvV~~~E--------VlEHV~d---~~~~l~~~~rlLKPGG~l~lsTi  152 (233)
T PRK05134        115 FDVVTCME--------MLEHVPD---PASFIRACAKLVKPGGLVFFSTL  152 (233)
T ss_pred             EEEEEEEH--------HHHHCCC---HHHHHHHHHHHHCCCCEEEEECC
T ss_conf             34774421--------4775389---99999999997389914999726


No 42 
>TIGR03534 RF_mod_HemK protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK, a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. However, the family is diverse enough that even many members of the seed alignment do not score above the seed alignment, which was set high enough to exclude all instances of PrmB.
Probab=98.28  E-value=1.9e-05  Score=54.58  Aligned_cols=133  Identities=23%  Similarity=0.300  Sum_probs=87.4

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------C--CCCCCCEEEECCCCHHHHHHHHHHHCCCC
Q ss_conf             796788850455306899999706878832786411213---------3--34698178301122079999999731388
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------M--EPILGVKFFKFDFLDLDSWEFIRQAIGGN  135 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~--~~i~gv~~~~gDi~~~~~~~~i~~~l~~~  135 (227)
                      ...+||||||+.|--.-.+++..+    +..|+|+|+.+         +  ..+.++.|+++|+++.-        ..++
T Consensus        87 ~~~~ilDlgtGSG~I~i~la~~~~----~~~v~~~Dis~~Al~~A~~N~~~~~~~~v~~~~~d~~~~~--------~~~~  154 (251)
T TIGR03534        87 GPLKVLDLGTGSGAIALALAKERP----DARVTAVDISPEALAVARKNAKRLGLENVRFLKSDWFEPL--------PGGK  154 (251)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHCC--------CCCC
T ss_conf             898699955671699999999679----9789999898799999999999809982686513143215--------6898


Q ss_pred             CCEEEECCCHHHCC------CCC-CHHH---------HHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCH-HHHHHHHHH
Q ss_conf             74897532021102------221-0157---------889899988987641148774699993059998-999999986
Q gi|254780313|r  136 PDLVLSDMAYPTIG------HRK-IDHL---------RTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT-NDILCLLKK  198 (227)
Q Consensus       136 ~DlVlSDmapn~SG------~~~-~D~~---------~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~-~~l~~~l~~  198 (227)
                      +|+|+|-= |=+.-      ..+ .+++         --++.....+..|..+|++||.+++-+  |.+. +.+.+.++.
T Consensus       155 fDlIvsNP-PYI~~~e~~~l~~eV~~~EP~~AL~gg~dGl~~~~~ii~~a~~~L~~~G~l~~Ei--g~~q~~~v~~l~~~  231 (251)
T TIGR03534       155 FDLIVSNP-PYIPEADIHLLDPEVRFHEPKLALFAGEDGLDFYRRIIAQAPRYLKPGGWLLLEI--GYDQGEAVRALFEA  231 (251)
T ss_pred             CCEEEECC-CCCCHHHHHHCCCHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEE--CHHHHHHHHHHHHH
T ss_conf             66899789-9887456663286010267299971798469999999999998536798899996--83789999999996


Q ss_pred             H-CCEEEEECCCCCCCC
Q ss_conf             2-584699768665755
Q gi|254780313|r  199 H-FQKVIHVKPVASRAE  214 (227)
Q Consensus       199 ~-F~~V~~~KP~aSR~~  214 (227)
                      . |..+.++|--+-+.+
T Consensus       232 ~gf~~i~~~kDl~g~~R  248 (251)
T TIGR03534       232 AGFADVETRKDLAGKDR  248 (251)
T ss_pred             CCCCEEEEEECCCCCCC
T ss_conf             89970688507898976


No 43 
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.25  E-value=3.8e-05  Score=52.72  Aligned_cols=140  Identities=19%  Similarity=0.219  Sum_probs=89.5

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CC--CCCCCEEEECCCCHHHHHHHHHHHCCCC
Q ss_conf             796788850455306899999706878832786411213---------33--4698178301122079999999731388
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------ME--PILGVKFFKFDFLDLDSWEFIRQAIGGN  135 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~--~i~gv~~~~gDi~~~~~~~~i~~~l~~~  135 (227)
                      ...+|||||++.|--.-.++...    .+..|+|+|+.+         +.  .+.++.|+++|.++.-        .+.+
T Consensus       109 ~~~~ilDlgtGSGcI~isLa~~~----p~~~v~a~DiS~~Al~~A~~Na~~~~l~~v~~~~~d~~~~~--------~~~~  176 (277)
T PRK09328        109 QPCRILDLGTGTGAIALALASER----PDCEVTAVDRMPDAVALAQRNAQHLAIKNVRILQSDWFSAL--------SGQQ  176 (277)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHC----CCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCHHHC--------CCCC
T ss_conf             78818995455699999999867----79899996489999999999999809886999944752113--------7877


Q ss_pred             CCEEEECCCHHHC------CCCCCHHH---------HHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCH-HHHHHHHHH-
Q ss_conf             7489753202110------22210157---------889899988987641148774699993059998-999999986-
Q gi|254780313|r  136 PDLVLSDMAYPTI------GHRKIDHL---------RTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT-NDILCLLKK-  198 (227)
Q Consensus       136 ~DlVlSDmapn~S------G~~~~D~~---------~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~-~~l~~~l~~-  198 (227)
                      +|+|+|-= |=+.      -..++.++         --++.....+..|..+|++||.+++-+  |.+. +.+.+.++. 
T Consensus       177 fDlIVSNP-PYI~~~~~~~~~~~v~~EP~~AL~gg~dGl~~~~~ii~~a~~~L~~~G~l~~Ei--g~~Q~~~v~~l~~~~  253 (277)
T PRK09328        177 FAMIVSNP-PYIDAQDPHLQQGDVRFEPLSALVAADNGMADLAHIIEQARQYLVPGGWLLLEH--GWQQGEAVRQLFIRA  253 (277)
T ss_pred             CCEEEECC-CCCCCCHHHHCCHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEE--CHHHHHHHHHHHHHC
T ss_conf             78899789-987700034382421668389981797589999999999998446698999996--815899999999967


Q ss_pred             HCCEEEEECCCCCCCCCCEEEEEECCC
Q ss_conf             258469976866575582498983075
Q gi|254780313|r  199 HFQKVIHVKPVASRAESVEMFLLAKGF  225 (227)
Q Consensus       199 ~F~~V~~~KP~aSR~~S~E~Ylv~~gf  225 (227)
                      .|..|.++|--+-+    +.+++|+=|
T Consensus       254 gf~~i~~~kDl~g~----~R~v~ar~~  276 (277)
T PRK09328        254 GYSDVETCRDYGDN----ERVTLGRWY  276 (277)
T ss_pred             CCCEEEEECCCCCC----CEEEEEEEC
T ss_conf             99704786178999----239999967


No 44 
>pfam03291 Pox_MCEL mRNA capping enzyme. This family of enzymes are related to pfam03919.
Probab=98.16  E-value=4e-05  Score=52.60  Aligned_cols=136  Identities=17%  Similarity=0.201  Sum_probs=84.2

Q ss_pred             HHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHH-HHHHHHCCCCCCEEEEEECCCC
Q ss_conf             999996408999999988184479999999998645831379678885045530689-9999706878832786411213
Q gi|254780313|r   27 RDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ-VAARITGSNANNTRVVAIDILD  105 (227)
Q Consensus        27 ~~W~~r~~~D~y~~~Ak~~gyrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQ-va~~~~~~~~~~~~VigVDl~~  105 (227)
                      .+|+++.+-..|..+...                    -.++.+||||||+-||=+. +...      .-..++|+|+.+
T Consensus        43 NNwVKs~LI~~~~~~~~~--------------------~~~~~~VLDl~CGkGGDL~Kw~~~------~i~~~vgiDis~   96 (327)
T pfam03291        43 NNWIKSLLISLYASKTFQ--------------------DKPKRKVLDLDCGKGGDLEKYFKG------GISGLIGTDIAE   96 (327)
T ss_pred             HHHHHHHHHHHHHHHHHC--------------------CCCCCEEEEECCCCCCCHHHHHHC------CCCEEEEECCCH
T ss_conf             189999999999887514--------------------688987998368664457889747------986899966899


Q ss_pred             ------------CCC---------CCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHH
Q ss_conf             ------------334---------69817830112207999999973138874897532021102221015788989998
Q gi|254780313|r  106 ------------MEP---------ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEA  164 (227)
Q Consensus       106 ------------~~~---------i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~  164 (227)
                                  |..         .-.+.|+.+|-+.....+.+. ....+||+|-|-.|..-+       ..+.+-+..
T Consensus        97 ~sI~~A~~RY~~~~~~~~~~~~~~~f~~~f~~~D~~~~~l~~~~~-~~~~~FDvVS~QFAiHY~-------Fese~~a~~  168 (327)
T pfam03291        97 VSIEQAQERYNDLNSRSKSKYYKFDFIAEFITGDCFVSSVREVFE-PGQRKFDIVSWQFAIHYS-------FESEEKART  168 (327)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCHHHHHHHCC-CCCCCCCEEEHHHHHHHH-------HCCHHHHHH
T ss_conf             999999999998642114444566750012315621567877535-778850377517878987-------648999999


Q ss_pred             HHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHH
Q ss_conf             89876411487746999930599989999999862
Q gi|254780313|r  165 ATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH  199 (227)
Q Consensus       165 al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~~~  199 (227)
                      .|.-+...|++||.|+.-+.+|.   .+.+.++..
T Consensus       169 ~l~Nvs~~Lk~GG~FIGT~~d~~---~i~~~l~~~  200 (327)
T pfam03291       169 MLRNLAELLASGGKFIGTTPDGD---FIIKKLTAT  200 (327)
T ss_pred             HHHHHHHHCCCCCEEEEEECCHH---HHHHHHHHH
T ss_conf             99999986058988999966789---999999860


No 45 
>KOG1271 consensus
Probab=98.15  E-value=8.3e-06  Score=56.83  Aligned_cols=129  Identities=19%  Similarity=0.302  Sum_probs=84.9

Q ss_pred             HCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC--------C---CCCCC-CEEEECCCCHHHHHHHH
Q ss_conf             458313796788850455306899999706878832786411213--------3---34698-17830112207999999
Q gi|254780313|r   61 KHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD--------M---EPILG-VKFFKFDFLDLDSWEFI  128 (227)
Q Consensus        61 kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~--------~---~~i~g-v~~~~gDi~~~~~~~~i  128 (227)
                      -|++-+...+||||||+-|..+--.+    ..|..+..+|||..+        +   +..++ +.|.|.||++++     
T Consensus        61 ~~rv~~~A~~VlDLGtGNG~~L~~L~----~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~-----  131 (227)
T KOG1271          61 ISRVSKQADRVLDLGTGNGHLLFQLA----KEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPD-----  131 (227)
T ss_pred             HHHHCCCCCCEEECCCCCHHHHHHHH----HHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCC-----
T ss_conf             41102243211661579618899988----713888864531578899999878875278853168873225775-----


Q ss_pred             HHHCCCCCCEEEECCCHH---HCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHH-CCEEE
Q ss_conf             973138874897532021---10222101578898999889876411487746999930599989999999862-58469
Q gi|254780313|r  129 RQAIGGNPDLVLSDMAYP---TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH-FQKVI  204 (227)
Q Consensus       129 ~~~l~~~~DlVlSDmapn---~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~~~-F~~V~  204 (227)
                        ++.+++|+|+--+--+   .||..-.  .+   | ..-++...+.|+|||.||+--- .....+++..+... |+.+.
T Consensus       132 --~~~~qfdlvlDKGT~DAisLs~d~~~--~r---~-~~Y~d~v~~ll~~~gifvItSC-N~T~dELv~~f~~~~f~~~~  202 (227)
T KOG1271         132 --FLSGQFDLVLDKGTLDAISLSPDGPV--GR---L-VVYLDSVEKLLSPGGIFVITSC-NFTKDELVEEFENFNFEYLS  202 (227)
T ss_pred             --CCCCCEEEEEECCCEEEEECCCCCCC--CC---E-EEEHHHHHHCCCCCCEEEEEEC-CCCHHHHHHHHHCCCEEEEE
T ss_conf             --55543238960574122550777766--54---3-4435568630388967999855-76589999997259749999


Q ss_pred             EEC
Q ss_conf             976
Q gi|254780313|r  205 HVK  207 (227)
Q Consensus       205 ~~K  207 (227)
                      .++
T Consensus       203 tvp  205 (227)
T KOG1271         203 TVP  205 (227)
T ss_pred             EEC
T ss_conf             605


No 46 
>pfam08241 Methyltransf_11 Methyltransferase domain. Members of this family are SAM dependent methyltransferases.
Probab=98.13  E-value=3.8e-06  Score=59.00  Aligned_cols=87  Identities=24%  Similarity=0.316  Sum_probs=59.8

Q ss_pred             EEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC--------CCCCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf             88504553068999997068788327864112133--------3469817830112207999999973138874897532
Q gi|254780313|r   72 VDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM--------EPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDM  143 (227)
Q Consensus        72 lDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~--------~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDm  143 (227)
                      ||+||++|.++.+.++..     ...++|+|+.+-        .+..++.++.+|+.+..       +-.+.||+|+|=.
T Consensus         1 LDiGcG~G~~~~~l~~~~-----~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~d~~~~~-------~~~~~fD~I~~~~   68 (95)
T pfam08241         1 LDVGCGTGLLTEALARLP-----GAQVTGVDLSPEMLALARKRAQEDGLTFVVGDAEDLP-------FPDESFDVVVSSL   68 (95)
T ss_pred             CCCCCCCCHHHHHHHHCC-----CCEEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCC-------CCCCCCCEEEECC
T ss_conf             964624999999998457-----9999999497899877663102669479980332467-------5545685999833


Q ss_pred             CHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             02110222101578898999889876411487746999
Q gi|254780313|r  144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV  181 (227)
Q Consensus       144 apn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~  181 (227)
                      +..-.    .|       ....+.-+.++|+|||.|++
T Consensus        69 ~l~~~----~~-------~~~~l~~~~r~LkpgG~l~i   95 (95)
T pfam08241        69 VLHHL----PD-------PERALREIARVLKPGGKLVI   95 (95)
T ss_pred             CHHHC----CC-------HHHHHHHHHHHCCCCEEEEC
T ss_conf             06646----89-------99999999987786949979


No 47 
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.13  E-value=5.5e-05  Score=51.71  Aligned_cols=119  Identities=23%  Similarity=0.261  Sum_probs=74.8

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC---------C--CCC-CCEEEECCCCHHHHHHHHHHHCCC
Q ss_conf             7967888504553068999997068788327864112133---------3--469-817830112207999999973138
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM---------E--PIL-GVKFFKFDFLDLDSWEFIRQAIGG  134 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~---------~--~i~-gv~~~~gDi~~~~~~~~i~~~l~~  134 (227)
                      +..+||||||+-|--.-.++...+    +..|+|+|+.+-         +  .+. .+.++++|+++.        ..+.
T Consensus       121 ~~~~iLDlGtGSG~Iai~la~~~p----~~~v~a~DiS~~Al~~A~~N~~~~~l~~rv~~~~~D~~~~--------~~~~  188 (284)
T TIGR03533       121 PVKRILDLCTGSGCIAIACAYAFP----EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA--------LPGR  188 (284)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHHH--------CCCC
T ss_conf             777155521680799999998789----9879999899999999999998608543368883514331--------4577


Q ss_pred             CCCEEEECCCHHHCCC------CCCHHH---------HHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHH
Q ss_conf             8748975320211022------210157---------8898999889876411487746999930599989999999862
Q gi|254780313|r  135 NPDLVLSDMAYPTIGH------RKIDHL---------RTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH  199 (227)
Q Consensus       135 ~~DlVlSDmapn~SG~------~~~D~~---------~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~~~  199 (227)
                      +||+|+|.= |=++-.      .++.|+         --++.....+.-|..+|++||.+++-+  |.+-+.    +...
T Consensus       189 ~fDlIVSNP-PYI~~~e~~~l~~ev~~EP~~AL~gG~dGL~~yr~Ii~~a~~~L~pgG~l~lEi--G~~Q~~----~~~~  261 (284)
T TIGR03533       189 KYDLIVSNP-PYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEV--GNSMEA----LEEA  261 (284)
T ss_pred             CCCEEEECC-CCCCHHHHHHCCHHHCCCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEE--CCCHHH----HHHH
T ss_conf             778799779-978846554497641158699875895587999999998898425697899997--978899----9986


Q ss_pred             CCEEE
Q ss_conf             58469
Q gi|254780313|r  200 FQKVI  204 (227)
Q Consensus       200 F~~V~  204 (227)
                      |..+-
T Consensus       262 ~~~~~  266 (284)
T TIGR03533       262 YPDVP  266 (284)
T ss_pred             CCCCC
T ss_conf             68999


No 48 
>pfam01269 Fibrillarin Fibrillarin.
Probab=98.11  E-value=3.6e-05  Score=52.88  Aligned_cols=123  Identities=19%  Similarity=0.244  Sum_probs=84.7

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC--------C-CCCCCCEEEECCCCHHHHHHHHHHHCCC
Q ss_conf             313796788850455306899999706878832786411213--------3-3469817830112207999999973138
Q gi|254780313|r   64 ILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD--------M-EPILGVKFFKFDFLDLDSWEFIRQAIGG  134 (227)
Q Consensus        64 l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~--------~-~~i~gv~~~~gDi~~~~~~~~i~~~l~~  134 (227)
                      .++||.+||=||||-|--.-.+++.+|+   +|.|+|||+.|        + +.-+|+.-+-+|...+.....+   + +
T Consensus        70 ~i~~gskVLYLGAasGTTVSHvsDIvg~---~G~VyAVE~spr~~RdL~~la~~R~NIvPIl~DAr~P~~Y~~l---v-~  142 (229)
T pfam01269        70 PIKPGSKVLYLGAASGTTVSHVSDIVGP---EGVVYAVEFSPRVGRELINVAKKRPNIVPILEDARHPQKYRML---V-E  142 (229)
T ss_pred             CCCCCCEEEEECCCCCCCHHHHHHHCCC---CCEEEEEECCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHH---C-C
T ss_conf             8589987999447779857678872288---9539999717355789999974279944576677875676542---5-5


Q ss_pred             CCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEE--EEE--CC-CC----HHHHHHHHHH-HCCEEE
Q ss_conf             87489753202110222101578898999889876411487746999--930--59-99----8999999986-258469
Q gi|254780313|r  135 NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV--KTF--QG-GT----TNDILCLLKK-HFQKVI  204 (227)
Q Consensus       135 ~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~--K~F--~G-~~----~~~l~~~l~~-~F~~V~  204 (227)
                      .+|+|.+|.|.       -||++      ..+.-|..+|++||.+++  |.=  +. .+    +.+-++.|+. .|+-..
T Consensus       143 ~VD~ifqDvaQ-------~~Qa~------i~~~Na~~FLk~gG~~~l~iKA~Sid~t~~p~~vf~~e~~~L~~~~~~~~e  209 (229)
T pfam01269       143 MVDVIFADVAQ-------PDQAR------ILALNAKYFLKNGGYFMISIKARSIDVTKEPEEVFAREVEKLKEEGFKPKE  209 (229)
T ss_pred             CCCEEEECCCC-------HHHHH------HHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf             66689962787-------77899------999999986126988999997134216789899999999999876996589


Q ss_pred             EE
Q ss_conf             97
Q gi|254780313|r  205 HV  206 (227)
Q Consensus       205 ~~  206 (227)
                      .+
T Consensus       210 ~i  211 (229)
T pfam01269       210 QV  211 (229)
T ss_pred             EE
T ss_conf             98


No 49 
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.10  E-value=7.4e-05  Score=50.88  Aligned_cols=126  Identities=21%  Similarity=0.216  Sum_probs=85.1

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CCC--C-CCCEEEECCCCHHHHHHHHHHHC
Q ss_conf             13796788850455306899999706878832786411213---------334--6-98178301122079999999731
Q gi|254780313|r   65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------MEP--I-LGVKFFKFDFLDLDSWEFIRQAI  132 (227)
Q Consensus        65 ~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~~--i-~gv~~~~gDi~~~~~~~~i~~~l  132 (227)
                      +++++.|+|+||+-|+-+--++..+++   .++|++||..+         ++.  + +++.++.||.-+  ..    ..+
T Consensus        38 l~~~~~vwDIGaGsGsvsiEaa~~~~~---~~~V~aIE~~~e~~~~~~~N~~kfg~~~nv~~i~G~ap~--~l----~~l  108 (198)
T PRK00377         38 LFKGGKLVDVGCGTGSVSVEAALIVGE---GGKVYAIDKDELAVELTKKNAEKFGVGDNVVLIEGEAPE--VL----PKL  108 (198)
T ss_pred             CCCCCEEEEECCCEEHHHHHHHHHCCC---CCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCHHH--HH----HCC
T ss_conf             999899999177032999999996697---875999967888999999999980999885999525488--77----208


Q ss_pred             CCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHCCEEEEECCCCCC
Q ss_conf             38874897532021102221015788989998898764114877469999305999899999998625846997686657
Q gi|254780313|r  133 GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR  212 (227)
Q Consensus       133 ~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~~~F~~V~~~KP~aSR  212 (227)
                      ...+|.|.=+++     -...         ...++.+...|++||.+|+-.-.=+...+.+..++...-.+.++.-..||
T Consensus       109 ~p~pD~vFIGG~-----~g~l---------~~il~~~~~~L~~gGriVinaVtlet~~~~~~~l~~~~~~~ev~qv~vsr  174 (198)
T PRK00377        109 NPKSDRYFIGGG-----GEEL---------PEIIQAALEKIGKGGRIVADAILLESLNKALSALEELGYKYEVTEVIIAK  174 (198)
T ss_pred             CCCCCEEEEECC-----CCCH---------HHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHCCCCCEEEEEEEEE
T ss_conf             998898999788-----7778---------99999999857999899998362988999999999769981499999464


Q ss_pred             C
Q ss_conf             5
Q gi|254780313|r  213 A  213 (227)
Q Consensus       213 ~  213 (227)
                      .
T Consensus       175 ~  175 (198)
T PRK00377        175 G  175 (198)
T ss_pred             C
T ss_conf             7


No 50 
>KOG1975 consensus
Probab=98.08  E-value=1.4e-05  Score=55.48  Aligned_cols=149  Identities=17%  Similarity=0.222  Sum_probs=94.6

Q ss_pred             CCCHHHHHHHHHCCHHHHHHHHHHH---HH--HCCCC----CCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCC
Q ss_conf             0899999998818447999999999---86--45831----379678885045530689999970687883278641121
Q gi|254780313|r   34 INDPYVQRAQLEGWRARSAYKLLQI---NE--KHQIL----QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL  104 (227)
Q Consensus        34 ~~D~y~~~Ak~~gyrsRaafKL~eI---d~--kf~l~----k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~  104 (227)
                      ..++ |.+-...|+-.|..=+++.|   |.  |.-||    ++++.|+||||+-||=+-    +.... .-+..||+||.
T Consensus        76 Va~H-YN~~~e~g~e~Rq~S~Ii~lRnfNNwIKs~LI~~y~~~~~~~~~LgCGKGGDLl----Kw~kA-gI~~~igiDIA  149 (389)
T KOG1975          76 VAEH-YNERTEVGREKRQRSPIIFLRNFNNWIKSVLINLYTKRGDDVLDLGCGKGGDLL----KWDKA-GIGEYIGIDIA  149 (389)
T ss_pred             HHHH-HHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCHH----HHHHH-CCCCEEEEEHH
T ss_conf             9998-778888767653038543366556789999999986122300000567762076----76551-45635765343


Q ss_pred             C------------CCC-----CCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf             3------------334-----69817830112207999999973138874897532021102221015788989998898
Q gi|254780313|r  105 D------------MEP-----ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATF  167 (227)
Q Consensus       105 ~------------~~~-----i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~  167 (227)
                      +            |..     +--+.|+.||=+.....+.+ +.-+-+||+|-|--|...+       .-+.+-+..+|.
T Consensus       150 evSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~-e~~dp~fDivScQF~~HYa-------Fetee~ar~~l~  221 (389)
T KOG1975         150 EVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLL-EFKDPRFDIVSCQFAFHYA-------FETEESARIALR  221 (389)
T ss_pred             HCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHC-CCCCCCCCEEEEEEEEEEE-------ECCHHHHHHHHH
T ss_conf             40099999999999866641365169997144166898742-5789885556554567543-------133888999999


Q ss_pred             HHHHCCCCCCEEEEEEECCCCHHHHHHHHHHH
Q ss_conf             76411487746999930599989999999862
Q gi|254780313|r  168 FALEMLNIGGDFLVKTFQGGTTNDILCLLKKH  199 (227)
Q Consensus       168 ~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~~~  199 (227)
                      =+..+|+|||.|+.-+   ++...+++.|+..
T Consensus       222 Nva~~LkpGG~FIgTi---Pdsd~Ii~rlr~~  250 (389)
T KOG1975         222 NVAKCLKPGGVFIGTI---PDSDVIIKRLRAG  250 (389)
T ss_pred             HHHHHCCCCCEEEEEC---CCHHHHHHHHHHC
T ss_conf             8996358885799846---9689999999851


No 51 
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.07  E-value=3.6e-05  Score=52.88  Aligned_cols=107  Identities=21%  Similarity=0.169  Sum_probs=66.4

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------C--CCC-CCCEEEECCCCHHHHHHHHHHHCCC
Q ss_conf             796788850455306899999706878832786411213---------3--346-9817830112207999999973138
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------M--EPI-LGVKFFKFDFLDLDSWEFIRQAIGG  134 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~--~~i-~gv~~~~gDi~~~~~~~~i~~~l~~  134 (227)
                      .|.+|||+||+.|..+..++++      +..|+||||.+         .  .-+ .++.|..||+ +.         +.|
T Consensus        63 ~G~rVLDaGCGtG~la~~LA~~------Ga~V~avDiS~~mi~~A~~Ra~~~g~~~~v~F~~gDl-e~---------~~G  126 (230)
T PRK07580         63 TGLSILDAGCGTGSLSIPLARR------GAKVVASDISPQMVEEARERAPEAGLDGNITFEVGDL-ES---------LLG  126 (230)
T ss_pred             CCCEEEECCCCCCHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEECCC-CC---------CCC
T ss_conf             8998988187867879999977------9989998389999999997558627876753896676-54---------579


Q ss_pred             CCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHC
Q ss_conf             874897532021102221015788989998898764114877469999305999899999998625
Q gi|254780313|r  135 NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF  200 (227)
Q Consensus       135 ~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~~~F  200 (227)
                      .||.|+|=-        ..-|+-.-++..+.-.+|.   +.+|.+|.-+=--...-.++..+-+.|
T Consensus       127 ~FD~Vv~md--------vLiHYp~~d~~~~l~~la~---~~~~~~ifTfAP~T~lL~~m~~iGklF  181 (230)
T PRK07580        127 SFDTVVCLD--------VLIHYPQEDAERMLAHLAS---LTRGSLIFTFAPYTPLLALLHWIGGFF  181 (230)
T ss_pred             CCCCHHHCC--------CEEECCHHHHHHHHHHHHH---CCCCEEEEEECCCCHHHHHHHHHHHHC
T ss_conf             866023337--------1554578899999999972---558859999689869999999986438


No 52 
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.05  E-value=0.00011  Score=49.81  Aligned_cols=127  Identities=17%  Similarity=0.188  Sum_probs=81.2

Q ss_pred             CCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC---------C--CCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf             83137967888504553068999997068788327864112133---------3--469817830112207999999973
Q gi|254780313|r   63 QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM---------E--PILGVKFFKFDFLDLDSWEFIRQA  131 (227)
Q Consensus        63 ~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~---------~--~i~gv~~~~gDi~~~~~~~~i~~~  131 (227)
                      ++ +|+++|.|+||+.|+.+--++....    +++|+|||..+-         +  -+.|++.+.|+.  ++...    .
T Consensus        37 ~l-~~~~~vwDIGaGtGsVsiEaa~~~~----~g~V~AIE~~~~a~~li~~N~~rfgv~nv~ii~g~a--pe~L~----~  105 (196)
T PRK07402         37 RL-EPDSVLWDIGAGTGTIPVEAALLCP----KGRVIAIERDEEVANLIRRNCDRFGVKNVEVIEGSA--PECLA----Q  105 (196)
T ss_pred             CC-CCCCEEEEECCCCCHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCC--HHHHH----H
T ss_conf             89-9999999947887799999998789----988999976888999999989972999879997263--66684----0


Q ss_pred             CCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHH-HCCEEEEECCCC
Q ss_conf             1388748975320211022210157889899988987641148774699993059998999999986-258469976866
Q gi|254780313|r  132 IGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKK-HFQKVIHVKPVA  210 (227)
Q Consensus       132 l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~~-~F~~V~~~KP~a  210 (227)
                      +...+|.|.=-+    +|  ..         ...++.+...|+|||.+|+-.-.=+........++. .|..+.+.--..
T Consensus       106 l~p~pD~vFIGG----g~--~l---------~~il~~~~~~L~pgGriVinaitLetl~~~~~~l~~~~~~~~e~~qv~v  170 (196)
T PRK07402        106 LAPAPDRICIEG----GR--PI---------KEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQARNVEVVQAAV  170 (196)
T ss_pred             CCCCCCEEEECC----CC--CH---------HHHHHHHHHHCCCCCEEEEEEEEHHHHHHHHHHHHHCCCCCEEEEEEEH
T ss_conf             899999999848----96--88---------9999999986799989999857098899999999973887637999975


Q ss_pred             CCCCC
Q ss_conf             57558
Q gi|254780313|r  211 SRAES  215 (227)
Q Consensus       211 SR~~S  215 (227)
                      ||..+
T Consensus       171 sr~~~  175 (196)
T PRK07402        171 NRLET  175 (196)
T ss_pred             HHCCC
T ss_conf             20323


No 53 
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.04  E-value=3.6e-05  Score=52.85  Aligned_cols=120  Identities=19%  Similarity=0.200  Sum_probs=72.5

Q ss_pred             CCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC-----------CCCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf             83137967888504553068999997068788327864112133-----------3469817830112207999999973
Q gi|254780313|r   63 QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM-----------EPILGVKFFKFDFLDLDSWEFIRQA  131 (227)
Q Consensus        63 ~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~-----------~~i~gv~~~~gDi~~~~~~~~i~~~  131 (227)
                      ..+.|| ++|||||+.|.=+-+.+.+      +..|.|||+.+.           +.++++.+-..|+.+.        .
T Consensus        27 ~~~~~g-~~LDlgcG~Grna~~La~~------G~~VtavD~s~~al~~~~~~a~~~~l~~v~~~~~Dl~~~--------~   91 (198)
T PRK11207         27 KVVKPG-RTLDLGCGNGRNSLYLAAN------GYDVTAWDKNPMSIANLERIKAAENLDNLHTRVVDLNNL--------T   91 (198)
T ss_pred             CCCCCC-CEEEECCCCCHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCCCC--------C
T ss_conf             358997-4777247887869999868------985999979999999999999875998246562031238--------8


Q ss_pred             CCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCE-EEEEEECCCCH------H-HH-HHHHHHHCCE
Q ss_conf             13887489753202110222101578898999889876411487746-99993059998------9-99-9999862584
Q gi|254780313|r  132 IGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD-FLVKTFQGGTT------N-DI-LCLLKKHFQK  202 (227)
Q Consensus       132 l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~-fV~K~F~G~~~------~-~l-~~~l~~~F~~  202 (227)
                      +++.+|+|+|-+....     ++.    +....++.-....++|||. +++=.++..+.      . .| ...|+.+|.-
T Consensus        92 ~~~~yDlIlstvv~~f-----l~p----~~~p~iia~mq~~t~PGG~~LIV~~~dt~d~p~~~~fpf~f~~gEL~~yy~~  162 (198)
T PRK11207         92 FDGEYDFILSTVVLMF-----LEA----KTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEG  162 (198)
T ss_pred             CCCCCCEEEEEEEEEE-----CCH----HHHHHHHHHHHHHCCCCCEEEEEEECCHHHCCCCCCCCCCCCHHHHHHHHCC
T ss_conf             7777058978645210-----486----6789999999996089948999997454237899897776685799987279


Q ss_pred             EEEE
Q ss_conf             6997
Q gi|254780313|r  203 VIHV  206 (227)
Q Consensus       203 V~~~  206 (227)
                      =.++
T Consensus       163 W~il  166 (198)
T PRK11207        163 WEMV  166 (198)
T ss_pred             CEEE
T ss_conf             9799


No 54 
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.02  E-value=1.3e-05  Score=55.56  Aligned_cols=119  Identities=25%  Similarity=0.305  Sum_probs=84.8

Q ss_pred             HHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC------CCCCCCCEEEE
Q ss_conf             881844799999999986458313796788850455306899999706878832786411213------33469817830
Q gi|254780313|r   43 QLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD------MEPILGVKFFK  116 (227)
Q Consensus        43 k~~gyrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~------~~~i~gv~~~~  116 (227)
                      |=++-|+|-|.-|+-   .-. +.+-..|+||||+||.=|++.+++.+    ...|.|+|-.+      .+-++++.|.+
T Consensus        10 ~F~~eRtRPa~dLla---~Vp-~~~~~~v~DLGCGpGnsTelL~~RwP----~A~i~GiDsS~~Mla~Aa~rlp~~~f~~   81 (257)
T COG4106          10 QFEDERTRPARDLLA---RVP-LERPRRVVDLGCGPGNSTELLARRWP----DAVITGIDSSPAMLAKAAQRLPDATFEE   81 (257)
T ss_pred             HHHHHCCCCHHHHHH---HCC-CCCCCEEEECCCCCCHHHHHHHHHCC----CCEEEECCCCHHHHHHHHHHCCCCCEEC
T ss_conf             877751573889986---478-66641034557788778899998688----8867604699999999997489973210


Q ss_pred             CCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC
Q ss_conf             112207999999973138874897532021102221015788989998898764114877469999305999
Q gi|254780313|r  117 FDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT  188 (227)
Q Consensus       117 gDi~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~  188 (227)
                      +|+.+-.        .....||+.|..+    =.|--||.....       --...|.|||.+-+-+=+.-+
T Consensus        82 aDl~~w~--------p~~~~dllfaNAv----lqWlpdH~~ll~-------rL~~~L~Pgg~LAVQmPdN~d  134 (257)
T COG4106          82 ADLRTWK--------PEQPTDLLFANAV----LQWLPDHPELLP-------RLVSQLAPGGVLAVQMPDNLD  134 (257)
T ss_pred             CCHHHCC--------CCCCCCHHHHHHH----HHHCCCCHHHHH-------HHHHHHCCCCEEEEECCCCCC
T ss_conf             5275449--------9876330334436----644364089999-------999850888569997887647


No 55 
>pfam01135 PCMT Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT).
Probab=98.01  E-value=2.3e-05  Score=54.08  Aligned_cols=92  Identities=23%  Similarity=0.233  Sum_probs=68.6

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC-----------CCCCCCCEEEECCCCHHHHHHHHHHHCC
Q ss_conf             13796788850455306899999706878832786411213-----------3346981783011220799999997313
Q gi|254780313|r   65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-----------MEPILGVKFFKFDFLDLDSWEFIRQAIG  133 (227)
Q Consensus        65 ~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~-----------~~~i~gv~~~~gDi~~~~~~~~i~~~l~  133 (227)
                      ++|+++|||+||+-|-.+-++++.+++   .|+|++||..+           -..+.||.++.||...--.       -.
T Consensus        71 l~~g~~VLeIGtGsGY~tAlLa~l~~~---~g~V~~iE~~~~l~~~A~~~l~~~~~~nV~~~~gdg~~g~~-------~~  140 (205)
T pfam01135        71 LKPGMRVLEIGSGSGYLTACFARMVGE---VGRVVSIEHIPELVEIARRNLEKLGLENVIVVVGDGRQGWP-------EF  140 (205)
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHHCC---CCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC-------CC
T ss_conf             899998999669965999999998387---87699983589999999999998488865898456455883-------33


Q ss_pred             CCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf             88748975320211022210157889899988987641148774699993
Q gi|254780313|r  134 GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT  183 (227)
Q Consensus       134 ~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~  183 (227)
                      ++||.|+..+|...     +-            .--...|++||.+|+=+
T Consensus       141 apfD~Iiv~aa~~~-----iP------------~~l~~qL~~gGrLv~pv  173 (205)
T pfam01135       141 APYDAIHVGAAAPE-----IP------------EALIDQLKEGGRLVIPV  173 (205)
T ss_pred             CCCCEEEEEEECCC-----CC------------HHHHHHCCCCCEEEEEE
T ss_conf             98058999750676-----88------------99999628797899998


No 56 
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.01  E-value=0.00015  Score=48.99  Aligned_cols=134  Identities=20%  Similarity=0.174  Sum_probs=80.5

Q ss_pred             CCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC---------C--CC-CCCEEEECCCCHHHHHHHHHHHCCCC
Q ss_conf             967888504553068999997068788327864112133---------3--46-98178301122079999999731388
Q gi|254780313|r   68 NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM---------E--PI-LGVKFFKFDFLDLDSWEFIRQAIGGN  135 (227)
Q Consensus        68 g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~---------~--~i-~gv~~~~gDi~~~~~~~~i~~~l~~~  135 (227)
                      ..+||||||+.|--.-.++...+    +..|+++|+.+-         +  .+ ..+.++++|+++.-        .+++
T Consensus       134 ~~rilDlGtGSG~Iaisla~~~p----~~~v~a~Dis~~AL~vA~~N~~~~~l~~rv~~~~~D~~~~l--------~~~~  201 (307)
T PRK11805        134 PTRILDLCTGSGCIAIACAYAFP----DAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAAL--------PGRR  201 (307)
T ss_pred             CCEEEEECCCHHHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHHCC--------CCCC
T ss_conf             87277742782799999998789----98899985899999999999998388773899804022126--------8875


Q ss_pred             CCEEEECCCHHHCC-----C-CCCHHH---------HHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHC
Q ss_conf             74897532021102-----2-210157---------88989998898764114877469999305999899999998625
Q gi|254780313|r  136 PDLVLSDMAYPTIG-----H-RKIDHL---------RTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF  200 (227)
Q Consensus       136 ~DlVlSDmapn~SG-----~-~~~D~~---------~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~~~F  200 (227)
                      ||+|+|-= |=+.-     . .++.|+         --+++....+.-|..+|+|||.+++-+=  .+    ...+.+.|
T Consensus       202 fDlIvSNP-PYI~~~~~~~L~~ev~~EP~~AL~gG~DGLd~~r~i~~~A~~~L~pgG~L~~EiG--~~----q~~l~~~~  274 (307)
T PRK11805        202 YDLIVSNP-PYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAADYLTEDGVLVCEVG--NS----MVHLEAAY  274 (307)
T ss_pred             CCEEEECC-CCCCHHHHHHCCHHHCCCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEC--CC----HHHHHHHC
T ss_conf             07799679-9788565633977531587888768924889999999988974476968999979--78----89999867


Q ss_pred             CEEEEECCCCCCCCCCEEEEE
Q ss_conf             846997686657558249898
Q gi|254780313|r  201 QKVIHVKPVASRAESVEMFLL  221 (227)
Q Consensus       201 ~~V~~~KP~aSR~~S~E~Ylv  221 (227)
                      ..+-.+=+.-+. .+..+++|
T Consensus       275 p~~p~~wle~~~-g~~gv~~i  294 (307)
T PRK11805        275 PDVPFTWLEFEN-GGDGVFLL  294 (307)
T ss_pred             CCCCCEEEEECC-CCCEEEEE
T ss_conf             999954662068-97379997


No 57 
>PRK11036 putative metallothionein SmtA; Provisional
Probab=98.01  E-value=4.2e-05  Score=52.46  Aligned_cols=112  Identities=17%  Similarity=0.211  Sum_probs=71.4

Q ss_pred             CCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CCC---CCCCEEEECCCCHHHHHHHHHHHCCCC
Q ss_conf             96788850455306899999706878832786411213---------334---698178301122079999999731388
Q gi|254780313|r   68 NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------MEP---ILGVKFFKFDFLDLDSWEFIRQAIGGN  135 (227)
Q Consensus        68 g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~~---i~gv~~~~gDi~~~~~~~~i~~~l~~~  135 (227)
                      --+|||.||+.|.+++..++.      +..|+++|+.+         ++.   -..++++++++.+.      .+.+.+.
T Consensus        45 plrVLDvG~G~G~~a~~lA~~------Gh~Vt~~D~S~~mL~~A~~~a~~~gv~~~~~~v~~~~q~l------~~~~~~~  112 (256)
T PRK11036         45 PLRVLDAGGGEGQTAIKMAEL------GHQVTLCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDI------AQHLETP  112 (256)
T ss_pred             CCEEEEECCCCCHHHHHHHHC------CCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHH------HHHCCCC
T ss_conf             983998379877989999977------9979986699999999999988649661279885689988------5423688


Q ss_pred             CCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHCCEE
Q ss_conf             74897532021102221015788989998898764114877469999305999899999998625846
Q gi|254780313|r  136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV  203 (227)
Q Consensus       136 ~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~~~F~~V  203 (227)
                      ||+|+|-.-     ..++++.      ..++.....+|+|||.+=+=++ ...-.-+...+.-+|..+
T Consensus       113 fDlVlcHaV-----LE~v~dP------~~~l~~l~~~lkPGG~lSLmfy-N~~alv~~n~l~Gnf~~a  168 (256)
T PRK11036        113 VDLILFHAV-----LEWVADP------KSVLQTLWSVLRPGGALSLMFY-NANGLLMHNMVAGNFDYV  168 (256)
T ss_pred             CCEEEEEHH-----HHHCCCH------HHHHHHHHHHHCCCCEEEEEEC-CHHHHHHHHHHHCCHHHH
T ss_conf             667865136-----7723789------9999999997589937999842-851699999982589999


No 58 
>PTZ00146 fibrillarin; Provisional
Probab=97.99  E-value=7.6e-05  Score=50.82  Aligned_cols=99  Identities=18%  Similarity=0.314  Sum_probs=74.5

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC--------C-CCCCCCEEEECCCCHHHHHHHHHHHCCCC
Q ss_conf             13796788850455306899999706878832786411213--------3-34698178301122079999999731388
Q gi|254780313|r   65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD--------M-EPILGVKFFKFDFLDLDSWEFIRQAIGGN  135 (227)
Q Consensus        65 ~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~--------~-~~i~gv~~~~gDi~~~~~~~~i~~~l~~~  135 (227)
                      |+|+..||=||||-|--.-.+++.++++   +.|+||+..|        + +.-+|+.-|-.|...+.....+   + ..
T Consensus       133 Ik~GskVLYLGAasGTTVSHVSDIVG~~---G~VYAVEfSpr~~RdLl~lA~~R~NIvPIleDAr~P~kYr~l---V-~~  205 (296)
T PTZ00146        133 IKPGSKVLYLGAASGTTVSHVSDLVGPE---GVVYAVEFSHRSGRDLVEMAKRRTNIVPIIEDARYPQKYRML---V-PM  205 (296)
T ss_pred             CCCCCEEEEECCCCCCCHHHHHHHCCCC---CEEEEEEECCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHH---C-CC
T ss_conf             3799989985146798655666501788---619999706466889999972279833577778974675542---4-55


Q ss_pred             CCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf             748975320211022210157889899988987641148774699993
Q gi|254780313|r  136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT  183 (227)
Q Consensus       136 ~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~  183 (227)
                      +|+|.+|.|.       -||++++      +.-|..+|++||.|++-+
T Consensus       206 VDvIf~DVAQ-------pdQarI~------~~Na~~FLK~gG~~~i~I  240 (296)
T PTZ00146        206 VDCIFADVAQ-------PDQARIV------ALNAQHFLKNGGHFVISI  240 (296)
T ss_pred             CCEEEECCCC-------HHHHHHH------HHHHHHHHHCCCEEEEEE
T ss_conf             5589961787-------6589999------999998531698899999


No 59 
>PRK04266 fibrillarin; Provisional
Probab=97.99  E-value=6.3e-05  Score=51.32  Aligned_cols=121  Identities=17%  Similarity=0.215  Sum_probs=83.7

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC--------C-CCCCCCEEEECCCCHHHHHHHHHHHCCCC
Q ss_conf             13796788850455306899999706878832786411213--------3-34698178301122079999999731388
Q gi|254780313|r   65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD--------M-EPILGVKFFKFDFLDLDSWEFIRQAIGGN  135 (227)
Q Consensus        65 ~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~--------~-~~i~gv~~~~gDi~~~~~~~~i~~~l~~~  135 (227)
                      ++||..||=||||-|--.-.+++.++    .|.|+|||+.|        + +.-+|+.=+-+|...+.....+   + ..
T Consensus        70 i~~gskVLYLGAasGTTVSHvsDiV~----~G~VyAVE~spr~~RdL~~la~~R~NivPIl~DAr~P~~Y~~~---v-~~  141 (226)
T PRK04266         70 IKKGSKVLYLGAASGTTVSHVSDIVE----EGRVYAVEFAPRVMRELLLVAEERKNIIPILGDARKPEEYAHL---V-EK  141 (226)
T ss_pred             CCCCCEEEEECCCCCCCHHHHHHHCC----CCEEEEEEECCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHH---C-CC
T ss_conf             58998799954777984888987517----9649999827077899999985089962575467884564420---5-65


Q ss_pred             CCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEE--EEEC--C-CC----HHHHHHHHH-HHCCEEEE
Q ss_conf             7489753202110222101578898999889876411487746999--9305--9-99----899999998-62584699
Q gi|254780313|r  136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV--KTFQ--G-GT----TNDILCLLK-KHFQKVIH  205 (227)
Q Consensus       136 ~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~--K~F~--G-~~----~~~l~~~l~-~~F~~V~~  205 (227)
                      +|+|.+|.|       .-||+.      .++.-|..+|++||.+++  |.=.  . .+    +.+-++.|+ ..|+-...
T Consensus       142 VD~i~qDvA-------Q~dQa~------I~~~Na~~FLk~gG~~~l~iKA~Sid~t~~p~~vf~~~~~~L~~~~~~~~e~  208 (226)
T PRK04266        142 VDVIYQDVA-------QPNQAE------IAADNADIFLKPGGYLMLAIKARSIDVTKDPKEIFKEEIKKLEEGGFEILEV  208 (226)
T ss_pred             CCEEEEECC-------CHHHHH------HHHHHHHHHHHCCCEEEEEEEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf             658996067-------742899------9999999860159889999974235646898999999999998769966899


Q ss_pred             E
Q ss_conf             7
Q gi|254780313|r  206 V  206 (227)
Q Consensus       206 ~  206 (227)
                      +
T Consensus       209 i  209 (226)
T PRK04266        209 V  209 (226)
T ss_pred             E
T ss_conf             8


No 60 
>pfam10672 Methyltrans_SAM S-adenosylmethionine-dependent methyltransferase. Members of this family are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases.
Probab=97.97  E-value=0.00018  Score=48.43  Aligned_cols=125  Identities=18%  Similarity=0.243  Sum_probs=75.6

Q ss_pred             CCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC-----------CC--CCCCCEEEECCCCHHHHHHHHHHHC
Q ss_conf             3796788850455306899999706878832786411213-----------33--4698178301122079999999731
Q gi|254780313|r   66 QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-----------ME--PILGVKFFKFDFLDLDSWEFIRQAI  132 (227)
Q Consensus        66 k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~-----------~~--~i~gv~~~~gDi~~~~~~~~i~~~l  132 (227)
                      -+|.+||||-|..|||+-+|+. -|    .-.|++||+..           ..  ....+.|+.+|+++.  ...+..  
T Consensus       122 ~~g~rvLn~Fsytg~fsv~A~~-~G----A~~v~~vD~S~~al~~a~~N~~lN~~~~~~~~~~~~D~f~~--l~~~~~--  192 (286)
T pfam10672       122 AKGKNVLNLFAYTCGFSVAAIA-GG----ASQVVNVDMARGSLSKGRDNHRLNGHDLGRVSFLGHDIFKS--WGKIKK--  192 (286)
T ss_pred             CCCCCEEEECCCCCHHHHHHHH-CC----CCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHH--HHHHHC--
T ss_conf             2898325311478699999876-79----87799991988999999999997699954369998309999--999861--


Q ss_pred             CCCCCEEEECCCHHHC-CCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCC-CHHHHHHHHHHHCCEEEE
Q ss_conf             3887489753202110-222101578898999889876411487746999930599-989999999862584699
Q gi|254780313|r  133 GGNPDLVLSDMAYPTI-GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGG-TTNDILCLLKKHFQKVIH  205 (227)
Q Consensus       133 ~~~~DlVlSDmapn~S-G~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~-~~~~l~~~l~~~F~~V~~  205 (227)
                      .++||+|+.| -|... +.+..  .+-   -......|..+|+|||.+++=.-... ..+.|...+...=..+.+
T Consensus       193 ~~~fD~VilD-PPsf~k~~~~~--~~~---Y~~l~~~a~~ll~~gG~L~~~s~s~~l~~~~~~~~~~~~~~~~~~  261 (286)
T pfam10672       193 LGPYDLVIID-PPSFQKGSFAL--TKD---YKKILRRLPELLVEGGTVLACVNSPAVGPDFLIEEMAEEAPSLHF  261 (286)
T ss_pred             CCCCCEEEEC-CCCCCCCHHHH--HHH---HHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEE
T ss_conf             7999879987-99988872478--878---999999999860899689998188658999999999985876299


No 61 
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=97.94  E-value=4.6e-05  Score=52.18  Aligned_cols=140  Identities=22%  Similarity=0.371  Sum_probs=86.3

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC-----------CCC-CCCEEEECCCCHHHHHHHHHHHC
Q ss_conf             137967888504553068999997068788327864112133-----------346-98178301122079999999731
Q gi|254780313|r   65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM-----------EPI-LGVKFFKFDFLDLDSWEFIRQAI  132 (227)
Q Consensus        65 ~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~-----------~~i-~gv~~~~gDi~~~~~~~~i~~~l  132 (227)
                      .....+||||||+-|.-.-.++++...    ..|+||++++.           .++ +.+.++++||.+...     ...
T Consensus        42 ~~~~~~IlDlGaG~G~l~L~la~r~~~----a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~-----~~~  112 (248)
T COG4123          42 VPKKGRILDLGAGNGALGLLLAQRTEK----AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLK-----ALV  112 (248)
T ss_pred             CCCCCEEEEECCCCCHHHHHHHCCCCC----CCEEEEEECHHHHHHHHHHHHHCCCHHHEEEEHHHHHHHHH-----CCC
T ss_conf             566876988368946899997455877----80799981799999999988618613401676430887654-----236


Q ss_pred             CCCCCEEEECCCHHHCCCC-CCHH----HHH-HHH-HHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHH-HC--CE
Q ss_conf             3887489753202110222-1015----788-989-9988987641148774699993059998999999986-25--84
Q gi|254780313|r  133 GGNPDLVLSDMAYPTIGHR-KIDH----LRT-MSL-CEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKK-HF--QK  202 (227)
Q Consensus       133 ~~~~DlVlSDmapn~SG~~-~~D~----~~~-~~L-~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~~-~F--~~  202 (227)
                      ...||+|+|-=-.+..|.. ..|.    ++. +++ .+..+..|..+|++||.+.+=. .-+...+++..+++ .|  .+
T Consensus       113 ~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~-r~erl~ei~~~l~~~~~~~k~  191 (248)
T COG4123         113 FASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVH-RPERLAEIIELLKSYNLEPKR  191 (248)
T ss_pred             CCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEE-CHHHHHHHHHHHHHCCCCCEE
T ss_conf             5654789959898787533486746655663222889999999999746797899995-588889999999866987158


Q ss_pred             EEEECCCCCCCC
Q ss_conf             699768665755
Q gi|254780313|r  203 VIHVKPVASRAE  214 (227)
Q Consensus       203 V~~~KP~aSR~~  214 (227)
                      +..+-|...++.
T Consensus       192 i~~V~p~~~k~A  203 (248)
T COG4123         192 IQFVYPKIGKAA  203 (248)
T ss_pred             EEEECCCCCCCC
T ss_conf             998627888751


No 62 
>pfam08704 GCD14 tRNA methyltransferase complex GCD14 subunit. GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA.
Probab=97.90  E-value=0.00015  Score=48.95  Aligned_cols=129  Identities=15%  Similarity=0.190  Sum_probs=87.6

Q ss_pred             CHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------C---CCCCCCEE
Q ss_conf             44799999999986458313796788850455306899999706878832786411213---------3---34698178
Q gi|254780313|r   47 WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------M---EPILGVKF  114 (227)
Q Consensus        47 yrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~---~~i~gv~~  114 (227)
                      |..=++|=+..+    +| +||.+||+-|.+-|+.|-+.++.+++.   |+|+.+|..+         +   ....++.+
T Consensus        87 YpkD~s~I~~~l----di-~PG~~VlEaGtGSGsLT~~Laravgp~---G~v~t~E~~e~r~~~A~~n~~~~g~~~~v~~  158 (309)
T pfam08704        87 YTPDISLIIMML----EL-KPGSVVCESGTGSGSLSHAIARTVAPT---GHLYTFEFHEQRADKAREEFREHGLDSLVTV  158 (309)
T ss_pred             CCCCHHHHHHHH----CC-CCCCEEEEECCCCCHHHHHHHHHHCCC---CEEEEEECCHHHHHHHHHHHHHCCCCCCEEE
T ss_conf             560099999980----98-999999983678429999999974888---6599984478999999999987498750588


Q ss_pred             EECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC-CCCEEEEEEECCCCHHH--
Q ss_conf             301122079999999731388748975320211022210157889899988987641148-77469999305999899--
Q gi|254780313|r  115 FKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLN-IGGDFLVKTFQGGTTND--  191 (227)
Q Consensus       115 ~~gDi~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk-~gG~fV~K~F~G~~~~~--  191 (227)
                      ...|+......    +.+.+.+|.|+-|| |+-               -.|+..+...|+ +||.+++  | .+..++  
T Consensus       159 ~~rDv~~~gf~----~~~~~~~D~VfLDl-p~P---------------W~ai~~~~~~Lk~~Gg~l~~--f-~P~ieQv~  215 (309)
T pfam08704       159 THRDVCKSGFD----TEVSNKADAVFLDL-PAP---------------WEAIPHAAKALKVEGGRLCS--F-SPCIEQVQ  215 (309)
T ss_pred             EECCHHCCCCC----CCCCCCCCEEEECC-CCH---------------HHHHHHHHHHHCCCCCEEEE--E-CCCHHHHH
T ss_conf             98520013666----44566435899758-997---------------99889999860689968999--9-19899999


Q ss_pred             -HHHHHHH-HCCEEEEE
Q ss_conf             -9999986-25846997
Q gi|254780313|r  192 -ILCLLKK-HFQKVIHV  206 (227)
Q Consensus       192 -l~~~l~~-~F~~V~~~  206 (227)
                       ....|+. -|..+..+
T Consensus       216 r~~~aL~~~gF~~i~t~  232 (309)
T pfam08704       216 RTCLALAALGFTEIETI  232 (309)
T ss_pred             HHHHHHHHCCCCCEEEE
T ss_conf             99999997799740799


No 63 
>KOG1596 consensus
Probab=97.88  E-value=2.5e-05  Score=53.85  Aligned_cols=100  Identities=22%  Similarity=0.361  Sum_probs=74.2

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEE--------CCCCCC-CCCCCEEEECCCCHHHHHHHHHHHCCCC
Q ss_conf             1379678885045530689999970687883278641--------121333-4698178301122079999999731388
Q gi|254780313|r   65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAI--------DILDME-PILGVKFFKFDFLDLDSWEFIRQAIGGN  135 (227)
Q Consensus        65 ~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigV--------Dl~~~~-~i~gv~~~~gDi~~~~~~~~i~~~l~~~  135 (227)
                      ++||..||=||||-|--.-.+++.+++.|   .|+||        ||..|. .-+|+.-|..|...+.-.    ..+-+-
T Consensus       154 ikpGsKVLYLGAasGttVSHvSDiVGpeG---~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KY----RmlVgm  226 (317)
T KOG1596         154 IKPGSKVLYLGAASGTTVSHVSDIVGPEG---CVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKY----RMLVGM  226 (317)
T ss_pred             ECCCCEEEEEECCCCCEEEHHHCCCCCCC---EEEEEEECCCCHHHHHHHHHCCCCCEEEEECCCCCHHE----EEEEEE
T ss_conf             35886699963367843330000307774---39999843553288998764268700245047785003----566105


Q ss_pred             CCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf             7489753202110222101578898999889876411487746999930
Q gi|254780313|r  136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF  184 (227)
Q Consensus       136 ~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F  184 (227)
                      +|+|.||.|+       -|++++..|+      |..+|++||.||+-+-
T Consensus       227 VDvIFaDvaq-------pdq~RivaLN------A~~FLk~gGhfvisik  262 (317)
T KOG1596         227 VDVIFADVAQ-------PDQARIVALN------AQYFLKNGGHFVISIK  262 (317)
T ss_pred             EEEEECCCCC-------CHHHHHHHHH------HHHHHCCCCEEEEEEE
T ss_conf             7789626897-------0344545334------6665026871899985


No 64 
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=97.87  E-value=0.0001  Score=50.00  Aligned_cols=138  Identities=19%  Similarity=0.245  Sum_probs=91.0

Q ss_pred             CHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CC--CCCC-CEE
Q ss_conf             44799999999986458313796788850455306899999706878832786411213---------33--4698-178
Q gi|254780313|r   47 WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------ME--PILG-VKF  114 (227)
Q Consensus        47 yrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~--~i~g-v~~  114 (227)
                      |.-=|+|    |-.+-+| .||.+|+|-|.+-|.-|-|.+..+++.|   +|+++|+.+         ++  -+.+ |.+
T Consensus        79 yPKD~~~----I~~~~gi-~pg~rVlEAGtGSG~lt~~La~~vg~~G---~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~  150 (256)
T COG2519          79 YPKDAGY----IVARLGI-SPGSRVLEAGTGSGALTAYLARAVGPEG---HVTTYEIREDFAKTARENLSEFGLGDRVTL  150 (256)
T ss_pred             CCCCHHH----HHHHCCC-CCCCEEEECCCCCHHHHHHHHHHHCCCC---EEEEEEECHHHHHHHHHHHHHHCCCCCEEE
T ss_conf             5777999----9987099-9887899815680599999999648884---599999527899999999998424561378


Q ss_pred             EECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHH
Q ss_conf             30112207999999973138874897532021102221015788989998898764114877469999305999899999
Q gi|254780313|r  115 FKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILC  194 (227)
Q Consensus       115 ~~gDi~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~  194 (227)
                      ..+|+.+...        ...+|+|+-|| |+-               -.+++-+.+.|+|||.+++=+=.-+-.+....
T Consensus       151 ~~~Dv~~~~~--------~~~vDav~LDm-p~P---------------W~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~  206 (256)
T COG2519         151 KLGDVREGID--------EEDVDAVFLDL-PDP---------------WNVLEHVSDALKPGGVVVVYSPTVEQVEKTVE  206 (256)
T ss_pred             EECCCCCCCC--------CCCCCEEEECC-CCH---------------HHHHHHHHHHHCCCCEEEEECCCHHHHHHHHH
T ss_conf             7054000246--------55467799758-984---------------89999999871799679998397899999999


Q ss_pred             HHHHH-CCEEE---------EECCCCCCCCCC
Q ss_conf             99862-58469---------976866575582
Q gi|254780313|r  195 LLKKH-FQKVI---------HVKPVASRAESV  216 (227)
Q Consensus       195 ~l~~~-F~~V~---------~~KP~aSR~~S~  216 (227)
                      .|+.. |....         -+++.+.|+++.
T Consensus       207 ~l~~~g~~~ie~~E~l~R~~~v~~~~~RP~~~  238 (256)
T COG2519         207 ALRERGFVDIEAVETLVRRWEVRKEATRPETR  238 (256)
T ss_pred             HHHHCCCCCHHHHEEEEHEEEECCCCCCCCCC
T ss_conf             99866951502320310002320265575510


No 65 
>PRK09329 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.86  E-value=0.00054  Score=45.49  Aligned_cols=137  Identities=15%  Similarity=0.140  Sum_probs=81.7

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC---------CC-CCCCEEEECCCCHHHHHHHHHHHCCCCC
Q ss_conf             7967888504553068999997068788327864112133---------34-6981783011220799999997313887
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM---------EP-ILGVKFFKFDFLDLDSWEFIRQAIGGNP  136 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~---------~~-i~gv~~~~gDi~~~~~~~~i~~~l~~~~  136 (227)
                      +...+||||++.|--.-.++...+    +..|+|+|+.+-         +. --.+.|+++|++++         +.+++
T Consensus       109 ~~~~~lDlGtGSG~I~isla~~~p----~~~v~avDiS~~Al~~A~~Na~~~~~~v~~~~~dl~~~---------~~~~~  175 (285)
T PRK09329        109 EIQTFYDVCCGSGCIGLAIKKHCP----HVHVVLSDICPQALAVAKSNAKSNGLDVDFLLGDLFAP---------FSRPA  175 (285)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHCC----CCEEEHHHCCHHHHHHHHHHHHHCCCCEEEEECCHHHH---------HCCCC
T ss_conf             777788845417999999998589----86588033769999999999997299479997630033---------34767


Q ss_pred             CEEEECCCHHHC-C-CCCCH-----HH---------HHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCH-HHHHHHHHHH
Q ss_conf             489753202110-2-22101-----57---------889899988987641148774699993059998-9999999862
Q gi|254780313|r  137 DLVLSDMAYPTI-G-HRKID-----HL---------RTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT-NDILCLLKKH  199 (227)
Q Consensus       137 DlVlSDmapn~S-G-~~~~D-----~~---------~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~-~~l~~~l~~~  199 (227)
                      |+|+|-= |=+. . ....|     ++         --++.....+..|..+|++||.+++-+  |.+. ..+.+.++..
T Consensus       176 DlIvSNP-PYI~~~e~~~l~~eV~~~EP~~AL~gg~dGl~~~r~i~~~a~~~L~~~G~l~~Ei--g~~Q~~~v~~l~~~~  252 (285)
T PRK09329        176 DAFVCNP-PYLSFKEFFHVDPEVRCHEPWKALVGGSSGLEFYQRIAQELPKILVPGGVGWLEI--GSSQGESVKKIFAKH  252 (285)
T ss_pred             CEEEECC-CCCCHHHHHHCCHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEE--CCHHHHHHHHHHHHC
T ss_conf             8899899-9888444544987554367099884797389999999999999600498899996--854899999999966


Q ss_pred             CCEEEEECCCCCCCCCCEEEEEEC
Q ss_conf             584699768665755824989830
Q gi|254780313|r  200 FQKVIHVKPVASRAESVEMFLLAK  223 (227)
Q Consensus       200 F~~V~~~KP~aSR~~S~E~Ylv~~  223 (227)
                      .-...++|--+.++    .|++++
T Consensus       253 g~~~~v~kDl~G~~----R~l~~~  272 (285)
T PRK09329        253 GISGRVLQDLAGLD----RFFFLE  272 (285)
T ss_pred             CCCCEEEECCCCCC----CEEEEE
T ss_conf             99642811799995----389998


No 66 
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=97.85  E-value=0.0003  Score=47.07  Aligned_cols=117  Identities=19%  Similarity=0.220  Sum_probs=75.7

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCC-----------CCCCCEEEECCCCHHHHHHHHHHHCCCC
Q ss_conf             79678885045530689999970687883278641121333-----------4698178301122079999999731388
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME-----------PILGVKFFKFDFLDLDSWEFIRQAIGGN  135 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~-----------~i~gv~~~~gDi~~~~~~~~i~~~l~~~  135 (227)
                      ...+||||||+-|--+-++.+..+    ..+|..+|...+.           .+. ..++..|.++.         +.++
T Consensus       196 ~~g~VLDlGCG~Gvi~~~la~~~p----~~~v~l~Dv~a~Al~~ar~nl~~N~l~-~~v~~sd~~~~---------v~~~  261 (342)
T PRK09489        196 TKGKVLDVGCGAGVLSAVLAQHSP----KIRLTLCDVSAPAVEASRATLAANGLE-GEVFASNVFSE---------IKGR  261 (342)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHHCCC-CEEEECCCCCC---------CCCC
T ss_conf             488478606781799999998699----976999968899999999989980988-68997564456---------5567


Q ss_pred             CCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHCCEEEEE
Q ss_conf             74897532021102221015788989998898764114877469999305999899999998625846997
Q gi|254780313|r  136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHV  206 (227)
Q Consensus       136 ~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~~~F~~V~~~  206 (227)
                      +|+|+|-= |--+|... |.    ++.+.-+.-|...|++||.+.+=.   ..+-.+...++..|..|.+.
T Consensus       262 fD~IvsNP-PFH~G~~~-~~----~i~~~fi~~A~~~L~~gG~L~iVA---Nr~LpY~~~L~~~Fg~~~~l  323 (342)
T PRK09489        262 FDMIISNP-PFHDGIQT-SL----DAAQTLIRGAVRHLNSGGELRIVA---NAFLPYPDLLDETFGSHEVL  323 (342)
T ss_pred             CCEEEECC-CCCCCCCC-CH----HHHHHHHHHHHHHHHCCCEEEEEE---CCCCCCHHHHHHHCCCEEEE
T ss_conf             89899688-52157526-58----999999999998612498899998---18989689999862982998


No 67 
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase; InterPro: IPR010233   This entry represents an O-methyltransferase, which is believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and mitochondria (COQ3) , . A separate methylase (MenG/UbiE) catalyses the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.; GO: 0008425 2-polyprenyl-6-methoxy-14-benzoquinone methyltransferase activity, 0006744 ubiquinone biosynthetic process.
Probab=97.83  E-value=3.1e-05  Score=53.23  Aligned_cols=113  Identities=24%  Similarity=0.273  Sum_probs=61.3

Q ss_pred             HHHHHHH--HCCCC-CCCCEEEEEECCCCHHHHHHHHHHCCCCCCEE-EEEECCCCCCCCCCCEEE------ECC----C
Q ss_conf             9999986--45831-37967888504553068999997068788327-864112133346981783------011----2
Q gi|254780313|r   54 KLLQINE--KHQIL-QSNRRIVDLGSSPGSWSQVAARITGSNANNTR-VVAIDILDMEPILGVKFF------KFD----F  119 (227)
Q Consensus        54 KL~eId~--kf~l~-k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~-VigVDl~~~~~i~gv~~~------~gD----i  119 (227)
                      .|.|.||  +-+|. ++|.+|||+||+=|==|+=.++    .  +.. |+|||..+ +.|.-++.+      +-|    |
T Consensus        68 ~l~E~QE~~~~~~~~~~G~~vLDVGCGGGlLsE~lAR----~--Ga~~V~GID~~~-~~i~~Ak~Ha~~~~~~~~~~K~i  140 (275)
T TIGR01983        68 PLKEDQESIRDELLKDSGLRVLDVGCGGGLLSEPLAR----L--GANKVTGIDASE-ENIEVAKLHAKKDPLQEALDKKI  140 (275)
T ss_pred             CCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHH----C--CCCEEEEEECHH-HHHHHHHHHHHHCCCHHHHHHHH
T ss_conf             7010255677634117897799842785788899975----5--884257752117-79999998887334023311114


Q ss_pred             -CHHHHHHHHHHHC--CCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf             -2079999999731--3887489753202110222101578898999889876411487746999930
Q gi|254780313|r  120 -LDLDSWEFIRQAI--GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF  184 (227)
Q Consensus       120 -~~~~~~~~i~~~l--~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F  184 (227)
                       +.-.+.+++.+.-  .+.||+|+|=        .-+.|=.-.   ...+.-|..+|||||.+++=+.
T Consensus       141 ~Y~~~~~E~l~~~~h~~~~FD~V~~m--------EvlEHV~dp---~~f~~~c~~llkPgG~lF~STI  197 (275)
T TIGR01983       141 EYRCTSVEELAEEQHTKKSFDVVTCM--------EVLEHVPDP---QAFIKACAQLLKPGGILFFSTI  197 (275)
T ss_pred             HHHHHHHHHHHCCCCCCCCCCEEEEE--------EEEECCCCH---HHHHHHHHHHCCCCCCEEEECC
T ss_conf             54443078873055784157337643--------200002788---8999999985089984897300


No 68 
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=97.80  E-value=0.00075  Score=44.60  Aligned_cols=114  Identities=18%  Similarity=0.313  Sum_probs=69.9

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCC---CC-----CC----EEEECCCCHHHHHHHHHHH
Q ss_conf             313796788850455306899999706878832786411213334---69-----81----7830112207999999973
Q gi|254780313|r   64 ILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP---IL-----GV----KFFKFDFLDLDSWEFIRQA  131 (227)
Q Consensus        64 l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~---i~-----gv----~~~~gDi~~~~~~~~i~~~  131 (227)
                      +.++|.+|||+||+-|=-+- |+.+.|.    ..|+|+|+-|..-   .+     ++    .+..++          ...
T Consensus       159 ~~~~~~~vLDvG~GSGILaI-aA~klGa----~~v~a~DiD~~Av~~a~eN~~lN~v~~~~~~~~~~----------~~~  223 (298)
T PRK00517        159 LVLPGKTVLDVGCGSGILAI-AAAKLGA----KPVLAIDIDPQAVEAARENAELNGVDDRLELYLPE----------DQP  223 (298)
T ss_pred             HCCCCCEEEEECCCCHHHHH-HHHHCCC----CEEEEEECCHHHHHHHHHHHHHCCCCCCEEEECCC----------CCC
T ss_conf             35468868871577069999-9997499----84999989899999999999986998426896166----------434


Q ss_pred             CCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHH-CCEEEEE
Q ss_conf             13887489753202110222101578898999889876411487746999930599989999999862-5846997
Q gi|254780313|r  132 IGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH-FQKVIHV  206 (227)
Q Consensus       132 l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~~~-F~~V~~~  206 (227)
                      ..+++|+|++-+-.++          .+.|    ..-..+.|+|||.+++-=+--+....+...+..+ |+-+...
T Consensus       224 ~~~~~DlvvANIla~v----------l~~l----~~~~~~~l~~~G~lilSGIl~~~~~~v~~~~~~~g~~~~~~~  285 (298)
T PRK00517        224 LEGKADVIVANILANP----------LIEL----APDLAALVKPGGRLILSGILAEQADEVLEAYEDAGFTLDEVA  285 (298)
T ss_pred             CCCCCCEEEEECCHHH----------HHHH----HHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf             4676468997315899----------9999----999999738997999927848899999999998799897886


No 69 
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=97.80  E-value=0.00053  Score=45.54  Aligned_cols=118  Identities=19%  Similarity=0.283  Sum_probs=76.5

Q ss_pred             CCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC-----------CCCCCCEEEECCCCHHHHHHHHHHHCCCCC
Q ss_conf             967888504553068999997068788327864112133-----------346981783011220799999997313887
Q gi|254780313|r   68 NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM-----------EPILGVKFFKFDFLDLDSWEFIRQAIGGNP  136 (227)
Q Consensus        68 g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~-----------~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~  136 (227)
                      +.+|+||||+=|--.-++++..+    ...|.=||+..+           ..+++..++..|+.+.         ..+++
T Consensus       159 ~~~vlDlGCG~Gvlg~~la~~~p----~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~---------v~~kf  225 (300)
T COG2813         159 GGKVLDLGCGYGVLGLVLAKKSP----QAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEP---------VEGKF  225 (300)
T ss_pred             CCCEEEECCCCCHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCCC---------CCCCC
T ss_conf             99688707884299999998689----872899826699999988769973987637998124466---------54400


Q ss_pred             CEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHCCEEEEEC
Q ss_conf             48975320211022210157889899988987641148774699993059998999999986258469976
Q gi|254780313|r  137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK  207 (227)
Q Consensus       137 DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~~~F~~V~~~K  207 (227)
                      |+|+|-  |.+---+.+++    .+....+.-|.+.|++||.+-+=.-   .+......|+..|.+|.++.
T Consensus       226 d~IisN--PPfh~G~~v~~----~~~~~ii~~A~~~L~~gGeL~iVan---~~l~y~~~L~~~Fg~v~~la  287 (300)
T COG2813         226 DLIISN--PPFHAGKAVVH----SLAQEIIAAAARHLKPGGELWIVAN---RHLPYEKKLKELFGNVEVLA  287 (300)
T ss_pred             CEEEEC--CCCCCCCCHHH----HHHHHHHHHHHHHHCCCCEEEEEEC---CCCCHHHHHHHHCCCEEEEE
T ss_conf             689848--88467710167----8899999999976045977999975---88896899998628779998


No 70 
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=97.76  E-value=0.00016  Score=48.83  Aligned_cols=125  Identities=14%  Similarity=0.224  Sum_probs=70.1

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCC---CCCCEEEECC--CCHHHHHHHHHHHCCCCCCE
Q ss_conf             313796788850455306899999706878832786411213334---6981783011--22079999999731388748
Q gi|254780313|r   64 ILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP---ILGVKFFKFD--FLDLDSWEFIRQAIGGNPDL  138 (227)
Q Consensus        64 l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~---i~gv~~~~gD--i~~~~~~~~i~~~l~~~~Dl  138 (227)
                      +.+++.+|||+||+-|=-+- |+.+.|.    .+|+|+|+-|..-   -+|+..-..+  ++... ........++++|+
T Consensus       159 ~~~~g~~vlDvGcGSGILaI-Aa~kLGA----~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~-~~~~~~~~~~~~Dv  232 (300)
T COG2264         159 LLKKGKTVLDVGCGSGILAI-AAAKLGA----KKVVGVDIDPQAVEAARENARLNGVELLVQAKG-FLLLEVPENGPFDV  232 (300)
T ss_pred             HHCCCCEEEEECCCHHHHHH-HHHHCCC----CEEEEECCCHHHHHHHHHHHHHCCCCHHHHCCC-CCCHHHCCCCCCCE
T ss_conf             60589879982678159999-9998198----668997188899999999999769960220034-56300013686568


Q ss_pred             EEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHH-HHHCCEEEEECC
Q ss_conf             9753202110222101578898999889876411487746999930599989999999-862584699768
Q gi|254780313|r  139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL-KKHFQKVIHVKP  208 (227)
Q Consensus       139 VlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l-~~~F~~V~~~KP  208 (227)
                      |++-+-.++              ......-....|+|||.++.-=.-....+.+...+ +.-|.-+....+
T Consensus       233 IVANILA~v--------------l~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~~~~  289 (300)
T COG2264         233 IVANILAEV--------------LVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEVLER  289 (300)
T ss_pred             EEEHHHHHH--------------HHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf             986052789--------------999999999870889369998620758999999998589768689700


No 71 
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=97.75  E-value=0.00049  Score=45.73  Aligned_cols=147  Identities=20%  Similarity=0.207  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC-CC----------CCCCCEEEE
Q ss_conf             4799999999986458313796788850455306899999706878832786411213-33----------469817830
Q gi|254780313|r   48 RARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-ME----------PILGVKFFK  116 (227)
Q Consensus        48 rsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~-~~----------~i~gv~~~~  116 (227)
                      -||+.--|.++       ++|..|+|==|+.||++ +.+.++|     ..++|.|+.. |-          .+++..++.
T Consensus       185 lAR~mVNLa~v-------~~G~~vlDPFcGTGgiL-iEagl~G-----~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~  251 (347)
T COG1041         185 LARAMVNLARV-------KRGELVLDPFCGTGGIL-IEAGLMG-----ARVIGSDIDERMVRGAKINLEYYGIEDYPVLK  251 (347)
T ss_pred             HHHHHHHHHCC-------CCCCEEECCCCCCCHHH-HHHHHCC-----CEEEECCHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             99998777416-------46987645767834888-8366427-----56760323799985566415662767616887


Q ss_pred             C-CCCHHHHHHHHHHHCCC-CCCEEEECCCHHHCCCCC-CHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHH
Q ss_conf             1-12207999999973138-874897532021102221-01578898999889876411487746999930599989999
Q gi|254780313|r  117 F-DFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRK-IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDIL  193 (227)
Q Consensus       117 g-Di~~~~~~~~i~~~l~~-~~DlVlSDmapn~SG~~~-~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~  193 (227)
                      + |.++..        +.+ .+|.|.+|. |  -|..+ +--...-+|.+.+++.+.++|++||-+|.=..    .....
T Consensus       252 ~~Da~~lp--------l~~~~vdaIatDP-P--YGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p----~~~~~  316 (347)
T COG1041         252 VLDATNLP--------LRDNSVDAIATDP-P--YGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP----RDPRH  316 (347)
T ss_pred             ECCCCCCC--------CCCCCCCEEEECC-C--CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECC----CCCHH
T ss_conf             30221277--------8877423588469-9--87100245552899999999999987304848999617----86055


Q ss_pred             HHHHHHCCEEEEECCCCCCCCCCEEEEEE
Q ss_conf             99986258469976866575582498983
Q gi|254780313|r  194 CLLKKHFQKVIHVKPVASRAESVEMFLLA  222 (227)
Q Consensus       194 ~~l~~~F~~V~~~KP~aSR~~S~E~Ylv~  222 (227)
                      ......|+-+..+.--.-++=++.+|++-
T Consensus       317 ~~~~~~f~v~~~~~~~~H~sLtR~i~v~~  345 (347)
T COG1041         317 ELEELGFKVLGRFTMRVHGSLTRVIYVVR  345 (347)
T ss_pred             HHHHCCCEEEEEEEEEECCCEEEEEEEEE
T ss_conf             67643965999997764174689999986


No 72 
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=97.75  E-value=0.0001  Score=50.01  Aligned_cols=102  Identities=24%  Similarity=0.375  Sum_probs=59.3

Q ss_pred             HHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCC---------CCEEEECCCCHHHHHHHH
Q ss_conf             98645831379678885045530689999970687883278641121333469---------817830112207999999
Q gi|254780313|r   58 INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPIL---------GVKFFKFDFLDLDSWEFI  128 (227)
Q Consensus        58 Id~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~i~---------gv~~~~gDi~~~~~~~~i  128 (227)
                      +..+|+  -+|.+|||.||+=|..|+-+++.      +-.|.|+|+.+ ++|+         |+.   .|.... +.+.+
T Consensus        52 ~~~~~~--l~g~~vLDvGCGgG~Lse~mAr~------Ga~VtgiD~se-~~I~~Ak~ha~e~gv~---i~y~~~-~~edl  118 (243)
T COG2227          52 ARLRFD--LPGLRVLDVGCGGGILSEPLARL------GASVTGIDASE-KPIEVAKLHALESGVN---IDYRQA-TVEDL  118 (243)
T ss_pred             HHHCCC--CCCCEEEEECCCCCHHHHHHHHC------CCEEEEECCCH-HHHHHHHHHHHHCCCC---CCCHHH-HHHHH
T ss_conf             420147--77770887458832864999977------99469743876-7789998754424632---252233-29999


Q ss_pred             HHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf             97313887489753202110222101578898999889876411487746999930
Q gi|254780313|r  129 RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF  184 (227)
Q Consensus       129 ~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F  184 (227)
                      .. .+++||+|+|=        .-+.|.-.-+   ..+.-|...++|||.++.-.-
T Consensus       119 ~~-~~~~FDvV~cm--------EVlEHv~dp~---~~~~~c~~lvkP~G~lf~STi  162 (243)
T COG2227         119 AS-AGGQFDVVTCM--------EVLEHVPDPE---SFLRACAKLVKPGGILFLSTI  162 (243)
T ss_pred             HH-CCCCCCEEEEH--------HHHHCCCCHH---HHHHHHHHHCCCCCEEEEECC
T ss_conf             72-48974489773--------5877169999---999999986299928999420


No 73 
>pfam02475 Met_10 Met-10+ like-protein. The methionine-10 mutant allele of N. crassa codes for a protein of unknown function. However, homologous proteins have been found in yeast suggesting this protein may be involved in methionine biosynthesis, transport and/or utilisation.
Probab=97.74  E-value=0.00015  Score=48.97  Aligned_cols=90  Identities=21%  Similarity=0.282  Sum_probs=63.9

Q ss_pred             CCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC-----------CCCCC-CEEEECCCCHHHHHHHHHH
Q ss_conf             83137967888504553068999997068788327864112133-----------34698-1783011220799999997
Q gi|254780313|r   63 QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM-----------EPILG-VKFFKFDFLDLDSWEFIRQ  130 (227)
Q Consensus        63 ~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~-----------~~i~g-v~~~~gDi~~~~~~~~i~~  130 (227)
                      +++++|.+|+|+.|+=|.|+-.+++..    ...+|+|+|+.|-           ..+.+ +..++||..+.     +  
T Consensus        96 ~~~~~ge~VlD~faGvG~f~l~~ak~~----~~~~V~a~DlNp~a~~~l~~N~~lN~v~~~i~~~~gD~~~~-----~--  164 (199)
T pfam02475        96 KLVKEGEVVVDMFAGIGPFSIPIAKHS----KAKRVYAVELNPEAVKYLKENIKLNKVEGVISPILGDVRDV-----I--  164 (199)
T ss_pred             HHCCCCCEEEECCCCCCHHHHHHHHCC----CCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHHH-----C--
T ss_conf             744899889981688657789986407----86489998289999999999999809998369992878786-----0--


Q ss_pred             HCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf             3138874897532021102221015788989998898764114877469
Q gi|254780313|r  131 AIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF  179 (227)
Q Consensus       131 ~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~f  179 (227)
                       ..+++|.|+.+. |..              +..-|..|+..|++||..
T Consensus       165 -~~~~~Drvimnl-P~~--------------a~~fL~~A~~~lk~gg~i  197 (199)
T pfam02475       165 -LEGVADRVIMNL-PKS--------------AHEFLDKALRAVKDGGVI  197 (199)
T ss_pred             -CCCCCCEEEECC-CCC--------------HHHHHHHHHHHHCCCCEE
T ss_conf             -467400999489-731--------------699999999985589898


No 74 
>pfam08242 Methyltransf_12 Methyltransferase domain. Members of this family are SAM dependent methyltransferases.
Probab=97.70  E-value=5.1e-05  Score=51.91  Aligned_cols=87  Identities=20%  Similarity=0.233  Sum_probs=52.2

Q ss_pred             EEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC-C----------CCCCCEEEECCCCHHHHHHHHHHHCCCCCCEEE
Q ss_conf             88504553068999997068788327864112133-3----------469817830112207999999973138874897
Q gi|254780313|r   72 VDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM-E----------PILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVL  140 (227)
Q Consensus        72 lDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~-~----------~i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVl  140 (227)
                      ||+||++|.++..+++...    ...|+|+|+.+- -          +.....+++.+..+.      .....+.||+|+
T Consensus         1 LDvGcG~G~~~~~l~~~~~----~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~fD~I~   70 (98)
T pfam08242         1 LDIGCGTGTLLRALLEALP----GLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDA------IDLDPGSFDVVV   70 (98)
T ss_pred             CCCCCCCCHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHHCCCCCHHHEEECCCH------HHCCCCCCCEEE
T ss_conf             9886337999999998789----988999859889999999999871345311100000002------220358988996


Q ss_pred             ECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf             532021102221015788989998898764114877469
Q gi|254780313|r  141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF  179 (227)
Q Consensus       141 SDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~f  179 (227)
                      |-.+..-.    -|.       ..++.-+.++|+|||.+
T Consensus        71 ~~~vl~~~----~~~-------~~~l~~~~r~LkpgG~l   98 (98)
T pfam08242        71 ASNVLHHL----ADP-------RAVLRNLRRLLKPGGVL   98 (98)
T ss_pred             ECCCHHHC----CCH-------HHHHHHHHHHCCCCCCC
T ss_conf             10417725----899-------99999999974999899


No 75 
>KOG1540 consensus
Probab=97.68  E-value=0.00057  Score=45.31  Aligned_cols=140  Identities=19%  Similarity=0.203  Sum_probs=90.7

Q ss_pred             CCHHHHHHHHHHHHHHC-----CC--------C--CCCCEEEEEECCCCHHHHHHHHHHCCC--CCCEEEEEECCCC---
Q ss_conf             84479999999998645-----83--------1--379678885045530689999970687--8832786411213---
Q gi|254780313|r   46 GWRARSAYKLLQINEKH-----QI--------L--QSNRRIVDLGSSPGSWSQVAARITGSN--ANNTRVVAIDILD---  105 (227)
Q Consensus        46 gyrsRaafKL~eId~kf-----~l--------~--k~g~~VlDLGaaPGgWsQva~~~~~~~--~~~~~VigVDl~~---  105 (227)
                      .--++-|+|+-.+++--     +|        +  .+++.|||+|++.|--+=-+.+.+++.  ....+|..+|+.|   
T Consensus        64 ~vF~~vA~~YD~mND~mSlGiHRlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL  143 (296)
T KOG1540          64 HVFESVAKKYDIMNDAMSLGIHRLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHML  143 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCHHHH
T ss_conf             99998888887788876212367888876621587778758983477525677798761134577776179993898999


Q ss_pred             -----------CCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             -----------334698178301122079999999731388748975320211022210157889899988987641148
Q gi|254780313|r  106 -----------MEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLN  174 (227)
Q Consensus       106 -----------~~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk  174 (227)
                                 ..+-..+.++.||..+..       +-...+|..+.-.     |++..-|.      +.+|.-|-++||
T Consensus       144 ~vgkqRa~~~~l~~~~~~~w~~~dAE~Lp-------Fdd~s~D~yTiaf-----GIRN~th~------~k~l~EAYRVLK  205 (296)
T KOG1540         144 AVGKQRAKKRPLKASSRVEWVEGDAEDLP-------FDDDSFDAYTIAF-----GIRNVTHI------QKALREAYRVLK  205 (296)
T ss_pred             HHHHHHHHHCCCCCCCCEEEEECCCCCCC-------CCCCCCEEEEEEC-----CEECCCCH------HHHHHHHHHHCC
T ss_conf             99987775159776871699947701089-------9977511588842-----11147877------899999987527


Q ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHCCEE
Q ss_conf             77469999305999899999998625846
Q gi|254780313|r  175 IGGDFLVKTFQGGTTNDILCLLKKHFQKV  203 (227)
Q Consensus       175 ~gG~fV~K~F~G~~~~~l~~~l~~~F~~V  203 (227)
                      |||.|.|=-|.-.+-+.+......++-.|
T Consensus       206 pGGrf~cLeFskv~~~~l~~fy~~ysf~V  234 (296)
T KOG1540         206 PGGRFSCLEFSKVENEPLKWFYDQYSFDV  234 (296)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf             78679999735454077899997122232


No 76 
>TIGR02081 metW methionine biosynthesis protein MetW; InterPro: IPR010743   This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In Pseudomonas putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells . .
Probab=97.66  E-value=5.8e-05  Score=51.56  Aligned_cols=75  Identities=17%  Similarity=0.234  Sum_probs=53.4

Q ss_pred             CCCCCCCCEEEEEECCCCHHHHHHHHHHCCCC---CCEEEEEECCCC---CCC-CCCCEEEECCCCHHHHHHHHHHHCCC
Q ss_conf             58313796788850455306899999706878---832786411213---334-69817830112207999999973138
Q gi|254780313|r   62 HQILQSNRRIVDLGSSPGSWSQVAARITGSNA---NNTRVVAIDILD---MEP-ILGVKFFKFDFLDLDSWEFIRQAIGG  134 (227)
Q Consensus        62 f~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~---~~~~VigVDl~~---~~~-i~gv~~~~gDi~~~~~~~~i~~~l~~  134 (227)
                      +++|.||.+||||||+=|.=+.+..+.-.-.|   ..-++.||-+..   ++. -.||..||+|+.+-     +..+-+.
T Consensus         8 ~~~Ip~GSRVLDLGCGdG~LL~~L~d~k~v~GPPttehRL~G~Eid~~~v~Ac~~RGv~VIq~Dld~G-----L~~F~D~   82 (205)
T TIGR02081         8 LDLIPPGSRVLDLGCGDGELLALLRDEKQVRGPPTTEHRLYGIEIDQDGVLACVARGVSVIQGDLDEG-----LEAFPDK   82 (205)
T ss_pred             HHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEECHHHHHHHHHCCCCEECCCCCCC-----CCCCCCC
T ss_conf             86168887364101688789999997437898887120001023454459999862520130060034-----0116788


Q ss_pred             CCCEEEE
Q ss_conf             8748975
Q gi|254780313|r  135 NPDLVLS  141 (227)
Q Consensus       135 ~~DlVlS  141 (227)
                      .||.|+=
T Consensus        83 ~FD~ViL   89 (205)
T TIGR02081        83 SFDYVIL   89 (205)
T ss_pred             CCCEEEE
T ss_conf             7662542


No 77 
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=97.66  E-value=0.00057  Score=45.32  Aligned_cols=129  Identities=22%  Similarity=0.262  Sum_probs=77.0

Q ss_pred             EEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC---------C--CCCCCEEEECCCCHHHHHHHHHHHCCCCCCE
Q ss_conf             7888504553068999997068788327864112133---------3--4698178301122079999999731388748
Q gi|254780313|r   70 RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM---------E--PILGVKFFKFDFLDLDSWEFIRQAIGGNPDL  138 (227)
Q Consensus        70 ~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~---------~--~i~gv~~~~gDi~~~~~~~~i~~~l~~~~Dl  138 (227)
                      +|+||||+-|-=.-.++...+    ...|+|+|+.+-         +  .+.++.++++|.++.         +.++||+
T Consensus       113 ~ilDlGTGSG~iai~la~~~~----~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~---------~~~~fDl  179 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGP----DAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEP---------LRGKFDL  179 (280)
T ss_pred             CEEEECCCCCHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCHHHC---------CCCCCCE
T ss_conf             189965883199999996189----887999989999999999999982897479874003334---------6888577


Q ss_pred             EEECCCHHHCCC------CCCHH---------HHHHHHHHHHHHHHHHCCCCCCEEEEEEE--CCCCHHHHHHHHHHHCC
Q ss_conf             975320211022------21015---------78898999889876411487746999930--59998999999986258
Q gi|254780313|r  139 VLSDMAYPTIGH------RKIDH---------LRTMSLCEAATFFALEMLNIGGDFLVKTF--QGGTTNDILCLLKKHFQ  201 (227)
Q Consensus       139 VlSDmapn~SG~------~~~D~---------~~~~~L~~~al~~A~~~Lk~gG~fV~K~F--~G~~~~~l~~~l~~~F~  201 (227)
                      |+|-- |=+...      ...++         ..-++.....+.-+..+|++||.+++-+=  |+....+++..... |.
T Consensus       180 IVsNP-PYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~~~~~~-~~  257 (280)
T COG2890         180 IVSNP-PYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALFEDTGF-FE  257 (280)
T ss_pred             EEECC-CCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCC-CE
T ss_conf             99689-98888521137421358979987248777899999999899872868289999769848999999997498-44


Q ss_pred             EEEEECCCCCCC
Q ss_conf             469976866575
Q gi|254780313|r  202 KVIHVKPVASRA  213 (227)
Q Consensus       202 ~V~~~KP~aSR~  213 (227)
                      .|...|.-+.+.
T Consensus       258 ~v~~~~d~~g~~  269 (280)
T COG2890         258 IVETLKDLFGRD  269 (280)
T ss_pred             EEEEEECCCCCE
T ss_conf             766551456763


No 78 
>pfam06325 PrmA Ribosomal protein L11 methyltransferase (PrmA). This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences.
Probab=97.66  E-value=4.8e-05  Score=52.05  Aligned_cols=119  Identities=16%  Similarity=0.245  Sum_probs=66.5

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCC---CCCCEEE--ECCCCHHHHHHHHHHHCCCCCCE
Q ss_conf             313796788850455306899999706878832786411213334---6981783--01122079999999731388748
Q gi|254780313|r   64 ILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP---ILGVKFF--KFDFLDLDSWEFIRQAIGGNPDL  138 (227)
Q Consensus        64 l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~---i~gv~~~--~gDi~~~~~~~~i~~~l~~~~Dl  138 (227)
                      ..++|++|||+||+-|=-+- |+.+.|.    ..|+|+|+.|..-   .+|+..-  ...+.-.    .......+++|+
T Consensus       157 ~~~~~~~vlD~GcGSGILaI-aA~klGa----~~v~a~DiDp~Av~~a~eN~~~N~v~~~~~~~----~~~~~~~~~~Dl  227 (294)
T pfam06325       157 LVKPGETVLDVGCGSGILAI-AALKLGA----KKVVGVDIDPVAVRAAKENAELNGVEAQLEVY----LPGDLPEGKADV  227 (294)
T ss_pred             HCCCCCEEEEECCCHHHHHH-HHHHCCC----CCEEEEECCHHHHHHHHHHHHHCCCCCCEEEE----CCCCCCCCCCCE
T ss_conf             50369867850565089999-9997599----96899988899999999999976998317996----443155664578


Q ss_pred             EEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHCCEEEE
Q ss_conf             9753202110222101578898999889876411487746999930599989999999862584699
Q gi|254780313|r  139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH  205 (227)
Q Consensus       139 VlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~~~F~~V~~  205 (227)
                      |++-+-.++             |... .......|+|||.+++-=+--....++...++..|.-+..
T Consensus       228 IvANIla~~-------------L~~l-~~~~~~~l~~~G~lilSGil~~q~~~v~~a~~~g~~~~~~  280 (294)
T pfam06325       228 VVANILADP-------------LIEL-APDIYALVKPGGYLILSGILEEQADDVAEAYSQGFELITV  280 (294)
T ss_pred             EEEHHCHHH-------------HHHH-HHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf             984108999-------------9999-9999997389989999178289999999999869977437


No 79 
>PRK04457 spermidine synthase; Provisional
Probab=97.64  E-value=0.0027  Score=41.08  Aligned_cols=130  Identities=18%  Similarity=0.247  Sum_probs=85.6

Q ss_pred             CCCC-CCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC----------CC--CCCCEEEECCCCHHHHHHHHHH
Q ss_conf             3137-967888504553068999997068788327864112133----------34--6981783011220799999997
Q gi|254780313|r   64 ILQS-NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM----------EP--ILGVKFFKFDFLDLDSWEFIRQ  130 (227)
Q Consensus        64 l~k~-g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~----------~~--i~gv~~~~gDi~~~~~~~~i~~  130 (227)
                      +|.| -.+||-||-+-|+-+-++.+..+    ..+|.+|+|.|-          -|  -+.+..+.+|-     .+.+.+
T Consensus        62 Lf~p~Pk~vl~iGLGgGsl~k~~~~~~P----~~~i~~VEIdp~Vi~vAr~~F~lP~dd~Rl~V~~~Dg-----~~fv~~  132 (262)
T PRK04457         62 LFNPRPQHILQIGLGGGSFAKFIDTYLP----DTRQTAVEINPQVIAVARNHFELPFEDEKFEIIEADG-----AEYIKV  132 (262)
T ss_pred             HCCCCCCEEEEEECCHHHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHCCCCCCCCCEEEEECCH-----HHHHHH
T ss_conf             6589978699992570199999998398----6758999878899999998657999997269995538-----999854


Q ss_pred             HCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECC-CCHHHHHHHHHHHCC-EEEEECC
Q ss_conf             31388748975320211022210157889899988987641148774699993059-998999999986258-4699768
Q gi|254780313|r  131 AIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG-GTTNDILCLLKKHFQ-KVIHVKP  208 (227)
Q Consensus       131 ~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G-~~~~~l~~~l~~~F~-~V~~~KP  208 (227)
                       ..+++|+|+.|+ .+-.|...  +..+    ..=+.-|...|+++|.||+-+|.+ ..+...+..++..|. .|..+.+
T Consensus       133 -~~~~~DvI~vD~-fd~~g~~~--~L~t----~~Fy~~c~~~L~~~Gvlv~Nl~~~~~~~~~~l~~i~~~F~~~~~~~~~  204 (262)
T PRK04457        133 -FPASTDVILVDG-FDGEQIVD--ALVT----QPFFRDCRNALSSDGVFVTNLWSGDKRYQRYIERLLSVFEGRVLELPA  204 (262)
T ss_pred             -CCCCCCEEEEEC-CCCCCCCC--CCCC----HHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCEEEEEEC
T ss_conf             -867778899968-89888860--0082----999999998649893999986889986599999999972873999725


Q ss_pred             CC
Q ss_conf             66
Q gi|254780313|r  209 VA  210 (227)
Q Consensus       209 ~a  210 (227)
                      ..
T Consensus       205 ~~  206 (262)
T PRK04457        205 ES  206 (262)
T ss_pred             CC
T ss_conf             89


No 80 
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.63  E-value=0.00021  Score=48.08  Aligned_cols=92  Identities=22%  Similarity=0.279  Sum_probs=67.5

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------C--CCCCCCEEEECCCCHHHHHHHHHHHCC
Q ss_conf             13796788850455306899999706878832786411213---------3--346981783011220799999997313
Q gi|254780313|r   65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------M--EPILGVKFFKFDFLDLDSWEFIRQAIG  133 (227)
Q Consensus        65 ~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~--~~i~gv~~~~gDi~~~~~~~~i~~~l~  133 (227)
                      ++|+++|||+|++-|--+-++++++++.+   +|++||..+         +  -.+.||.++.||...--.       -.
T Consensus        74 l~~~~~VLeIGtGsGY~tAlla~lvg~~g---~V~siE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~G~~-------~~  143 (214)
T PRK13942         74 LDEGQKVLEIGTGSGYHAAVVAEIVGKSG---KVTTIERIPELAEKAKKNLKKLGYENVEVILGDGTKGYE-------EN  143 (214)
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHHCCCC---CEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC-------CC
T ss_conf             99999799967995299999999747678---579997179999999999986376875898567566784-------45


Q ss_pred             CCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf             88748975320211022210157889899988987641148774699993
Q gi|254780313|r  134 GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT  183 (227)
Q Consensus       134 ~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~  183 (227)
                      .+||.|+..+|...     +-.            --...|++||.+|+-+
T Consensus       144 apfD~Iiv~aa~~~-----iP~------------~l~~qL~~gGrLV~Pv  176 (214)
T PRK13942        144 APYDRIYVTAAGPD-----IPK------------PLLEQLKDGGIMVIPV  176 (214)
T ss_pred             CCCCEEEEEECCCC-----CCH------------HHHHHCCCCCEEEEEE
T ss_conf             98127999851765-----789------------9999628895899998


No 81 
>pfam04989 CmcI Cephalosporin hydroxylase. Members of this family are about 220 amino acids long. The CmcI protein is presumed to represent the cephalosporin-7--hydroxylase. However this has not been experimentally verified.
Probab=97.60  E-value=0.00097  Score=43.88  Aligned_cols=104  Identities=18%  Similarity=0.151  Sum_probs=72.5

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC------CCCCCCCEEEECCCCHHHHHHHHHHHCCCCC-CEE
Q ss_conf             796788850455306899999706878832786411213------3346981783011220799999997313887-489
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD------MEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLV  139 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~------~~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~-DlV  139 (227)
                      +=+.|+++|.|-||=+-+.+..+..-+..++|+|||+..      .-.-+.+++++||-++.++.+.+.......- =+|
T Consensus        32 kPd~IIE~G~a~GGS~l~~A~~l~~~~~~~~VigiDi~i~~~~~~~i~~~~I~lieg~s~d~~~~~~v~~~~~~~~~vlV  111 (202)
T pfam04989        32 KPDLIIETGIAHGGSALFFASMLELLGSDGKVLGIDIDIREHNRPAIEAPRITFIQGSSTDPEIIEQVRSLAEPPHPVLV  111 (202)
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCEEE
T ss_conf             99989996167662899999999973899879999576443354353168769997685678899889998537985899


Q ss_pred             EECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf             7532021102221015788989998898764114877469999
Q gi|254780313|r  140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK  182 (227)
Q Consensus       140 lSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K  182 (227)
                      +-|      .+++.+|      +...|++-..++.+|.-+|+-
T Consensus       112 ilD------s~Ht~~h------Vl~eL~~y~~lv~~GsY~IVe  142 (202)
T pfam04989       112 ILD------SDHTHEH------VLAELRAYAPLVSEGSYLVVE  142 (202)
T ss_pred             EEC------CCCCHHH------HHHHHHHHHHHCCCCCEEEEE
T ss_conf             964------8865688------999999875215768899995


No 82 
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.59  E-value=0.00075  Score=44.59  Aligned_cols=103  Identities=17%  Similarity=0.192  Sum_probs=63.8

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC-----------CCC-CCCEEEECCCCHHHHHHHHHHHCCC
Q ss_conf             7967888504553068999997068788327864112133-----------346-9817830112207999999973138
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM-----------EPI-LGVKFFKFDFLDLDSWEFIRQAIGG  134 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~-----------~~i-~gv~~~~gDi~~~~~~~~i~~~l~~  134 (227)
                      +..+|||||++.|--.--++...    .+..|+|+|+.+-           -.+ ..+.|+++|.++.        .-++
T Consensus       135 ~~~~ILDLGTGSGcIaISLa~e~----p~a~v~avDIS~~AL~vAk~Na~~~~v~~ri~fi~sdwfe~--------l~~~  202 (503)
T PRK01544        135 KFLNILELGTGSGCIAISLLCEL----PNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN--------IGKQ  202 (503)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHC----CCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCHHC--------CCCC
T ss_conf             57727884666799999999867----89989999898999999999999808820179996553101--------5888


Q ss_pred             CCCEEEECCCHHHCCCC--------CCHHHHH---------HHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf             87489753202110222--------1015788---------9899988987641148774699993
Q gi|254780313|r  135 NPDLVLSDMAYPTIGHR--------KIDHLRT---------MSLCEAATFFALEMLNIGGDFLVKT  183 (227)
Q Consensus       135 ~~DlVlSDmapn~SG~~--------~~D~~~~---------~~L~~~al~~A~~~Lk~gG~fV~K~  183 (227)
                      +||+|+|-  |.---..        ..++.=.         ++-......-|..+|+|||.+++-+
T Consensus       203 kFDlIVSN--PPYI~~~e~~~L~~eV~~yEP~lAL~ggeDGL~~Yr~Ia~~a~~~Lkp~G~l~lEI  266 (503)
T PRK01544        203 KFDFIVSN--PPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI  266 (503)
T ss_pred             CCCEEEEC--CCCCCHHHHHHCCHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf             72479838--99887566665276653169378864887628999999998898528898899997


No 83 
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=97.58  E-value=0.00043  Score=46.08  Aligned_cols=108  Identities=17%  Similarity=0.198  Sum_probs=70.2

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC------CCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCEEE
Q ss_conf             796788850455306899999706878832786411213------33469817830112207999999973138874897
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD------MEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVL  140 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~------~~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVl  140 (227)
                      ...+|||+||+-|.++.-+.+..+.. ....++|+||..      ...-+.+.+..+|..+..       +.++.+|+|+
T Consensus        85 ~~~~ilD~GCGEGyYl~~l~~~l~~~-~~~~~~G~DiSK~ai~~Aak~~~~~~~~Va~~~~lP-------~~d~s~D~vl  156 (272)
T PRK11088         85 KATAILDIGCGEGYYTHALADALPEV-TTCQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLP-------FADQSLDAII  156 (272)
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHCC-CCCCEEEEECCHHHHHHHHCCCCCCEEEEEECCCCC-------CCCCCCEEEE
T ss_conf             78648881587778999999974115-787379981179999999626888549996100188-------8766540899


Q ss_pred             ECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC-HHHHHHHHHHHCCEEE
Q ss_conf             532021102221015788989998898764114877469999305999-8999999986258469
Q gi|254780313|r  141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT-TNDILCLLKKHFQKVI  204 (227)
Q Consensus       141 SDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~-~~~l~~~l~~~F~~V~  204 (227)
                      +=-||--.     +             -..++|+|||.+|.=+ -|.+ ..+|...+   |..++
T Consensus       157 ~vFsP~~~-----~-------------Ef~RvLkp~G~li~V~-P~~~HL~eLre~l---Y~~~~  199 (272)
T PRK11088        157 RIYAPCKA-----E-------------ELARVVKPGGIVITVT-PGPRHLFELKGLI---YDEVR  199 (272)
T ss_pred             EEECCCCH-----H-------------HHHHEECCCCEEEEEE-CCHHHHHHHHHHH---HHCCC
T ss_conf             98437885-----8-------------8612463797899997-8888999999997---51566


No 84 
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=97.57  E-value=0.0009  Score=44.09  Aligned_cols=122  Identities=20%  Similarity=0.190  Sum_probs=76.2

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC---------C--CCCCCEEEECCCCHHHHHHHHHHHCC
Q ss_conf             137967888504553068999997068788327864112133---------3--46981783011220799999997313
Q gi|254780313|r   65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM---------E--PILGVKFFKFDFLDLDSWEFIRQAIG  133 (227)
Q Consensus        65 ~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~---------~--~i~gv~~~~gDi~~~~~~~~i~~~l~  133 (227)
                      ++|++.|.|+||+.|+.+--++...+    +++|++||..+-         +  -+.++..+.|+.  +..       +.
T Consensus        28 l~~~~vvwDIGaGsGsvsiEaa~~~p----~~~V~AvE~~~~~~~~i~~N~~~fg~~nv~~i~g~A--p~~-------l~   94 (186)
T PRK08287         28 LHRAKHLIDVGAGTGSVSIEAALQFP----SLQVTAIERNPAALRLIKENRQRFGCGNIDIIPGEA--PIT-------LT   94 (186)
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCC--CHH-------CC
T ss_conf             99999999957887789999999789----988999937989999999989972999879993778--110-------35


Q ss_pred             CCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHH-CCEEEEECCCCCC
Q ss_conf             887489753202110222101578898999889876411487746999930599989999999862-5846997686657
Q gi|254780313|r  134 GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH-FQKVIHVKPVASR  212 (227)
Q Consensus       134 ~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~~~-F~~V~~~KP~aSR  212 (227)
                      ..+|.|.==+    ||- .         ....++.+...|++||.+|+-.-.=+........++.. |..+.++.-..||
T Consensus        95 ~~pD~vFIGG----sgg-~---------l~~il~~~~~~L~~gGriVinavtlet~~~a~~~~~~~~~~~~e~~qv~vsr  160 (186)
T PRK08287         95 GKADAIFMGG----SGG-H---------LTAIIDWALGHLHPGGRLVLNFILQENLHSALAHLEKIGACELDCVQLQVSS  160 (186)
T ss_pred             CCCCEEEEEC----CCC-C---------HHHHHHHHHHHCCCCCEEEEEEEEHHHHHHHHHHHHHCCCCCEEEEEEEEEE
T ss_conf             7898499974----789-8---------8999999997579998999982608779999999997699761599999013


Q ss_pred             C
Q ss_conf             5
Q gi|254780313|r  213 A  213 (227)
Q Consensus       213 ~  213 (227)
                      .
T Consensus       161 ~  161 (186)
T PRK08287        161 L  161 (186)
T ss_pred             C
T ss_conf             7


No 85 
>pfam09445 Methyltransf_15 RNA cap guanine-N2 methyltransferase. RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe Tgs1 and Giardia lamblia Tgs2 catalyse methylation of the exocyclic N2 amine of 7-methylguanosine.
Probab=97.57  E-value=0.00044  Score=46.05  Aligned_cols=115  Identities=17%  Similarity=0.115  Sum_probs=67.2

Q ss_pred             CCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCC--------CC----CCCEEEECCCCHHHHHHHHHHHCCCC
Q ss_conf             9678885045530689999970687883278641121333--------46----98178301122079999999731388
Q gi|254780313|r   68 NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME--------PI----LGVKFFKFDFLDLDSWEFIRQAIGGN  135 (227)
Q Consensus        68 g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~--------~i----~gv~~~~gDi~~~~~~~~i~~~l~~~  135 (227)
                      ...|||++|+-||++--.+...      .+|+|||+.+..        .+    ..+.|++||+++..  ..+ +.-+.+
T Consensus         1 ~~ivlD~fcG~Ggn~I~fA~~~------~~Vi~vDi~~~~l~~A~~NA~iyGV~drI~fi~gD~f~~~--~~l-~~~~~~   71 (165)
T pfam09445         1 ARIILDVFCGAGGNTIQFANVF------CSVIGIDINPEHLACAQHNAEVYGVSDRIWFILGDWFELL--AKL-KFGKIP   71 (165)
T ss_pred             CCEEEECCCCCCHHHHHHHHHC------CEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHH--HHH-HHCCCC
T ss_conf             9799993778079999999758------9899997989999999998998398731799977599997--887-635887


Q ss_pred             CCEEEEC---CCHHHCCCCCCHHHHHH------HHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHH
Q ss_conf             7489753---20211022210157889------899988987641148774699993059998999999986
Q gi|254780313|r  136 PDLVLSD---MAYPTIGHRKIDHLRTM------SLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKK  198 (227)
Q Consensus       136 ~DlVlSD---mapn~SG~~~~D~~~~~------~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~~  198 (227)
                      +|+|.+|   +.|+.+.....|-..++      +|...+..++     +  ++++=+=+..+.+++......
T Consensus        72 ~DvVf~sPPWGGp~Y~~~~~fdl~~~~~p~~~~~l~~~~~~it-----~--ni~lfLPrn~d~~ql~~~~~~  136 (165)
T pfam09445        72 YDCVFLSPPWGGPSYKRQNVYDLEKKLKPYGLYQLLKESTEIS-----K--NIILFLPRNSDLNQLSSLTRE  136 (165)
T ss_pred             CCEEEECCCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHC-----C--CEEEECCCCCCHHHHHHHHHH
T ss_conf             5589977999998856567668777268779999999998636-----2--579984898998999998776


No 86 
>pfam05401 NodS Nodulation protein S (NodS). This family consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors.
Probab=97.55  E-value=0.00019  Score=48.36  Aligned_cols=115  Identities=17%  Similarity=0.265  Sum_probs=77.4

Q ss_pred             CCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCE
Q ss_conf             96788850455306899999706878832786411213---------334698178301122079999999731388748
Q gi|254780313|r   68 NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------MEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDL  138 (227)
Q Consensus        68 g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~Dl  138 (227)
                      -.+++++|||-|-+|+-.+.++.      .++++|+.+         +...++|.+.++|+-..        ...++||+
T Consensus        44 y~~alE~GCa~G~lT~~LA~RCd------rLla~Dvs~~Av~~Ar~Rla~~~hV~v~~~~vp~~--------wP~~~FDL  109 (201)
T pfam05401        44 IANALEVGCAAGAFTERLAPYCQ------RLTVIDVMPEAIARARLRMKKWSHISWIVSDVQQF--------STNELFDL  109 (201)
T ss_pred             HHHHCCCCCCCCHHHHHHHHHHH------HHHHHCCCHHHHHHHHHHHCCCCCCEEEECCCCCC--------CCCCCEEE
T ss_conf             30020435662487899999874------67321362999999999855799828982566665--------99888627


Q ss_pred             EEEC-CCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEC-------C--CCHHHHHHHHHHHCCEEEE
Q ss_conf             9753-2021102221015788989998898764114877469999305-------9--9989999999862584699
Q gi|254780313|r  139 VLSD-MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ-------G--GTTNDILCLLKKHFQKVIH  205 (227)
Q Consensus       139 VlSD-mapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~-------G--~~~~~l~~~l~~~F~~V~~  205 (227)
                      |+.- ..     ..--|.+.    ...++.-....|.|||+||.--..       |  .+.+.++..++....+|..
T Consensus       110 IV~SEVl-----YYL~d~a~----lr~~~~~~v~~LaP~G~Lvfgsarda~crrwgh~~gaetv~~~~~e~l~eve~  177 (201)
T pfam05401       110 IVVAEVL-----YYLGDVAE----MRGAVRNLVSMLAPDGQLVFGSARDANCRRWGHVAGAETVIALLNESLREVER  177 (201)
T ss_pred             EEEEHHH-----HHHCCHHH----HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             9751477-----86187999----99999999997189965997304510665510111189999999988778877


No 87 
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase; InterPro: IPR014122   MenG is a generic term for a methyltransferase that catalyses the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species..
Probab=97.47  E-value=0.00025  Score=47.55  Aligned_cols=118  Identities=15%  Similarity=0.208  Sum_probs=83.3

Q ss_pred             CCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC-----------CCCCCCCEEEECCCCHHHHHHHHHHHCCC
Q ss_conf             3796788850455306899999706878832786411213-----------33469817830112207999999973138
Q gi|254780313|r   66 QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-----------MEPILGVKFFKFDFLDLDSWEFIRQAIGG  134 (227)
Q Consensus        66 k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~-----------~~~i~gv~~~~gDi~~~~~~~~i~~~l~~  134 (227)
                      +.|..+||+||+.+-|+-..++.+|..|   .|.|+|...           -..+..+..+.|+..+...       -+.
T Consensus        44 ~~G~~~ldvCCGt~dW~~~l~~~~G~~G---~v~Gldfs~nml~~~~~k~~~~~~~~~~l~hGnam~lP~-------~~~  113 (231)
T TIGR02752        44 QKGKKALDVCCGTADWAIALAEAVGKEG---EVKGLDFSENMLSVGKQKVKDAKLSNVELVHGNAMELPY-------DDN  113 (231)
T ss_pred             HHCCHHHHHCCCCHHHHHHHHHHHCCCC---CEEEEHHHHHHHHHHHHHHHHHHHHHEEEECCCHHCCCC-------CCC
T ss_conf             4041211210373378889888617777---167400358899999988875432002223052001787-------766


Q ss_pred             CCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHCCEEE
Q ss_conf             8748975320211022210157889899988987641148774699993059998999999986258469
Q gi|254780313|r  135 NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI  204 (227)
Q Consensus       135 ~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~~~F~~V~  204 (227)
                      .||-|+---     |.+.+..+      ..+|.-..++.+|||..||=--.-+....+....-.+|+.|-
T Consensus       114 ~fdyvtiGf-----GlrnvPdy------~~vl~em~rv~kPGG~~~C~~tsqP~~~~~~q~y~~yf~~~m  172 (231)
T TIGR02752       114 SFDYVTIGF-----GLRNVPDY------MTVLKEMARVVKPGGKVVCLETSQPTLPGFKQLYFFYFKYIM  172 (231)
T ss_pred             CCCEEEECC-----CCCCHHHH------HHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHH
T ss_conf             612577525-----51230269------999999888627997179862577625799999999999998


No 88 
>pfam01795 Methyltransf_5 MraW methylase family. Members of this family are probably SAM dependent methyltransferases based on Escherichia coli mraW. This family appears to be related to pfam01596.
Probab=97.45  E-value=0.011  Score=37.31  Aligned_cols=84  Identities=20%  Similarity=0.250  Sum_probs=57.9

Q ss_pred             HHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC---------CC-CCCCEEEECCCCHHHH
Q ss_conf             9999864583137967888504553068999997068788327864112133---------34-6981783011220799
Q gi|254780313|r   55 LLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM---------EP-ILGVKFFKFDFLDLDS  124 (227)
Q Consensus        55 L~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~---------~~-i~gv~~~~gDi~~~~~  124 (227)
                      |.|+.+-... +|+..+||.-.+-||-|+.+.+..++   .|+|+|+|.-+.         .+ -..+.+++++|.+...
T Consensus         9 l~Evi~~L~~-~~~g~yvD~T~G~GGHS~~iL~~~~~---~~~li~iDrD~~ai~~a~~~l~~~~~r~~~~~~nF~~l~~   84 (310)
T pfam01795         9 LQEVVELLNI-KPDGIYIDCTLGGGGHSEAILEQLPE---EGRLIGIDRDPQAIANAKERLKPFKGRVTLIHSNFANLFA   84 (310)
T ss_pred             HHHHHHHCCC-CCCCEEEEECCCCCHHHHHHHHHCCC---CCEEEEEECCHHHHHHHHHHCCCCCCCEEEEECCHHHHHH
T ss_conf             9999972683-89999999588971999999984899---9979999898999999998530258858999253757999


Q ss_pred             HHHHHHHCCCCCCEEEECCC
Q ss_conf             99999731388748975320
Q gi|254780313|r  125 WEFIRQAIGGNPDLVLSDMA  144 (227)
Q Consensus       125 ~~~i~~~l~~~~DlVlSDma  144 (227)
                      .  +...--.++|-|+-|.+
T Consensus        85 ~--l~~~~~~~vdGil~DLG  102 (310)
T pfam01795        85 Y--LKELGVGKVDGILFDLG  102 (310)
T ss_pred             H--HHHCCCCCCCEEEEECC
T ss_conf             9--98759876678999644


No 89 
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.45  E-value=0.0039  Score=40.11  Aligned_cols=137  Identities=17%  Similarity=0.171  Sum_probs=83.3

Q ss_pred             CEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC------CC---------CCCCEEEECCCCHHHHHHHHHHHCC
Q ss_conf             67888504553068999997068788327864112133------34---------6981783011220799999997313
Q gi|254780313|r   69 RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM------EP---------ILGVKFFKFDFLDLDSWEFIRQAIG  133 (227)
Q Consensus        69 ~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~------~~---------i~gv~~~~gDi~~~~~~~~i~~~l~  133 (227)
                      ..||=+|-+.||++..+.+....    -+++.|||.+.      +.         -+.+..+.+|     ..+.+.+.- 
T Consensus        78 k~VLiiGgGdG~tlRevlkh~~v----e~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~D-----g~~~v~~~~-  147 (282)
T COG0421          78 KRVLIIGGGDGGTLREVLKHLPV----ERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDD-----GVEFLRDCE-  147 (282)
T ss_pred             CEEEEECCCCCHHHHHHHHCCCC----CEEEEEECCHHHHHHHHHHCCCCCCCCCCCCEEEEECC-----HHHHHHHCC-
T ss_conf             76999889766999999836884----33799970889999999866675433579736899610-----799987488-


Q ss_pred             CCCCEEEECCCHHHCCCC-CCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE---E-ECCCCHHHHHHHHHHHCCEEEEE-C
Q ss_conf             887489753202110222-1015788989998898764114877469999---3-05999899999998625846997-6
Q gi|254780313|r  134 GNPDLVLSDMAYPTIGHR-KIDHLRTMSLCEAATFFALEMLNIGGDFLVK---T-FQGGTTNDILCLLKKHFQKVIHV-K  207 (227)
Q Consensus       134 ~~~DlVlSDmapn~SG~~-~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K---~-F~G~~~~~l~~~l~~~F~~V~~~-K  207 (227)
                      .++|||+.|.-... |.. .....       .-..-+.+.|+++|.||+-   . ++.+........++..|..+..+ .
T Consensus       148 ~~fDvIi~D~tdp~-gp~~~Lft~-------eFy~~~~~~L~~~Gi~v~q~~~~~~~~~~~~~~~~~~~~vf~~~~~~~~  219 (282)
T COG0421         148 EKFDVIIVDSTDPV-GPAEALFTE-------EFYEGCRRALKEDGIFVAQAGSPFLQDEEIALAYRNVSRVFSIVPPYVA  219 (282)
T ss_pred             CCCCEEEECCCCCC-CCCCCCCCH-------HHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEE
T ss_conf             76778998588998-843023779-------9999999862889689994478432407899999877753435655210


Q ss_pred             CCCCCCCCCEEEEEEC
Q ss_conf             8665755824989830
Q gi|254780313|r  208 PVASRAESVEMFLLAK  223 (227)
Q Consensus       208 P~aSR~~S~E~Ylv~~  223 (227)
                      |.-+=....+.|+++-
T Consensus       220 ~ipt~~~g~~~f~~~s  235 (282)
T COG0421         220 PIPTYPSGFWGFIVAS  235 (282)
T ss_pred             CCCEECCCCEEEEEEE
T ss_conf             2412227815899961


No 90 
>pfam01170 UPF0020 Putative RNA methylase family UPF0020. This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains.
Probab=97.41  E-value=0.0011  Score=43.51  Aligned_cols=109  Identities=22%  Similarity=0.205  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC-----------CCCC-CCEEE
Q ss_conf             47999999999864583137967888504553068999997068788327864112133-----------3469-81783
Q gi|254780313|r   48 RARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM-----------EPIL-GVKFF  115 (227)
Q Consensus        48 rsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~-----------~~i~-gv~~~  115 (227)
                      +..=|.-|+.+-.    .++++.|+|.+|+-|+..-=|+. .+.   +..++|+|+.+-           ..+. .+.+.
T Consensus        13 ~~~lAa~l~~la~----~~~g~~vlDP~CGSGtilIEAa~-~~~---~~~~~G~Did~~~v~~A~~N~~~~g~~~~i~~~   84 (171)
T pfam01170        13 KATLARAMVNLAG----WKPGDPLLDPFCGSGTILIEAAL-MGA---NVALYGSDIDRRMVRGARINAEAAGVGDKIEFV   84 (171)
T ss_pred             CHHHHHHHHHHHC----CCCCCEEEECCCCCCHHHHHHHH-HHC---CCCCEEEECCHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf             8999999999858----99999788689987899999999-613---589536758799999999999982899846999


Q ss_pred             ECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             01122079999999731388748975320211022210157889899988987641148
Q gi|254780313|r  116 KFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLN  174 (227)
Q Consensus       116 ~gDi~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk  174 (227)
                      ++|+++..       ...+.+|+|++|.  . -|.+.-++....+|....+..+.++++
T Consensus        85 ~~D~~~l~-------~~~~~~d~Iv~nP--P-YG~r~~~~~~~~~ly~~~~~~~~~~~~  133 (171)
T pfam01170        85 QADAADLP-------LLNGSVDTIVTDP--P-YGIRIGSKGALEKLYPAFLDEAKRVLR  133 (171)
T ss_pred             ECCHHHCC-------CCCCCCEEEEECC--C-CCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf             76665387-------9878831899889--8-201136545699999999999998689


No 91 
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase; InterPro: IPR010251   Chlorophyll and bacteriochlorophyll are essential photosynthetic pigments involved in oxygenic and non-oxygenic photosythesis respectively. They are both synthesised from protoporphyrin IX in complex pathways which share many common steps. The second committed step in both pathways is the methylation of magnesium protoporphyrin IX, catalysed by magnesium protoporphyrin O-methyltransferase with S-adenosyl methionine (SAM) as the methyl donor , , .Sequence alignments suggest that the protein contains the characteristic seven-stranded beta-sheet fold found in other SAM-dependent methyltransferases.   This entry represents magnesium protoporphyrin O-methyltransferase from cyanobacteria and plants, where it is known as ChlM, and from other photosynthetic bacteria, where it is known as BchM.; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process.
Probab=97.31  E-value=0.00046  Score=45.90  Aligned_cols=86  Identities=30%  Similarity=0.336  Sum_probs=57.8

Q ss_pred             HHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC------------C
Q ss_conf             9999881844799999999986458313796788850455306899999706878832786411213------------3
Q gi|254780313|r   39 VQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD------------M  106 (227)
Q Consensus        39 ~~~Ak~~gyrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~------------~  106 (227)
                      +++-=++| |.--.=|+++.-.+-+.+ .|.+|||=||+-|=.|.-.++      .+..|.||||.+            -
T Consensus        28 ~r~~vR~G-r~~~~~~~l~wL~~d~~l-~G~~vlDAGCGtGllsi~LAk------~GA~V~A~DIS~~mv~~A~~r~~~~   99 (224)
T TIGR02021        28 VRQTVREG-RAAMREKLLEWLPKDRSL-KGKKVLDAGCGTGLLSIELAK------RGAIVKAVDISEQMVELARERAEKE   99 (224)
T ss_pred             HHHHHHHH-HHHHHHHHHHHCCCCCCC-CCCEEEECCCCCCHHHHHHHH------CCCEEEEEHHHHHHHHHHHHHCCCC
T ss_conf             89999976-999999999854678898-767777558893154498884------7986866237689999998621002


Q ss_pred             CCCCC-CEEEECCCCHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             34698-178301122079999999731388748975
Q gi|254780313|r  107 EPILG-VKFFKFDFLDLDSWEFIRQAIGGNPDLVLS  141 (227)
Q Consensus       107 ~~i~g-v~~~~gDi~~~~~~~~i~~~l~~~~DlVlS  141 (227)
                      .+-.| +.|-.+|+...         ..|+||.|+|
T Consensus       100 ~~~~nl~~FeV~Dl~s~---------~~G~fD~VV~  126 (224)
T TIGR02021       100 DEAGNLVEFEVNDLESL---------ELGKFDAVVA  126 (224)
T ss_pred             CCCCCCCEEEECCHHHH---------CCCCCCEEEE
T ss_conf             10167003545304441---------3898555675


No 92 
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=97.29  E-value=0.0009  Score=44.10  Aligned_cols=93  Identities=22%  Similarity=0.245  Sum_probs=64.2

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------C--CCCCCCEEEECCCCHHHHHHHHHHHCC
Q ss_conf             13796788850455306899999706878832786411213---------3--346981783011220799999997313
Q gi|254780313|r   65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------M--EPILGVKFFKFDFLDLDSWEFIRQAIG  133 (227)
Q Consensus        65 ~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~--~~i~gv~~~~gDi~~~~~~~~i~~~l~  133 (227)
                      ++|+++||++||+.|--+-+++++++      +|++||..+         +  ..+.||.++.||-.+--.       -.
T Consensus        76 l~~~~~VLeIGtGsGY~tAlLa~l~~------~V~siE~~~~l~~~a~~~l~~~~~~nv~~~~gdg~~g~~-------~~  142 (213)
T PRK00312         76 LKPGDRVLEIGTGSGYQAAVLAHLVE------RVFSVERIKTLQWQAKRRLKQLGLHNVSVRHGDGWKGWP-------AY  142 (213)
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHCC------CEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC-------CC
T ss_conf             68997599965986099999998629------289994289999999999998499876999688766787-------66


Q ss_pred             CCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCC
Q ss_conf             887489753202110222101578898999889876411487746999930599
Q gi|254780313|r  134 GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGG  187 (227)
Q Consensus       134 ~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~  187 (227)
                      ++||.|+..+|...     +-+            --...|++||.+|+=+=.+.
T Consensus       143 ~pfD~Iii~~a~~~-----~P~------------~l~~qL~~gGrLV~Pig~~~  179 (213)
T PRK00312        143 APFDRILVTAAAPE-----IPR------------ALLDQLAEGGILVAPIGPGE  179 (213)
T ss_pred             CCCCEEEEEECCHH-----HHH------------HHHHHCCCCCEEEEEECCCC
T ss_conf             97248999843412-----259------------99984532979999980499


No 93 
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=97.27  E-value=0.012  Score=37.12  Aligned_cols=108  Identities=22%  Similarity=0.274  Sum_probs=72.4

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC------------CCCCCCCEEEECCCCHHHHHHHHHHHC
Q ss_conf             13796788850455306899999706878832786411213------------334698178301122079999999731
Q gi|254780313|r   65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD------------MEPILGVKFFKFDFLDLDSWEFIRQAI  132 (227)
Q Consensus        65 ~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~------------~~~i~gv~~~~gDi~~~~~~~~i~~~l  132 (227)
                      ++||+.++|+||+-|+-+--++ ++++   .++|+|||-.+            .. ++|+..+.||-  +++..    .+
T Consensus        32 ~~~g~~l~DIGaGtGsi~iE~a-~~~p---~~~v~AIe~~~~a~~~~~~N~~~fg-~~n~~vv~g~A--p~~L~----~~  100 (187)
T COG2242          32 PRPGDRLWDIGAGTGSITIEWA-LAGP---SGRVIAIERDEEALELIERNAARFG-VDNLEVVEGDA--PEALP----DL  100 (187)
T ss_pred             CCCCCEEEEECCCCCHHHHHHH-HHCC---CCEEEEEECCHHHHHHHHHHHHHHC-CCCEEEEECCC--HHHHC----CC
T ss_conf             8999989995788668999999-7398---8559999258889999999999849-99679995464--57636----99


Q ss_pred             CCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHH
Q ss_conf             3887489753202110222101578898999889876411487746999930599989999999862
Q gi|254780313|r  133 GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH  199 (227)
Q Consensus       133 ~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~~~  199 (227)
                      . .+|.|.=-+      -..+         ...|+.+...|++||.+|+-.-.=+.....+..++..
T Consensus       101 ~-~~daiFIGG------g~~i---------~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~  151 (187)
T COG2242         101 P-SPDAIFIGG------GGNI---------EEILEAAWERLKPGGRLVANAITLETLAKALEALEQL  151 (187)
T ss_pred             C-CCCEEEECC------CCCH---------HHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHC
T ss_conf             9-999999879------8777---------8999999997186876999860088899999999972


No 94 
>pfam03848 TehB Tellurite resistance protein TehB.
Probab=97.20  E-value=0.0032  Score=40.65  Aligned_cols=120  Identities=22%  Similarity=0.219  Sum_probs=71.4

Q ss_pred             CCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC-----------CCCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf             83137967888504553068999997068788327864112133-----------3469817830112207999999973
Q gi|254780313|r   63 QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM-----------EPILGVKFFKFDFLDLDSWEFIRQA  131 (227)
Q Consensus        63 ~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~-----------~~i~gv~~~~gDi~~~~~~~~i~~~  131 (227)
                      +.++| .++|||||+.|-=+-|.++.      +-.|.|||+.+.           +.+ .+++.+-||.+..        
T Consensus        27 ~~i~p-gk~LDlgcG~GRNslyLa~~------G~~VtavD~n~~aL~~l~~ia~~e~l-~i~~~~~Din~~~--------   90 (192)
T pfam03848        27 KTVKP-GKALDLGCGQGRNSLFLSLL------GYDVTAVDHNENSIANLQDIKEKENL-DIPTALYDINSAS--------   90 (192)
T ss_pred             HHCCC-CCEEEECCCCCHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHHCCC-CCEEEEECCCCCC--------
T ss_conf             63799-74666047897318999868------99179997999999999999997099-7526873155568--------


Q ss_pred             CCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEC-CCC------HH-HH-HHHHHHHCCE
Q ss_conf             138874897532021102221015788989998898764114877469999305-999------89-99-9999862584
Q gi|254780313|r  132 IGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ-GGT------TN-DI-LCLLKKHFQK  202 (227)
Q Consensus       132 l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~-G~~------~~-~l-~~~l~~~F~~  202 (227)
                      +.+.+|+|+|-...     ...+..+.-    ..+.=.....+|||..++-.+. ..+      +. .| -..|+.+|+.
T Consensus        91 ~~e~YD~IisTVvf-----mFL~~~~ip----~iI~~mq~~T~pGGynlIv~am~t~d~pc~~~f~ftfk~gEL~~yy~~  161 (192)
T pfam03848        91 IDENYDFILSTVVL-----MFLQAERIP----AIIANMQEHTNVGGYNLIVAAMSTADYPCTVPFSFTFKEGELKRYYQD  161 (192)
T ss_pred             CCCCCCEEEEEEEE-----EECCHHHHH----HHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCC
T ss_conf             76776879888877-----731867877----999999985289988999976145537899898877880189997389


Q ss_pred             EEEEC
Q ss_conf             69976
Q gi|254780313|r  203 VIHVK  207 (227)
Q Consensus       203 V~~~K  207 (227)
                      -.++|
T Consensus       162 Weilk  166 (192)
T pfam03848       162 WELLK  166 (192)
T ss_pred             CEEEE
T ss_conf             87998


No 95 
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.15  E-value=0.0084  Score=38.01  Aligned_cols=117  Identities=25%  Similarity=0.369  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CCCCC-CCEEEECC
Q ss_conf             799999999986458313796788850455306899999706878832786411213---------33469-81783011
Q gi|254780313|r   49 ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------MEPIL-GVKFFKFD  118 (227)
Q Consensus        49 sRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~~i~-gv~~~~gD  118 (227)
                      +=||+=|..+.-..+|  .|.+|+||||+-|-.+ +++...|+    .+|+|||+.+         .+.+. +|.|+.+|
T Consensus        29 ~~Aa~il~~a~~~g~l--~g~~V~DlG~GTG~La-~ga~~lGa----~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~d  101 (198)
T COG2263          29 PLAAYILWVAYLRGDL--EGKTVLDLGAGTGILA-IGAALLGA----SRVLAVDIDPEALEIARANAEELLGDVEFVVAD  101 (198)
T ss_pred             HHHHHHHHHHHHCCCC--CCCEEEECCCCCCHHH-HHHHHCCC----CEEEEEECCHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf             8999999999873884--7888888278847889-99986297----179999369899999998888608846999821


Q ss_pred             CCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHH
Q ss_conf             220799999997313887489753202110222101578898999889876411487746999930599989999999
Q gi|254780313|r  119 FLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL  196 (227)
Q Consensus       119 i~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l  196 (227)
                      +.+.          .+++|+|+-+  |.. |.+ .-| .-..-.+.||+++         -|+....-....+|+...
T Consensus       102 v~~~----------~~~~dtvimN--PPF-G~~-~rh-aDr~Fl~~Ale~s---------~vVYsiH~a~~~~f~~~~  155 (198)
T COG2263         102 VSDF----------RGKFDTVIMN--PPF-GSQ-RRH-ADRPFLLKALEIS---------DVVYSIHKAGSRDFVEKF  155 (198)
T ss_pred             HHHC----------CCCCCEEEEC--CCC-CCC-CCC-CCHHHHHHHHHHH---------HEEEEEECCCCHHHHHHH
T ss_conf             0114----------7766669978--997-322-136-8889999999740---------147874016607999999


No 96 
>pfam06016 Reovirus_L2 Reovirus core-spike protein lambda-2 (L2). This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences. The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts.
Probab=97.13  E-value=0.0062  Score=38.86  Aligned_cols=142  Identities=23%  Similarity=0.281  Sum_probs=95.3

Q ss_pred             HCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCC----CCCCCC------CCEEEECCCCHHHHHHHHHH
Q ss_conf             45831379678885045530689999970687883278641121----333469------81783011220799999997
Q gi|254780313|r   61 KHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL----DMEPIL------GVKFFKFDFLDLDSWEFIRQ  130 (227)
Q Consensus        61 kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~----~~~~i~------gv~~~~gDi~~~~~~~~i~~  130 (227)
                      -..+++.++++.=|||+-|.=.          .....||. |++    |--|++      |-....|-|.|.+     +.
T Consensus       501 ~~~~l~~~~SmaYlGAS~~Ha~----------adqP~Ii~-pl~~GsipGvp~Pssi~QfGydVa~Gsi~Dl~-----~p  564 (1289)
T pfam06016       501 DHRVLPDSFSMAYLGASSTHAD----------ADQPLIIE-PLLSGSIPGVPIPSSVKQFGYDVANGSICDLE-----LP  564 (1289)
T ss_pred             CCCCCCCCCEEEEEECCCCCCC----------CCCCEEEH-HHHCCCCCCCCCCHHHHHCCCEECCCEEEEEE-----CC
T ss_conf             8702578741799603555678----------89871415-76659988876750465506010365666321-----26


Q ss_pred             HCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE-ECCCCH-HHHHHHHHHHCCEEEEECC
Q ss_conf             31388748975320211022210157889899988987641148774699993-059998-9999999862584699768
Q gi|254780313|r  131 AIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT-FQGGTT-NDILCLLKKHFQKVIHVKP  208 (227)
Q Consensus       131 ~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~-F~G~~~-~~l~~~l~~~F~~V~~~KP  208 (227)
                      ...|.|-+|-||.---..|.-+  -..+..++.+.|..|...--+||.+|+|+ |-...+ ..+......+|...+++||
T Consensus       565 ~pTGtf~fVYsDvDQVedg~~D--l~assr~~~s~L~~~m~mTtaGGs~V~KvNFPT~~~W~~if~~~ap~~tslhl~KP  642 (1289)
T pfam06016       565 LPTGTFFFVYSDVDQVEDGGSD--LDASSRAACSQLDMAMKMTTAGGSLVVKVNFPTRAVWTQIFSTIAPYATSLHLMKP  642 (1289)
T ss_pred             CCCCCEEEEEECHHHHHCCCCC--CCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECC
T ss_conf             8876269998233566517877--40355789999877885403784489995588489999999763555114556420


Q ss_pred             CCCCCCCCEEEEEE
Q ss_conf             66575582498983
Q gi|254780313|r  209 VASRAESVEMFLLA  222 (227)
Q Consensus       209 ~aSR~~S~E~Ylv~  222 (227)
                      --.  .|.|+|+|-
T Consensus       643 ~v~--Nn~Evf~vf  654 (1289)
T pfam06016       643 LVV--NNVELFLLF  654 (1289)
T ss_pred             EEE--CCEEEEEEE
T ss_conf             344--553799998


No 97 
>PRK00050 mraW S-adenosyl-methyltransferase MraW; Provisional
Probab=97.13  E-value=0.025  Score=34.99  Aligned_cols=82  Identities=23%  Similarity=0.288  Sum_probs=57.1

Q ss_pred             HHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC---------CC-CCCCEEEECCCCHHHH
Q ss_conf             9999864583137967888504553068999997068788327864112133---------34-6981783011220799
Q gi|254780313|r   55 LLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM---------EP-ILGVKFFKFDFLDLDS  124 (227)
Q Consensus        55 L~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~---------~~-i~gv~~~~gDi~~~~~  124 (227)
                      |.|+.+-... .|+..+||.-.+-||-|+.+.+..++   +|+|+|+|..+-         ++ -..+.+++++|-+...
T Consensus        12 l~Evl~~L~~-~~~g~yvD~T~G~GGHS~~iL~~l~~---~~~li~iDrD~~ai~~a~~~l~~~~~r~~~~~~nF~~l~~   87 (309)
T PRK00050         12 LDEVVDGLAI-KPDGIYVDGTFGRGGHSRAILSQLGP---GGRLIAIDRDPQAIAAAKERLDPFGGRFTIVHGNFSDLAE   87 (309)
T ss_pred             HHHHHHHCCC-CCCCEEEEECCCCCHHHHHHHHHCCC---CCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCHHHHHH
T ss_conf             8999983682-89999999388983999999972799---9889999898899999999865258828999277988999


Q ss_pred             HHHHHHHCCCCCCEEEECCC
Q ss_conf             99999731388748975320
Q gi|254780313|r  125 WEFIRQAIGGNPDLVLSDMA  144 (227)
Q Consensus       125 ~~~i~~~l~~~~DlVlSDma  144 (227)
                      .  + ... +++|-|+-|.+
T Consensus        88 ~--l-~~~-~~vdgil~DLG  103 (309)
T PRK00050         88 Y--L-AEV-GKVDGILLDLG  103 (309)
T ss_pred             H--H-HHC-CCCCEEEEEEE
T ss_conf             9--9-863-88778999722


No 98 
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.12  E-value=0.026  Score=34.93  Aligned_cols=84  Identities=18%  Similarity=0.093  Sum_probs=56.4

Q ss_pred             HHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CCC-CCCCEEEECCCCHHHH
Q ss_conf             999986458313796788850455306899999706878832786411213---------334-6981783011220799
Q gi|254780313|r   55 LLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------MEP-ILGVKFFKFDFLDLDS  124 (227)
Q Consensus        55 L~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~~-i~gv~~~~gDi~~~~~  124 (227)
                      |.|..+-+.+ +|+...||.-.+-||-|+.+.+..+.   .++++|+|..|         ..+ -..++++++.|-+...
T Consensus        12 l~E~i~~L~~-~~~giyiD~TlG~GGHS~~iL~~l~~---~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l~~   87 (314)
T COG0275          12 LNEVVELLAP-KPDGIYIDGTLGAGGHSRAILEKLPD---LGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANLAE   87 (314)
T ss_pred             HHHHHHHCCC-CCCCEEEEECCCCCHHHHHHHHHCCC---CCEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHH
T ss_conf             9999985264-89947998237774768999985898---8708997689899999999853037848999576878998


Q ss_pred             HHHHHHHCCCCCCEEEECCC
Q ss_conf             99999731388748975320
Q gi|254780313|r  125 WEFIRQAIGGNPDLVLSDMA  144 (227)
Q Consensus       125 ~~~i~~~l~~~~DlVlSDma  144 (227)
                      ...  ..-.+++|=|+-|.+
T Consensus        88 ~l~--~~~i~~vDGiL~DLG  105 (314)
T COG0275          88 ALK--ELGIGKVDGILLDLG  105 (314)
T ss_pred             HHH--HCCCCCEEEEEEECC
T ss_conf             887--638872227999536


No 99 
>PRK06202 hypothetical protein; Provisional
Probab=97.10  E-value=0.0055  Score=39.16  Aligned_cols=67  Identities=30%  Similarity=0.242  Sum_probs=45.0

Q ss_pred             CCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC--------CCCCCCE--EEECCCCHHHHHHHHHHHCCCCCC
Q ss_conf             967888504553068999997068788327864112133--------3469817--830112207999999973138874
Q gi|254780313|r   68 NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM--------EPILGVK--FFKFDFLDLDSWEFIRQAIGGNPD  137 (227)
Q Consensus        68 g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~--------~~i~gv~--~~~gDi~~~~~~~~i~~~l~~~~D  137 (227)
                      --+|||+||+.|.-+..+++.....|....|+|||+.|-        ..-+++.  +...|...         ..+..+|
T Consensus        62 ~~~VLDlGcG~Gdl~~~lar~a~~~g~~l~v~GiD~~~~ai~~Ar~~a~~~~~~~~~~~~d~l~---------~~~~~~D  132 (233)
T PRK06202         62 PLTVLDLGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAIRFARANARRRGVTFRFAVSDELV---------AEGERFD  132 (233)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCCCEEEEEHHHHC---------CCCCCCC
T ss_conf             7289983478757999999999755996389997798899999987340369836997343202---------4578875


Q ss_pred             EEEECC
Q ss_conf             897532
Q gi|254780313|r  138 LVLSDM  143 (227)
Q Consensus       138 lVlSDm  143 (227)
                      +|+|-.
T Consensus       133 vV~~sl  138 (233)
T PRK06202        133 VVYSNH  138 (233)
T ss_pred             EEEHHH
T ss_conf             760324


No 100
>KOG1499 consensus
Probab=97.08  E-value=0.0016  Score=42.60  Aligned_cols=105  Identities=22%  Similarity=0.328  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCC----------CCC-CEEEECCCC
Q ss_conf             999999986458313796788850455306899999706878832786411213334----------698-178301122
Q gi|254780313|r   52 AYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP----------ILG-VKFFKFDFL  120 (227)
Q Consensus        52 afKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~----------i~g-v~~~~gDi~  120 (227)
                      ||--.-++.++ + =.+.+|||.||+-|=-|+.+++--     .-+|+|||-..|..          ..+ +++++|.+.
T Consensus        47 aYr~~i~~n~~-l-f~dK~VlDVGcGtGILS~F~akAG-----A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvE  119 (346)
T KOG1499          47 AYRNAILQNKH-L-FKDKTVLDVGCGTGILSMFAAKAG-----ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVE  119 (346)
T ss_pred             HHHHHHHCCHH-H-CCCCEEEECCCCCCHHHHHHHHHC-----CCEEEEEECHHHHHHHHHHHHHCCCCCEEEEEECCEE
T ss_conf             87887751643-3-079789975788128899988737-----5339999626899999999985686605999503057


Q ss_pred             HHHHHHHHHHHCCCCCCEEEEC-CCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf             0799999997313887489753-2021102221015788989998898764114877469
Q gi|254780313|r  121 DLDSWEFIRQAIGGNPDLVLSD-MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF  179 (227)
Q Consensus       121 ~~~~~~~i~~~l~~~~DlVlSD-mapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~f  179 (227)
                      +.+..       -.++|+|+|. |     |..    .....+...+|..=.++|++||..
T Consensus       120 di~LP-------~eKVDiIvSEWM-----Gy~----Ll~EsMldsVl~ARdkwL~~~G~i  163 (346)
T KOG1499         120 DIELP-------VEKVDIIVSEWM-----GYF----LLYESMLDSVLYARDKWLKEGGLI  163 (346)
T ss_pred             EEECC-------CCCEEEEEEHHH-----HHH----HHHHHHHHHHHHHHHHCCCCCCEE
T ss_conf             87647-------554029963012-----478----777656664553333004779557


No 101
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.06  E-value=0.0045  Score=39.70  Aligned_cols=120  Identities=18%  Similarity=0.236  Sum_probs=78.3

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEEC--------CCCC-CCCCCCEEEECCCCHHHHHHHHHHHCCCC
Q ss_conf             13796788850455306899999706878832786411--------2133-34698178301122079999999731388
Q gi|254780313|r   65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID--------ILDM-EPILGVKFFKFDFLDLDSWEFIRQAIGGN  135 (227)
Q Consensus        65 ~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVD--------l~~~-~~i~gv~~~~gDi~~~~~~~~i~~~l~~~  135 (227)
                      +++|..||=||||-|--.-.+++.++    .|+|.||.        |+++ +.-+|+.=+-+|...++....+    -..
T Consensus        74 i~~g~~VLYLGAasGTTvSHVSDIv~----~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~----Ve~  145 (231)
T COG1889          74 IKEGSKVLYLGAASGTTVSHVSDIVG----EGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHL----VEK  145 (231)
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHCCC----CCCEEEEEECCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHH----CCC
T ss_conf             69998789950367985767776047----8708999964446999999987478740020136883776531----245


Q ss_pred             CCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC--EEEEEEEC---CCCHHH-----HHHHHHHHCCEEEE
Q ss_conf             748975320211022210157889899988987641148774--69999305---999899-----99999862584699
Q gi|254780313|r  136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG--DFLVKTFQ---GGTTND-----ILCLLKKHFQKVIH  205 (227)
Q Consensus       136 ~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG--~fV~K~F~---G~~~~~-----l~~~l~~~F~~V~~  205 (227)
                      +|+|..|.|.       -||+..      +..=|.-+|++||  -.++|.-.   ..+-.+     +.++....|+-...
T Consensus       146 VDviy~DVAQ-------p~Qa~I------~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e~  212 (231)
T COG1889         146 VDVIYQDVAQ-------PNQAEI------LADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEILEV  212 (231)
T ss_pred             CCEEEEECCC-------CHHHHH------HHHHHHHHCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEE
T ss_conf             4389983688-------107899------998899732169739999985123045898999999999998569504677


No 102
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.02  E-value=0.0011  Score=43.51  Aligned_cols=95  Identities=20%  Similarity=0.246  Sum_probs=64.4

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC---------C--CCCC-CEEEECCCCHHHHHHHHHHHC
Q ss_conf             137967888504553068999997068788327864112133---------3--4698-178301122079999999731
Q gi|254780313|r   65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM---------E--PILG-VKFFKFDFLDLDSWEFIRQAI  132 (227)
Q Consensus        65 ~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~---------~--~i~g-v~~~~gDi~~~~~~~~i~~~l  132 (227)
                      ++|+++|||+||+.|--+-+++++++.   .|+|++||+.+-         +  .+.| +.+..||...--     .  -
T Consensus        70 ~~~~~~VLeIGtGsGY~tAlla~l~~~---~g~V~siE~~~~L~~~A~~~l~~l~~~n~v~v~~gdg~~G~-----~--~  139 (205)
T PRK13944         70 PRPGMKILEVGTGSGYQAAVCAEAIER---RGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGL-----E--K  139 (205)
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHHCC---CCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCC-----C--C
T ss_conf             899998999789851999999998374---77179995369999999999998598633067976556577-----4--3


Q ss_pred             CCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECC
Q ss_conf             388748975320211022210157889899988987641148774699993059
Q gi|254780313|r  133 GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG  186 (227)
Q Consensus       133 ~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G  186 (227)
                      .++||.|+..+|+..     +.+            --...|++||.+|+=+=++
T Consensus       140 ~apfD~Iiv~aa~~~-----iP~------------~l~~QL~~gGrLV~Pvg~~  176 (205)
T PRK13944        140 HAPFDAIIVTAAAST-----IPS------------ALVRQLKDGGVLVIPVEEG  176 (205)
T ss_pred             CCCCCEEEEEEECCC-----CCH------------HHHHHCCCCCEEEEEECCC
T ss_conf             498048999850776-----899------------9998548797999998789


No 103
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=97.01  E-value=0.0068  Score=38.57  Aligned_cols=89  Identities=21%  Similarity=0.226  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC-----------CCCCCCCEEEEC
Q ss_conf             799999999986458313796788850455306899999706878832786411213-----------334698178301
Q gi|254780313|r   49 ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-----------MEPILGVKFFKF  117 (227)
Q Consensus        49 sRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~-----------~~~i~gv~~~~g  117 (227)
                      ...+-+|.+.-.++-=..+...||||-|+=|.++..+++..      ..|+||++.+           ...+.|+.|+.+
T Consensus       215 ~~~~~~L~~~~~~~~~~~~~~~vlDlycG~G~~sl~lA~~~------~~V~gvE~~~~av~~A~~na~~ngi~nv~f~~~  288 (375)
T PRK03522        215 PAVAAQLYATARDWVRELPPKSMWDLFCGVGGFGLHCATPD------MQLTGIEISAEAIACAKQSAAELGLTNVQFQAL  288 (375)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHCC------CEEEEEEECHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf             99999999999998631589789996578538889876417------889999845999999999999869987699973


Q ss_pred             CCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCC
Q ss_conf             1220799999997313887489753202110222
Q gi|254780313|r  118 DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHR  151 (227)
Q Consensus       118 Di~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~  151 (227)
                      |..+.      .......+|+|+-|  |.-+|..
T Consensus       289 d~~~~------~~~~~~~~d~vvvD--PPR~Gl~  314 (375)
T PRK03522        289 DSTQF------ATAQGEVPELVLVN--PPRRGIG  314 (375)
T ss_pred             CHHHH------HHHCCCCCCEEEEC--CCCCCCH
T ss_conf             77888------76345689789989--9977751


No 104
>PRK06922 hypothetical protein; Provisional
Probab=97.00  E-value=0.0069  Score=38.53  Aligned_cols=103  Identities=20%  Similarity=0.312  Sum_probs=61.9

Q ss_pred             CCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC--CCCC--------CCCEEEECCCCHHHHHHHHHHHCCCC
Q ss_conf             3796788850455306899999706878832786411213--3346--------98178301122079999999731388
Q gi|254780313|r   66 QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD--MEPI--------LGVKFFKFDFLDLDSWEFIRQAIGGN  135 (227)
Q Consensus        66 k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~--~~~i--------~gv~~~~gDi~~~~~~~~i~~~l~~~  135 (227)
                      -.|.++||+|++-|    |..+.+...-.+..|+|+||..  ++.+        ..=..++||..+...     .+-.+.
T Consensus       419 i~G~~ivdiG~GGG----VMldli~E~~p~~~i~GIDiS~NVIe~L~kkK~~e~ksW~V~~gDAL~l~d-----~f~~eS  489 (679)
T PRK06922        419 IKGDTIVDVGAGGG----VMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSS-----SFEKES  489 (679)
T ss_pred             CCCCEEEEECCCCC----HHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEECCCCCCCHH-----HCCCCC
T ss_conf             14767998669962----148766765899861466660889999988777548984232143036154-----347566


Q ss_pred             CCEEEECCCH-------HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf             7489753202-------1102221015788989998898764114877469999
Q gi|254780313|r  136 PDLVLSDMAY-------PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK  182 (227)
Q Consensus       136 ~DlVlSDmap-------n~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K  182 (227)
                      +|.|++---.       .+-|.+.     .-+....+|.-|..+|+|||-.++.
T Consensus       490 vdTiv~sSIlHElfSYie~dGkkf-----N~~vi~~~l~Saf~vLkpGGRiIIR  538 (679)
T PRK06922        490 VDTIVYSSILHELFSYIEYEGKKF-----NHEVIKKGLQSAYEVLKPGGRIIIR  538 (679)
T ss_pred             CCEEEEHHHHHHHHHHCCCCCCCC-----CHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             646874277888886345667134-----7999999999999872888649994


No 105
>pfam02384 N6_Mtase N-6 DNA Methylase. Restriction-modification (R-M) systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The R-M system is a complex containing three polypeptides: M (this family), S (pfam01420), and R. This family consists of N-6 adenine-specific DNA methylase EC:2.1.1.72 from Type I and Type IC restriction systems. These methylases have the same sequence specificity as their corresponding restriction enzymes.
Probab=97.00  E-value=0.0035  Score=40.39  Aligned_cols=141  Identities=18%  Similarity=0.189  Sum_probs=79.2

Q ss_pred             CHHHHHHHHHHHHHHCCCC--CCCCEEEEEECCCCHHHHHHHHHHCC---CCCCEEEEEECCCCC-----------CCCC
Q ss_conf             4479999999998645831--37967888504553068999997068---788327864112133-----------3469
Q gi|254780313|r   47 WRARSAYKLLQINEKHQIL--QSNRRIVDLGSSPGSWSQVAARITGS---NANNTRVVAIDILDM-----------EPIL  110 (227)
Q Consensus        47 yrsRaafKL~eId~kf~l~--k~g~~VlDLGaaPGgWsQva~~~~~~---~~~~~~VigVDl~~~-----------~~i~  110 (227)
                      |--|..=+|+=     .|+  +++.+|+|-+|+-||++--+.+.+..   ......+.|.|+.+-           .-++
T Consensus        29 fTPr~Vv~lmv-----~ll~p~~~~~V~DPacGtGgfLi~a~~~i~~~~~~~~~~~i~G~E~~~~~~~la~mNm~lhgi~  103 (312)
T pfam02384        29 YTPREVSKLIV-----ELLEPKPGESIYDPACGSGGFLIQADKFVKSHDGDTNDISIYGQELNPTTYRLARMNMILHGIE  103 (312)
T ss_pred             CCCHHHHHHHH-----HHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCC
T ss_conf             88789999999-----9828999998821687733789999999998437855655636889989999999999984798


Q ss_pred             --CCEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHH---------------HHHHHHHHHHHHHHCC
Q ss_conf             --81783011220799999997313887489753202110222101578---------------8989998898764114
Q gi|254780313|r  111 --GVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLR---------------TMSLCEAATFFALEML  173 (227)
Q Consensus       111 --gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~---------------~~~L~~~al~~A~~~L  173 (227)
                        ......||-+..+..     .-..+||+|++.  |..++.++.+...               ..++  +-+..++..|
T Consensus       104 ~~~~~i~~gdsl~~~~~-----~~~~kfD~IlsN--PPFg~k~~~~~~~~~~~~~~~~~~~~~~~~e~--~Fiqh~l~~L  174 (312)
T pfam02384       104 YNDFGIRHGDTLLSPKF-----EEDKKFDVVVAN--PPFNQKWDANDNLENDPRFRAYGVPPKSNADF--AFLQHIIYHL  174 (312)
T ss_pred             CCCCCCCCCCCCCCCCC-----CCCCCCCEEEEC--CCCCCCCCCCCCCCCCCCHHCCCCCCCCCHHH--HHHHHHHHHC
T ss_conf             87455214776557676-----654551189837--86466766543210272110368788874429--9999999856


Q ss_pred             CCCCEEEEEE-----ECCCCHHHHHHHHHHHCC
Q ss_conf             8774699993-----059998999999986258
Q gi|254780313|r  174 NIGGDFLVKT-----FQGGTTNDILCLLKKHFQ  201 (227)
Q Consensus       174 k~gG~fV~K~-----F~G~~~~~l~~~l~~~F~  201 (227)
                      ++||...+=+     |.|.....+++.|-..+.
T Consensus       175 k~~GraaiVlp~g~Lf~~~~e~~iR~~lle~~~  207 (312)
T pfam02384       175 SPNGRAAVVLPNGVLFRGGAEGDIRKALVEKDL  207 (312)
T ss_pred             CCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCC
T ss_conf             999769999558231046508899999997597


No 106
>pfam00891 Methyltransf_2 O-methyltransferase. This family includes a range of O-methyltransferases. These enzymes utilize S-adenosyl methionine.
Probab=96.99  E-value=0.034  Score=34.22  Aligned_cols=126  Identities=21%  Similarity=0.235  Sum_probs=73.2

Q ss_pred             CCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC----CCC
Q ss_conf             0899999998818447999999999864583137967888504553068999997068788327864112133----346
Q gi|254780313|r   34 INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM----EPI  109 (227)
Q Consensus        34 ~~D~y~~~Ak~~gyrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~----~~i  109 (227)
                      ..||-....=.++-.+-+..-..++-+.+--+....+|||+|.+.|.++.-+++..+.    -+++-.|+-.+    ..-
T Consensus        68 ~~~p~~~~~F~~aM~~~s~~~~~~~~~~~~d~~~~~~vvDvGGG~G~~~~~i~~~~P~----l~~~v~Dlp~v~~~a~~~  143 (239)
T pfam00891        68 GADPEFNRVFNRAMAAHSRLVMKKILETAFDFSGLSSLVDVGGGTGALAAAIVRAYPH----IKGIVFDLPHVIADAPSA  143 (239)
T ss_pred             HHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHCCC----CEEEEEECHHHHHHCCCC
T ss_conf             5199999999999988888889999987137667876899679818999999998899----838986468778627646


Q ss_pred             CCCEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf             9817830112207999999973138874897532021102221015788989998898764114877469999
Q gi|254780313|r  110 LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK  182 (227)
Q Consensus       110 ~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K  182 (227)
                      +++.++.||++++         ++ .+|+++-=   ++--+|. |     +-|..+|.-+...|+|||.+++=
T Consensus       144 ~rv~~~~gdff~~---------~P-~aD~y~l~---~vLH~w~-d-----~~~~~iL~~~~~al~~~grllI~  197 (239)
T pfam00891       144 DRVEFVGGDFFES---------VP-EADAILLK---WVLHDWS-D-----EDCVKILKRCYEALPPGGKVIVV  197 (239)
T ss_pred             CCEEEECCCCCCC---------CC-CCCEEEEE---HHHCCCC-H-----HHHHHHHHHHHHHCCCCCEEEEE
T ss_conf             8548844877778---------88-85177640---1431599-9-----99999999999977999889999


No 107
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=96.98  E-value=0.0042  Score=39.88  Aligned_cols=105  Identities=21%  Similarity=0.260  Sum_probs=63.3

Q ss_pred             HHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC-----------CCCCCCEEEECCCCHHHHHHH
Q ss_conf             864583137967888504553068999997068788327864112133-----------346981783011220799999
Q gi|254780313|r   59 NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM-----------EPILGVKFFKFDFLDLDSWEF  127 (227)
Q Consensus        59 d~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~-----------~~i~gv~~~~gDi~~~~~~~~  127 (227)
                      -+-...++|| ++|||||+-|-=+-|.+..      +--|.|+|+.+.           +.+ ++....-||.+..    
T Consensus       115 ~~a~~~i~pg-kaLDLGCG~GRNsLyLa~~------GfdVTA~D~N~~sl~~L~~ia~~E~L-~i~~~~yDIN~a~----  182 (289)
T PRK12335        115 LEAAKTVKPG-KALDLGCGQGRNSLYLALL------GFDVTAVDINQASLENLQQIAEKENL-NIRAGSYDINSAS----  182 (289)
T ss_pred             HHHHHHCCCC-CEEEECCCCCCCHHHHHHC------CCCEEEEECCHHHHHHHHHHHHHCCC-CCCCEEECCCCCC----
T ss_conf             9987526887-4666047888227889757------98425886899999999999997198-8772575166666----


Q ss_pred             HHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC-EEEEEEECCCC
Q ss_conf             99731388748975320211022210157889899988987641148774-69999305999
Q gi|254780313|r  128 IRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG-DFLVKTFQGGT  188 (227)
Q Consensus       128 i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG-~fV~K~F~G~~  188 (227)
                          +.+.+|+|+|-.-.     -..+..+.-+    .+.=....-.+|| |+++-..+..+
T Consensus       183 ----l~~~YDfI~STVV~-----mFL~~~~ip~----iI~nMQ~~T~~gGyNlIV~am~T~d  231 (289)
T PRK12335        183 ----LQEEYDFILSTVVL-----MFLNPERIPD----IIKNMQEHTNPGGYNLIVCAMDTED  231 (289)
T ss_pred             ----CCCCCCEEEEEEEE-----EEECHHHHHH----HHHHHHHHCCCCCEEEEEEECCCCC
T ss_conf             ----67776789996788-----6428778699----9999998447998689998714777


No 108
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=96.98  E-value=0.0012  Score=43.35  Aligned_cols=90  Identities=20%  Similarity=0.237  Sum_probs=58.1

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC-----------CCCCCCCEEEECCCCHHHHHHHHHHHCC
Q ss_conf             13796788850455306899999706878832786411213-----------3346981783011220799999997313
Q gi|254780313|r   65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-----------MEPILGVKFFKFDFLDLDSWEFIRQAIG  133 (227)
Q Consensus        65 ~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~-----------~~~i~gv~~~~gDi~~~~~~~~i~~~l~  133 (227)
                      ++||++|||+|++.|-=+-+.+++++..   |.|++||+.+           -.-+.+|.++.||-..--.       -.
T Consensus        73 l~pg~rVLEIGTGSGYqAAlLA~Lvg~~---G~V~TIE~~~~L~~~Ar~~L~~lG~~NV~vv~GDG~~G~p-------e~  142 (317)
T PRK13943         73 LDKGMRVLEIGGGTGYNAAVMSRVVGEK---GLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVP-------EF  142 (317)
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHHCCC---CEEEEEEECHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC-------CC
T ss_conf             8999868996577438999999984878---7599998679999999999997799864999799888886-------67


Q ss_pred             CCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             887489753202110222101578898999889876411487746999
Q gi|254780313|r  134 GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV  181 (227)
Q Consensus       134 ~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~  181 (227)
                      .++|.|+--+|+     +++-++-            ..-|++||.+|+
T Consensus       143 APYD~IIVTAaa-----~~IP~aL------------ldQLk~GGRLVi  173 (317)
T PRK13943        143 SPYDVIFVTVGV-----DEVPETW------------FTQLKEGGRVIV  173 (317)
T ss_pred             CCCCEEEEEECC-----CCCCHHH------------HHHCCCCCEEEE
T ss_conf             997789998527-----6489999------------996185969999


No 109
>KOG1270 consensus
Probab=96.91  E-value=0.0036  Score=40.30  Aligned_cols=101  Identities=21%  Similarity=0.333  Sum_probs=57.6

Q ss_pred             HCCCCCCC------CEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC-----------CCCCCCC-EEEECCCCHH
Q ss_conf             45831379------6788850455306899999706878832786411213-----------3346981-7830112207
Q gi|254780313|r   61 KHQILQSN------RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-----------MEPILGV-KFFKFDFLDL  122 (227)
Q Consensus        61 kf~l~k~g------~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~-----------~~~i~gv-~~~~gDi~~~  122 (227)
                      +.+.+.|+      ++|||.||+-|=-||-.++..      ..|.|||+-+           |.|+..- ..++-     
T Consensus        77 ~v~~~~p~~k~~~g~~ilDvGCGgGLLSepLArlg------a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l-----  145 (282)
T KOG1270          77 RVNNHAPGSKPLLGMKILDVGCGGGLLSEPLARLG------AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRL-----  145 (282)
T ss_pred             CCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHC------CEEEEECCHHHHHHHHHHHHHCCCHHCCCCCEEE-----
T ss_conf             04322887545578647872367550232357508------8568526559999999875104903305641463-----


Q ss_pred             HHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf             9999999731388748975320211022210157889899988987641148774699993
Q gi|254780313|r  123 DSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT  183 (227)
Q Consensus       123 ~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~  183 (227)
                      +......+-+.++||.|+|=+.        +.|...   -...+..+...|+|||.+++-.
T Consensus       146 ~~~~~~~E~~~~~fDaVvcsev--------leHV~d---p~~~l~~l~~~lkP~G~lfitt  195 (282)
T KOG1270         146 EYEDTDVEGLTGKFDAVVCSEV--------LEHVKD---PQEFLNCLSALLKPNGRLFITT  195 (282)
T ss_pred             EHHHCCHHHCCCCCCEEEEHHH--------HHHHHC---HHHHHHHHHHHHCCCCCEEEEE
T ss_conf             0201533214565645441989--------998747---8999999999848898258641


No 110
>PRK13168 rumA 23S rRNA 5-methyluridine methyltransferase; Reviewed
Probab=96.81  E-value=0.0089  Score=37.84  Aligned_cols=75  Identities=24%  Similarity=0.296  Sum_probs=55.7

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC-----------CCCCCCCEEEECCCCHHHHHHHHHHHCC
Q ss_conf             13796788850455306899999706878832786411213-----------3346981783011220799999997313
Q gi|254780313|r   65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-----------MEPILGVKFFKFDFLDLDSWEFIRQAIG  133 (227)
Q Consensus        65 ~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~-----------~~~i~gv~~~~gDi~~~~~~~~i~~~l~  133 (227)
                      +.++..||||=|+=|.++..+++...      .|+||+..+           ...+.|+.|+.+|+.+.-. ...  ...
T Consensus       292 ~~~~~~VlDLYcGvGtfsl~LA~~~~------~V~gvE~~~~av~~A~~Na~~n~i~n~~f~~~d~~~~l~-~~~--~~~  362 (440)
T PRK13168        292 PQPGDRVLDLFCGLGNFTLPLARQAA------EVVGVEGVPAMVERARENARRNGLDNVTFYHANLFEDFT-DQP--WAK  362 (440)
T ss_pred             CCCCCEEEEEECCCCCCCHHHHHCCC------EEEEEECCHHHHHHHHHHHHHCCCCCCEEEECCHHHHHH-HHH--HHC
T ss_conf             67898899862385621111353067------688760579999999999997499987899746456635-578--637


Q ss_pred             CCCCEEEECCCHHHCCC
Q ss_conf             88748975320211022
Q gi|254780313|r  134 GNPDLVLSDMAYPTIGH  150 (227)
Q Consensus       134 ~~~DlVlSDmapn~SG~  150 (227)
                      .++|+|+-|  |.-+|-
T Consensus       363 ~~~D~vi~D--PPR~G~  377 (440)
T PRK13168        363 GGFDKVLLD--PPRAGA  377 (440)
T ss_pred             CCCCEEEEC--CCCCCH
T ss_conf             999989999--885278


No 111
>pfam01596 Methyltransf_3 O-methyltransferase. Members of this family are O-methyltransferases. The family includes catechol o-methyltransferase, caffeoyl-CoA O-methyltransferase, and a family of bacterial O-methyltransferases that may be involved in antibiotic production.
Probab=96.80  E-value=0.03  Score=34.55  Aligned_cols=116  Identities=18%  Similarity=0.177  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC-----------CCC-CCCEEEE
Q ss_conf             7999999999864583137967888504553068999997068788327864112133-----------346-9817830
Q gi|254780313|r   49 ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM-----------EPI-LGVKFFK  116 (227)
Q Consensus        49 sRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~-----------~~i-~gv~~~~  116 (227)
                      +...=+|+.+--+-   .+..+||++|.+-|-=+-..++-+++   +|+|+.+|+.+-           ..+ ..+.++.
T Consensus        29 ~~~~g~~L~~l~~~---~~ak~iLEiGT~~GySal~lA~~l~~---~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~  102 (204)
T pfam01596        29 SPEEGQFLSMLVKL---VGAKRTLEIGVFTGYSLLATALALPE---DGKITACDIDREAYEIGLPFIQKAGVADKIEFRV  102 (204)
T ss_pred             CHHHHHHHHHHHHH---HCCCEEEEEECCCCHHHHHHHHHCCC---CCEEEEEEECHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf             99999999999997---59878999834325999999984899---9689999804899999999999779874479998


Q ss_pred             CCCCHHHHHHHHHHH-CCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE--EECC
Q ss_conf             112207999999973-138874897532021102221015788989998898764114877469999--3059
Q gi|254780313|r  117 FDFLDLDSWEFIRQA-IGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK--TFQG  186 (227)
Q Consensus       117 gDi~~~~~~~~i~~~-l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K--~F~G  186 (227)
                      ||..  ++.+.+.+. -.+.||+|.-|+..        +++      ..-++.+.+.|++||.+|+=  +|.|
T Consensus       103 gdA~--~~l~~l~~~~~~~~fD~vFiDadK--------~~Y------~~y~e~~~~lL~~gGiii~DNvL~~G  159 (204)
T pfam01596       103 GDAL--KTLEQLVEDKPLGEFDFAFVDADK--------SSY------PNYYERLLELVKVGGLIAIDNTLWFG  159 (204)
T ss_pred             ECHH--HHHHHHHHCCCCCCCCEEEEECCH--------HHH------HHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf             7499--999999844777764389981888--------777------99999999863698099994453468


No 112
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=96.79  E-value=0.05  Score=33.16  Aligned_cols=162  Identities=19%  Similarity=0.216  Sum_probs=98.1

Q ss_pred             HHHHHHCCCHHHHHHHHHC--------------CHHHHHHHHH---------HHHH-----------------HCCCCCC
Q ss_conf             9999640899999998818--------------4479999999---------9986-----------------4583137
Q gi|254780313|r   28 DWLNRHINDPYVQRAQLEG--------------WRARSAYKLL---------QINE-----------------KHQILQS   67 (227)
Q Consensus        28 ~W~~r~~~D~y~~~Ak~~g--------------yrsRaafKL~---------eId~-----------------kf~l~k~   67 (227)
                      -|..|-..|++-+.++.+|              -.+-+.|||.         |||-                 |-.+.++
T Consensus        53 ~~g~~~~~d~~~~~~~d~~~vY~~~~ge~~~~~i~~~~~yKLvPt~~G~PTiEIdGIrMhrt~~tdP~~Dt~~Kv~~V~~  132 (287)
T COG2521          53 PEGSRIKLDELPKILEDRGEVYFLKGGEVYKASIAAEHYYKLVPTPPGAPTIEIDGIRMHRTKGTDPLEDTLAKVELVKV  132 (287)
T ss_pred             CCCCEEEEHHHHHHHCCCCEEEEEECCEEEEEEECCCCCEEEECCCCCCCEEEECCEEEECCCCCCCHHHHHHHHHEECC
T ss_conf             66547874022333235514999968849988720586179825799997388815797513676807888756624443


Q ss_pred             --CCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEEC----------CCCCCC-C--CCCEEEECCCCHHHHHHHHHHHC
Q ss_conf             --96788850455306899999706878832786411----------213334-6--98178301122079999999731
Q gi|254780313|r   68 --NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID----------ILDMEP-I--LGVKFFKFDFLDLDSWEFIRQAI  132 (227)
Q Consensus        68 --g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVD----------l~~~~~-i--~gv~~~~gDi~~~~~~~~i~~~l  132 (227)
                        |.+|||.|.+=|-..--|.++ |    ...|+.|.          |+|..+ +  .++..+.||..     +.+..+-
T Consensus       133 ~~G~rVLDtC~GLGYtAi~a~~r-G----A~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~-----e~V~~~~  202 (287)
T COG2521         133 KRGERVLDTCTGLGYTAIEALER-G----AIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAY-----EVVKDFD  202 (287)
T ss_pred             CCCCEEEEECCCCCHHHHHHHHC-C----CCEEEEEEECCCEEEEECCCCCCCCCCCCCCEEECCCHH-----HHHHCCC
T ss_conf             66878443246713899999875-8----748999960877277413588984202003178616599-----9974188


Q ss_pred             CCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEE------EEECCCCHH-HHHHHHHHH-CCEEE
Q ss_conf             3887489753202110222101578898999889876411487746999------930599989-999999862-58469
Q gi|254780313|r  133 GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV------KTFQGGTTN-DILCLLKKH-FQKVI  204 (227)
Q Consensus       133 ~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~------K~F~G~~~~-~l~~~l~~~-F~~V~  204 (227)
                      +..||+|++| -|..|--.   +.-+.++-    .-..++|++||-+.-      |-++|.+.. .+...|++. |..|.
T Consensus       203 D~sfDaIiHD-PPRfS~Ag---eLYseefY----~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~  274 (287)
T COG2521         203 DESFDAIIHD-PPRFSLAG---ELYSEEFY----RELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVK  274 (287)
T ss_pred             CCCCCEEEEC-CCCCCHHH---HHHHHHHH----HHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCEEEE
T ss_conf             6530168607-97331023---57689999----9999970769807997279874024677147899999861734443


Q ss_pred             EEC
Q ss_conf             976
Q gi|254780313|r  205 HVK  207 (227)
Q Consensus       205 ~~K  207 (227)
                      ..+
T Consensus       275 ~~~  277 (287)
T COG2521         275 KVR  277 (287)
T ss_pred             EEH
T ss_conf             232


No 113
>PRK00811 spermidine synthase; Provisional
Probab=96.75  E-value=0.032  Score=34.38  Aligned_cols=123  Identities=17%  Similarity=0.254  Sum_probs=74.0

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC--C--------------CCCCCEEEECCCCHHHHHHHHHH
Q ss_conf             7967888504553068999997068788327864112133--3--------------46981783011220799999997
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM--E--------------PILGVKFFKFDFLDLDSWEFIRQ  130 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~--~--------------~i~gv~~~~gDi~~~~~~~~i~~  130 (227)
                      .-.+||=+|.+-||   ++.+.+.... -.+|.-|||.+.  +              .-+.+..+-+|     ..+.+.+
T Consensus        78 ~pk~VLIiGGGDGg---~~rE~lkh~~-v~~v~~VeiD~~Vi~~~~~~lp~~~~~~~~dprv~~~~~D-----g~~fv~~  148 (283)
T PRK00811         78 NPKKVLIIGGGDGG---TLREVLKHPS-VEKITMVEIDERVVEMSRKYLPEISGGAWDDPRVELVIGD-----GVKFVRE  148 (283)
T ss_pred             CCCEEEEECCCCHH---HHHHHHCCCC-CCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEHHH-----HHHHHHH
T ss_conf             97748995687479---9999842788-5679999468999999999838863133029715998278-----9999984


Q ss_pred             HCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHH-HHHHHHHCCCCCCEEEEEE----ECCCCHHHHHHHHHHHCCEEEE
Q ss_conf             3138874897532021102221015788989998-8987641148774699993----0599989999999862584699
Q gi|254780313|r  131 AIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEA-ATFFALEMLNIGGDFLVKT----FQGGTTNDILCLLKKHFQKVIH  205 (227)
Q Consensus       131 ~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~-al~~A~~~Lk~gG~fV~K~----F~G~~~~~l~~~l~~~F~~V~~  205 (227)
                       ...++|+|+.|. ++-.|.       ...|... =...+.+.|+++|.||+..    |+...+..+.+.++..|..|..
T Consensus       149 -~~~~yDvII~D~-tDP~gp-------a~~Lft~~Fy~~~~~~L~~~Gi~v~Q~~sp~~~~~~~~~~~~~l~~~F~~v~~  219 (283)
T PRK00811        149 -TENSFDVIIVDS-TDPVGP-------AEGLFTKEFYENCKRALKEGGIFVAQSESPFLQADEIKDLHKKLREVFPIVRP  219 (283)
T ss_pred             -CCCCCCEEEEEC-CCCCCH-------HHHHCCHHHHHHHHHHCCCCCEEEECCCCHHHCHHHHHHHHHHHHHHCCCEEE
T ss_conf             -523554899808-998864-------45534599999999853999589992798320699999999999986886689


Q ss_pred             EC
Q ss_conf             76
Q gi|254780313|r  206 VK  207 (227)
Q Consensus       206 ~K  207 (227)
                      +-
T Consensus       220 y~  221 (283)
T PRK00811        220 YQ  221 (283)
T ss_pred             EE
T ss_conf             99


No 114
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; InterPro: IPR014008   Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase .    There are at least two distinct cobalamin biosynthetic pathways in bacteria :  Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii.     Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans.   This entry represents CbiT subunit of precorrin-6Y C5,15-methyltransferase (2.1.1.132 from EC) from the anaerobic pathway, a bifunctional enzyme that catalyses two methylations (at C-5 and C-15) in precorrin-6Y, as well as the decarboxylation of the acetate side chain located in ring C, in order to generate precorrin-8X. In the anaerobic pathway, two enzymes are required to produce precorrin-8X: CbiE and CbiT, which can be fused as CbiET (sometimes called CobL) . In the aerobic pathway, the bifunctional enzyme is CobL .; GO: 0008276 protein methyltransferase activity, 0009236 cobalamin biosynthetic process.
Probab=96.71  E-value=0.013  Score=36.77  Aligned_cols=103  Identities=20%  Similarity=0.157  Sum_probs=63.2

Q ss_pred             CCCCC-EEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEECCCCHHHHHHHHHHH-CCCCCCEEEEC
Q ss_conf             13796-78885045530689999970687883278641121333469817830112207999999973-13887489753
Q gi|254780313|r   65 LQSNR-RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQA-IGGNPDLVLSD  142 (227)
Q Consensus        65 ~k~g~-~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~i~gv~~~~gDi~~~~~~~~i~~~-l~~~~DlVlSD  142 (227)
                      ++|++ .++|+||+-|+=|-=+++++++   .++|+|||-.+-.    +     +.    +....+.+ .-...++|-.|
T Consensus        17 l~~~~~v~wDIGaGtGS~~iE~~~~~p~---~g~v~aiEr~~~~----~-----~~----~~~N~~~~c~~~~~~i~~g~   80 (135)
T TIGR02469        17 LRPGDSVLWDIGAGTGSVTIEAARLVPN---SGRVYAIERNPEA----L-----RL----IERNLRRFCGVSNIVIVEGD   80 (135)
T ss_pred             CCCCCCEEEEECCCCCHHHHHHHHHCCC---CCEEEEEECCHHH----H-----HH----HHHHHHHHCCCCCCEEEECC
T ss_conf             8999946889605748389999973598---6079998537689----8-----79----99999982899963256355


Q ss_pred             CCHHHC---------CCCCCHHH---HHHHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf             202110---------22210157---889899988987641148774699993
Q gi|254780313|r  143 MAYPTI---------GHRKIDHL---RTMSLCEAATFFALEMLNIGGDFLVKT  183 (227)
Q Consensus       143 mapn~S---------G~~~~D~~---~~~~L~~~al~~A~~~Lk~gG~fV~K~  183 (227)
                      ..|+.-         -..+.|..   -+-......++.+...|+|||-.|+-+
T Consensus        81 ap~~~~~~~~~~~~~~~~~~Da~fvGGs~~~~~~il~~~~~~l~~GGr~v~na  133 (135)
T TIGR02469        81 APEELLNSDAPEDSAKLPEPDAVFVGGSGGKLEEILEAVERRLRPGGRIVLNA  133 (135)
T ss_pred             CCCCCCCCCCCHHHCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf             68433367777100588746888883897178999999985059688888851


No 115
>TIGR00406 prmA ribosomal protein L11 methyltransferase; InterPro: IPR004498 Ribosomal protein L11 methyltransferase (2.1.1 from EC) is required for the methylation of ribosomal protein L11. It forms a bifunctional operon in Escherichia coli with panF (pantothenate transport).; GO: 0008276 protein methyltransferase activity, 0006479 protein amino acid methylation.
Probab=96.70  E-value=0.0035  Score=40.42  Aligned_cols=130  Identities=18%  Similarity=0.261  Sum_probs=72.8

Q ss_pred             HHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCC---CCCCEEEE-----CCCCHHHHHHH
Q ss_conf             99986458313796788850455306899999706878832786411213334---69817830-----11220799999
Q gi|254780313|r   56 LQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP---ILGVKFFK-----FDFLDLDSWEF  127 (227)
Q Consensus        56 ~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~---i~gv~~~~-----gDi~~~~~~~~  127 (227)
                      +|..+.+.+=.+-++|+|+||+-|==+ .|+.+.|..    .++|+|+-|..-   ..|...-+     -++.... ..+
T Consensus       185 Le~L~~~d~k~kh~~viD~GCGSGIL~-IAa~~LGa~----~~~g~D~DP~Ave~~r~N~~lN~v~~~~~~~~~~~-vPe  258 (330)
T TIGR00406       185 LELLEDLDLKDKHKKVIDVGCGSGILS-IAALKLGAA----KVVGIDIDPLAVESARKNAELNQVSDRLQVKLENS-VPE  258 (330)
T ss_pred             HHHHHCCCCCCCCCEEEEECCCHHHHH-HHHHHHHHH----HEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHCCC-CCC
T ss_conf             998740147776654787126717899-999975123----11221377289999997687458864576432057-875


Q ss_pred             HHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHH-CCEEEE
Q ss_conf             997313887489753202110222101578898999889876411487746999930599989999999862-584699
Q gi|254780313|r  128 IRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH-FQKVIH  205 (227)
Q Consensus       128 i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~~~-F~~V~~  205 (227)
                      ..+...+++|+|++-+-..              ....-+-.+..+++++|.|++==--+.-.+.+...+... |.-+.+
T Consensus       259 ~~~~~e~~~DViVANiLA~--------------vi~~L~p~~~~L~~~~G~lilSGIl~~~~~sV~~ay~q~GF~~~~~  323 (330)
T TIGR00406       259 LEQPIEGKADVIVANILAE--------------VIKELYPQFSRLVKPGGHLILSGILETQAQSVCEAYEQAGFTVVEI  323 (330)
T ss_pred             CCCCCCCCCCEEEECCHHH--------------HHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHCCCCEEHHH
T ss_conf             3453225667578800245--------------7876413551310689965741347647999999985579463434


No 116
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.60  E-value=0.0029  Score=40.90  Aligned_cols=121  Identities=20%  Similarity=0.149  Sum_probs=70.9

Q ss_pred             HHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC-CCCCCCCEEEECCCCHH
Q ss_conf             81844799999999986458313796788850455306899999706878832786411213-33469817830112207
Q gi|254780313|r   44 LEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-MEPILGVKFFKFDFLDL  122 (227)
Q Consensus        44 ~~gyrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~-~~~i~gv~~~~gDi~~~  122 (227)
                      +-+|.  ---+|.|+..+-+. .+=..+|||||+.|=.-.-+.....      ++.||||.. |-.+...    -++.+-
T Consensus       105 kL~Y~--vP~~l~emI~~~~~-g~F~~~lDLGCGTGL~G~~lR~~a~------~ltGvDiS~nMl~kA~e----Kg~YD~  171 (287)
T COG4976         105 KLGYS--VPELLAEMIGKADL-GPFRRMLDLGCGTGLTGEALRDMAD------RLTGVDISENMLAKAHE----KGLYDT  171 (287)
T ss_pred             HHCCC--CHHHHHHHHHHCCC-CCCCEEEECCCCCCCCCHHHHHHHH------HCCCCCHHHHHHHHHHH----CCCHHH
T ss_conf             73576--18999999975157-7620234426676766276788886------51277626999999886----241578


Q ss_pred             HHHHHHHHH----CCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC
Q ss_conf             999999973----138874897532021102221015788989998898764114877469999305999
Q gi|254780313|r  123 DSWEFIRQA----IGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT  188 (227)
Q Consensus       123 ~~~~~i~~~----l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~  188 (227)
                      -.+.+...+    -+.++|+|.+-           |-.--+-=.+..+..+...|++||-|..-+-+..+
T Consensus       172 L~~Aea~~Fl~~~~~er~DLi~Aa-----------DVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~  230 (287)
T COG4976         172 LYVAEAVLFLEDLTQERFDLIVAA-----------DVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPD  230 (287)
T ss_pred             HHHHHHHHHHHHCCCCCCCCHHHH-----------HHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf             889899987552267764301245-----------67886400346899999855898648987231677


No 117
>KOG1500 consensus
Probab=96.59  E-value=0.0064  Score=38.75  Aligned_cols=120  Identities=18%  Similarity=0.289  Sum_probs=73.6

Q ss_pred             CHHHHHHHHHC----CHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCC--
Q ss_conf             99999998818----447999999999864583137967888504553068999997068788327864112133346--
Q gi|254780313|r   36 DPYVQRAQLEG----WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPI--  109 (227)
Q Consensus        36 D~y~~~Ak~~g----yrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~i--  109 (227)
                      -+|-.+.++++    |.--..|--.-+...-++  .+..|||.||+.|=-+-+|++--     ..+|.+|.-..|..-  
T Consensus       144 ~~YG~L~~QQNMmQDYVRTgTY~~Ail~N~sDF--~~kiVlDVGaGSGILS~FAaqAG-----A~~vYAvEAS~MAqyA~  216 (517)
T KOG1500         144 QFYGYLSQQQNMMQDYVRTGTYQRAILENHSDF--QDKIVLDVGAGSGILSFFAAQAG-----AKKVYAVEASEMAQYAR  216 (517)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CCCEEEEECCCCCHHHHHHHHHC-----CCEEEEEEHHHHHHHHH
T ss_conf             999998888888888885107899987043345--77489981588248999998738-----65389874567999999


Q ss_pred             ---------CCCEEEECCCCHHHHHHHHHHHCCCCCCEEEEC-CCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf             ---------981783011220799999997313887489753-2021102221015788989998898764114877469
Q gi|254780313|r  110 ---------LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSD-MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF  179 (227)
Q Consensus       110 ---------~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSD-mapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~f  179 (227)
                               ..+..|.|-|.+.+        +..++|+++|. |     |.-- -.+|+++    .-.+|.++|+|+|.+
T Consensus       217 ~Lv~~N~~~~rItVI~GKiEdie--------LPEk~DviISEPM-----G~mL-~NERMLE----sYl~Ark~l~P~GkM  278 (517)
T KOG1500         217 KLVASNNLADRITVIPGKIEDIE--------LPEKVDVIISEPM-----GYML-VNERMLE----SYLHARKWLKPNGKM  278 (517)
T ss_pred             HHHHCCCCCCEEEECCCCCCEEC--------CCCCCCEEEECCC-----HHHH-HHHHHHH----HHHHHHHHCCCCCCC
T ss_conf             98743663203787056320103--------7510347872562-----1411-1088899----999998742877744


Q ss_pred             E
Q ss_conf             9
Q gi|254780313|r  180 L  180 (227)
Q Consensus       180 V  180 (227)
                      .
T Consensus       279 f  279 (517)
T KOG1500         279 F  279 (517)
T ss_pred             C
T ss_conf             6


No 118
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=96.42  E-value=0.035  Score=34.15  Aligned_cols=92  Identities=18%  Similarity=0.208  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC-----------CCCCCCCEEEECCCC
Q ss_conf             999999986458313796788850455306899999706878832786411213-----------334698178301122
Q gi|254780313|r   52 AYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-----------MEPILGVKFFKFDFL  120 (227)
Q Consensus        52 afKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~-----------~~~i~gv~~~~gDi~  120 (227)
                      +-+|.+.-..+-=...+ .||||-|+-|.++..+++...      +|+||++.+           ...+.|++|+.+|..
T Consensus       193 ~e~l~~~a~~~~~~~~~-~vlDLYcG~Gtfsl~LA~~~~------~V~gVE~~~~aV~~A~~NA~~N~i~N~~fi~~~a~  265 (363)
T PRK05031        193 NEKMLEWALDATKGSKG-DLLELYCGNGNFTLALARNFR------RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAE  265 (363)
T ss_pred             HHHHHHHHHHHHHCCCC-CEEEEECCCCHHHHHHHHHCC------EEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHH
T ss_conf             99999999997613898-289860586642699886268------79999538999999999999869986499965899


Q ss_pred             HHHH-HHHHHH--------HCCCCCCEEEECCCHHHCCCCC
Q ss_conf             0799-999997--------3138874897532021102221
Q gi|254780313|r  121 DLDS-WEFIRQ--------AIGGNPDLVLSDMAYPTIGHRK  152 (227)
Q Consensus       121 ~~~~-~~~i~~--------~l~~~~DlVlSDmapn~SG~~~  152 (227)
                      +... ....+.        .-...+|+|+-|  |.-+|...
T Consensus       266 ~~~~~~~~~~~~~~l~~~~~~~~~~d~vvvD--PPR~Gl~~  304 (363)
T PRK05031        266 EFTQAMNGVREFRRLKGIDLKSYNFSTIFVD--PPRAGLDE  304 (363)
T ss_pred             HHHHHHHCCCHHHCCCCCCCCCCCCCEEEEC--CCCCCCCH
T ss_conf             9999873431010012466443558648989--99888749


No 119
>pfam08123 DOT1 Histone methylation protein DOT1. The DOT1 domain regulates gene expression by methylating histone H3. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast.
Probab=96.37  E-value=0.052  Score=33.03  Aligned_cols=109  Identities=27%  Similarity=0.361  Sum_probs=67.5

Q ss_pred             HHHHHHHCCCCCCCCEEEEEECCCCHHH-HHHHHHHCCCCCCEE-EEEECCCCCC--------------------CCCCC
Q ss_conf             9999864583137967888504553068-999997068788327-8641121333--------------------46981
Q gi|254780313|r   55 LLQINEKHQILQSNRRIVDLGSSPGSWS-QVAARITGSNANNTR-VVAIDILDME--------------------PILGV  112 (227)
Q Consensus        55 L~eId~kf~l~k~g~~VlDLGaaPGgWs-Qva~~~~~~~~~~~~-VigVDl~~~~--------------------~i~gv  112 (227)
                      +-+|-++-+ +++++..+||||+=|.-. |+|++.      +++ .+||.+.+..                    ...-+
T Consensus        31 is~ii~~~~-l~~~dvF~DLGSGVGnvv~QaAl~t------gc~~s~GiEi~~~~a~~A~~~~~~~~~~~~~~G~~~~~~  103 (205)
T pfam08123        31 LSDVLDKCN-LGPQDVFVDLGSGVGNCVLQAALEF------GCKLSFGCEIMDNASNLAELQDEEFKKRCKLFGKKLGKI  103 (205)
T ss_pred             HHHHHHHHC-CCCCCEEEECCCCCCHHHHHHHHHH------CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCE
T ss_conf             999999839-8976889985888329999999870------965388888656689999999999999999958876873


Q ss_pred             EEEECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEE-EEEECC
Q ss_conf             78301122079999999731388748975320211022210157889899988987641148774699-993059
Q gi|254780313|r  113 KFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL-VKTFQG  186 (227)
Q Consensus       113 ~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV-~K~F~G  186 (227)
                      .+++|||.+++..+++.    .++|+|+-.       |..-|.....+|.+.     +.-|++|--.| .|-|--
T Consensus       104 ~l~~gdFl~~~~~~~~~----~~a~VI~vN-------N~~F~~~Ln~~L~e~-----f~~lk~GtkIVS~k~f~p  162 (205)
T pfam08123       104 EFIRGSFLDNERVEEII----PEADVILVN-------NFAFDPELNLQLKEM-----LQDLKDGCKIISLKSFVP  162 (205)
T ss_pred             EEEECCCCCCHHHHHHH----CCCCEEEEE-------CCCCCHHHHHHHHHH-----HHCCCCCCEEEECCCCCC
T ss_conf             89977778858899863----479889994-------324698899999999-----972999888997765468


No 120
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=96.33  E-value=0.057  Score=32.81  Aligned_cols=136  Identities=21%  Similarity=0.209  Sum_probs=78.2

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC-----------CCCCC-CEEEECCCCHHHHHHHHHHH
Q ss_conf             3137967888504553068999997068788327864112133-----------34698-17830112207999999973
Q gi|254780313|r   64 ILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM-----------EPILG-VKFFKFDFLDLDSWEFIRQA  131 (227)
Q Consensus        64 l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~-----------~~i~g-v~~~~gDi~~~~~~~~i~~~  131 (227)
                      +..+|.+|+|+=|+=|-||--++..-     ..+|+|+||+|-           ..+.+ +..+.||..+...     +.
T Consensus       185 ~v~~GE~V~DmFAGVGpfsi~~Ak~g-----~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~-----~~  254 (341)
T COG2520         185 LVKEGETVLDMFAGVGPFSIPIAKKG-----RPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAP-----EL  254 (341)
T ss_pred             HHCCCCEEEECCCCCCCCHHHHHHCC-----CCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHH-----CC
T ss_conf             30699889983578654012466547-----863999945989999999999855765515679664888502-----04


Q ss_pred             CCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC------HHHHHHHHHHHCCEEEE
Q ss_conf             138874897532021102221015788989998898764114877469999305999------89999999862584699
Q gi|254780313|r  132 IGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT------TNDILCLLKKHFQKVIH  205 (227)
Q Consensus       132 l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~------~~~l~~~l~~~F~~V~~  205 (227)
                        +.+|-|+.-.-+               .+..-+..|+..++.||....=.|.-++      +..+.....+.=.++.+
T Consensus       255 --~~aDrIim~~p~---------------~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~~~~~~v  317 (341)
T COG2520         255 --GVADRIIMGLPK---------------SAHEFLPLALELLKDGGIIHYYEFVPEDDIEERPEKRIKSAARKGGYKVEV  317 (341)
T ss_pred             --CCCCEEEECCCC---------------CCHHHHHHHHHHHHCCCEEEEEECCCHHHCCCCHHHHHHHHHHHCCCCCEE
T ss_conf             --667889838987---------------202338999998514867999962243411112599999987643676327


Q ss_pred             ECCCCCCCCCCEEEEEECCCC
Q ss_conf             768665755824989830755
Q gi|254780313|r  206 VKPVASRAESVEMFLLAKGFR  226 (227)
Q Consensus       206 ~KP~aSR~~S~E~Ylv~~gfK  226 (227)
                      .+-.--|+-|--.|.||...+
T Consensus       318 ~~~r~VksysP~v~hv~vd~~  338 (341)
T COG2520         318 LKVRRVKSYSPGVYHVVVDLR  338 (341)
T ss_pred             EEEEEECCCCCCEEEEEEEEE
T ss_conf             889993231897159999999


No 121
>KOG3420 consensus
Probab=96.32  E-value=0.01  Score=37.41  Aligned_cols=126  Identities=22%  Similarity=0.251  Sum_probs=82.8

Q ss_pred             HHHHHHHCCCHHHHHHHHHCCHHH---HHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECC
Q ss_conf             999996408999999988184479---99999999864583137967888504553068999997068788327864112
Q gi|254780313|r   27 RDWLNRHINDPYVQRAQLEGWRAR---SAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI  103 (227)
Q Consensus        27 ~~W~~r~~~D~y~~~Ak~~gyrsR---aafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl  103 (227)
                      -.|.-.|..++=--+-.-|.|..|   ||-=|.-|++.|+=| .|..++||||+-|--+ .+....+    .-.|+|+||
T Consensus         6 l~~~L~~v~gFeKpk~~LEQY~T~p~iAasM~~~Ih~Tygdi-Egkkl~DLgcgcGmLs-~a~sm~~----~e~vlGfDI   79 (185)
T KOG3420           6 LESRLQQVDGFEKPKLLLEQYPTRPHIAASMLYTIHNTYGDI-EGKKLKDLGCGCGMLS-IAFSMPK----NESVLGFDI   79 (185)
T ss_pred             HHHHHHHHCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHCCC-CCCCHHHHCCCHHHHH-HHHHCCC----CCEEEEEEC
T ss_conf             999998740644431245517996789999999998620120-4746225247611567-7750578----733786405


Q ss_pred             CCC---------CCC-CCCEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             133---------346-9817830112207999999973138874897532021102221015788989998898764
Q gi|254780313|r  104 LDM---------EPI-LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFAL  170 (227)
Q Consensus       104 ~~~---------~~i-~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~  170 (227)
                      -|-         ++. -.+.++++||+++..       .++.+|.++-|- |--|-++-.|-    +....+|.+|-
T Consensus        80 dpeALEIf~rNaeEfEvqidlLqcdildle~-------~~g~fDtaviNp-pFGTk~~~aDm----~fv~~al~~~~  144 (185)
T KOG3420          80 DPEALEIFTRNAEEFEVQIDLLQCDILDLEL-------KGGIFDTAVINP-PFGTKKKGADM----EFVSAALKVAS  144 (185)
T ss_pred             CHHHHHHHHHCHHHHHHHHHEEEEECCCHHC-------CCCEEEEEEECC-CCCCCCCCCCH----HHHHHHHHHHH
T ss_conf             8899999861668752334212222155110-------587676678668-98764344338----99999999999


No 122
>TIGR00537 hemK_rel_arch methylase, putative; InterPro: IPR004557   These proteins exhibit homology to the Saccharomyces cerevisiae (yeast) ORF YDR140w (FYV9). No known function has been described for this yeast ORF though the null mutant is viable and exhibits K1 killer toxin hypersensitivity. Members of this entry are weakly related to the yeast ORF YNL063w which is a putative S-adenosyl-methionine-dependent methyltransferase . Members of this entry are found in archaeal, bacterial and eukaryotic lineages.; GO: 0008168 methyltransferase activity.
Probab=96.27  E-value=0.01  Score=37.54  Aligned_cols=128  Identities=17%  Similarity=0.222  Sum_probs=71.6

Q ss_pred             CCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCC----------CCCCEEEECCCCHHHHHHHHHHHC
Q ss_conf             8313796788850455306899999706878832786411213334----------698178301122079999999731
Q gi|254780313|r   63 QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP----------ILGVKFFKFDFLDLDSWEFIRQAI  132 (227)
Q Consensus        63 ~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~----------i~gv~~~~gDi~~~~~~~~i~~~l  132 (227)
                      .-.++.+-||++|++.|    .++.++..+|. -.|+++|+.|..-          -.++.++++|+++.         .
T Consensus        17 ~~~k~ddeVlEiG~GtG----lvair~~~Kg~-k~i~~tDinP~Avk~~~~NA~~N~~~l~v~~~Dlf~~---------v   82 (183)
T TIGR00537        17 RELKPDDEVLEIGAGTG----LVAIRLKEKGK-KKILTTDINPFAVKLLRENAKLNNVELDVLETDLFEG---------V   82 (183)
T ss_pred             HHHCCCCEEEEEECCHH----HHHHHHHCCCC-CEEEEEECCHHHHHHHHHCCHHCCCCEEEEECCCCCC---------C
T ss_conf             75169952899716804----89999851588-2078863687999987731000266404761113578---------5


Q ss_pred             CC-CCCEEEECCCH--HHCCCCCCHHHH---------HHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHH-
Q ss_conf             38-87489753202--110222101578---------898999889876411487746999930599989999999862-
Q gi|254780313|r  133 GG-NPDLVLSDMAY--PTIGHRKIDHLR---------TMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH-  199 (227)
Q Consensus       133 ~~-~~DlVlSDmap--n~SG~~~~D~~~---------~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~~~-  199 (227)
                      .+ ||||||=- .|  .+++...+|...         --+....=|+-.-.+|++||...+=-=.=.++++.++.+... 
T Consensus        83 ~geKFdviLFN-pPYlp~~~d~~~gd~Ld~A~dGGkdGr~vidrFldelp~~lk~gGrv~l~~SSl~~e~~~~~kl~~~G  161 (183)
T TIGR00537        83 RGEKFDVILFN-PPYLPLEDDEKRGDYLDLAIDGGKDGRKVIDRFLDELPEYLKEGGRVQLIQSSLSDEKDTLDKLDELG  161 (183)
T ss_pred             CCCCEEEEEEC-CCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHCC
T ss_conf             55510277307-89888876523476644333178730578888876568887059989999606688688998876158


Q ss_pred             CCEEEEE
Q ss_conf             5846997
Q gi|254780313|r  200 FQKVIHV  206 (227)
Q Consensus       200 F~~V~~~  206 (227)
                      |+ +.+.
T Consensus       162 F~-~ei~  167 (183)
T TIGR00537       162 FK-VEIV  167 (183)
T ss_pred             CC-EEEE
T ss_conf             84-7998


No 123
>KOG2899 consensus
Probab=96.26  E-value=0.016  Score=36.31  Aligned_cols=45  Identities=20%  Similarity=0.420  Sum_probs=33.3

Q ss_pred             HHHHHCCCCCC----CCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC
Q ss_conf             99864583137----96788850455306899999706878832786411213
Q gi|254780313|r   57 QINEKHQILQS----NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD  105 (227)
Q Consensus        57 eId~kf~l~k~----g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~  105 (227)
                      ++|.+.+.+..    ...+||+||--|--|+-+++..++.    .|+||||.+
T Consensus        44 ~~D~rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r----~iLGvDID~   92 (288)
T KOG2899          44 DSDPRLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPR----RILGVDIDP   92 (288)
T ss_pred             CCCHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCC----EEEEEECCH
T ss_conf             8873443135422476205750677546589999860643----346761568


No 124
>TIGR00080 pimt protein-L-isoaspartate O-methyltransferase; InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase () (PCMT)  (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyzes the transfer of a methyl group from S- adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerization of normal L-aspartyl and L- asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process.
Probab=96.07  E-value=0.039  Score=33.83  Aligned_cols=96  Identities=21%  Similarity=0.217  Sum_probs=60.2

Q ss_pred             CCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------C-------CCCCCCEEEECCCCHHHHHH
Q ss_conf             8313796788850455306899999706878832786411213---------3-------34698178301122079999
Q gi|254780313|r   63 QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------M-------EPILGVKFFKFDFLDLDSWE  126 (227)
Q Consensus        63 ~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~-------~~i~gv~~~~gDi~~~~~~~  126 (227)
                      +-|.|++.|||+||+-|--+=+.+..++.   +|+|+||.-.+         +       =...||.++.||=+.- ...
T Consensus        78 nhL~~~~~vLeiG~GSGY~aavlA~~v~~---~G~V~SiEri~~L~~~A~~~Lk~hhseqL~~~NV~v~~GDG~~G-~~~  153 (228)
T TIGR00080        78 NHLKPGAKVLEIGTGSGYQAAVLAEIVGR---DGLVVSIERIPELVEKARRRLKKHHSEQLGLDNVIVIEGDGRQG-WEE  153 (228)
T ss_pred             HHCCCCCEEEEECCCCHHHHHHHHHHHHC---CCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC-HHH
T ss_conf             52140355665047855899999998713---97189985357889999987654314440688658997788657-102


Q ss_pred             HHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEC
Q ss_conf             99973138874897532021102221015788989998898764114877469999305
Q gi|254780313|r  127 FIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ  185 (227)
Q Consensus       127 ~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~  185 (227)
                            .-++|-|+--+||     +.+-.+.+-+|            +.||.+|+=+=+
T Consensus       154 ------~APYd~I~~~AA~-----k~iP~AL~~QL------------~eGG~L~~Pv~~  189 (228)
T TIGR00080       154 ------KAPYDAILVTAAA-----KEIPKALIDQL------------EEGGILVLPVGE  189 (228)
T ss_pred             ------CCCCCEEEEECCC-----CCCCHHHHHHH------------HHCCEEEECCEE
T ss_conf             ------4883527752378-----98765789999------------728988620000


No 125
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=96.05  E-value=0.085  Score=31.70  Aligned_cols=100  Identities=19%  Similarity=0.242  Sum_probs=64.8

Q ss_pred             CCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC-----------CCCCC-CEEEECCCCHHHHHHHHHHHCC
Q ss_conf             37967888504553068999997068788327864112133-----------34698-1783011220799999997313
Q gi|254780313|r   66 QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM-----------EPILG-VKFFKFDFLDLDSWEFIRQAIG  133 (227)
Q Consensus        66 k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~-----------~~i~g-v~~~~gDi~~~~~~~~i~~~l~  133 (227)
                      .+..+||++|.+=|-=+-..+.-++.   +++++.+|+.+-           ..+.. +..+.|    -++.+.+.....
T Consensus        58 ~~~k~iLEiGT~~GySal~mA~~l~~---~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~----gdal~~l~~~~~  130 (219)
T COG4122          58 SGPKRILEIGTAIGYSALWMALALPD---DGRLTTIERDEERAEIARENLAEAGVDDRIELLLG----GDALDVLSRLLD  130 (219)
T ss_pred             CCCCEEEEEECCCCHHHHHHHHHCCC---CCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEEC----CCHHHHHHHCCC
T ss_conf             49864999635237999999963888---97699970798999999999997597652898835----747999973347


Q ss_pred             CCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE-EECC
Q ss_conf             8874897532021102221015788989998898764114877469999-3059
Q gi|254780313|r  134 GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK-TFQG  186 (227)
Q Consensus       134 ~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K-~F~G  186 (227)
                      +.||+|.-|.++.-              .-..++.+.+.|++||..|+= ++.+
T Consensus       131 ~~fDliFIDadK~~--------------yp~~le~~~~lLr~GGliv~DNvl~~  170 (219)
T COG4122         131 GSFDLVFIDADKAD--------------YPEYLERALPLLRPGGLIVADNVLFG  170 (219)
T ss_pred             CCCCEEEEECCHHH--------------CHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf             88568998378435--------------99999999997378968998303567


No 126
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.05  E-value=0.022  Score=35.45  Aligned_cols=87  Identities=24%  Similarity=0.294  Sum_probs=61.0

Q ss_pred             HHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC-----------CCCCCCCEEEECCCCH
Q ss_conf             99999986458313796788850455306899999706878832786411213-----------3346981783011220
Q gi|254780313|r   53 YKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-----------MEPILGVKFFKFDFLD  121 (227)
Q Consensus        53 fKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~-----------~~~i~gv~~~~gDi~~  121 (227)
                      =||.+.-..+--..++++|+||=|+=|.|+...++..      ..|+||++.+           ...+.|++|..+|..+
T Consensus       279 ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~------~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~  352 (432)
T COG2265         279 EKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRV------KKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEE  352 (432)
T ss_pred             HHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHCCCC------CEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHH
T ss_conf             9999999999743699779993558870135531246------5799996489999999999997398877999586888


Q ss_pred             HHHHHHHHHHCCCCCCEEEECCCHHHCCCC
Q ss_conf             799999997313887489753202110222
Q gi|254780313|r  122 LDSWEFIRQAIGGNPDLVLSDMAYPTIGHR  151 (227)
Q Consensus       122 ~~~~~~i~~~l~~~~DlVlSDmapn~SG~~  151 (227)
                      ...  ...  -+..+|+|+-|  |.-+|..
T Consensus       353 ~~~--~~~--~~~~~d~VvvD--PPR~G~~  376 (432)
T COG2265         353 FTP--AWW--EGYKPDVVVVD--PPRAGAD  376 (432)
T ss_pred             HHH--HHC--CCCCCCEEEEC--CCCCCCC
T ss_conf             865--100--25799989989--9999999


No 127
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=96.02  E-value=0.052  Score=33.05  Aligned_cols=130  Identities=22%  Similarity=0.229  Sum_probs=81.8

Q ss_pred             CCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC------CCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCEE
Q ss_conf             3796788850455306899999706878832786411213------3346981783011220799999997313887489
Q gi|254780313|r   66 QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD------MEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLV  139 (227)
Q Consensus        66 k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~------~~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlV  139 (227)
                      ..|..|++||.+-|-+|.-+..+.-..   ..+.++..++      ++--++++++.||..+.++  .+.++.+-.+|.|
T Consensus        47 esglpVlElGPGTGV~TkaIL~~gv~~---~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~--~l~e~~gq~~D~v  121 (194)
T COG3963          47 ESGLPVLELGPGTGVITKAILSRGVRP---ESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRT--TLGEHKGQFFDSV  121 (194)
T ss_pred             CCCCEEEEECCCCCHHHHHHHHCCCCC---CCEEEEEECHHHHHHHHHHCCCCCCCCCCHHHHHH--HHHHCCCCEEEEE
T ss_conf             459764777698667689999657995---43689982779999999758875130540565787--7865279740168


Q ss_pred             EECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHH---HHHHHCCEEEEECCCC
Q ss_conf             7532021102221015788989998898764114877469999305999899999---9986258469976866
Q gi|254780313|r  140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILC---LLKKHFQKVIHVKPVA  210 (227)
Q Consensus       140 lSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~---~l~~~F~~V~~~KP~a  210 (227)
                      +|-. |-    .+.--.+++++    |+-++..|..||.+|.=.+ |.-.+-+..   .-..+|+.|..==|.|
T Consensus       122 iS~l-Pl----l~~P~~~~iai----le~~~~rl~~gg~lvqftY-gp~s~v~l~r~~y~v~~~~~vvRN~PPA  185 (194)
T COG3963         122 ISGL-PL----LNFPMHRRIAI----LESLLYRLPAGGPLVQFTY-GPLSPVLLGRGDYNVQHFDFVVRNFPPA  185 (194)
T ss_pred             EECC-CC----CCCCHHHHHHH----HHHHHHHCCCCCEEEEEEE-CCCCCCCCCCCCEEEEEEEEEEECCCCE
T ss_conf             8656-00----24867789999----9999985689972799984-6888121355513677866787258964


No 128
>pfam05958 tRNA_U5-meth_tr tRNA (Uracil-5-)-methyltransferase. This family consists of (Uracil-5-)-methyltransferases EC:2.1.1.35 from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity.
Probab=96.01  E-value=0.047  Score=33.31  Aligned_cols=89  Identities=19%  Similarity=0.235  Sum_probs=56.1

Q ss_pred             HHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC-----------CCCCCCCEEEECCCCH
Q ss_conf             99999986458313796788850455306899999706878832786411213-----------3346981783011220
Q gi|254780313|r   53 YKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-----------MEPILGVKFFKFDFLD  121 (227)
Q Consensus        53 fKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~-----------~~~i~gv~~~~gDi~~  121 (227)
                      =+|.+.-..+--.+++ .||||=|+-|.++..+++...      +|+||++.+           ...+.|+.|+.+|..+
T Consensus       184 ~~l~~~a~~~~~~~~~-~vlDlYcG~Gtfsl~lA~~~~------~V~GvE~~~~AV~~A~~Na~~N~i~Nv~f~~~~~~~  256 (353)
T pfam05958       184 IKMLEWACEVTQGSKG-DLLELYCGNGNFSLALAQNFR------RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE  256 (353)
T ss_pred             HHHHHHHHHHHHCCCC-CEEEEECCCCHHHHHHHHHCC------EEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHH
T ss_conf             9999999998626899-589984688888899986478------799996259999999998998699864999728999


Q ss_pred             HH-HHHHHHHH--C------CCCCCEEEECCCHHHCCC
Q ss_conf             79-99999973--1------388748975320211022
Q gi|254780313|r  122 LD-SWEFIRQA--I------GGNPDLVLSDMAYPTIGH  150 (227)
Q Consensus       122 ~~-~~~~i~~~--l------~~~~DlVlSDmapn~SG~  150 (227)
                      .. .......+  +      ...+|+|+=|  |.-+|.
T Consensus       257 ~~~~~~~~~~~~~~~~i~~~~~~~d~vvlD--PPR~G~  292 (353)
T pfam05958       257 FTQAMNGVREFRRLKGIDLKSYNCSTIFVD--PPRAGL  292 (353)
T ss_pred             HHHHHHCCCHHHHCCCCCCCCCCCCCEEEC--CCCCCC
T ss_conf             999875242233203666322467725848--987777


No 129
>KOG0820 consensus
Probab=96.01  E-value=0.01  Score=37.42  Aligned_cols=110  Identities=21%  Similarity=0.302  Sum_probs=70.9

Q ss_pred             CCCHHHHHH--HH-CCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEE
Q ss_conf             400799999--64-089999999881844799999999986458313796788850455306899999706878832786
Q gi|254780313|r   23 QGSSRDWLN--RH-INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV   99 (227)
Q Consensus        23 ~~ss~~W~~--r~-~~D~y~~~Ak~~gyrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~Vi   99 (227)
                      .+||+.|..  .| ..-..+.+...+.+--+ +-=+.+|-++-.+ ||++.||++|-+||.-|+...+.      .-+||
T Consensus        13 ~~ss~~~~~~~~~~~~~~kfnkd~GQHilkN-p~v~~~I~~ka~~-k~tD~VLEvGPGTGnLT~~lLe~------~kkVv   84 (315)
T KOG0820          13 RKSSRAWPEFRNPNSGGSKFNKDFGQHILKN-PLVIDQIVEKADL-KPTDVVLEVGPGTGNLTVKLLEA------GKKVV   84 (315)
T ss_pred             CCCCCCCHHHCCCCCCCCCCCCCCCHHHHCC-HHHHHHHHHCCCC-CCCCEEEEECCCCCHHHHHHHHH------CCEEE
T ss_conf             5577555011065545766554301455547-7889999860478-99877999579877899999972------08489


Q ss_pred             EECCCC-C-CC----CCC------CEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCC
Q ss_conf             411213-3-34----698------17830112207999999973138874897532021102
Q gi|254780313|r  100 AIDILD-M-EP----ILG------VKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIG  149 (227)
Q Consensus       100 gVDl~~-~-~~----i~g------v~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDmapn~SG  149 (227)
                      |+.+.| | ..    ..|      ...+.||+...+.         -.+|+++|..-+++|-
T Consensus        85 A~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~---------P~fd~cVsNlPyqISS  137 (315)
T KOG0820          85 AVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL---------PRFDGCVSNLPYQISS  137 (315)
T ss_pred             EEECCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCC---------CCCCEEECCCCCCCCC
T ss_conf             9940807899999986699865604688503125788---------5103112269853367


No 130
>TIGR00006 TIGR00006 S-adenosyl-methyltransferase MraW; InterPro: IPR002903 This is a family of methyltransferases. Methyltransferases are responsible for the transfer of methyl groups between two molecules.; GO: 0008168 methyltransferase activity.
Probab=96.00  E-value=0.14  Score=30.28  Aligned_cols=84  Identities=18%  Similarity=0.261  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CCCCCC--CEEEECCCC
Q ss_conf             999999986458313796788850455306899999706878832786411213---------334698--178301122
Q gi|254780313|r   52 AYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------MEPILG--VKFFKFDFL  120 (227)
Q Consensus        52 afKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~~i~g--v~~~~gDi~  120 (227)
                      +.||.|   -+++ +|+.+-||+=.+-||=||++.+..+.   .|+.+|+|--+         .....|  +..+.+.|.
T Consensus        16 ~Cklv~---~L~i-k~~G~YiD~T~G~GGHS~~iL~ql~~---~g~L~~iD~D~~ai~~A~~~l~~~~~~~~~~~~~~F~   88 (323)
T TIGR00006        16 VCKLVE---GLNI-KPDGIYIDCTLGRGGHSKAILEQLSE---KGRLIGIDRDKQAIAFAKELLKDFEGRRVVLIHDNFA   88 (323)
T ss_pred             HHHHHH---CCCC-CCCCEEEEECCCCHHHHHHHHHHCCC---CCEEEEEECCHHHHHHHHHHHHHHCCCEEEEECCCCH
T ss_conf             999972---7654-88873654025851789999852399---9507887479899999999853210675788507603


Q ss_pred             HHHHHHHHHHH-CCCCCCEEEECCC
Q ss_conf             07999999973-1388748975320
Q gi|254780313|r  121 DLDSWEFIRQA-IGGNPDLVLSDMA  144 (227)
Q Consensus       121 ~~~~~~~i~~~-l~~~~DlVlSDma  144 (227)
                      ......  .+. .-+++|=||-|.+
T Consensus        89 ~~~~~~--~~~~~~~k~dGIL~DLG  111 (323)
T TIGR00006        89 NFFEYL--KELDLVTKIDGILVDLG  111 (323)
T ss_pred             HHHHHH--HCCCCEEEEEEEEECCC
T ss_conf             420032--11588157745886157


No 131
>KOG2904 consensus
Probab=95.96  E-value=0.056  Score=32.87  Aligned_cols=136  Identities=21%  Similarity=0.168  Sum_probs=72.8

Q ss_pred             CCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCC-----------CCCCCEE-----EECCCCHHHHHHHHHHH
Q ss_conf             9678885045530689999970687883278641121333-----------4698178-----30112207999999973
Q gi|254780313|r   68 NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME-----------PILGVKF-----FKFDFLDLDSWEFIRQA  131 (227)
Q Consensus        68 g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~-----------~i~gv~~-----~~gDi~~~~~~~~i~~~  131 (227)
                      +..++|+||+-|.-+-....-.+    .++|+|||..+..           .+.|-.-     +++|..++.      ..
T Consensus       149 ~~~ildlgtGSGaIslsll~~L~----~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~------~l  218 (328)
T KOG2904         149 HTHILDLGTGSGAISLSLLHGLP----QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEH------PL  218 (328)
T ss_pred             CCEEEEECCCCCHHHHHHHHCCC----CCEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCC------CC
T ss_conf             66688705783188999983478----734899853288999999889987415846898412220125655------45


Q ss_pred             CCCCCCEEEECCCHHHCC--CCCCHHH--------------HHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHH-
Q ss_conf             138874897532021102--2210157--------------88989998898764114877469999305999899999-
Q gi|254780313|r  132 IGGNPDLVLSDMAYPTIG--HRKIDHL--------------RTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILC-  194 (227)
Q Consensus       132 l~~~~DlVlSDmapn~SG--~~~~D~~--------------~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~-  194 (227)
                      +.++.|+++|.= |-+.-  +...+..              --++.....+..|.+.|++||.+..-+-.-.+...+.+ 
T Consensus       219 ~~~~~dllvsNP-PYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~~~~~~lv~~  297 (328)
T KOG2904         219 LEGKIDLLVSNP-PYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVERKEHSYLVRI  297 (328)
T ss_pred             CCCCEEEEECCC-CCCCCCCHHHCCCHHEECCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHH
T ss_conf             457524885389-9655551223271330237445430666326999999876675456688588973355668199999


Q ss_pred             ----HHHHHCCEEEEECCCCCCCC
Q ss_conf             ----99862584699768665755
Q gi|254780313|r  195 ----LLKKHFQKVIHVKPVASRAE  214 (227)
Q Consensus       195 ----~l~~~F~~V~~~KP~aSR~~  214 (227)
                          .....|..+.+..--+-|+.
T Consensus       298 ~m~s~~~d~~~~~~v~~Df~~~~R  321 (328)
T KOG2904         298 WMISLKDDSNGKAAVVSDFAGRPR  321 (328)
T ss_pred             HHHHCHHHCCCHHHEEECCCCCCC
T ss_conf             987132201321331443357863


No 132
>pfam10294 Methyltransf_16 Putative methyltransferase.
Probab=95.91  E-value=0.1  Score=31.24  Aligned_cols=115  Identities=18%  Similarity=0.128  Sum_probs=62.0

Q ss_pred             CCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCC------------CCCCEEEECCCCHHHHHHHHHHHCC
Q ss_conf             3796788850455306899999706878832786411213334------------6981783011220799999997313
Q gi|254780313|r   66 QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP------------ILGVKFFKFDFLDLDSWEFIRQAIG  133 (227)
Q Consensus        66 k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~------------i~gv~~~~gDi~~~~~~~~i~~~l~  133 (227)
                      -++.+||+|||+.|-=.-.++...+    ...|+.-|+.+..+            -..+.+...|-.+..... +  .-.
T Consensus        43 ~~~k~VLELGaG~GL~Gi~~a~~~~----~~~V~lTD~~~~l~~l~~Nv~~N~~~~~~v~~~~LdWg~~~~~~-~--~~~  115 (171)
T pfam10294        43 LSGKNVLELGSGCGLVGIAVALLLP----GASVTITDLEEAIELMKKNIELNKALSSKVTAKVLDWGEELPDD-V--FDP  115 (171)
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHCC----CCEEEECCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHH-H--CCC
T ss_conf             0687678705665758999998579----85899638378999999999970578996699981108988433-3--146


Q ss_pred             CCCCEEEE-CCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE-ECCCCHHHHHHHHHHH
Q ss_conf             88748975-320211022210157889899988987641148774699993-0599989999999862
Q gi|254780313|r  134 GNPDLVLS-DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT-FQGGTTNDILCLLKKH  199 (227)
Q Consensus       134 ~~~DlVlS-Dmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~-F~G~~~~~l~~~l~~~  199 (227)
                      .++|+|+. |.--        +..    +...-+......|+|+|.+++=. .+.+...+|.+.++.+
T Consensus       116 ~~fD~Il~sD~iY--------~~~----~~~~L~~ti~~ll~~~g~~lla~~~R~~~~~~F~~~~~~~  171 (171)
T pfam10294       116 HPVDLILAADCVY--------NED----AFPLLVKTLKDLLGKETVILVAYKKRREAEKRFFKLLKEF  171 (171)
T ss_pred             CCCCEEEEECEEE--------CHH----HHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHC
T ss_conf             7767899712133--------577----7999999999995899899999782067799999998639


No 133
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=95.88  E-value=0.11  Score=30.98  Aligned_cols=103  Identities=22%  Similarity=0.266  Sum_probs=68.5

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECC--CCCC----CCCCCEEEECCCCHHHHHHHHHHHCCCCCC-EE
Q ss_conf             7967888504553068999997068788327864112--1333----469817830112207999999973138874-89
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI--LDME----PILGVKFFKFDFLDLDSWEFIRQAIGGNPD-LV  139 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl--~~~~----~i~gv~~~~gDi~~~~~~~~i~~~l~~~~D-lV  139 (227)
                      .-..|++.|.+=||=.-+-+..+-.-|..-+|++||+  .|..    +.+++.|++|+=++++..+.++..-++..- .|
T Consensus        69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~~~~y~kIfv  148 (237)
T COG3510          69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRLKNEYPKIFV  148 (237)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCEEE
T ss_conf             97506764232574011206769864997328997456675886563179738983798887899999997457996799


Q ss_pred             EECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             753202110222101578898999889876411487746999
Q gi|254780313|r  140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV  181 (227)
Q Consensus       140 lSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~  181 (227)
                      +-|          .||.  ++-.++.|++-..+|.-|--+|+
T Consensus       149 ilD----------sdHs--~~hvLAel~~~~pllsaG~Y~vV  178 (237)
T COG3510         149 ILD----------SDHS--MEHVLAELKLLAPLLSAGDYLVV  178 (237)
T ss_pred             EEC----------CCCH--HHHHHHHHHHHHHHHHCCCEEEE
T ss_conf             964----------8750--99999999976067643756999


No 134
>PRK05785 hypothetical protein; Provisional
Probab=95.87  E-value=0.045  Score=33.42  Aligned_cols=64  Identities=23%  Similarity=0.279  Sum_probs=38.4

Q ss_pred             CCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC-CCCC--CCCEEEECCCCHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf             3796788850455306899999706878832786411213-3346--981783011220799999997313887489753
Q gi|254780313|r   66 QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-MEPI--LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSD  142 (227)
Q Consensus        66 k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~-~~~i--~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSD  142 (227)
                      +++.+||||||++|-.+.   .. .   ....|+|+|+.+ |-.+  .....++||..+       ..+-+..||+|++=
T Consensus        50 ~~~~~vLDva~GTGd~a~---~l-~---~~~~v~~~D~s~~ML~~a~~~~~~v~~~ae~-------LPf~d~sFD~vt~~  115 (225)
T PRK05785         50 KSPLKVLDAGAGPGNMAY---HL-R---KIRYVVALDYTEEMLRLNLVADDKVVGSFEA-------MPFRDKSFDLVMSG  115 (225)
T ss_pred             CCCCEEEEECCCCHHHHH---HH-H---CCCEEEEEECCHHHHHHHHHCCCCEEEHHHH-------CCCCCCCEEEEEEE
T ss_conf             888828995688439999---96-3---4786999988999999876432113731853-------99998825277634


Q ss_pred             C
Q ss_conf             2
Q gi|254780313|r  143 M  143 (227)
Q Consensus       143 m  143 (227)
                      -
T Consensus       116 F  116 (225)
T PRK05785        116 Y  116 (225)
T ss_pred             E
T ss_conf             4


No 135
>pfam08003 Methyltransf_9 Protein of unknown function (DUF1698). This family contains many hypothetical proteins. It also includes two putative methyltransferase proteins.
Probab=95.86  E-value=0.062  Score=32.57  Aligned_cols=117  Identities=22%  Similarity=0.257  Sum_probs=60.0

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC--------C----CCCCCEEEECCCCHHHHHHHHHHHCCC
Q ss_conf             7967888504553068999997068788327864112133--------3----469817830112207999999973138
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM--------E----PILGVKFFKFDFLDLDSWEFIRQAIGG  134 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~--------~----~i~gv~~~~gDi~~~~~~~~i~~~l~~  134 (227)
                      .|.+|||+||+-|-   |+-+-.+. | .-.|+|+|-...        .    +...+..+      +-..+.+-. + .
T Consensus       115 ~gk~VlDVGcgNGY---y~~RMlg~-g-a~~viGiDPs~lf~~QF~ai~~~~~~~~~~~~l------Plg~E~lp~-~-~  181 (315)
T pfam08003       115 KGRTILDVGCGNGY---HMWRMLGE-G-AALVVGIDPSELFLCQFEAVRKLLGNDQRAHLL------PLGIEQLPA-L-E  181 (315)
T ss_pred             CCCEEEECCCCCHH---HHHHHHHC-C-CCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEE------CCCHHHCCC-C-C
T ss_conf             68988751778649---99986223-9-987998898199999999999970898756885------367654866-3-4


Q ss_pred             CCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE--CCC---------------------CHHH
Q ss_conf             87489753202110222101578898999889876411487746999930--599---------------------9899
Q gi|254780313|r  135 NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF--QGG---------------------TTND  191 (227)
Q Consensus       135 ~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F--~G~---------------------~~~~  191 (227)
                      .||+|.|=+--    .+-.|..       ..|.-....|++||.+|.-..  +|.                     ....
T Consensus       182 ~FDtVFsMGVL----YHrrsP~-------~hL~~Lk~~L~~gGeLvLETlvi~gd~~~~L~P~~rYA~M~NV~fiPS~~~  250 (315)
T pfam08003       182 AFDTVFSMGVL----YHRRSPL-------DHLLQLKDQLVKGGELVLETLVIEGDENTVLVPGDRYAQMRNVYFIPSAAA  250 (315)
T ss_pred             CCCEEEEEEEE----ECCCCHH-------HHHHHHHHHCCCCCEEEEEEEEECCCCCEEECCCCCCCCCCCCEECCCHHH
T ss_conf             21557765444----3268989-------999999985287978999987765988725678854147987545478899


Q ss_pred             HHHHH-HHHCCEEEEEC
Q ss_conf             99999-86258469976
Q gi|254780313|r  192 ILCLL-KKHFQKVIHVK  207 (227)
Q Consensus       192 l~~~l-~~~F~~V~~~K  207 (227)
                      +...+ +.-|+.|.++.
T Consensus       251 L~~Wl~r~GF~~i~~vd  267 (315)
T pfam08003       251 LKNWLEKCGFVDVRIVD  267 (315)
T ss_pred             HHHHHHHCCCCEEEEEE
T ss_conf             99999985993278887


No 136
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=95.85  E-value=0.041  Score=33.69  Aligned_cols=82  Identities=21%  Similarity=0.320  Sum_probs=58.4

Q ss_pred             HHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CCCCCCCEEEECCCCHHHHH
Q ss_conf             999986458313796788850455306899999706878832786411213---------33469817830112207999
Q gi|254780313|r   55 LLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------MEPILGVKFFKFDFLDLDSW  125 (227)
Q Consensus        55 L~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~~i~gv~~~~gDi~~~~~~  125 (227)
                      +..|-+.-++ .++++||++|++.|+-|...+++..      +|++|.+.+         +.+..++..++||+...+..
T Consensus        19 ~~kIv~~a~~-~~~d~VlEIGpG~GaLT~~Ll~~~~------~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~   91 (259)
T COG0030          19 IDKIVEAANI-SPGDNVLEIGPGLGALTEPLLERAA------RVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFP   91 (259)
T ss_pred             HHHHHHHCCC-CCCCEEEEECCCCCHHHHHHHHHCC------EEEEEEECHHHHHHHHHHHCCCCCEEEEECCHHCCCCH
T ss_conf             9999985578-9998699978987788999996069------57999968899999997506566559994724247513


Q ss_pred             HHHHHHCCCCCCEEEECCCHHHCC
Q ss_conf             999973138874897532021102
Q gi|254780313|r  126 EFIRQAIGGNPDLVLSDMAYPTIG  149 (227)
Q Consensus       126 ~~i~~~l~~~~DlVlSDmapn~SG  149 (227)
                      ..+      ..+.|+|-.--|+|.
T Consensus        92 ~l~------~~~~vVaNlPY~Iss  109 (259)
T COG0030          92 SLA------QPYKVVANLPYNISS  109 (259)
T ss_pred             HHC------CCCEEEECCCCCCCH
T ss_conf             515------788899808976567


No 137
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=95.81  E-value=0.069  Score=32.27  Aligned_cols=97  Identities=22%  Similarity=0.351  Sum_probs=59.2

Q ss_pred             CCCCCEEEEEECCCCHHHHHH-HHHHCCCCCCEEEEEECCCCCC----CCCCCEEEECCCCHHHHHHHHHHHCCC-CCCE
Q ss_conf             137967888504553068999-9970687883278641121333----469817830112207999999973138-8748
Q gi|254780313|r   65 LQSNRRIVDLGSSPGSWSQVA-ARITGSNANNTRVVAIDILDME----PILGVKFFKFDFLDLDSWEFIRQAIGG-NPDL  138 (227)
Q Consensus        65 ~k~g~~VlDLGaaPGgWsQva-~~~~~~~~~~~~VigVDl~~~~----~i~gv~~~~gDi~~~~~~~~i~~~l~~-~~Dl  138 (227)
                      +++|++||=.|++|.|=..++ ++..|    ..+|+++|..+-.    .--|+... -|..+.+..+.+++..++ .+|+
T Consensus       174 ~~~g~~VlV~GaG~iGl~a~~~ak~~G----a~~Vi~~d~~~~rl~~A~~lGa~~~-i~~~~~~~~~~v~~~t~g~G~Dv  248 (358)
T TIGR03451       174 VKRGDSVAVIGCGGVGDAAIAGAALAG----ASKIIAVDIDDRKLEWAREFGATHT-VNSSGTDPVEAIRALTGGFGADV  248 (358)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHCCCEEE-ECCCCCCHHHHHHHHHCCCCCCE
T ss_conf             999988999673769999999999839----9189999198899999996599099-73998788999999858988749


Q ss_pred             EEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf             975320211022210157889899988987641148774699993
Q gi|254780313|r  139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT  183 (227)
Q Consensus       139 VlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~  183 (227)
                      |+ |    ++|..            .++..++..+++||.+|+==
T Consensus       249 vi-e----~~G~~------------~~~~~al~~~~~gG~iv~~G  276 (358)
T TIGR03451       249 VI-D----AVGRP------------ETYKQAFYARDLAGTVVLVG  276 (358)
T ss_pred             EE-E----CCCCH------------HHHHHHHHHHCCCCEEEEEE
T ss_conf             99-9----99998------------99999999762796999992


No 138
>PRK00274 ksgA dimethyladenosine transferase; Reviewed
Probab=95.81  E-value=0.029  Score=34.62  Aligned_cols=103  Identities=18%  Similarity=0.259  Sum_probs=61.7

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC-----CCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCEE
Q ss_conf             13796788850455306899999706878832786411213-----3346981783011220799999997313887489
Q gi|254780313|r   65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-----MEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLV  139 (227)
Q Consensus        65 ~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~-----~~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlV  139 (227)
                      +.+++.||++|.++|+-|..+.+...      +|++|++.+     ....+++.++.||+.+.+..+.    .....-.|
T Consensus        37 ~~~~d~VlEIGpG~G~LT~~Ll~~~~------~v~aiEiD~~l~~~L~~~~~~~ii~~D~L~~~~~~~----~~~~~~~v  106 (267)
T PRK00274         37 LQPGDRVLEIGPGLGALTEPLLERAA------KVTAIEIDRDLAPILRETDNLTIIEGDALKVDLEEL----AEGQPLKV  106 (267)
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHCC------CEEEEECCHHHHHHHHHCCCEEEEECHHHHCCHHHH----CCCCCEEE
T ss_conf             99999079963888889999996268------058863688999998504786999650664786774----56787279


Q ss_pred             EECCCHHHCCC---CCCHHHH--HHHHHHHHHHHHHHCCCCCC
Q ss_conf             75320211022---2101578--89899988987641148774
Q gi|254780313|r  140 LSDMAYPTIGH---RKIDHLR--TMSLCEAATFFALEMLNIGG  177 (227)
Q Consensus       140 lSDmapn~SG~---~~~D~~~--~~~L~~~al~~A~~~Lk~gG  177 (227)
                      ++-.--|+|..   +.+++..  .--..+.+-++|.++..+-|
T Consensus       107 vgNLPY~Iss~il~~~l~~~~~~~~~vlmvQkEvA~Ri~a~p~  149 (267)
T PRK00274        107 VANLPYNISTPLLFKLLEEAPPIRDMVLMLQKEVAERIVAKPG  149 (267)
T ss_pred             EECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf             9558830312899999854754124001115877777624799


No 139
>pfam01564 Spermine_synth Spermine/spermidine synthase. Spermine and spermidine are polyamines. This family includes spermidine synthase that catalyses the fifth (last) step in the biosynthesis of spermidine from arginine, and spermine synthase.
Probab=95.81  E-value=0.16  Score=29.98  Aligned_cols=124  Identities=15%  Similarity=0.161  Sum_probs=73.4

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC---------------CCCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf             7967888504553068999997068788327864112133---------------3469817830112207999999973
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM---------------EPILGVKFFKFDFLDLDSWEFIRQA  131 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~---------------~~i~gv~~~~gDi~~~~~~~~i~~~  131 (227)
                      +-.+||=+|.+=||-.-   +.....+ -..|.-|||.+.               -.-+.++.+.+|     ....+.+.
T Consensus        75 ~pk~VLIiGGGDG~~~r---Evlk~~~-v~~v~~VEiD~~Vv~~~~~~lp~~~~~~~dprv~l~~~D-----g~~~l~~~  145 (240)
T pfam01564        75 NPKKVLIIGGGDGGALR---EVVKHPS-VEKITLVEIDEKVIEFSKKFLPSLAGGFDDPRVKVVIGD-----GFKFLKDY  145 (240)
T ss_pred             CCCEEEEECCCCHHHHH---HHHCCCC-CCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEEHH-----HHHHHHHC
T ss_conf             85536764586579999---9856799-538999757889999999987985243479855999816-----89999857


Q ss_pred             CCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE----ECCCCHHHHHHHHHHHCCEEEEEC
Q ss_conf             1388748975320211022210157889899988987641148774699993----059998999999986258469976
Q gi|254780313|r  132 IGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT----FQGGTTNDILCLLKKHFQKVIHVK  207 (227)
Q Consensus       132 l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~----F~G~~~~~l~~~l~~~F~~V~~~K  207 (227)
                       ..++|+|+.|. ++-.|..      ..-....-...+.+.|++||.||+-.    ++...+..+.+.++..|..|..+-
T Consensus       146 -~~~yDvII~D~-~DP~~~~------~~Lfs~eFy~~~~~~L~~~Gi~v~Q~~sp~~~~~~~~~i~~~l~~~F~~v~~y~  217 (240)
T pfam01564       146 -LVKFDVIIVDS-TDPVGPA------ENLFSKEFYDLLKRALKEDGVFVTQAESPWLHLELIINILKNGKKVFPVVMPYV  217 (240)
T ss_pred             -CCCCCEEEEEC-CCCCCHH------HHHHHHHHHHHHHHHCCCCCEEEEECCCHHHCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf             -25445899958-9976533------444229999999986599978999248834379999999999997789826998


No 140
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=95.76  E-value=0.025  Score=35.00  Aligned_cols=100  Identities=15%  Similarity=0.193  Sum_probs=63.4

Q ss_pred             CCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CCCCCCCEEEECCCCHHHHHHHHHHHCCCCC
Q ss_conf             3796788850455306899999706878832786411213---------3346981783011220799999997313887
Q gi|254780313|r   66 QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------MEPILGVKFFKFDFLDLDSWEFIRQAIGGNP  136 (227)
Q Consensus        66 k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~  136 (227)
                      .++++||++|+++|.-|+.+.+...      +|++|.+.+         ....+++..+.+|+.+.+..+       ...
T Consensus        12 ~~~d~VlEIGPG~G~LT~~Ll~~~~------~v~aiE~D~~l~~~L~~~~~~~~n~~ii~~D~L~~~~~~-------~~~   78 (169)
T smart00650       12 RPGDTVLEIGPGKGALTEELLERAA------RVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPK-------LQP   78 (169)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHCC------CCCEEECCHHHHHHHHHHHCCCCCEEEEECCHHCCCCCC-------CCC
T ss_conf             9949799968970299999997316------353163788999999986410797799957111255311-------587


Q ss_pred             CEEEECCCHHHCCC---CCCHHHH--HHHHHHHHHHHHHHCCCCCCE
Q ss_conf             48975320211022---2101578--898999889876411487746
Q gi|254780313|r  137 DLVLSDMAYPTIGH---RKIDHLR--TMSLCEAATFFALEMLNIGGD  178 (227)
Q Consensus       137 DlVlSDmapn~SG~---~~~D~~~--~~~L~~~al~~A~~~Lk~gG~  178 (227)
                      ..|++..--|+|..   +...+..  ..-..+.+-++|.++..+-|+
T Consensus        79 ~~iv~NLPY~Iss~il~~ll~~~~~~~~~~lm~QkEvA~Ri~a~p~~  125 (169)
T smart00650       79 YKVVGNLPYNISTPILFKLLEEPPAFRDAVLMVQKEVARRLAAKPGS  125 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             36993476301189999998626541266655399999998637898


No 141
>KOG2915 consensus
Probab=95.75  E-value=0.023  Score=35.28  Aligned_cols=84  Identities=15%  Similarity=0.188  Sum_probs=61.5

Q ss_pred             CHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CCC---CCCCEE
Q ss_conf             44799999999986458313796788850455306899999706878832786411213---------334---698178
Q gi|254780313|r   47 WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------MEP---ILGVKF  114 (227)
Q Consensus        47 yrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~~---i~gv~~  114 (227)
                      |..-.++=|..+    + ++||.+|++-|.+-||.|-+.++-+++.|   .++.+|.-.         ...   -.+|++
T Consensus        90 Yt~Dia~I~~~L----~-i~PGsvV~EsGTGSGSlShaiaraV~ptG---hl~tfefH~~Ra~ka~eeFr~hgi~~~vt~  161 (314)
T KOG2915          90 YTPDIAMILSML----E-IRPGSVVLESGTGSGSLSHAIARAVAPTG---HLYTFEFHETRAEKALEEFREHGIGDNVTV  161 (314)
T ss_pred             ECCCHHHHHHHH----C-CCCCCEEEECCCCCCHHHHHHHHHHCCCC---CEEEEEECHHHHHHHHHHHHHHCCCCCEEE
T ss_conf             455699999986----5-79997898637886348899998637676---269998328789999999997377863489


Q ss_pred             EECCCCHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf             30112207999999973138874897532
Q gi|254780313|r  115 FKFDFLDLDSWEFIRQAIGGNPDLVLSDM  143 (227)
Q Consensus       115 ~~gDi~~~~~~~~i~~~l~~~~DlVlSDm  143 (227)
                      ..-|+.......+     ..++|.|.-||
T Consensus       162 ~hrDVc~~GF~~k-----s~~aDaVFLDl  185 (314)
T KOG2915         162 THRDVCGSGFLIK-----SLKADAVFLDL  185 (314)
T ss_pred             EEEECCCCCCCCC-----CCCCCEEEECC
T ss_conf             9964156773531-----34235699758


No 142
>PTZ00338 dimethyladenosine transferase; Provisional
Probab=95.69  E-value=0.035  Score=34.13  Aligned_cols=70  Identities=14%  Similarity=0.317  Sum_probs=48.8

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CC---CCCCCEEEECCCCHHHHHHHHHHHC
Q ss_conf             13796788850455306899999706878832786411213---------33---4698178301122079999999731
Q gi|254780313|r   65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------ME---PILGVKFFKFDFLDLDSWEFIRQAI  132 (227)
Q Consensus        65 ~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~---~i~gv~~~~gDi~~~~~~~~i~~~l  132 (227)
                      +.+++.||++|.++|++|+..++..      ..|++|.+.+         ..   ...+++.+.||+.+.+.        
T Consensus        36 ~~~~d~VlEIGPG~G~LT~~Ll~~~------~~v~aiEiD~~l~~~L~~~~~~~~~~~n~~ii~~D~Lk~d~--------  101 (296)
T PTZ00338         36 IKPTDTVLEIGPGTGNLTEKLLQLA------KKVIAIEIDPRMVAELKKRFQNSPLASKLQVIEGDALKTEF--------  101 (296)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHCC------CCEEEEEECHHHHHHHHHHHHCCCCCCCCEEECCHHHHCCC--------
T ss_conf             8989957996685429999998358------91799994889999999998514456673577050531856--------


Q ss_pred             CCCCCEEEECCCHHHCC
Q ss_conf             38874897532021102
Q gi|254780313|r  133 GGNPDLVLSDMAYPTIG  149 (227)
Q Consensus       133 ~~~~DlVlSDmapn~SG  149 (227)
                       ..+|+|++-.--|+|.
T Consensus       102 -~~~~~vVaNLPY~ISS  117 (296)
T PTZ00338        102 -PYFDVCVANVPYQISS  117 (296)
T ss_pred             -CCCCEEEECCCCHHHH
T ss_conf             -4114466358704479


No 143
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=95.68  E-value=0.069  Score=32.29  Aligned_cols=121  Identities=16%  Similarity=0.199  Sum_probs=72.0

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC-----------CCCCCCCEEEECCCCHHHHHHHHHHHC-CC
Q ss_conf             796788850455306899999706878832786411213-----------334698178301122079999999731-38
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-----------MEPILGVKFFKFDFLDLDSWEFIRQAI-GG  134 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~-----------~~~i~gv~~~~gDi~~~~~~~~i~~~l-~~  134 (227)
                      +...+||+||+-|.++--.+...+.    ...||||+-.           -..+.|+.++.+|+.+.  .   ...+ ++
T Consensus        54 ~~p~~lEIGfG~G~~l~~~A~~~P~----~~fIGiE~~~~gv~~~~~~~~~~~l~Ni~i~~~da~~~--l---~~~~~~~  124 (229)
T PRK00121         54 DAPIHLEIGFGRGEFLVEMAKANPD----INFIGIEIHEPGVAKALKKIEEAGLKNLRLLCGDAVEV--L---EHFLPDG  124 (229)
T ss_pred             CCCEEEEECCCCCHHHHHHHHHCCC----CCEEEEEEEHHHHHHHHHHHHHCCCCCEEEEECCHHHH--H---HHHCCCC
T ss_conf             9943999615896999999986888----86899996169999999999982998389883478999--9---9714645


Q ss_pred             CC---CEEEECCCHHHCCCCCCHHH-HHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHH--CCEE
Q ss_conf             87---48975320211022210157-8898999889876411487746999930599989999999862--5846
Q gi|254780313|r  135 NP---DLVLSDMAYPTIGHRKIDHL-RTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH--FQKV  203 (227)
Q Consensus       135 ~~---DlVlSDmapn~SG~~~~D~~-~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~~~--F~~V  203 (227)
                      .+   .+--.|==|..     ..+- |.+  ...-|......|++||.+.+++=.-..+...+..+...  |+.+
T Consensus       125 s~~~i~i~FPDPWpKk-----rH~KRRli--~~~fl~~~~~~Lk~~G~i~~~TD~~~Y~~~~~e~~~~~~~f~~~  192 (229)
T PRK00121        125 SLDRIYLNFPDPWPKK-----RHHKRRLV--QPEFLELYARVLKPGGEFHFATDWEEYAEYMLEVFGAHPGFKNL  192 (229)
T ss_pred             CCCEEEECCCCCCCCC-----CCCCCCCC--CHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEC
T ss_conf             4140467179999763-----20240128--99999999985799988999818799999999999868693742


No 144
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=95.67  E-value=0.15  Score=30.09  Aligned_cols=112  Identities=20%  Similarity=0.219  Sum_probs=63.9

Q ss_pred             CCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC-----------CCCCCCCEEEECCCCHHHHHHHHHHHCCCC-
Q ss_conf             96788850455306899999706878832786411213-----------334698178301122079999999731388-
Q gi|254780313|r   68 NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-----------MEPILGVKFFKFDFLDLDSWEFIRQAIGGN-  135 (227)
Q Consensus        68 g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~-----------~~~i~gv~~~~gDi~~~~~~~~i~~~l~~~-  135 (227)
                      +.+++|+|+++|-=.-.. ..+.+..   .|.=+|-+.           --.++|+.++++.+.+....        .+ 
T Consensus        68 ~~~~~DIGSGaGfPGipL-AI~~p~~---~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~--------~~~  135 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPL-AIAFPDL---KVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQE--------KKQ  135 (215)
T ss_pred             CCEEEEECCCCCCCHHHH-HHHCCCC---CEEEECCCCHHHHHHHHHHHHHCCCCEEEEHHHHHHCCCC--------CCC
T ss_conf             887998579999731768-8856688---1899716750799999999985999749863127660144--------665


Q ss_pred             CCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEE-EEEECCCCH-HHHHHHHHHH---CCEEEEE
Q ss_conf             748975320211022210157889899988987641148774699-993059998-9999999862---5846997
Q gi|254780313|r  136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL-VKTFQGGTT-NDILCLLKKH---FQKVIHV  206 (227)
Q Consensus       136 ~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV-~K~F~G~~~-~~l~~~l~~~---F~~V~~~  206 (227)
                      +|+|+|=+-.+.           ..    .+++|..+|++||.|+ .|.-.+.+. .+....+...   +.+|..+
T Consensus       136 ~D~vtsRAva~L-----------~~----l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~~~~~~  196 (215)
T COG0357         136 YDVVTSRAVASL-----------NV----LLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQVEKVFSL  196 (215)
T ss_pred             CCEEEEEEECCH-----------HH----HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf             758985420256-----------88----99999984346883202658765556899999987626817999986


No 145
>KOG2940 consensus
Probab=95.65  E-value=0.012  Score=37.02  Aligned_cols=136  Identities=21%  Similarity=0.349  Sum_probs=78.7

Q ss_pred             HHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC-C
Q ss_conf             999964089999999881844799999999986458313796788850455306899999706878832786411213-3
Q gi|254780313|r   28 DWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-M  106 (227)
Q Consensus        28 ~W~~r~~~D~y~~~Ak~~gyrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~-~  106 (227)
                      -|+.+|.+| |.+++--..    -      .|+-|++-+....++|+||+-|.-..   .+.+++  -++++-+|... |
T Consensus        44 a~~~d~k~d-ylkeeig~r----l------aDrvfD~kk~fp~a~diGcs~G~v~r---hl~~e~--vekli~~DtS~~M  107 (325)
T KOG2940          44 AWLSDQKND-YLKEEIGDR----L------ADRVFDCKKSFPTAFDIGCSLGAVKR---HLRGEG--VEKLIMMDTSYDM  107 (325)
T ss_pred             HHCCHHHHH-HHHHHHHHH----H------HHHHHHHHHHCCCEEECCCCHHHHHH---HHHHCC--HHHEEEEECCHHH
T ss_conf             635100016-899998888----8------89998776607520440655446568---877525--1340664041679


Q ss_pred             ----C--CCCCCE--EEECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCE
Q ss_conf             ----3--469817--83011220799999997313887489753202110222101578898999889876411487746
Q gi|254780313|r  107 ----E--PILGVK--FFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD  178 (227)
Q Consensus       107 ----~--~i~gv~--~~~gDi~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~  178 (227)
                          .  .-+++.  ...+|   +++.+    +-...+|+|+|-|+.    +|..|-..++--|       ...|||.|-
T Consensus       108 ~~s~~~~qdp~i~~~~~v~D---EE~Ld----f~ens~DLiisSlsl----HW~NdLPg~m~~c-------k~~lKPDg~  169 (325)
T KOG2940         108 IKSCRDAQDPSIETSYFVGD---EEFLD----FKENSVDLIISSLSL----HWTNDLPGSMIQC-------KLALKPDGL  169 (325)
T ss_pred             HHHHHCCCCCCEEEEEEECC---HHCCC----CCCCCHHHHHHHHHH----HHHCCCCHHHHHH-------HHHCCCCCC
T ss_conf             99753268985379997255---10156----553501112654334----5640483689998-------874289751


Q ss_pred             EEEEEECCCCHHHHHHHHH
Q ss_conf             9999305999899999998
Q gi|254780313|r  179 FLVKTFQGGTTNDILCLLK  197 (227)
Q Consensus       179 fV~K~F~G~~~~~l~~~l~  197 (227)
                      |+.-+|-|...-+|...+.
T Consensus       170 FiasmlggdTLyELR~slq  188 (325)
T KOG2940         170 FIASMLGGDTLYELRCSLQ  188 (325)
T ss_pred             CHHHHHCCCCHHHHHHHHH
T ss_conf             2167756440999998763


No 146
>KOG3010 consensus
Probab=95.50  E-value=0.026  Score=34.95  Aligned_cols=111  Identities=15%  Similarity=0.098  Sum_probs=60.0

Q ss_pred             CEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC-----CCCCCCCEEE-EC-CCCHHHHHHHHHHHC--CCCCCEE
Q ss_conf             6788850455306899999706878832786411213-----3346981783-01-122079999999731--3887489
Q gi|254780313|r   69 RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-----MEPILGVKFF-KF-DFLDLDSWEFIRQAI--GGNPDLV  139 (227)
Q Consensus        69 ~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~-----~~~i~gv~~~-~g-Di~~~~~~~~i~~~l--~~~~DlV  139 (227)
                      ...+|+||++|-=++.+++.-.      .|||+|+.+     ..+-+.+... .+ -+.+.    ....++  ...+|+|
T Consensus        35 ~~a~DvG~G~Gqa~~~iae~~k------~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~----~~v~L~g~e~SVDlI  104 (261)
T KOG3010          35 RLAWDVGTGNGQAARGIAEHYK------EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSD----EMVDLLGGEESVDLI  104 (261)
T ss_pred             CEEEEECCCCCCCHHHHHHHHH------HHEEECCCHHHHHHHHCCCCCCCCCCCCCCCCC----CCCCCCCCCCCEEEE
T ss_conf             4588845688711478887543------431306879999986118986204578534566----565323787641211


Q ss_pred             EECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC-EEEEEEEC--CCCHHHHHHHHHHHCC
Q ss_conf             75320211022210157889899988987641148774-69999305--9998999999986258
Q gi|254780313|r  140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG-DFLVKTFQ--GGTTNDILCLLKKHFQ  201 (227)
Q Consensus       140 lSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG-~fV~K~F~--G~~~~~l~~~l~~~F~  201 (227)
                      +|--     ..++-|-.+.       ...+-++|++.| .+.+=.+.  -....++...+.+...
T Consensus       105 ~~Aq-----a~HWFdle~f-------y~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~  157 (261)
T KOG3010         105 TAAQ-----AVHWFDLERF-------YKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYD  157 (261)
T ss_pred             HHHH-----HHHHHCHHHH-------HHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf             0545-----6776342999-------999999807789779999724777677888899999765


No 147
>pfam00398 RrnaAD Ribosomal RNA adenine dimethylase.
Probab=95.45  E-value=0.045  Score=33.44  Aligned_cols=77  Identities=25%  Similarity=0.396  Sum_probs=48.9

Q ss_pred             HHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CCCCCCCEEEECCCCHHHHHHHH
Q ss_conf             986458313796788850455306899999706878832786411213---------33469817830112207999999
Q gi|254780313|r   58 INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------MEPILGVKFFKFDFLDLDSWEFI  128 (227)
Q Consensus        58 Id~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~~i~gv~~~~gDi~~~~~~~~i  128 (227)
                      |-+.-++ .++++||++|.+||.-|....+...      .|++|.+.+         ....+++..+.+|+.+.+...  
T Consensus        22 Iv~~~~~-~~~d~VlEIGPG~G~LT~~L~~~~~------~v~aiE~D~~l~~~L~~~~~~~~~~~ii~~D~l~~d~~~--   92 (258)
T pfam00398        22 IVDKANL-QESDTVLEIGPGKGALTEELAKRAK------QVVAIEIDPRLAKRLQKKLALHPNVEVVHQDFLKFSFPK--   92 (258)
T ss_pred             HHHHCCC-CCCCEEEEECCCHHHHHHHHHHCCC------CEEEEECCHHHHHHHHHHHCCCCCEEEEECCHHCCCCCC--
T ss_conf             9997089-9999799979962399999996169------479995447799999986442897799966301057545--


Q ss_pred             HHHCCCCCCEEEECCCHHHC
Q ss_conf             97313887489753202110
Q gi|254780313|r  129 RQAIGGNPDLVLSDMAYPTI  148 (227)
Q Consensus       129 ~~~l~~~~DlVlSDmapn~S  148 (227)
                           ...-.|++-.=-|+|
T Consensus        93 -----~~~~~vvgNLPY~Is  107 (258)
T pfam00398        93 -----HEPFLVVGNIPYNIT  107 (258)
T ss_pred             -----CCCEEEEECCCCCCC
T ss_conf             -----786168944886341


No 148
>pfam02390 Methyltransf_4 Putative methyltransferase. This is a family of putative methyltransferases. The aligned region contains the GXGXG S-AdoMet binding site suggesting a putative methyltransferase activity.
Probab=95.36  E-value=0.087  Score=31.66  Aligned_cols=117  Identities=15%  Similarity=0.137  Sum_probs=68.9

Q ss_pred             CCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------C---CCCCCCEEEECCCCHHHHHHHHHHHCC
Q ss_conf             3796788850455306899999706878832786411213---------3---346981783011220799999997313
Q gi|254780313|r   66 QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------M---EPILGVKFFKFDFLDLDSWEFIRQAIG  133 (227)
Q Consensus        66 k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~---~~i~gv~~~~gDi~~~~~~~~i~~~l~  133 (227)
                      .++..+||+||+-|.|+--.+...+    +...+|||+..         +   +.+.|+.++.+|....     +...+.
T Consensus        19 ~~~pi~lEIG~G~G~~l~~~A~~~p----~~n~iGiEi~~~~v~~~~~k~~~~~~l~Ni~~~~~da~~~-----l~~~~~   89 (199)
T pfam02390        19 NEQPLFLEIGCGMGDFLVAMAKKNP----DKLFIGIEIRVPGVDKALKKIIALRGLQNLRILCGDAMKL-----LPNLFP   89 (199)
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHCC----CCCEEEEEECHHHHHHHHHHHHHHCCCCCEEEECCCHHHH-----HHHHCC
T ss_conf             9994499973688899999999789----9878999950599999999999845777378760479999-----997579


Q ss_pred             -CCCCEEE---ECCCHHHCCCCCCHHH-HHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHH
Q ss_conf             -8874897---5320211022210157-889899988987641148774699993059998999999986
Q gi|254780313|r  134 -GNPDLVL---SDMAYPTIGHRKIDHL-RTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKK  198 (227)
Q Consensus       134 -~~~DlVl---SDmapn~SG~~~~D~~-~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~~  198 (227)
                       +.+|-|.   .|==|..     ..+- |.+  ...-+....+.|++||.+.+++=.-..+...+..+..
T Consensus        90 ~~~l~~i~i~FPDPWpKk-----rH~KRRli--~~~fl~~~~~~Lk~gG~l~~~TD~~~y~~~~~e~~~~  152 (199)
T pfam02390        90 DGSLQKIFINFPDPWPKK-----RHHKRRLL--QPEFLKEYARVLKPGGVLHLATDVEEYFEWMLEHLSE  152 (199)
T ss_pred             CCCEEEEEEECCCCCCCC-----CCCCCCCC--CHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHH
T ss_conf             886427999679998764-----42440007--9999999999638898999982899999999999996


No 149
>KOG3045 consensus
Probab=95.30  E-value=0.084  Score=31.74  Aligned_cols=115  Identities=18%  Similarity=0.242  Sum_probs=64.9

Q ss_pred             HHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCC
Q ss_conf             99998645831379678885045530689999970687883278641121333469817830112207999999973138
Q gi|254780313|r   55 LLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG  134 (227)
Q Consensus        55 L~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~i~gv~~~~gDi~~~~~~~~i~~~l~~  134 (227)
                      |-.|.++.+.......|-|+||+-+   +.|..      ..-.|.+.||...    |-..+.+||.+...       -++
T Consensus       168 ld~ii~~ik~r~~~~vIaD~GCGEa---kiA~~------~~~kV~SfDL~a~----~~~V~~cDm~~vPl-------~d~  227 (325)
T KOG3045         168 LDVIIRKIKRRPKNIVIADFGCGEA---KIASS------ERHKVHSFDLVAV----NERVIACDMRNVPL-------EDE  227 (325)
T ss_pred             HHHHHHHHHHCCCCEEEEECCCCHH---HHHHC------CCCCEEEEEEECC----CCCEEECCCCCCCC-------CCC
T ss_conf             9999999971767647885366423---33204------6665046630027----88535322447867-------667


Q ss_pred             CCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEE-EEECC--CCHHHHHHHHHHH-CCE
Q ss_conf             87489753202110222101578898999889876411487746999-93059--9989999999862-584
Q gi|254780313|r  135 NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV-KTFQG--GTTNDILCLLKKH-FQK  202 (227)
Q Consensus       135 ~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~-K~F~G--~~~~~l~~~l~~~-F~~  202 (227)
                      .+|+++.=.+  .-|.-..|          -+.-|-++|++||.+-+ -+ ++  ++...|...+... |+.
T Consensus       228 svDvaV~CLS--LMgtn~~d----------f~kEa~RiLk~gG~l~IAEv-~SRf~dv~~f~r~l~~lGF~~  286 (325)
T KOG3045         228 SVDVAVFCLS--LMGTNLAD----------FIKEANRILKPGGLLYIAEV-KSRFSDVKGFVRALTKLGFDV  286 (325)
T ss_pred             CCCEEEEEHH--HHCCCHHH----------HHHHHHHHHCCCCEEEEEEH-HHHCCCHHHHHHHHHHCCCEE
T ss_conf             5447875275--53433899----------99999887335866999860-221340889999998728702


No 150
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=95.28  E-value=0.028  Score=34.74  Aligned_cols=94  Identities=27%  Similarity=0.257  Sum_probs=64.9

Q ss_pred             CEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC------CC-----CCCCEEEECCCCHHHHHHHHHHHCCCCCC
Q ss_conf             67888504553068999997068788327864112133------34-----69817830112207999999973138874
Q gi|254780313|r   69 RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM------EP-----ILGVKFFKFDFLDLDSWEFIRQAIGGNPD  137 (227)
Q Consensus        69 ~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~------~~-----i~gv~~~~gDi~~~~~~~~i~~~l~~~~D  137 (227)
                      +++-|||++.|=-+-+|++..      -+|+||...|.      ++     ..++..+.||..+-+.         .++|
T Consensus        34 d~~~DLGaGsGiLs~~Aa~~A------~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f---------e~AD   98 (252)
T COG4076          34 DTFADLGAGSGILSVVAAHAA------ERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF---------ENAD   98 (252)
T ss_pred             HCEEECCCCCCHHHHHHHHHH------CEEEEEECCCHHHHHHHHCCCCCCCCCEEEEECCCCCCCC---------CCCC
T ss_conf             105634688632889887532------0278874180787776505777887646898055321332---------3453


Q ss_pred             EEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEE-EEEECC
Q ss_conf             8975320211022210157889899988987641148774699-993059
Q gi|254780313|r  138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL-VKTFQG  186 (227)
Q Consensus       138 lVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV-~K~F~G  186 (227)
                      +|+|.|         .|.+...+=.--++.-++.+|+..++.+ -++|.|
T Consensus        99 vvicEm---------lDTaLi~E~qVpV~n~vleFLr~d~tiiPq~v~~~  139 (252)
T COG4076          99 VVICEM---------LDTALIEEKQVPVINAVLEFLRYDPTIIPQEVRIG  139 (252)
T ss_pred             EEHHHH---------HHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHC
T ss_conf             408777---------66776334212899999998633882525888614


No 151
>TIGR00740 TIGR00740 methyltransferase, putative; InterPro: IPR005271   Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented.   Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order . Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI ), shared by other AdoMet-Mtases , is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments , although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases , , , . The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences .   The proteins of this family are restricted to the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 0dentity. It is reasonable to predict equivalent function within this subfamily. .
Probab=95.15  E-value=0.029  Score=34.62  Aligned_cols=128  Identities=21%  Similarity=0.243  Sum_probs=68.8

Q ss_pred             HHHHHH-HHHHCCC-CCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCC-CCCCCCCCEEEECCCCHHHHHHHH
Q ss_conf             999999-9864583-1379678885045530689999970687883278641121-333469817830112207999999
Q gi|254780313|r   52 AYKLLQ-INEKHQI-LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL-DMEPILGVKFFKFDFLDLDSWEFI  128 (227)
Q Consensus        52 afKL~e-Id~kf~l-~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~-~~~~i~gv~~~~gDi~~~~~~~~i  128 (227)
                      ||=+-+ +.|+|-- --|+..|-||||+-|.++--+.+.+..  .+.++||||=. ||              =..++..|
T Consensus        44 ayfI~~nL~E~~~~kslp~~~vYDLGCS~G~~~l~~~R~I~~--~~~~~igIDNS~pM--------------~~~~~~~~  107 (247)
T TIGR00740        44 AYFIGMNLAERFVPKSLPKPLVYDLGCSTGAATLSLRRNIQQ--DNIKIIGIDNSMPM--------------LERCREHI  107 (247)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHCCCC--CCEEEEEECCCHHH--------------HHHHHHHH
T ss_conf             999987777654331168874122334323577665304687--85379884188889--------------99999999


Q ss_pred             HHHCCC-CCCEEEECCCHHHCCCCCC--HHHHHHHHH-----------HHHHHHHHHCCCCCCEEEEE-EECCCCH--HH
Q ss_conf             973138-8748975320211022210--157889899-----------98898764114877469999-3059998--99
Q gi|254780313|r  129 RQAIGG-NPDLVLSDMAYPTIGHRKI--DHLRTMSLC-----------EAATFFALEMLNIGGDFLVK-TFQGGTT--ND  191 (227)
Q Consensus       129 ~~~l~~-~~DlVlSDmapn~SG~~~~--D~~~~~~L~-----------~~al~~A~~~Lk~gG~fV~K-~F~G~~~--~~  191 (227)
                      ..+-.. +++++-.|+       +++  ..+.+.-|.           ...|.=.-.-|.+||.+|+- =|..+|.  +.
T Consensus       108 ~~y~~~~Pv~~~~~D~-------~~v~~~~AS~~~L~F~LQFl~P~~R~~LL~KIY~~L~~nGvL~lsEK~~~ED~~~~~  180 (247)
T TIGR00740       108 KAYKNAIPVEVLCMDI-------REVEIKNASMVVLNFTLQFLRPEEREALLKKIYNGLNPNGVLVLSEKFMFEDRKLDK  180 (247)
T ss_pred             HHHCCCCCEEEEHHHH-------HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHH
T ss_conf             8742478823201024-------566665546887887760478234799999987410778668863201366789999


Q ss_pred             HHHHHHHHCCE
Q ss_conf             99999862584
Q gi|254780313|r  192 ILCLLKKHFQK  202 (227)
Q Consensus       192 l~~~l~~~F~~  202 (227)
                      ++-.|-..|++
T Consensus       181 ~li~l~~~fK~  191 (247)
T TIGR00740       181 LLIELHHLFKR  191 (247)
T ss_pred             HHHHHHHHHHH
T ss_conf             99999999874


No 152
>pfam01234 NNMT_PNMT_TEMT NNMT/PNMT/TEMT family.
Probab=95.12  E-value=0.3  Score=28.29  Aligned_cols=48  Identities=15%  Similarity=0.241  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHCCCC-CCCCEEEEEECCCCHHHHHH-HHHHCCCCCCEEEEEECCCC
Q ss_conf             99999998645831-37967888504553068999-99706878832786411213
Q gi|254780313|r   52 AYKLLQINEKHQIL-QSNRRIVDLGSSPGSWSQVA-ARITGSNANNTRVVAIDILD  105 (227)
Q Consensus        52 afKL~eId~kf~l~-k~g~~VlDLGaaPGgWsQva-~~~~~~~~~~~~VigVDl~~  105 (227)
                      -|-|.++.+.|.-- .+|.+.||+|++|-=+.-.. ++...      .|+..|..+
T Consensus        40 ~f~l~~l~~~f~~g~~kg~~LiDvG~GPtiy~~lsA~~~f~------~I~lsDy~~   89 (261)
T pfam01234        40 LFFLPNLLQTFGPGGVKGDTLIDIGSGPTIYQLLSACEVFK------EIHLSDYLP   89 (261)
T ss_pred             HHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHCC------EEEECCCCH
T ss_conf             78899999983778746668998478945888876776507------178602557


No 153
>PHA02056 putative methyltransferase
Probab=95.11  E-value=0.018  Score=35.97  Aligned_cols=120  Identities=13%  Similarity=0.148  Sum_probs=69.1

Q ss_pred             HHHHHHHHHHHHCCCCCC-CCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC------CCCCCCEEEECCCCHH
Q ss_conf             999999999864583137-967888504553068999997068788327864112133------3469817830112207
Q gi|254780313|r   50 RSAYKLLQINEKHQILQS-NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM------EPILGVKFFKFDFLDL  122 (227)
Q Consensus        50 RaafKL~eId~kf~l~k~-g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~------~~i~gv~~~~gDi~~~  122 (227)
                      -|.|--.-+--.|.|=-- ...||||||+=|.-|=+...++.+.    .++-|.+++-      .-+|-++.|.+|+++.
T Consensus        46 GAFFTP~~lA~DF~IDa~~tG~iiDLCAGIG~LSy~~~~r~kp~----~ivCVErN~~y~~vGkkilPeAtWI~~Dv~~~  121 (279)
T PHA02056         46 GAFFTPEGLAWDFTIDAHCTGKVLDLCAGIGRLSFCMLHRCKPE----KIVCVELNPEFARIGKRLLPEAEWITSDVFEF  121 (279)
T ss_pred             CCEECHHHHHHHEEEECCCCCEEEEECCCCCHHHHHHHHCCCCC----CEEEEEECHHHHHHHHHCCCCCEEEECCEECC
T ss_conf             53435156430225502578538882146123579998506886----35899408579886432076402773231303


Q ss_pred             HHHHHHHHHCCCCCCEEEEC---CCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf             99999997313887489753---2021102221015788989998898764114877469999
Q gi|254780313|r  123 DSWEFIRQAIGGNPDLVLSD---MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK  182 (227)
Q Consensus       123 ~~~~~i~~~l~~~~DlVlSD---mapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K  182 (227)
                      ..        .++||+++|.   ++-|++-.++.-.+-.-+.-..++.+| ..+..-|+|++-
T Consensus       122 ~~--------~~~FD~aIsNPPFG~i~~~~sK~~~~ytg~~FE~~Vi~~a-~~~Ad~G~FIiP  175 (279)
T PHA02056        122 ES--------NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLG-QKFADVGYFIVP  175 (279)
T ss_pred             CC--------CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHH-HHHHCCCEEEEE
T ss_conf             56--------6620045338997643333357886645761157732456-676306349961


No 154
>KOG1663 consensus
Probab=95.01  E-value=0.27  Score=28.52  Aligned_cols=102  Identities=25%  Similarity=0.327  Sum_probs=62.0

Q ss_pred             CCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC--------CCCCCC----CEEEECCCCHHHHHHHHHHHCC
Q ss_conf             3796788850455306899999706878832786411213--------334698----1783011220799999997313
Q gi|254780313|r   66 QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD--------MEPILG----VKFFKFDFLDLDSWEFIRQAIG  133 (227)
Q Consensus        66 k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~--------~~~i~g----v~~~~gDi~~~~~~~~i~~~l~  133 (227)
                      .+..++||||.--|-=+--.+..+.+   +|+|+++|+.+        +-...|    +++++|+-  .+..+++....+
T Consensus        72 ~~ak~~lelGvfTGySaL~~Alalp~---dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a--~esLd~l~~~~~  146 (237)
T KOG1663          72 LNAKRTLELGVFTGYSALAVALALPE---DGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPA--LESLDELLADGE  146 (237)
T ss_pred             HCCCEEEEEECCCCHHHHHHHHHCCC---CCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCH--HHHHHHHHHCCC
T ss_conf             58733899812127899999974599---9659999618688887599998606330342342525--666999985579


Q ss_pred             -CCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE--ECC
Q ss_conf             -88748975320211022210157889899988987641148774699993--059
Q gi|254780313|r  134 -GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT--FQG  186 (227)
Q Consensus       134 -~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~--F~G  186 (227)
                       +.+|.+.-|.        +.|.+.      .-.+-+++++++||..++--  +.|
T Consensus       147 ~~tfDfaFvDa--------dK~nY~------~y~e~~l~Llr~GGvi~~DNvl~~G  188 (237)
T KOG1663         147 SGTFDFAFVDA--------DKDNYS------NYYERLLRLLRVGGVIVVDNVLWPG  188 (237)
T ss_pred             CCCEEEEEECC--------CHHHHH------HHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf             98425999736--------667789------9999998562135389992223488


No 155
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.95  E-value=0.043  Score=33.58  Aligned_cols=96  Identities=24%  Similarity=0.303  Sum_probs=65.5

Q ss_pred             HHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC-----------CCCCCCCEEEECCCCHH
Q ss_conf             9999986458313796788850455306899999706878832786411213-----------33469817830112207
Q gi|254780313|r   54 KLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-----------MEPILGVKFFKFDFLDL  122 (227)
Q Consensus        54 KL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~-----------~~~i~gv~~~~gDi~~~  122 (227)
                      +|+|+    =-++|+++||++||+-|-=+-+.+++++      +|++|+.-+           --.+.||.+.+||-..-
T Consensus        63 ~m~~~----L~~~~g~~VLEIGtGsGY~aAvla~l~~------~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G  132 (209)
T COG2518          63 RMLQL----LELKPGDRVLEIGTGSGYQAAVLARLVG------RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKG  132 (209)
T ss_pred             HHHHH----HCCCCCCEEEEECCCCHHHHHHHHHHHC------EEEEEEECHHHHHHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf             99997----4899998688877783099999999748------4999997199999999999976987349997885568


Q ss_pred             HHHHHHHHHC-CCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf             9999999731-3887489753202110222101578898999889876411487746999930
Q gi|254780313|r  123 DSWEFIRQAI-GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF  184 (227)
Q Consensus       123 ~~~~~i~~~l-~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F  184 (227)
                              +. ..++|.|+.-+|.+.-     -            ..-+..|++||.+|+=+=
T Consensus       133 --------~~~~aPyD~I~Vtaaa~~v-----P------------~~Ll~QL~~gGrlv~PvG  170 (209)
T COG2518         133 --------WPEEAPYDRIIVTAAAPEV-----P------------EALLDQLKPGGRLVIPVG  170 (209)
T ss_pred             --------CCCCCCCCEEEEEECCCCC-----C------------HHHHHHCCCCCEEEEEEC
T ss_conf             --------8777984789995035779-----9------------899985065988999985


No 156
>PRK00536 speE spermidine synthase; Provisional
Probab=94.73  E-value=0.38  Score=27.64  Aligned_cols=128  Identities=9%  Similarity=-0.012  Sum_probs=70.8

Q ss_pred             HHHHHCCCCC--CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC--C----CCCCCCEEEECCCCHHHH--HH
Q ss_conf             9986458313--796788850455306899999706878832786411213--3----346981783011220799--99
Q gi|254780313|r   57 QINEKHQILQ--SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD--M----EPILGVKFFKFDFLDLDS--WE  126 (227)
Q Consensus        57 eId~kf~l~k--~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~--~----~~i~gv~~~~gDi~~~~~--~~  126 (227)
                      |+--.--++-  +-.+||=+|.+=||   ++.+.+...   ..|.-|+|-.  +    +-+|..   .+-+.++..  ..
T Consensus        60 EMl~Hvpl~~Hp~Pk~VLIIGGGDGG---~~REvlKH~---~~v~~VEID~~Vv~~sk~ylP~~---~~~~~dpr~~~~~  130 (262)
T PRK00536         60 ELLAHMGGCTKKELKEVLIVDGFDLE---LAHQLFKYD---THVDFVQADEKILDSFISFFPHF---HEVKNNKNFTHAK  130 (262)
T ss_pred             HHHHCHHHHCCCCCCEEEEECCCCHH---HHHHHHCCC---CEEEEEEECHHHHHHHHHHCHHH---HHHHCCCCEEHHH
T ss_conf             88753023218997879998687559---999987289---76699996789999999978565---6541399611399


Q ss_pred             HHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE----ECCCCHHHHHHHHHHHCCE
Q ss_conf             999731388748975320211022210157889899988987641148774699993----0599989999999862584
Q gi|254780313|r  127 FIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT----FQGGTTNDILCLLKKHFQK  202 (227)
Q Consensus       127 ~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~----F~G~~~~~l~~~l~~~F~~  202 (227)
                      ........++|+|+.|-         .|.....+.+       .+.|++||.+|+..    |+........+.++..|..
T Consensus       131 ~~~~~~~~~fDvIIvDs---------l~~~~~~~~l-------~~~L~~~Gi~v~Q~esp~~~~~~~~~~~~~~~~~F~~  194 (262)
T PRK00536        131 QLLDLDIKKYDLIICLQ---------EPDIHKIDGL-------KRMLKEDGVFISVAKHPLLEHVSMQNALKNMGHFFSI  194 (262)
T ss_pred             HHHHHCCCCCCEEEECC---------CCCCCHHHHH-------HHHHCCCCEEEECCCCHHHCHHHHHHHHHHHHHHCCE
T ss_conf             98761547668899889---------9980549999-------9985899899983897120799999999998865994


Q ss_pred             EEEECCC
Q ss_conf             6997686
Q gi|254780313|r  203 VIHVKPV  209 (227)
Q Consensus       203 V~~~KP~  209 (227)
                      +..+=|.
T Consensus       195 ~~~y~~~  201 (262)
T PRK00536        195 AMPFVAP  201 (262)
T ss_pred             EEEEECC
T ss_conf             5998446


No 157
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=94.73  E-value=0.23  Score=28.99  Aligned_cols=104  Identities=21%  Similarity=0.190  Sum_probs=60.4

Q ss_pred             CCCCC----CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC------------CCCCCCCEEEECCCCHHHHH
Q ss_conf             58313----796788850455306899999706878832786411213------------33469817830112207999
Q gi|254780313|r   62 HQILQ----SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD------------MEPILGVKFFKFDFLDLDSW  125 (227)
Q Consensus        62 f~l~k----~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~------------~~~i~gv~~~~gDi~~~~~~  125 (227)
                      |+++.    .|..||||-|+-|+-.-=|..+     ....++.||...            ......+.++.+|.+     
T Consensus        34 FNil~~~~i~g~~~LDlFAGSGaLGlEAlSR-----GA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~-----  103 (187)
T COG0742          34 FNILAPDEIEGARVLDLFAGSGALGLEALSR-----GAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDAL-----  103 (187)
T ss_pred             HHHCCCCCCCCCEEEEECCCCCHHHHHHHHC-----CCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECHH-----
T ss_conf             9873434457988999468764768999857-----885699996598999999999998487612599840089-----


Q ss_pred             HHHHHHCCCC--CCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHH--HHHCCCCCCEEEEEEECC
Q ss_conf             9999731388--748975320211022210157889899988987--641148774699993059
Q gi|254780313|r  126 EFIRQAIGGN--PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF--ALEMLNIGGDFLVKTFQG  186 (227)
Q Consensus       126 ~~i~~~l~~~--~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~--A~~~Lk~gG~fV~K~F~G  186 (227)
                       .....++++  ||+|..|  |..-       ....+.. .++..  ..++|+++|..||..=..
T Consensus       104 -~~L~~~~~~~~FDlVflD--PPy~-------~~l~~~~-~~~~~~~~~~~L~~~~~iv~E~~~~  157 (187)
T COG0742         104 -RALKQLGTREPFDLVFLD--PPYA-------KGLLDKE-LALLLLEENGWLKPGALIVVEHDKD  157 (187)
T ss_pred             -HHHHHCCCCCCCCEEEEC--CCCC-------CCHHHHH-HHHHHHHHCCCCCCCCEEEEEECCC
T ss_conf             -998722778851289968--9975-------3606689-9998887658778896899982787


No 158
>KOG2187 consensus
Probab=94.57  E-value=0.099  Score=31.28  Aligned_cols=92  Identities=18%  Similarity=0.225  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC-----------CCCCCCCEEEECCC
Q ss_conf             9999999986458313796788850455306899999706878832786411213-----------33469817830112
Q gi|254780313|r   51 SAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-----------MEPILGVKFFKFDF  119 (227)
Q Consensus        51 aafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~-----------~~~i~gv~~~~gDi  119 (227)
                      +|=+|--+....--+..+..++|+||+-|-+.--.++.+      ..|+||.+.+           +..|.|++|++|--
T Consensus       367 ~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~------~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqa  440 (534)
T KOG2187         367 AAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGV------KRVIGVEISPDAVEDAEKNAQINGISNATFIVGQA  440 (534)
T ss_pred             HHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEHHHHCCC------CCEEEEECCHHHCCHHHHCCHHCCCCCCEEEECCH
T ss_conf             889999999997089988479986306884000010266------61210233845444355400115865402430642


Q ss_pred             CHHHHHHHHHHHCCCCCC-EEEECCCHHHCCCCC
Q ss_conf             207999999973138874-897532021102221
Q gi|254780313|r  120 LDLDSWEFIRQAIGGNPD-LVLSDMAYPTIGHRK  152 (227)
Q Consensus       120 ~~~~~~~~i~~~l~~~~D-lVlSDmapn~SG~~~  152 (227)
                      .+.  ...+..-.-+.-+ +++.|  |+-.|.+.
T Consensus       441 E~~--~~sl~~~~~~~~~~v~iiD--PpR~Glh~  470 (534)
T KOG2187         441 EDL--FPSLLTPCCDSETLVAIID--PPRKGLHM  470 (534)
T ss_pred             HHC--CCHHCCCCCCCCCEEEEEC--CCCCCCCH
T ss_conf             001--5012056788875689978--88676109


No 159
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=94.55  E-value=0.28  Score=28.48  Aligned_cols=99  Identities=11%  Similarity=0.017  Sum_probs=58.1

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CC--CCCCCEEEECCCCHHHHHHHHHHHCCCC
Q ss_conf             796788850455306899999706878832786411213---------33--4698178301122079999999731388
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------ME--PILGVKFFKFDFLDLDSWEFIRQAIGGN  135 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~--~i~gv~~~~gDi~~~~~~~~i~~~l~~~  135 (227)
                      .+.+||||.|+-|+-.-=|..+     ....|+.||...         ++  ...++..+.+|.     ...+ ...+.+
T Consensus        52 ~~~~vLDLFAGSGalGlEALSR-----GA~~v~fVE~~~~~~~~i~~N~~~l~~~~~~ii~~da-----~~~L-~~~~~~  120 (198)
T PRK10909         52 VDARCLDCFAGSGALGLEALSR-----YAAGATLLEMDRAVSQQLIKNLATLKAGNARVVNTNA-----LSFL-AQPGTP  120 (198)
T ss_pred             CCCEEEECCCCCCHHHHHHHHC-----CCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEHHH-----HHHH-HCCCCC
T ss_conf             9987998277746889999987-----9978999978999999999999984888679995569-----9986-255995


Q ss_pred             CCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECC
Q ss_conf             748975320211022210157889899988987641148774699993059
Q gi|254780313|r  136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG  186 (227)
Q Consensus       136 ~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G  186 (227)
                      ||+|..|  |...-   ....   ++..  +-....+|+++|.+|+-.-..
T Consensus       121 fDlIF~D--PPY~~---~~~~---~~l~--~l~~~~~L~~~gliiiE~~~~  161 (198)
T PRK10909        121 HNVVFVD--PPFRK---GLLE---ETIN--LLEQNGWLADDALIYVESEVE  161 (198)
T ss_pred             EEEEEEC--CCCCC---CHHH---HHHH--HHHHCCCCCCCCEEEEEECCC
T ss_conf             2189989--99765---5599---9999--999888918996999995488


No 160
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=94.48  E-value=0.3  Score=28.31  Aligned_cols=103  Identities=19%  Similarity=0.321  Sum_probs=65.3

Q ss_pred             CCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------C--CCC--CCCEEEECCCCHHHHHHHHHHHC
Q ss_conf             3796788850455306899999706878832786411213---------3--346--98178301122079999999731
Q gi|254780313|r   66 QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------M--EPI--LGVKFFKFDFLDLDSWEFIRQAI  132 (227)
Q Consensus        66 k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~--~~i--~gv~~~~gDi~~~~~~~~i~~~l  132 (227)
                      -.|..+|-|=|..|+.|=+|+.     |..-.+++||+..         |  ..+  ..-.+++.|..+     .+.+ .
T Consensus       551 a~gk~fLNLF~YTgt~sv~Aa~-----gGA~~t~sVD~S~tyl~Wa~~N~~lN~~~~~~h~~v~aD~~~-----wl~~-~  619 (716)
T PRK11783        551 AKGKRFLNLFAYTGTASVHAAL-----GGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRFIQADCLA-----WLKE-A  619 (716)
T ss_pred             HCCCCEEEEEECCCCEEHHHHH-----CCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEECCHHH-----HHHH-C
T ss_conf             0788464312225610213352-----796122786270879999999998549996347389640899-----9985-7


Q ss_pred             CCCCCEEEECCCHHHCCCCCC--------HHHHHHHHHHHHHHHHHHCCCCCCEEEEEE-ECCC
Q ss_conf             388748975320211022210--------157889899988987641148774699993-0599
Q gi|254780313|r  133 GGNPDLVLSDMAYPTIGHRKI--------DHLRTMSLCEAATFFALEMLNIGGDFLVKT-FQGG  187 (227)
Q Consensus       133 ~~~~DlVlSDmapn~SG~~~~--------D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~-F~G~  187 (227)
                      ..++|+|+.|- |-.|-.+..        ||...       +..+...|.|||.++.-. +++.
T Consensus       620 ~~~fDli~~DP-PtFSnSk~m~~~~dvqrDh~~l-------i~~~~~~L~~~G~l~FS~N~r~F  675 (716)
T PRK11783        620 REQFDLIFIDP-PTFSNSKRMEDSFDVQRDHVAL-------IKLAMRLLRPGGTLYFSNNKRGF  675 (716)
T ss_pred             CCCCCEEEECC-CCCCCCCCCCCCCCCCCCHHHH-------HHHHHHHCCCCCEEEEECCCCCC
T ss_conf             77667899889-9998766678863220309999-------99999860899689996288763


No 161
>TIGR00477 tehB tellurite resistance protein TehB; InterPro: IPR004537   Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases . Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite.; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0046690 response to tellurium ion, 0005737 cytoplasm.
Probab=94.43  E-value=0.045  Score=33.43  Aligned_cols=111  Identities=18%  Similarity=0.255  Sum_probs=63.5

Q ss_pred             HHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCC--------CCCCCCCCEEEECCCCHHHHHHHH
Q ss_conf             998645831379678885045530689999970687883278641121--------333469817830112207999999
Q gi|254780313|r   57 QINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL--------DMEPILGVKFFKFDFLDLDSWEFI  128 (227)
Q Consensus        57 eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~--------~~~~i~gv~~~~gDi~~~~~~~~i  128 (227)
                      +|-+--++++||. +|||||+-|-=|-|.+-.    |.  =|-|+|-.        .|+..++...+..++.|....   
T Consensus        64 ~v~eAvk~v~PcK-tLDLGCGqGrNsLyLsl~----GY--DV~awD~n~~siA~v~~~k~~EnL~nl~t~~yDiNaa---  133 (239)
T TIGR00477        64 EVLEAVKVVKPCK-TLDLGCGQGRNSLYLSLA----GY--DVDAWDHNEASIASVEEIKEKENLDNLRTDVYDINAA---  133 (239)
T ss_pred             HHHHHHHCCCCCC-EEECCCCCCHHHHHHHHH----CC--CCEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH---
T ss_conf             7775550237986-532688885378999761----68--4101216866887599888762671100465543355---


Q ss_pred             HHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC-EEEEEEECCCC
Q ss_conf             9731388748975320211022210157889899988987641148774-69999305999
Q gi|254780313|r  129 RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG-DFLVKTFQGGT  188 (227)
Q Consensus       129 ~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG-~fV~K~F~G~~  188 (227)
                        .++...|.|+|=.-.=.=     +..+.=    ..+.=...+-+||| |+|+=..+..|
T Consensus       134 --~~~e~YDFI~sTVVf~FL-----~a~rvP----~iIanMq~hT~pGGYNLIVaAMdTaD  183 (239)
T TIGR00477       134 --ALDEDYDFILSTVVFMFL-----EAERVP----EIIANMQEHTKPGGYNLIVAAMDTAD  183 (239)
T ss_pred             --HCCCCCCEEEEEHHHHHH-----CCCCCH----HHHHHHHHHCCCCCCEEEEEECCCCC
T ss_conf             --401278742102012210-----588772----67886587467987322233215788


No 162
>KOG4300 consensus
Probab=94.39  E-value=0.19  Score=29.50  Aligned_cols=120  Identities=18%  Similarity=0.159  Sum_probs=64.0

Q ss_pred             HCCCC-CCCC-EEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC-CCC----------CCCCE-EEECCCCHHHHHH
Q ss_conf             45831-3796-788850455306899999706878832786411213-334----------69817-8301122079999
Q gi|254780313|r   61 KHQIL-QSNR-RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-MEP----------ILGVK-FFKFDFLDLDSWE  126 (227)
Q Consensus        61 kf~l~-k~g~-~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~-~~~----------i~gv~-~~~gDi~~~~~~~  126 (227)
                      .+.++ +.+. .||++||+||.=-+|--..     ....|..+|-.+ |+.          .+.+. |..+|-.+.    
T Consensus        68 i~~~~gk~~K~~vLEvgcGtG~Nfkfy~~~-----p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l----  138 (252)
T KOG4300          68 IYYFLGKSGKGDVLEVGCGTGANFKFYPWK-----PINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENL----  138 (252)
T ss_pred             HHHHHCCCCCCCEEEECCCCCCCCCCCCCC-----CCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEEECHHCC----
T ss_conf             687734357513699614688885355578-----88568986784879999998886425720577785052107----


Q ss_pred             HHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHCCE
Q ss_conf             9997313887489753202110222101578898999889876411487746999930599989999999862584
Q gi|254780313|r  127 FIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK  202 (227)
Q Consensus       127 ~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~~~F~~  202 (227)
                        .+.-++.+|+|++-..     .=++      +=...+|.--.++|+|||.++.=----.+..-+...+...++.
T Consensus       139 --~~l~d~s~DtVV~Tlv-----LCSv------e~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~ep  201 (252)
T KOG4300         139 --PQLADGSYDTVVCTLV-----LCSV------EDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAEP  201 (252)
T ss_pred             --CCCCCCCEEEEEEEEE-----EECC------CCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHCH
T ss_conf             --4213677115777888-----7205------7799999998875088958999721244210899999987455


No 163
>KOG2361 consensus
Probab=94.37  E-value=0.11  Score=30.99  Aligned_cols=154  Identities=15%  Similarity=0.149  Sum_probs=84.5

Q ss_pred             CCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCC-CCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC------
Q ss_conf             0899999998818447999999999864583137-967888504553068999997068788327864112133------
Q gi|254780313|r   34 INDPYVQRAQLEGWRARSAYKLLQINEKHQILQS-NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM------  106 (227)
Q Consensus        34 ~~D~y~~~Ak~~gyrsRaafKL~eId~kf~l~k~-g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~------  106 (227)
                      .-|.+|+.-+..=+..|-. =+.|..+=+.+-.+ ..++|++||+-|.-+==+.+..++  .+-+|+++|..|-      
T Consensus        38 ~wD~fy~~~~~rFfkdR~w-L~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n--~~l~v~acDfsp~Ai~~vk  114 (264)
T KOG2361          38 YWDTFYKIHENRFFKDRNW-LLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPN--NRLKVYACDFSPRAIELVK  114 (264)
T ss_pred             HHHHHHHHCCCCCCCHHHH-HHHHHHHHHCCCCCCHHHHEEECCCCCCCCCHHHHCCCC--CCEEEEECCCCHHHHHHHH
T ss_conf             6456665324545311677-877567750755557345112224777512244424899--8738997489868999987


Q ss_pred             ----CCCCCCEEEECCCCHHHHHHHHHHHCCCCCCEE-----EECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             ----346981783011220799999997313887489-----75320211022210157889899988987641148774
Q gi|254780313|r  107 ----EPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLV-----LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG  177 (227)
Q Consensus       107 ----~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlV-----lSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG  177 (227)
                          .....+.....|++.++.   ......+.+|.|     +|-+.|+-              -..++.-...+|+|||
T Consensus       115 ~~~~~~e~~~~afv~Dlt~~~~---~~~~~~~svD~it~IFvLSAi~pek--------------~~~a~~nl~~llKPGG  177 (264)
T KOG2361         115 KSSGYDESRVEAFVWDLTSPSL---KEPPEEGSVDIITLIFVLSAIHPEK--------------MQSVIKNLRTLLKPGG  177 (264)
T ss_pred             HCCCCCHHHHCCCCEECCCHHC---CCCCCCCCCCEEEEEEEEECCCHHH--------------HHHHHHHHHHHHCCCC
T ss_conf             3633264550120001656010---3788867633478999875148477--------------8999999999748886


Q ss_pred             EEEEEEECCCCHHHHHHHHHHHCCEEEEEC
Q ss_conf             699993059998999999986258469976
Q gi|254780313|r  178 DFLVKTFQGGTTNDILCLLKKHFQKVIHVK  207 (227)
Q Consensus       178 ~fV~K~F~G~~~~~l~~~l~~~F~~V~~~K  207 (227)
                      .+++.-|--.+..++.-.-.+.+.....++
T Consensus       178 ~llfrDYg~~DlaqlRF~~~~~i~~nfYVR  207 (264)
T KOG2361         178 SLLFRDYGRYDLAQLRFKKGQCISENFYVR  207 (264)
T ss_pred             EEEEEECCCCHHHHHHCCCCCEEECCEEEC
T ss_conf             799841454347887515774320145881


No 164
>pfam03686 UPF0146 Uncharacterized protein family (UPF0146). The function of this family of proteins is unknown.
Probab=94.36  E-value=0.46  Score=27.11  Aligned_cols=97  Identities=23%  Similarity=0.282  Sum_probs=70.6

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCHH
Q ss_conf             79678885045530689999970687883278641121333469817830112207999999973138874897532021
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYP  146 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDmapn  146 (227)
                      +...|+++|  =|....+|..+...   +..|+++|+.+.....|+.++..|+++++.     +.. ..+|+|-|==-| 
T Consensus        13 ~~gkiVEVG--IG~~~~vA~~L~~~---g~dv~~tDi~~~av~~gl~~v~DDif~P~~-----~lY-~~A~lIYSIRPp-   80 (127)
T pfam03686        13 ARGKVVEVG--IGFFLDVAKRLAER---GFDVLATDINEKAVPEGLRFVVDDITNPNI-----SIY-EGADLIYSIRPP-   80 (127)
T ss_pred             CCCCEEEEE--CCCCHHHHHHHHHC---CCCEEEEECCCCCCCCCCCEEECCCCCCCH-----HHH-CCCCEEEECCCC-
T ss_conf             788589991--36888999999985---996899977765766788878725889898-----895-587889981898-


Q ss_pred             HCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHH
Q ss_conf             10222101578898999889876411487746999930599989
Q gi|254780313|r  147 TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTN  190 (227)
Q Consensus       147 ~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~  190 (227)
                                  -||....+++|..+   |..++++-+-|+...
T Consensus        81 ------------~El~~~i~~lA~~v---~a~liI~PL~~e~~~  109 (127)
T pfam03686        81 ------------PELQSAILDVAKAV---GAPLYIKPLTGEPVP  109 (127)
T ss_pred             ------------HHHHHHHHHHHHHC---CCCEEEECCCCCCCC
T ss_conf             ------------78889999999981---998999848899777


No 165
>KOG0024 consensus
Probab=94.12  E-value=0.036  Score=34.06  Aligned_cols=100  Identities=17%  Similarity=0.298  Sum_probs=59.5

Q ss_pred             CCCCCEEEEEECCCCHHHHH-HHHHHCCCCCCEEEEEECCCC----CCCCCCCEEEECCCC--H-HHHHHHHHHHCCCCC
Q ss_conf             13796788850455306899-999706878832786411213----334698178301122--0-799999997313887
Q gi|254780313|r   65 LQSNRRIVDLGSSPGSWSQV-AARITGSNANNTRVVAIDILD----MEPILGVKFFKFDFL--D-LDSWEFIRQAIGGNP  136 (227)
Q Consensus        65 ~k~g~~VlDLGaaPGgWsQv-a~~~~~~~~~~~~VigVDl~~----~~~i~gv~~~~gDi~--~-~~~~~~i~~~l~~~~  136 (227)
                      +++|.+||=+||+|=|-.-- +++-+|.    .+|+.+|+.+    +..--|++.+.-+-.  + .+..+.+...++...
T Consensus       167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA----~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~  242 (354)
T KOG0024         167 VKKGSKVLVLGAGPIGLLTGLVAKAMGA----SDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQ  242 (354)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCC----CCEEEEECCHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHCCCCC
T ss_conf             6668868997676899999999987498----728996067779999998297577304455658999999986416667


Q ss_pred             CEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf             489753202110222101578898999889876411487746999930
Q gi|254780313|r  137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF  184 (227)
Q Consensus       137 DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F  184 (227)
                          .|-..++||..-            .++.|...++.||++|.=-+
T Consensus       243 ----~d~~~dCsG~~~------------~~~aai~a~r~gGt~vlvg~  274 (354)
T KOG0024         243 ----PDVTFDCSGAEV------------TIRAAIKATRSGGTVVLVGM  274 (354)
T ss_pred             ----CCEEEECCCCHH------------HHHHHHHHHCCCCEEEEECC
T ss_conf             ----986898666046------------68989987512878999654


No 166
>pfam05148 Methyltransf_8 Hypothetical methyltransferase. This family consists of several uncharacterized eukaryotic proteins which are related to methyltransferases pfam01209.
Probab=94.08  E-value=0.53  Score=26.75  Aligned_cols=164  Identities=18%  Similarity=0.160  Sum_probs=85.8

Q ss_pred             CCCCCCCCCCEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHCCHHHHHH----HHHHHHHHCCCCCCCCEEEEEECCCC
Q ss_conf             89998756541100001464007999996408999999988184479999----99999864583137967888504553
Q gi|254780313|r    4 PPGSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAY----KLLQINEKHQILQSNRRIVDLGSSPG   79 (227)
Q Consensus         4 ~~~~~~~~~~~~~~~~k~~~~ss~~W~~r~~~D~y~~~Ak~~gyrsRaaf----KL~eId~kf~l~k~g~~VlDLGaaPG   79 (227)
                      .-.+|+=|.+..+..+-.    |..=.+.-..||=.-.+=.+|||.--.=    =+..|.+..+=..+...|-|+||+-+
T Consensus         4 kL~gsrFR~iNE~LYT~~----s~~a~~~f~~~P~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~lk~~p~~~vIaD~GCGdA   79 (214)
T pfam05148         4 RLDGGRFRMLNEKLYTGK----GSRAGDLFKEDPDAFDLYHEGFNLQVKKWPVNPLDVIIRKLKRRPGNGVIADLGCGEA   79 (214)
T ss_pred             HHCCCCHHHHHHHHCCCC----HHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEECCCCHH
T ss_conf             003473027666562797----8999999986969999999999999974897779999999984899718997588657


Q ss_pred             HHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHH
Q ss_conf             06899999706878832786411213334698178301122079999999731388748975320211022210157889
Q gi|254780313|r   80 SWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTM  159 (227)
Q Consensus        80 gWsQva~~~~~~~~~~~~VigVDl~~~~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~  159 (227)
                      .   .|.. +.   +.-+|.+.||....+    ..+..||.+..       .-++.+|+++-=.|  .-|.-..|     
T Consensus        80 ~---lA~~-~~---~~~kV~SfDLva~n~----~Vt~cDi~~~P-------L~d~svDvaVfCLS--LMGTN~~~-----  134 (214)
T pfam05148        80 R---IAFR-KR---EFENVHSFDLVAVNK----RVIPCDMARVP-------LEDESVDVAVFCLS--LMGTNIAD-----  134 (214)
T ss_pred             H---HHHH-CC---CCCEEEEEECCCCCC----CCCCCCCCCCC-------CCCCCEEEEEEEHH--HHCCCHHH-----
T ss_conf             9---9986-46---787388513256898----83513533687-------88772636877587--62887799-----


Q ss_pred             HHHHHHHHHHHHCCCCCCEEEE-EE---ECCCCHHHHHHHHHHH-CCEE
Q ss_conf             8999889876411487746999-93---0599989999999862-5846
Q gi|254780313|r  160 SLCEAATFFALEMLNIGGDFLV-KT---FQGGTTNDILCLLKKH-FQKV  203 (227)
Q Consensus       160 ~L~~~al~~A~~~Lk~gG~fV~-K~---F~G~~~~~l~~~l~~~-F~~V  203 (227)
                           -+.-|-++|++||.+.+ -+   |  .+..+|++.++.. |+..
T Consensus       135 -----fi~EA~RvLk~~G~L~IAEV~SRf--~~~~~Fv~~~~~~GF~~~  176 (214)
T pfam05148       135 -----FLKEANRILKNGGLLKIAEVRSRF--PSVGLFERAFTKLGFEVE  176 (214)
T ss_pred             -----HHHHHHHHCCCCCEEEEEEEECCC--CCHHHHHHHHHHCCCEEE
T ss_conf             -----999987603108789999974016--898999999997597677


No 167
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=94.02  E-value=0.39  Score=27.57  Aligned_cols=96  Identities=23%  Similarity=0.296  Sum_probs=68.1

Q ss_pred             CCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCH
Q ss_conf             37967888504553068999997068788327864112133346981783011220799999997313887489753202
Q gi|254780313|r   66 QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAY  145 (227)
Q Consensus        66 k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDmap  145 (227)
                      .+| .|++.|  =|-++.||..+-. .  +.-|+++|+.+....+|+.++..|++++..     ... ..+|+|-|==.|
T Consensus        13 ~~g-kVvEVG--iG~~~~VA~~L~e-~--g~dv~atDI~~~~a~~g~~~v~DDitnP~~-----~iY-~~A~lIYSiRpp   80 (129)
T COG1255          13 ARG-KVVEVG--IGFFLDVAKRLAE-R--GFDVLATDINEKTAPEGLRFVVDDITNPNI-----SIY-EGADLIYSIRPP   80 (129)
T ss_pred             CCC-CEEEEC--CCHHHHHHHHHHH-C--CCCEEEEECCCCCCCCCCEEEECCCCCCCH-----HHH-HCCCCEEECCCC
T ss_conf             588-379981--4117999999997-4--886899852301376553388724779647-----776-270012662798


Q ss_pred             HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCH
Q ss_conf             11022210157889899988987641148774699993059998
Q gi|254780313|r  146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT  189 (227)
Q Consensus       146 n~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~  189 (227)
                                   -+|....+++|..+   |-.+.+|-+.|+..
T Consensus        81 -------------pEl~~~ildva~aV---ga~l~I~pL~Ge~v  108 (129)
T COG1255          81 -------------PELQSAILDVAKAV---GAPLYIKPLTGEPV  108 (129)
T ss_pred             -------------HHHHHHHHHHHHHH---CCCEEEEECCCCCC
T ss_conf             -------------89989999999860---99789971689977


No 168
>pfam00145 DNA_methylase C-5 cytosine-specific DNA methylase.
Probab=93.95  E-value=0.46  Score=27.11  Aligned_cols=136  Identities=20%  Similarity=0.153  Sum_probs=72.8

Q ss_pred             CEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCC------CCCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf             678885045530689999970687883278641121333------46981783011220799999997313887489753
Q gi|254780313|r   69 RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME------PILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSD  142 (227)
Q Consensus        69 ~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~------~i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSD  142 (227)
                      ++||||-|+.||++.=. +..|   .. .+.++|+.+..      ..+.  .+.+||++.+..+     + ..+|+++  
T Consensus         1 ~~vidlF~G~GG~s~G~-~~aG---~~-~~~a~e~d~~a~~ty~~N~~~--~~~~Di~~~~~~~-----~-~~~Dvl~--   65 (319)
T pfam00145         1 FKFIDLFAGIGGFRLGL-EQAG---FE-CVAANEIDKSAAKTYEANFPK--VPIGDITLIDIKD-----I-PDIDILT--   65 (319)
T ss_pred             CCEEEECCCCCHHHHHH-HHCC---CE-EEEEEECCHHHHHHHHHHCCC--CCCCCCCCCCHHH-----C-CCCCEEE--
T ss_conf             95899780707899999-9879---92-999983899999999987799--9617754088747-----8-8868898--


Q ss_pred             CCHHHCCC-----C-CCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE---E----CCCCHHHHHHHHHHHCCEEEEECCC
Q ss_conf             20211022-----2-10157889899988987641148774699993---0----5999899999998625846997686
Q gi|254780313|r  143 MAYPTIGH-----R-KIDHLRTMSLCEAATFFALEMLNIGGDFLVKT---F----QGGTTNDILCLLKKHFQKVIHVKPV  209 (227)
Q Consensus       143 mapn~SG~-----~-~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~---F----~G~~~~~l~~~l~~~F~~V~~~KP~  209 (227)
                      ++|.|.|.     + ..+..+. .|....+.+. ..++|. .||+--   +    .|..+..++..|...=..|....-.
T Consensus        66 ggpPCQ~fS~ag~~~~~~d~r~-~L~~~~~~~v-~~~~Pk-~~v~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~vln  142 (319)
T pfam00145        66 GGFPCQDFSIAGKQKGFEDTRG-TLFFEIIRII-KEKKPK-AFLLENVKGLLSHDNGNTLNVILETLEELGYSVSWKVLN  142 (319)
T ss_pred             ECCCCCCCCCCCCCCCCCCCCC-HHHHHHHHHH-HHHCCC-EEEEECCHHHHCCCCHHHHHHHHHHHHHCCCCCCEEECC
T ss_conf             6899987240155688534331-3899999987-751986-887304087864453058999999998679855321077


Q ss_pred             CCC---CCCCEE-EEEE
Q ss_conf             657---558249-8983
Q gi|254780313|r  210 ASR---AESVEM-FLLA  222 (227)
Q Consensus       210 aSR---~~S~E~-Ylv~  222 (227)
                      |+.   +.++|. |+||
T Consensus       143 a~dyGvPQ~R~R~fiig  159 (319)
T pfam00145       143 ASDYGVPQNRERVFIVG  159 (319)
T ss_pred             HHHCCCCCCCCEEEEEE
T ss_conf             88808987641899999


No 169
>KOG2671 consensus
Probab=93.84  E-value=0.17  Score=29.77  Aligned_cols=114  Identities=18%  Similarity=0.145  Sum_probs=71.3

Q ss_pred             HHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCC--CCC------------------CEEEEC
Q ss_conf             986458313796788850455306899999706878832786411213334--698------------------178301
Q gi|254780313|r   58 INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP--ILG------------------VKFFKF  117 (227)
Q Consensus        58 Id~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~--i~g------------------v~~~~g  117 (227)
                      |....-..+||+.|.|==.+.||++--++.      .++.|+|-||.-+.-  -.|                  +..+.+
T Consensus       199 i~AN~Amv~pGdivyDPFVGTGslLvsaa~------FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~  272 (421)
T KOG2671         199 IMANQAMVKPGDIVYDPFVGTGSLLVSAAH------FGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTA  272 (421)
T ss_pred             HHHHHHCCCCCCEEECCCCCCCCEEEEHHH------HCCEEECCCCCHHEEECCCCCCCCHHHHHHHHCCCCHHHHEEEE
T ss_conf             875553067998874476566742666223------06356412453120113457774266768774775320320451


Q ss_pred             CCCHHHHHHHHHHHCCCCCCEEEECCC------HHHCC-CC---------------CCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             122079999999731388748975320------21102-22---------------101578898999889876411487
Q gi|254780313|r  118 DFLDLDSWEFIRQAIGGNPDLVLSDMA------YPTIG-HR---------------KIDHLRTMSLCEAATFFALEMLNI  175 (227)
Q Consensus       118 Di~~~~~~~~i~~~l~~~~DlVlSDma------pn~SG-~~---------------~~D~~~~~~L~~~al~~A~~~Lk~  175 (227)
                      |++++.-+.      +-.+|.|+||--      ...+| ..               ...++....|....|.++.+.|.-
T Consensus       273 D~sn~~~rs------n~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~  346 (421)
T KOG2671         273 DFSNPPLRS------NLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVD  346 (421)
T ss_pred             CCCCCCHHH------CCEEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf             056763010------32333787279811456666541457655752124335577644667999975088763766302


Q ss_pred             CCEEEEEE
Q ss_conf             74699993
Q gi|254780313|r  176 GGDFLVKT  183 (227)
Q Consensus       176 gG~fV~K~  183 (227)
                      ||-+|+=+
T Consensus       347 ggrlv~w~  354 (421)
T KOG2671         347 GGRLVFWL  354 (421)
T ss_pred             CCEEEEEC
T ss_conf             85589834


No 170
>pfam05206 TRM13 Methyltransferase TRM13. This is a family of eukaryotic proteins which are responsible for 2'-O-methylation of tRNA at position 4. TRM13 shows no sequence similarity to other known methyltransferases.
Probab=93.64  E-value=0.5  Score=26.88  Aligned_cols=101  Identities=24%  Similarity=0.323  Sum_probs=60.7

Q ss_pred             HHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCC-CCEEEEEECCCC----C------CCCCCCEEEECCCCHHH
Q ss_conf             999986458313796788850455306899999706878-832786411213----3------34698178301122079
Q gi|254780313|r   55 LLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA-NNTRVVAIDILD----M------EPILGVKFFKFDFLDLD  123 (227)
Q Consensus        55 L~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~-~~~~VigVDl~~----~------~~i~gv~~~~gDi~~~~  123 (227)
                      |+..-++.+++.+...+|+.||+-|..|.++.+...... ....++-||-..    +      ++.+-+.-++.||.|.+
T Consensus         6 lig~le~~~ll~~~~~~vEfGAGrG~LS~~v~~~l~~~~~~~~~~~LIDR~s~R~K~D~k~r~~~~~~~~R~riDI~DL~   85 (256)
T pfam05206         6 LIGNLEELGLLSPSTAYVEFGAGKGELSRYLNQCLLEDQLSNPGFVLIDRASNRLKADRKIRKDESPPIKRLRIDIKDLN   85 (256)
T ss_pred             HHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHCCCCCCEEEEEEEHHHCC
T ss_conf             99999973998999889997896469999999985234566763899988887754311021378882589995325457


Q ss_pred             HHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf             99999973138874897532021102221015788989998898764114
Q gi|254780313|r  124 SWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEML  173 (227)
Q Consensus       124 ~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~L  173 (227)
                      . ..+........-++                 .+-.||-.|.++++++|
T Consensus        86 L-~~v~~~~~~~~~va-----------------i~KHLCG~ATDLtLrcl  117 (256)
T pfam05206        86 L-DKLLSLLKGKPVVA-----------------VSKHLCGAATDLTLRCL  117 (256)
T ss_pred             H-HHHHHHCCCCCEEE-----------------EECCCCCCHHHHHHHHH
T ss_conf             7-66443106797799-----------------94113663475999987


No 171
>KOG2360 consensus
Probab=93.49  E-value=0.049  Score=33.19  Aligned_cols=147  Identities=16%  Similarity=0.117  Sum_probs=80.9

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC-----------CCCCCCCEEEECCCCHHHHHHHHHHHCCCC
Q ss_conf             796788850455306899999706878832786411213-----------334698178301122079999999731388
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-----------MEPILGVKFFKFDFLDLDSWEFIRQAIGGN  135 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~-----------~~~i~gv~~~~gDi~~~~~~~~i~~~l~~~  135 (227)
                      +|..|+|.|||||-=+--++....+   .|+|.|+|+..           +.-...+....||++..-+.+.    + ..
T Consensus       213 ~g~~v~d~caapg~KTsH~a~i~~n---~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t~~~~~----~-~~  284 (413)
T KOG2360         213 PGSRVIDTCAAPGNKTSHLAAIMRN---QGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNTATPEK----F-RD  284 (413)
T ss_pred             CCCCEEEECCCCCCCHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC----C-CC
T ss_conf             9882355414665321129988622---48721323416889999999987178745320144447778100----2-65


Q ss_pred             CCEEEECCCHHHCCC--CC---C-------HHHHHHHHHH---HHHHHHHHCC--CCCCEEEEEEECCCCHHHHHHHHHH
Q ss_conf             748975320211022--21---0-------1578898999---8898764114--8774699993059998999999986
Q gi|254780313|r  136 PDLVLSDMAYPTIGH--RK---I-------DHLRTMSLCE---AATFFALEML--NIGGDFLVKTFQGGTTNDILCLLKK  198 (227)
Q Consensus       136 ~DlVlSDmapn~SG~--~~---~-------D~~~~~~L~~---~al~~A~~~L--k~gG~fV~K~F~G~~~~~l~~~l~~  198 (227)
                      +.-+|.|  |.+||-  ..   .       +..+...|+-   .++..|..+-  +.=-.-.|-+.+++.++-....+..
T Consensus       285 v~~iL~D--pscSgSgm~~r~~~~~~~e~~~~~rL~~L~~fq~~~~~hal~fp~~k~vvystcs~~reene~vv~d~l~~  362 (413)
T KOG2360         285 VTYILVD--PSCSGSGMVSRQDEDPGAETESPERLENLQSFQIRILKHALTFPNLKRLVYSTCSLHREENEQVVQEVLQQ  362 (413)
T ss_pred             EEEEEEC--CCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHEEEECCHHHHHHHHHHHHHHHHH
T ss_conf             0599857--98787765223242267775357999987877999999886077532401102325454415999998751


Q ss_pred             H--CCEEEE--ECCCCCCCCCCEEEEEECC
Q ss_conf             2--584699--7686657558249898307
Q gi|254780313|r  199 H--FQKVIH--VKPVASRAESVEMFLLAKG  224 (227)
Q Consensus       199 ~--F~~V~~--~KP~aSR~~S~E~Ylv~~g  224 (227)
                      .  +..+..  +-|...+-. .|.|-++.+
T Consensus       363 ~p~~~~l~~kK~~p~w~~rg-~~~~~~~e~  391 (413)
T KOG2360         363 NPDAKRLAPKKVLPAWPHRG-LSTFSGAEH  391 (413)
T ss_pred             CHHHHHHHHHHCCHHHHHCC-CCCCCCCCC
T ss_conf             81776633343233455347-754542113


No 172
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=93.00  E-value=0.8  Score=25.61  Aligned_cols=138  Identities=20%  Similarity=0.182  Sum_probs=76.6

Q ss_pred             CEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCC------CCCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf             678885045530689999970687883278641121333------46981783011220799999997313887489753
Q gi|254780313|r   69 RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME------PILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSD  142 (227)
Q Consensus        69 ~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~------~i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSD  142 (227)
                      .+||||-|+.||++.=. +..|   . -.+.++|+.+-.      ..++ ..+.+||.+.+..+     +.+.+|+++. 
T Consensus         1 l~v~dLFsG~GG~s~Gl-~~aG---~-~~~~a~e~d~~a~~t~~~N~~~-~~~~~Di~~~~~~~-----~~~~vDll~g-   68 (275)
T cd00315           1 LRVIDLFAGIGGFRLGL-EKAG---F-EIVAANEIDKSAAETYEANFPN-KLIEGDITKIDEKD-----FIPDIDLLTG-   68 (275)
T ss_pred             CCEEEECCCCCHHHHHH-HHCC---C-EEEEEEECCHHHHHHHHHHCCC-CCCCCCHHHCCCCC-----CCCCCCEEEE-
T ss_conf             95999767807899999-9869---9-8999996899999999988799-95258864465321-----3788788986-


Q ss_pred             CCHHHCCCC------CCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE-------EECCCCHHHHHHHHHHHCCEEEEECCC
Q ss_conf             202110222------1015788989998898764114877469999-------305999899999998625846997686
Q gi|254780313|r  143 MAYPTIGHR------KIDHLRTMSLCEAATFFALEMLNIGGDFLVK-------TFQGGTTNDILCLLKKHFQKVIHVKPV  209 (227)
Q Consensus       143 mapn~SG~~------~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K-------~F~G~~~~~l~~~l~~~F~~V~~~KP~  209 (227)
                       +|.|.|..      ..+..+. .|....+.+. ..++|. .|++-       .-.+..+..++..+...-..+....-.
T Consensus        69 -gpPCQ~fS~ag~~~~~~d~r~-~L~~~~~~~i-~~~~P~-~~~~ENV~~~~~~~~~~~~~~i~~~l~~~GY~~~~~vl~  144 (275)
T cd00315          69 -GFPCQPFSIAGKRKGFEDTRG-TLFFEIIRIL-KEKKPK-YFLLENVKGLLTHDNGNTLKVILNTLEELGYNVYWKLLN  144 (275)
T ss_pred             -CCCCCCCCCCCCCCCCCCCCC-HHHHHHHHHH-HHHCCC-EEEHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEEEEC
T ss_conf             -899987354786388656401-6899999999-876885-882763766875235607899999998679820277867


Q ss_pred             CCC---CCCCE-EEEEE
Q ss_conf             657---55824-98983
Q gi|254780313|r  210 ASR---AESVE-MFLLA  222 (227)
Q Consensus       210 aSR---~~S~E-~Ylv~  222 (227)
                      |+.   +.+++ +|+||
T Consensus       145 a~~~GvPQ~R~R~fiva  161 (275)
T cd00315         145 ASDYGVPQNRERVFIIG  161 (275)
T ss_pred             HHHCCCCCCCCEEEEEE
T ss_conf             99979997761899998


No 173
>pfam06962 rRNA_methylase Putative rRNA methylase. This family contains a number of putative rRNA methylases. Note that many family members are hypothetical proteins.
Probab=92.75  E-value=0.86  Score=25.40  Aligned_cols=83  Identities=23%  Similarity=0.216  Sum_probs=52.5

Q ss_pred             EEEECCCCC------------CCCCCCEEEECCCCHHHHHHHHHHHCC-CCCCEEEECCCHHHCCCCCCHHHHHHHHHHH
Q ss_conf             864112133------------346981783011220799999997313-8874897532021102221015788989998
Q gi|254780313|r   98 VVAIDILDM------------EPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEA  164 (227)
Q Consensus        98 VigVDl~~~------------~~i~gv~~~~gDi~~~~~~~~i~~~l~-~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~  164 (227)
                      |+|+|+|+-            ....+|.+++.+      ++.+.+++. +++|+++=-.+-=-.|.+.+-..  -+=...
T Consensus         2 V~aFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~~------He~l~~~v~~~~i~~~~FNLGYLPggDk~i~T~--~~tTi~   73 (140)
T pfam06962         2 VYAFDIQEEALENTKEKLEQAGLSEIVELILDS------HENIDEYIPEGPVKAAIFNLGYLPGGDKSITTK--PDTTLE   73 (140)
T ss_pred             EEEEECHHHHHHHHHHHHHHCCCCCCEEEEECC------HHHHHHHCCCCCCCEEEEECCCCCCCCCCCEEC--CHHHHH
T ss_conf             579960999999999999965987568999779------888986376467668999667688999875877--720999


Q ss_pred             HHHHHHHCCCCCCEEEEEEECCCC
Q ss_conf             898764114877469999305999
Q gi|254780313|r  165 ATFFALEMLNIGGDFLVKTFQGGT  188 (227)
Q Consensus       165 al~~A~~~Lk~gG~fV~K~F~G~~  188 (227)
                      ||+-|+..|++||-+++=++.|.+
T Consensus        74 Al~~al~lL~~gG~i~i~~Y~GH~   97 (140)
T pfam06962        74 AIKKLLELLKPGGLIILVIYHGHE   97 (140)
T ss_pred             HHHHHHHHHCCCCEEEEEEECCCC
T ss_conf             999999963669899999979999


No 174
>KOG1661 consensus
Probab=92.71  E-value=0.04  Score=33.78  Aligned_cols=140  Identities=24%  Similarity=0.279  Sum_probs=70.0

Q ss_pred             CCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCC-CCEEEECCCCHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             831379678885045530689999970687883278641121333469-8178301122079999999731388748975
Q gi|254780313|r   63 QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPIL-GVKFFKFDFLDLDSWEFIRQAIGGNPDLVLS  141 (227)
Q Consensus        63 ~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~i~-gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlS  141 (227)
                      ..++||.+.||+|++-|--|--....++.+|.  .++|||+.+- -++ -...+.-||++.+....+.   .+..-+|+-
T Consensus        78 ~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~--~~~GIEh~~e-LVe~Sk~nl~k~i~~~e~~~~~~---~~~l~ivvG  151 (237)
T KOG1661          78 DHLQPGASFLDVGSGSGYLTACFARMVGATGG--NVHGIEHIPE-LVEYSKKNLDKDITTSESSSKLK---RGELSIVVG  151 (237)
T ss_pred             HHHCCCCCEEECCCCCCHHHHHHHHHHCCCCC--CCCCHHHHHH-HHHHHHHHHHHHCCCCHHHHHHC---CCCEEEEEC
T ss_conf             86234731013378740899999999457776--6514441599-99999987776504730455641---486479967


Q ss_pred             CCCHHHCCCCCCHH----HHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHH---------HHHHHHHCCEEEEECC
Q ss_conf             32021102221015----7889899988987641148774699993059998999---------9999862584699768
Q gi|254780313|r  142 DMAYPTIGHRKIDH----LRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI---------LCLLKKHFQKVIHVKP  208 (227)
Q Consensus       142 Dmapn~SG~~~~D~----~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l---------~~~l~~~F~~V~~~KP  208 (227)
                      |+-.-.+-..-.|.    +..-++    ..-....|++||-+|+=+-+-..++.+         ...++..|. |. +-|
T Consensus       152 Dgr~g~~e~a~YDaIhvGAaa~~~----pq~l~dqL~~gGrllip~~~~~~~q~~~~~dk~~~gki~~~~~f~-v~-yvP  225 (237)
T KOG1661         152 DGRKGYAEQAPYDAIHVGAAASEL----PQELLDQLKPGGRLLIPVGQDGGTQYLRQIDKNEDGKIKLRTLFS-VR-YVP  225 (237)
T ss_pred             CCCCCCCCCCCCCEEEECCCCCCC----HHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCCCCEEEEEEEC-EE-EEE
T ss_conf             762347756876657876676224----799998634387289861146730677760454567402357501-27-886


Q ss_pred             CCCCCC
Q ss_conf             665755
Q gi|254780313|r  209 VASRAE  214 (227)
Q Consensus       209 ~aSR~~  214 (227)
                      ..||.+
T Consensus       226 lt~~~~  231 (237)
T KOG1661         226 LTSRES  231 (237)
T ss_pred             CCCCCC
T ss_conf             666555


No 175
>KOG1541 consensus
Probab=92.44  E-value=0.62  Score=26.32  Aligned_cols=137  Identities=16%  Similarity=0.159  Sum_probs=67.0

Q ss_pred             CCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC-C------CCCCCCEEEECCCCHHHHHHHHHHHCCCCCCEEE
Q ss_conf             96788850455306899999706878832786411213-3------3469817830112207999999973138874897
Q gi|254780313|r   68 NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-M------EPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVL  140 (227)
Q Consensus        68 g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~-~------~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVl  140 (227)
                      ..-+||+||+.|==.++..+    .|  -..+|||+.| |      ..++ -.++.+|+...      ..+-.|.||-||
T Consensus        51 ~~~iLDIGCGsGLSg~vL~~----~G--h~wiGvDiSpsML~~a~~~e~e-gdlil~DMG~G------lpfrpGtFDg~I  117 (270)
T KOG1541          51 SGLILDIGCGSGLSGSVLSD----SG--HQWIGVDISPSMLEQAVERELE-GDLILCDMGEG------LPFRPGTFDGVI  117 (270)
T ss_pred             CCEEEEECCCCCCCHHEECC----CC--CEEEEECCCHHHHHHHHHHHHH-CCEEEEECCCC------CCCCCCCCCEEE
T ss_conf             71799834577743200216----89--5588622898999999976640-47663124788------788997412478


Q ss_pred             ECCCHHHC--CCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCH-HHH--HHHHHHHCCE-EEEECCCCCCCC
Q ss_conf             53202110--22210157889899988987641148774699993059998-999--9999862584-699768665755
Q gi|254780313|r  141 SDMAYPTI--GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT-NDI--LCLLKKHFQK-VIHVKPVASRAE  214 (227)
Q Consensus       141 SDmapn~S--G~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~-~~l--~~~l~~~F~~-V~~~KP~aSR~~  214 (227)
                      |=-|..--  -+++.++.+.--++.  ..-...+|+.|+.+|.-++--.+. .+.  -..++.-|.- +.+--|.+.|. 
T Consensus       118 SISAvQWLcnA~~s~~~P~~Rl~~F--F~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~aGF~GGlvVd~Pes~k~-  194 (270)
T KOG1541         118 SISAVQWLCNADKSLHVPKKRLLRF--FGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKAGFGGGLVVDWPESTKN-  194 (270)
T ss_pred             EEEEEEEECCCCCCCCCHHHHHHHH--HHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCC-
T ss_conf             8620321014684446738999998--6645321036861588852454679999999988613478436646110134-


Q ss_pred             CCEEEEE
Q ss_conf             8249898
Q gi|254780313|r  215 SVEMFLL  221 (227)
Q Consensus       215 S~E~Ylv  221 (227)
                       ...|+|
T Consensus       195 -kK~yLV  200 (270)
T KOG1541         195 -KKYYLV  200 (270)
T ss_pred             -CEEEEE
T ss_conf             -305899


No 176
>pfam05185 PRMT5 PRMT5 arginine-N-methyltransferase. The human homologue of yeast Skb1 (Shk1 kinase-binding protein 1) is PRMT5, an arginine-N-methyltransferase. These proteins appear to be key mitotic regulators. They play a role in Jak signalling in higher eukaryotes.
Probab=92.41  E-value=0.39  Score=27.53  Aligned_cols=99  Identities=14%  Similarity=0.135  Sum_probs=62.3

Q ss_pred             CEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC--------C-CC--C-CCCEEEECCCCHHHHHHHHHHHCCCCC
Q ss_conf             6788850455306899999706878832786411213--------3-34--6-981783011220799999997313887
Q gi|254780313|r   69 RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD--------M-EP--I-LGVKFFKFDFLDLDSWEFIRQAIGGNP  136 (227)
Q Consensus        69 ~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~--------~-~~--i-~gv~~~~gDi~~~~~~~~i~~~l~~~~  136 (227)
                      -.|+=+||+-|.--+-+.+-....+.+.+|+||.=.|        . ..  = ..|+.+.+|+.+-+        ...++
T Consensus       188 ~vI~VvGAGRGPLV~~~l~A~~~~~~~v~i~AVEKNpnA~vtL~~r~n~~~W~~~V~ii~~DMR~w~--------~p~k~  259 (447)
T pfam05185       188 LVILVVGAGRGPLVDRALRAAEETGRKVKIYAVEKNPNAVVTLQKRVNFEEWGDKVTLISSDMREWK--------GPEKA  259 (447)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCHHCCC--------CCCCC
T ss_conf             6999985896489999999999819966999995687799999998505431780699908000579--------98773


Q ss_pred             CEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf             489753202110222101578898999889876411487746999930
Q gi|254780313|r  137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF  184 (227)
Q Consensus       137 DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F  184 (227)
                      |+|+|..-=.         ..-.||+=.+|+-|.++|++.|.++=--+
T Consensus       260 Di~VSELLGS---------FGDNELSPECLdg~q~~lk~~gIsIP~sY  298 (447)
T pfam05185       260 DILVSELLGS---------FGDNELSPECLDGAQRFLKPDGISIPQSY  298 (447)
T ss_pred             CEEEEECCCC---------CCCCCCCHHHHHHHHHHCCCCCEEECHHH
T ss_conf             5897521166---------66655797787789974689846826213


No 177
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=92.34  E-value=0.77  Score=25.70  Aligned_cols=35  Identities=20%  Similarity=0.370  Sum_probs=29.8

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEEC
Q ss_conf             13796788850455306899999706878832786411
Q gi|254780313|r   65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID  102 (227)
Q Consensus        65 ~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVD  102 (227)
                      ++||++|+||=-+-|-||...+..++++|   .|.++-
T Consensus        46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G---~Vy~~~   80 (238)
T COG4798          46 LKPGATVIDLIPGGGYFTRIFSPAVGPKG---KVYAYV   80 (238)
T ss_pred             CCCCCEEEEEECCCCCHHHHHCHHCCCCE---EEEEEC
T ss_conf             68998799983488507444110028750---598856


No 178
>PRK09422 alcohol dehydrogenase; Provisional
Probab=92.27  E-value=1  Score=25.01  Aligned_cols=112  Identities=18%  Similarity=0.186  Sum_probs=55.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCC----CCCCCEEEECCCCH
Q ss_conf             84479999999998645831379678885045530689999970687883278641121333----46981783011220
Q gi|254780313|r   46 GWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME----PILGVKFFKFDFLD  121 (227)
Q Consensus        46 gyrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~----~i~gv~~~~gDi~~  121 (227)
                      .--.=.+|..++.    .-+++|++||=.|+++.|-.  +.+..... ...+|+++|..+-.    .--|+..+-..-..
T Consensus       145 ~~~~~t~~~al~~----~~~~~G~~VlV~GaGgvG~~--aiq~ak~~-~g~~Vi~~~~~~~k~~~a~~lGad~vi~~~~~  217 (338)
T PRK09422        145 TCAGVTTYKAIKV----SGIKPGQWIAIYGAGGLGNL--ALQYAKNV-FNAKVIAVDINDDKLALAKEVGADLTINSKRV  217 (338)
T ss_pred             CHHHHHHHHHHHH----HCCCCCCEEEEECCCHHHHH--HHHHHHHH-CCCEEEEEECCHHHHHHHHHCCCCEEECCCCC
T ss_conf             3046768899998----48999988999688689999--99999980-89869999899999999997299899818874


Q ss_pred             HHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf             7999999973138874897532021102221015788989998898764114877469999
Q gi|254780313|r  122 LDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK  182 (227)
Q Consensus       122 ~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K  182 (227)
                      .+..+.+.... +.+|.++-|..    +             ..++.-+...|++||++|+=
T Consensus       218 ~~~~~~~~~~~-gg~~~~v~~~~----~-------------~~~~~~~~~~l~~gG~~v~v  260 (338)
T PRK09422        218 EDVAKIIQEKT-GGAHAAVVTAV----A-------------KAAFNQAVDAVRAGGRVVAV  260 (338)
T ss_pred             CCHHHHHHHHC-CCCCEEEEECC----C-------------HHHHHHHHHHHHCCCEEEEE
T ss_conf             34999999950-99776999678----7-------------89999999981169999998


No 179
>PRK10083 putative dehydrogenase; Provisional
Probab=92.11  E-value=0.72  Score=25.89  Aligned_cols=99  Identities=17%  Similarity=0.210  Sum_probs=53.9

Q ss_pred             CCCCCEEEEEECCCCHHH--HHHHHHHCCCCCCEEEEEECCCCCC----CCCCCEEEECCCCHHHHHHHHHHHCCCCCCE
Q ss_conf             137967888504553068--9999970687883278641121333----4698178301122079999999731388748
Q gi|254780313|r   65 LQSNRRIVDLGSSPGSWS--QVAARITGSNANNTRVVAIDILDME----PILGVKFFKFDFLDLDSWEFIRQAIGGNPDL  138 (227)
Q Consensus        65 ~k~g~~VlDLGaaPGgWs--Qva~~~~~~~~~~~~VigVDl~~~~----~i~gv~~~~gDi~~~~~~~~i~~~l~~~~Dl  138 (227)
                      +++|++||=+|++|-|-+  |.+....+    ...|+++|..+-.    .--|+..+- |-.+.+..+.+.. .+..+|+
T Consensus       158 ~~~g~~VlV~G~G~iGl~~~~~~~~~~g----a~~Vi~~d~~~~rl~~A~~~GAd~vi-~~~~~~~~~~~~~-~G~~~dv  231 (339)
T PRK10083        158 PTEQDVALIYGAGPVGLTIVQVLKGVYG----VKNVIVADRIDERLALAKESGADWVI-NNAQESLAEALAE-KGVKPTL  231 (339)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHHCC----CCEEEEECCCHHHHHHHHHCCCCEEE-CCCCCCHHHHHHH-CCCCCCE
T ss_conf             9999889995876599999999998569----97899937989999999971998998-4887669999985-3999619


Q ss_pred             EEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECC
Q ss_conf             975320211022210157889899988987641148774699993059
Q gi|254780313|r  139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG  186 (227)
Q Consensus       139 VlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G  186 (227)
                      |+ |    ++|..            .++..|..++++||.+++==+.+
T Consensus       232 vi-d----~~g~~------------~~~~~a~~~~~~gG~iv~~G~~~  262 (339)
T PRK10083        232 IF-D----AACHP------------SILEEAVTLASPAARIVLMGFSS  262 (339)
T ss_pred             EE-E----CCCCH------------HHHHHHHHHHHCCEEEEEEECCC
T ss_conf             99-6----66688------------99999999851880999992589


No 180
>PRK04148 hypothetical protein; Provisional
Probab=92.10  E-value=0.73  Score=25.88  Aligned_cols=104  Identities=23%  Similarity=0.268  Sum_probs=70.0

Q ss_pred             HHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCC----CCCCCEEEECCCCHHHHHHHHHHHCC
Q ss_conf             98645831379678885045530689999970687883278641121333----46981783011220799999997313
Q gi|254780313|r   58 INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME----PILGVKFFKFDFLDLDSWEFIRQAIG  133 (227)
Q Consensus        58 Id~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~----~i~gv~~~~gDi~~~~~~~~i~~~l~  133 (227)
                      |.+.|.-. ++..|+++|  =|....+|..+-. .  +..|+++|+.+..    ...|+.++..|+++++..     .. 
T Consensus         8 I~~~y~~~-~~~kIvEvG--IGf~~~vA~~L~e-~--g~dv~~~Din~~aV~~a~~~Gl~~v~DDif~P~l~-----iY-   75 (135)
T PRK04148          8 IARNYPHL-KNGKIAELG--IGFYFKVAKKLKE-S--GFDVIVIDINKKAVEKAKKLGLNAFVDDIFNPNLE-----IY-   75 (135)
T ss_pred             HHHHCCCC-CCCEEEEEE--CCCCHHHHHHHHH-C--CCCEEEEECCHHHHHHHHHCCCCEEECCCCCCCHH-----HH-
T ss_conf             99854211-287389992--3666789999987-4--99889995765543221232876375158899888-----85-


Q ss_pred             CCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCH
Q ss_conf             88748975320211022210157889899988987641148774699993059998
Q gi|254780313|r  134 GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT  189 (227)
Q Consensus       134 ~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~  189 (227)
                      ..+|+|-|==-|             -+|....+++|.++   |..+++|-|.|+..
T Consensus        76 ~~a~lIYSIRPp-------------~Elq~~il~lakkv---~~dliI~PL~~E~~  115 (135)
T PRK04148         76 KNAKLIYSIRPP-------------RDLQPFILELAKKL---NCPLYIKPLSGEEP  115 (135)
T ss_pred             CCCCEEEEECCC-------------HHHHHHHHHHHHHC---CCCEEEECCCCCCC
T ss_conf             178879981898-------------78889999999975---99899970788876


No 181
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=91.52  E-value=1.2  Score=24.49  Aligned_cols=126  Identities=15%  Similarity=0.207  Sum_probs=61.8

Q ss_pred             CHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCH--HHH--HHHHHHCCCCCCEEEEEECCCC---------------CC
Q ss_conf             4479999999998645831379678885045530--689--9999706878832786411213---------------33
Q gi|254780313|r   47 WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS--WSQ--VAARITGSNANNTRVVAIDILD---------------ME  107 (227)
Q Consensus        47 yrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGg--WsQ--va~~~~~~~~~~~~VigVDl~~---------------~~  107 (227)
                      ||-+..|.+++=..+-  -...-+|.--||+-|-  ||-  .+.+..+....+.+|+|.||.+               +.
T Consensus        97 FRe~~~F~~L~~~~~~--~~~~lRIWSAgCSTGEEpYSiAm~l~E~~~~~~~~~~I~aTDIs~~~L~~Ar~GiY~~~~~~  174 (287)
T PRK10611         97 FREAHHFPLLAEHARR--RSGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRLEELK  174 (287)
T ss_pred             ECCCHHHHHHHHHHHH--CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHCCCCCHHHHH
T ss_conf             4583787999999984--58975899767788723999999999973237777079999798889999980898889984


Q ss_pred             CCC----CCEEEECC--C-----CHHHHHHHH--------HH--HCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf             469----81783011--2-----207999999--------97--313887489753202110222101578898999889
Q gi|254780313|r  108 PIL----GVKFFKFD--F-----LDLDSWEFI--------RQ--AIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAAT  166 (227)
Q Consensus       108 ~i~----gv~~~~gD--i-----~~~~~~~~i--------~~--~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al  166 (227)
                      .++    .-.|.+++  .     ..++....+        ..  ...+++|+|.|=   |+--  ..|..    .-..++
T Consensus       175 ~~p~~~~~ryF~~~~~~~~g~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fDlIfCR---NVlI--YFd~~----~q~~vl  245 (287)
T PRK10611        175 TLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQSLNLLAKQYTVPGPFDAIFCR---NVMI--YFDKT----TQQEIL  245 (287)
T ss_pred             CCCHHHHHHHEECCCCCCCCEEEECHHHHCCCEEEHHHCCCCCCCCCCCCEEEEEC---CCCC--CCCHH----HHHHHH
T ss_conf             59999995116415787666187457876307771400679988888995199978---4053--67899----999999


Q ss_pred             HHHHHCCCCCCEEEEEE
Q ss_conf             87641148774699993
Q gi|254780313|r  167 FFALEMLNIGGDFLVKT  183 (227)
Q Consensus       167 ~~A~~~Lk~gG~fV~K~  183 (227)
                      ..-...|+|||-+++=-
T Consensus       246 ~~~~~~L~pgG~L~lG~  262 (287)
T PRK10611        246 RRFVPLLKPDGLLFAGH  262 (287)
T ss_pred             HHHHHHHCCCCEEEEEC
T ss_conf             99999868992899838


No 182
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=91.32  E-value=0.85  Score=25.44  Aligned_cols=113  Identities=13%  Similarity=0.099  Sum_probs=64.9

Q ss_pred             CCCCCC--CEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------C--CCCCCCEEEECCCCHHHHHHHHH
Q ss_conf             831379--6788850455306899999706878832786411213---------3--34698178301122079999999
Q gi|254780313|r   63 QILQSN--RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------M--EPILGVKFFKFDFLDLDSWEFIR  129 (227)
Q Consensus        63 ~l~k~g--~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~--~~i~gv~~~~gDi~~~~~~~~i~  129 (227)
                      .+|...  -.+||+||+=|.|+--.++..+..    ..+||++..         +  ..++|+..+.+|....     +.
T Consensus        42 ~~f~~~~~pi~lEIGfG~G~~l~~~A~~nP~~----nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~-----l~  112 (227)
T COG0220          42 ALFGNNNAPIVLEIGFGMGEFLVEMAKKNPEK----NFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEV-----LD  112 (227)
T ss_pred             HHHCCCCCCEEEEECCCCCHHHHHHHHHCCCC----CEEEEEEEHHHHHHHHHHHHHCCCCCEEEEECCHHHH-----HH
T ss_conf             98388889669996888987899999878987----7899997348999999999982998469980779999-----97


Q ss_pred             HHCCC-C---CCEEEECCCHHHCCCCCCHHH-HHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHH
Q ss_conf             73138-8---748975320211022210157-88989998898764114877469999305999899
Q gi|254780313|r  130 QAIGG-N---PDLVLSDMAYPTIGHRKIDHL-RTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND  191 (227)
Q Consensus       130 ~~l~~-~---~DlVlSDmapn~SG~~~~D~~-~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~  191 (227)
                      .+..+ .   ..+--+|==|..     .-|- |.++  ..-|......|++||.+-+++=.-..++.
T Consensus       113 ~~~~~~sl~~I~i~FPDPWpKk-----RH~KRRl~~--~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~  172 (227)
T COG0220         113 YLIPDGSLDKIYINFPDPWPKK-----RHHKRRLTQ--PEFLKLYARKLKPGGVLHFATDNEEYFEW  172 (227)
T ss_pred             HCCCCCCEEEEEEECCCCCCCC-----CCCCCCCCC--HHHHHHHHHHCCCCCEEEEEECCHHHHHH
T ss_conf             3589885657999799999876-----643321478--89999999972689789997267999999


No 183
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA; InterPro: IPR001566   This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA .; GO: 0003723 RNA binding, 0008173 RNA methyltransferase activity, 0006396 RNA processing.
Probab=91.30  E-value=0.35  Score=27.84  Aligned_cols=85  Identities=25%  Similarity=0.324  Sum_probs=59.3

Q ss_pred             HHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC-----------CCCCCCCEEEECCCCHH
Q ss_conf             9999986458313796788850455306899999706878832786411213-----------33469817830112207
Q gi|254780313|r   54 KLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-----------MEPILGVKFFKFDFLDL  122 (227)
Q Consensus        54 KL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~-----------~~~i~gv~~~~gDi~~~  122 (227)
                      +|..=-.++==+.+.+.|||+=|+=|-+|-.+++.+.      .|+|||+.+           ..-+.||+|++|++.+.
T Consensus       281 ~l~~~a~~~l~Lqg~e~V~DayCG~GtftLpLA~qak------~v~G~E~v~e~v~~a~~NAe~Ng~~N~~F~~g~~E~~  354 (434)
T TIGR00479       281 KLVDRALEALELQGEEKVVDAYCGVGTFTLPLAKQAK------SVVGVEVVPESVEDAKRNAELNGIANVEFLAGTLETV  354 (434)
T ss_pred             HHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCC------EEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf             9999999997159865578631575520044440121------8888714376789998888860353201333123211


Q ss_pred             HHHHHHHHHCCCCCCEEEECCCHHHCC
Q ss_conf             999999973138874897532021102
Q gi|254780313|r  123 DSWEFIRQAIGGNPDLVLSDMAYPTIG  149 (227)
Q Consensus       123 ~~~~~i~~~l~~~~DlVlSDmapn~SG  149 (227)
                        .-+... -+..+|+||=|  |.-+|
T Consensus       355 --~p~~~~-e~~~~D~~llD--PPR~G  376 (434)
T TIGR00479       355 --LPKQPW-EGISPDVVLLD--PPRKG  376 (434)
T ss_pred             --CCCCCC-CCCCCCEEEEC--CCCCC
T ss_conf             --014422-26778988888--88987


No 184
>KOG3191 consensus
Probab=91.18  E-value=1.3  Score=24.28  Aligned_cols=145  Identities=19%  Similarity=0.205  Sum_probs=81.5

Q ss_pred             CCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCC--------CC--CCEEEECCCCHHHHHHHHHHHCCCCCC
Q ss_conf             96788850455306899999706878832786411213334--------69--817830112207999999973138874
Q gi|254780313|r   68 NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP--------IL--GVKFFKFDFLDLDSWEFIRQAIGGNPD  137 (227)
Q Consensus        68 g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~--------i~--gv~~~~gDi~~~~~~~~i~~~l~~~~D  137 (227)
                      -..++++||+-|--|...++.+++   +...++.||+|..-        ..  ++..++.|+.+.     |+.   +++|
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~---~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~-----l~~---~~VD  112 (209)
T KOG3191          44 PEICLEIGCGSGVVSTFLASVIGP---QALYLATDINPEALEATLETARCNRVHIDVVRTDLLSG-----LRN---ESVD  112 (209)
T ss_pred             CEEEEEECCCCCHHHHHHHHHCCC---CCEEEEECCCHHHHHHHHHHHHHCCCCCCEEEHHHHHH-----HCC---CCCC
T ss_conf             605899348846599999974177---71699954998999887999985577520565257766-----332---7730


Q ss_pred             EEEECCCH-HHCCCCCCHHHHH---------HHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHCCEEEEEC
Q ss_conf             89753202-1102221015788---------9899988987641148774699993059998999999986258469976
Q gi|254780313|r  138 LVLSDMAY-PTIGHRKIDHLRT---------MSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK  207 (227)
Q Consensus       138 lVlSDmap-n~SG~~~~D~~~~---------~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~~~F~~V~~~K  207 (227)
                      +++=.=-- .++-....|+...         .+.....+......|.|.|.|.+=......-+++++.++..=-.+.++ 
T Consensus       113 vLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~g~~~~~~-  191 (209)
T KOG3191         113 VLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKKGYGVRIA-  191 (209)
T ss_pred             EEEECCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEHHHCCHHHHHHHHHHCCCCEEEE-
T ss_conf             8997899676985442067788887457541789998876404442867437763013059799999874336530688-


Q ss_pred             CCCCCCCCCEEEEEECCCC
Q ss_conf             8665755824989830755
Q gi|254780313|r  208 PVASRAESVEMFLLAKGFR  226 (227)
Q Consensus       208 P~aSR~~S~E~Ylv~~gfK  226 (227)
                        -.|+.+.|.-.|-+..|
T Consensus       192 --~~Rk~~~E~l~ilkf~r  208 (209)
T KOG3191         192 --MQRKAGGETLSILKFTR  208 (209)
T ss_pred             --EEEECCCCEEEEEEEEE
T ss_conf             --88744774278999985


No 185
>TIGR00182 plsX fatty acid/phospholipid synthesis protein PlsX; InterPro: IPR003664 The plsX gene is part of the bacterial fab gene cluster which encodes several key fatty acid biosynthetic enzymes . The plsX gene encodes a poorly understood enzyme of phospholipid metabolism .; GO: 0003824 catalytic activity, 0006633 fatty acid biosynthetic process.
Probab=91.05  E-value=0.45  Score=27.20  Aligned_cols=73  Identities=23%  Similarity=0.391  Sum_probs=39.3

Q ss_pred             CCEEEEEECC----CCHHHHHHHHHHCCCCCCEEEEEEC-----CCCCCCCCCCEEEECCCCHHHHHHHHH---------
Q ss_conf             9678885045----5306899999706878832786411-----213334698178301122079999999---------
Q gi|254780313|r   68 NRRIVDLGSS----PGSWSQVAARITGSNANNTRVVAID-----ILDMEPILGVKFFKFDFLDLDSWEFIR---------  129 (227)
Q Consensus        68 g~~VlDLGaa----PGgWsQva~~~~~~~~~~~~VigVD-----l~~~~~i~gv~~~~gDi~~~~~~~~i~---------  129 (227)
                      ...+||+||-    |=--.|||.  +|.- .--.|+++|     |+.+    |-.-.+|.-...++++.++         
T Consensus       138 ~~~~LDvGAN~dc~p~~L~~fAl--MG~v-y~~~v~~~~sPkVgLLNi----GeE~~KG~~l~~~t~~~Lk~~~~inF~G  210 (344)
T TIGR00182       138 KFVLLDVGANVDCKPKYLVQFAL--MGSV-YAKKVLGVDSPKVGLLNI----GEEDNKGNDLVKETFKLLKEDPNINFIG  210 (344)
T ss_pred             EEEEEECCCCCCCCCCHHHHHHH--HHHH-HHHHCCCCCCCCEEECCC----CCCCHHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf             26998555675788432334410--1332-111100058980562357----6500213566899999962288776065


Q ss_pred             -----HHCCCCCCEEEECCCHHHCCC
Q ss_conf             -----731388748975320211022
Q gi|254780313|r  130 -----QAIGGNPDLVLSDMAYPTIGH  150 (227)
Q Consensus       130 -----~~l~~~~DlVlSDmapn~SG~  150 (227)
                           +.|.|.+|||+||+   .+||
T Consensus       211 nvE~rdlL~G~~DV~VcDG---F~GN  233 (344)
T TIGR00182       211 NVEARDLLDGVVDVLVCDG---FTGN  233 (344)
T ss_pred             EECHHHHHCCCEEEEEECC---CCCC
T ss_conf             2000543068646998438---4131


No 186
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase; InterPro: IPR005888    The conversion of dTDP-glucose into dTDP-4-keto-6-deoxyglucose by Escherichia coli dTDP-glucose 4,6-dehydratase) takes place in the active site in three steps: dehydrogenation to dTDP-4-ketoglucose, dehydration to dTDP-4-ketoglucose-5,6-ene, and rereduction of C6 to the methyl group. The 4,6-dehydratase makes use of tightly bound NAD^+ as the coenzyme for transiently oxidizing the substrate, activating it for the dehydration step . This and other 4,6-dehydratases catalyze the first committed step in all 6-deoxysugar biosynthetic pathways described to date. Numerous 6-deoxysugars are used in bacterial lipopolysaccharide production as well as in the biosynthesis of a diverse array of secondary metabolites.; GO: 0008460 dTDP-glucose 46-dehydratase activity, 0009225 nucleotide-sugar metabolic process.
Probab=90.96  E-value=0.67  Score=26.10  Aligned_cols=59  Identities=20%  Similarity=0.256  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHCCCCCCEEEEEEC----------CCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEECCC
Q ss_conf             06899999706878832786411----------213334698178301122079999999731388748975320
Q gi|254780313|r   80 SWSQVAARITGSNANNTRVVAID----------ILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA  144 (227)
Q Consensus        80 gWsQva~~~~~~~~~~~~VigVD----------l~~~~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDma  144 (227)
                      .|.-|+.+..+    +..|+=+|          |.+.+..+...|++|||+|.+....+.+.  ..+|+|+.=+|
T Consensus        14 nFvry~~~~~~----D~~v~vlDkLTYAgn~e~L~~l~~~pr~~Fv~GDI~D~~lv~~~~~e--~~~D~VvhFAA   82 (340)
T TIGR01181        14 NFVRYILNEHP----DAEVIVLDKLTYAGNLENLADLEDNPRYRFVKGDIGDRELVDRLLKE--HDPDAVVHFAA   82 (340)
T ss_pred             HHHHHHHHHCC----CCEEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHH--CCCCEEEECCC
T ss_conf             99999997479----95799863544557865552332396615674230228899888400--17677886222


No 187
>TIGR00417 speE spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase   A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (), spermine synthase () and putrescine N-methyltransferase () .   The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain . The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) . ; GO: 0003824 catalytic activity.
Probab=90.77  E-value=0.61  Score=26.35  Aligned_cols=130  Identities=15%  Similarity=0.227  Sum_probs=73.2

Q ss_pred             HCCCCC--CCCEEEEEECCCCHHHHHHHHHHCCC-CCCEEEEEECCC-------CCCCC-------CCCEEEECCCCHHH
Q ss_conf             458313--79678885045530689999970687-883278641121-------33346-------98178301122079
Q gi|254780313|r   61 KHQILQ--SNRRIVDLGSSPGSWSQVAARITGSN-ANNTRVVAIDIL-------DMEPI-------LGVKFFKFDFLDLD  123 (227)
Q Consensus        61 kf~l~k--~g~~VlDLGaaPGgWsQva~~~~~~~-~~~~~VigVDl~-------~~~~i-------~gv~~~~gDi~~~~  123 (227)
                      .--||.  +-..||=+|-+=||-+   ++.+..+ -.....+=||-.       -+..+       |.|...-+|=    
T Consensus        67 HvpL~~H~NPk~VLvIGGGDGG~l---REV~KH~sVE~~~lVdID~~VI~~srkyLP~~~~g~~dderv~~~i~DG----  139 (284)
T TIGR00417        67 HVPLFAHPNPKKVLVIGGGDGGVL---REVVKHKSVEKATLVDIDEKVIELSRKYLPKLAAGSFDDERVDLAIDDG----  139 (284)
T ss_pred             HHHHHCCCCCCEEEEEECCCCCEE---EEEEECCCCCEEEEEECCHHHHHHHHHHCHHHHCCCCCCCEEEEEECCC----
T ss_conf             756536898854789963888468---7887559816799997274789998882612105665888035898251----


Q ss_pred             HHHHHHHH----CCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHH-HHHHHHCCCCCCEEEEE-E----ECCCCHHHHH
Q ss_conf             99999973----1388748975320211022210157889899988-98764114877469999-3----0599989999
Q gi|254780313|r  124 SWEFIRQA----IGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAA-TFFALEMLNIGGDFLVK-T----FQGGTTNDIL  193 (227)
Q Consensus       124 ~~~~i~~~----l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~a-l~~A~~~Lk~gG~fV~K-~----F~G~~~~~l~  193 (227)
                       .+.|++.    ...+|||||+| +++--|-..       .|.... .+.+.+.|+++|.||+= .    ++-+...++.
T Consensus       140 -~~fl~~~Gasdv~~~fDVIIvD-stDPvGPa~-------~LF~~~Fy~~~~~aL~~~Gv~v~Qss~s~~~~~~~~~d~~  210 (284)
T TIGR00417       140 -FKFLRDTGASDVEKKFDVIIVD-STDPVGPAE-------TLFTKEFYELLKKALNEDGVIVAQSSESPWLQLELIKDLK  210 (284)
T ss_pred             -HHHHHHCCCCCCCCCCCEEEEE-CCCCCCCCC-------CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHH
T ss_conf             -7989761522221214479972-778956554-------1021799999998529998899802788432748888788


Q ss_pred             HHHHHH-CCEEEEE
Q ss_conf             999862-5846997
Q gi|254780313|r  194 CLLKKH-FQKVIHV  206 (227)
Q Consensus       194 ~~l~~~-F~~V~~~  206 (227)
                      +.++.. |..+..+
T Consensus       211 r~~~~~~F~~~~~y  224 (284)
T TIGR00417       211 RKVKEVPFPITEYY  224 (284)
T ss_pred             HHHHHCCCCCCEEE
T ss_conf             87752689753046


No 188
>pfam05724 TPMT Thiopurine S-methyltransferase (TPMT). This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulfhydryl compounds, including anticancer and immunosuppressive thiopurines.
Probab=90.75  E-value=1.4  Score=24.02  Aligned_cols=116  Identities=20%  Similarity=0.210  Sum_probs=64.0

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCC-----------C------------CCCCEEEECCCCH
Q ss_conf             1379678885045530689999970687883278641121333-----------4------------6981783011220
Q gi|254780313|r   65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME-----------P------------ILGVKFFKFDFLD  121 (227)
Q Consensus        65 ~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~-----------~------------i~gv~~~~gDi~~  121 (227)
                      ..++.+|+=-||+-|-=..+.++    .  +..|+|||+.+..           |            -.++.+++|||++
T Consensus        20 ~~~~~rvlVPlCGks~D~~wLa~----~--G~~VvGvels~~Av~~ff~e~~~~~~~~~~~~~~~~~~~~i~i~~gD~F~   93 (203)
T pfam05724        20 LPPGLRVLVPLCGKALDMVWLAE----Q--GHFVVGVEISELAVEKFFAEANLSPPITELSGFKEYRAGGIELLCGDFFT   93 (203)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHH----C--CCEEEEEECCHHHHHHHHHHCCCCCCCEECCCCEEECCCCEEEEECCHHC
T ss_conf             99998899968998599999983----8--98489995679999999997378875101366213205864899773213


Q ss_pred             HHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE--EC-----CCCH----H
Q ss_conf             79999999731388748975320211022210157889899988987641148774699993--05-----9998----9
Q gi|254780313|r  122 LDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT--FQ-----GGTT----N  190 (227)
Q Consensus       122 ~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~--F~-----G~~~----~  190 (227)
                      .+..      ..+.||+|.==.|. +    .++..    +=..=......+|++||..+.=.  |.     |.-+    .
T Consensus        94 l~~~------~~g~fD~IyDraal-~----ALpp~----~R~~Ya~~l~~lL~pgg~~lLitl~y~~~~~~GPPfsv~~~  158 (203)
T pfam05724        94 LPRE------ELGKFDLIYDRAAL-C----ALPPE----MRPRYAKQMYELLPPGGEGLLITLDYPQTDHEGPPFSVPAA  158 (203)
T ss_pred             CCHH------HCCCCCEEEEECCE-E----ECCHH----HHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCHH
T ss_conf             7843------46873489970323-5----38989----99999999999718996699999973865579948989999


Q ss_pred             HHHHHHHHHCC
Q ss_conf             99999986258
Q gi|254780313|r  191 DILCLLKKHFQ  201 (227)
Q Consensus       191 ~l~~~l~~~F~  201 (227)
                      ++...+...|+
T Consensus       159 Ev~~lf~~~f~  169 (203)
T pfam05724       159 ELEALFGGGWK  169 (203)
T ss_pred             HHHHHHCCCCE
T ss_conf             99987089856


No 189
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=90.74  E-value=1.4  Score=24.02  Aligned_cols=97  Identities=19%  Similarity=0.191  Sum_probs=56.1

Q ss_pred             CCCEEEEEECCCCH--HHHHHHHHHCCCCCCEEEEEECCCCCC----CCCCCEEEECCCCHHHHHHHHHHHCCC-CCCEE
Q ss_conf             79678885045530--689999970687883278641121333----469817830112207999999973138-87489
Q gi|254780313|r   67 SNRRIVDLGSSPGS--WSQVAARITGSNANNTRVVAIDILDME----PILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLV  139 (227)
Q Consensus        67 ~g~~VlDLGaaPGg--WsQva~~~~~~~~~~~~VigVDl~~~~----~i~gv~~~~gDi~~~~~~~~i~~~l~~-~~DlV  139 (227)
                      .|++||=+|++|-|  ..|++ +..|    -..|+++|..+-.    .--|+... -|..+.+..+.+.+.-++ .+|+|
T Consensus       163 ~g~~VlV~GaG~vGl~~~~~a-k~~G----a~~Vi~~d~~~~kl~~a~~lGa~~~-i~~~~~~~~~~~~~~t~~~G~Dvv  236 (341)
T PRK05396        163 VGEDVLITGAGPIGIMAAAVA-KHVG----ARHVVITDVNEYRLELARKMGATRA-VNVAKEDLRDVMAELGMTEGFDVG  236 (341)
T ss_pred             CCCEEEEECCCCCCHHHHHHH-HHCC----CEEEEEEECCHHHHHHHHHCCCCEE-EECCCHHHHHHHHHHHCCCCCEEE
T ss_conf             888699989975432999999-9849----9289999489999998986499499-968850689999997489997699


Q ss_pred             EECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECC
Q ss_conf             75320211022210157889899988987641148774699993059
Q gi|254780313|r  140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG  186 (227)
Q Consensus       140 lSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G  186 (227)
                      + |    ++|...            ++..+..+|++||.+++==+.+
T Consensus       237 i-d----~~G~~~------------~~~~~~~~l~~gG~vv~~G~~~  266 (341)
T PRK05396        237 L-E----MSGAPS------------AFRQMLDAMNHGGRIAMLGIPP  266 (341)
T ss_pred             E-E----CCCCHH------------HHHHHHHHHHCCCEEEEEECCC
T ss_conf             9-8----789899------------9999999863598999995579


No 190
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=90.24  E-value=1.6  Score=23.74  Aligned_cols=104  Identities=26%  Similarity=0.338  Sum_probs=61.8

Q ss_pred             CCCCCCCEEEEEECCCCHHHHHH-HHHHCCCCCCEEEEEECCCCC-----CCCCCCEEEECCCCHHHHHHHHHHHCCC-C
Q ss_conf             83137967888504553068999-997068788327864112133-----3469817830112207999999973138-8
Q gi|254780313|r   63 QILQSNRRIVDLGSSPGSWSQVA-ARITGSNANNTRVVAIDILDM-----EPILGVKFFKFDFLDLDSWEFIRQAIGG-N  135 (227)
Q Consensus        63 ~l~k~g~~VlDLGaaPGgWsQva-~~~~~~~~~~~~VigVDl~~~-----~~i~gv~~~~gDi~~~~~~~~i~~~l~~-~  135 (227)
                      ...+++.+|+=+||+|=|-+-++ ++..|    -.+|+.+|+.+-     +..-+...+.-.-.+ +....+.+..++ .
T Consensus       164 ~~~~~~~~V~V~GaGpIGLla~~~a~~~G----a~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~-~~~~~~~~~t~g~g  238 (350)
T COG1063         164 AAVRPGGTVVVVGAGPIGLLAIALAKLLG----ASVVIVVDRSPERLELAKEAGGADVVVNPSED-DAGAEILELTGGRG  238 (350)
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHCC----CCEEEEECCCHHHHHHHHHHCCCCEEECCCCH-HHHHHHHHHCCCCC
T ss_conf             45788998999888899999999998769----82799979998999999987797187246301-47889998608987


Q ss_pred             CCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC
Q ss_conf             74897532021102221015788989998898764114877469999305999
Q gi|254780313|r  136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT  188 (227)
Q Consensus       136 ~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~  188 (227)
                      +|+|+     .+||..            .++.-|...+++||+++.-=+-+.+
T Consensus       239 ~D~vi-----e~~G~~------------~~~~~ai~~~r~gG~v~~vGv~~~~  274 (350)
T COG1063         239 ADVVI-----EAVGSP------------PALDQALEALRPGGTVVVVGVYGGE  274 (350)
T ss_pred             CCEEE-----ECCCCH------------HHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf             99999-----998997------------9999999960259899999515886


No 191
>pfam03602 Cons_hypoth95 Conserved hypothetical protein 95.
Probab=90.16  E-value=1.6  Score=23.71  Aligned_cols=99  Identities=23%  Similarity=0.215  Sum_probs=54.0

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CCC--CCCCEEEECCCCHHHHHHHHHHHCCCC
Q ss_conf             796788850455306899999706878832786411213---------334--698178301122079999999731388
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------MEP--ILGVKFFKFDFLDLDSWEFIRQAIGGN  135 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~~--i~gv~~~~gDi~~~~~~~~i~~~l~~~  135 (227)
                      .+.+||||.|+-|+-.-=|..+     ....|+.||...         ++.  +++. .+..|...  .... ......+
T Consensus        43 ~~~~~LDLFaGSGslglEAlSR-----GA~~v~fvE~~~~a~~~i~~N~~~l~~~~~-~~~~~~~~--~~~~-~~~~~~~  113 (181)
T pfam03602        43 GGARVLDLFAGSGALGLEALSR-----GASSVVFVEKDKKAVATLKENLEALGLEGA-VLRMDAAR--ALLR-LAGKGPP  113 (181)
T ss_pred             CCCEEEECCCCCCHHHHHHHHC-----CCCEEEEEECCHHHHHHHHHHHHHHCCCCE-EEECCHHH--HHHH-HCCCCCC
T ss_conf             8987998278726989999976-----998899996999999999999998589977-99810899--9987-5335788


Q ss_pred             CCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHH--HHHCCCCCCEEEEEEECC
Q ss_conf             748975320211022210157889899988987--641148774699993059
Q gi|254780313|r  136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF--ALEMLNIGGDFLVKTFQG  186 (227)
Q Consensus       136 ~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~--A~~~Lk~gG~fV~K~F~G  186 (227)
                      +|+|..|  |....          ++...++..  ..++|+++|.+|+-.-..
T Consensus       114 fdiIF~D--PPY~~----------~~~~~~l~~l~~~~~l~~~~iiiiE~~~~  154 (181)
T pfam03602       114 FDLVFLD--PPYAK----------GLIEEALELLAEKGWLNPNALIVVETESD  154 (181)
T ss_pred             CCEEECC--CCCCC----------HHHHHHHHHHHHCCCCCCCEEEEEEECCC
T ss_conf             8766359--97542----------06999999999666657980999996687


No 192
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=90.03  E-value=0.47  Score=27.04  Aligned_cols=94  Identities=26%  Similarity=0.218  Sum_probs=52.1

Q ss_pred             CCCCCEEEEEECCCCHHHHH-HHHHHCCCCCCEEEEEECCCCCC----CCCCCEEEECCCCHHHHHHHHHHHC-CCCCCE
Q ss_conf             13796788850455306899-99970687883278641121333----4698178301122079999999731-388748
Q gi|254780313|r   65 LQSNRRIVDLGSSPGSWSQV-AARITGSNANNTRVVAIDILDME----PILGVKFFKFDFLDLDSWEFIRQAI-GGNPDL  138 (227)
Q Consensus        65 ~k~g~~VlDLGaaPGgWsQv-a~~~~~~~~~~~~VigVDl~~~~----~i~gv~~~~gDi~~~~~~~~i~~~l-~~~~Dl  138 (227)
                      ..++++|+=+|++|.|-+-. +++..+    ..+|+++|+.+..    .--|+..+.-+   .+..+.+.... +..+|+
T Consensus       118 ~~~g~~V~V~G~G~iGl~~~~~a~~~G----a~~Vi~~d~~~~rl~~a~~~Ga~~~i~~---~~~~~~~~~~~~g~g~D~  190 (280)
T TIGR03366       118 DLKGRRVLVVGAGMLGLTAAAAAAAAG----AARVVAADPSPDRRELALSFGATALAEP---EVLAERQGGLQNGRGVDV  190 (280)
T ss_pred             CCCCCEEEEEECCHHHHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHCCCCEEECC---CCHHHHHHHHHCCCCCCE
T ss_conf             899998999907868999999999849----9879999199899999997399898377---577999999727888709


Q ss_pred             EEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf             97532021102221015788989998898764114877469999
Q gi|254780313|r  139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK  182 (227)
Q Consensus       139 VlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K  182 (227)
                      |+ |    ++|..            .++.-|++.|++||.+|+=
T Consensus       191 vi-e----~~G~~------------~~~~~a~~~l~~gG~iv~v  217 (280)
T TIGR03366       191 AL-E----FSGAT------------AAVRACLESLDVGGTAVLA  217 (280)
T ss_pred             EE-E----CCCCH------------HHHHHHHHHHHCCCEEEEE
T ss_conf             99-8----78988------------9999999986049899998


No 193
>KOG2730 consensus
Probab=89.71  E-value=0.4  Score=27.51  Aligned_cols=74  Identities=30%  Similarity=0.363  Sum_probs=43.7

Q ss_pred             HHCCHHHHHHHHHHHHHHC--CCCCCCCEEEE-EECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCC--------CC---
Q ss_conf             8184479999999998645--83137967888-5045530689999970687883278641121333--------46---
Q gi|254780313|r   44 LEGWRARSAYKLLQINEKH--QILQSNRRIVD-LGSSPGSWSQVAARITGSNANNTRVVAIDILDME--------PI---  109 (227)
Q Consensus        44 ~~gyrsRaafKL~eId~kf--~l~k~g~~VlD-LGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~--------~i---  109 (227)
                      .|+|-|=+.=|..|-....  ..+ +...||| .|..=|+=+|.|.+       .+.|+|||+.|+.        ++   
T Consensus        70 ~e~wfsvTpe~ia~~iA~~v~~~~-~~~~iidaf~g~gGntiqfa~~-------~~~VisIdiDPikIa~AkhNaeiYGI  141 (263)
T KOG2730          70 REGWFSVTPEKIAEHIANRVVACM-NAEVIVDAFCGVGGNTIQFALQ-------GPYVIAIDIDPVKIACARHNAEVYGV  141 (263)
T ss_pred             CCCEEEECCHHHHHHHHHHHHHHC-CCCHHHHHHHCCCCHHHHHHHH-------CCEEEEEECCHHHHHHHHCCCEEECC
T ss_conf             245477251899999987888733-7430025453688428899871-------88079985267888877606503257


Q ss_pred             -CCCEEEECCCCHHHHH
Q ss_conf             -9817830112207999
Q gi|254780313|r  110 -LGVKFFKFDFLDLDSW  125 (227)
Q Consensus       110 -~gv~~~~gDi~~~~~~  125 (227)
                       ..|.|++||+.+....
T Consensus       142 ~~rItFI~GD~ld~~~~  158 (263)
T KOG2730         142 PDRITFICGDFLDLASK  158 (263)
T ss_pred             CCEEEEEECHHHHHHHH
T ss_conf             75058883309999998


No 194
>pfam12147 Hydrolase_5 Putative lysophospholipase. This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=89.30  E-value=1.9  Score=23.29  Aligned_cols=138  Identities=17%  Similarity=0.168  Sum_probs=80.0

Q ss_pred             HHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCC-CC--CEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEEC
Q ss_conf             79999964089999999881844799999999986458313-79--6788850455306899999706878832786411
Q gi|254780313|r   26 SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQ-SN--RRIVDLGSSPGSWSQVAARITGSNANNTRVVAID  102 (227)
Q Consensus        26 s~~W~~r~~~D~y~~~Ak~~gyrsRaafKL~eId~kf~l~k-~g--~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVD  102 (227)
                      --+|+.|+.-|.-=.    .|-|-|-..=..-|.+.-.-++ .|  -.|||+.|++|-...=|.+..+..  .-.|+--|
T Consensus        95 ~Gr~IDr~YLnaiGW----rGIRqRk~hl~~li~~ai~~l~~~g~~v~ilDIAaG~GRYvldal~~~~~~--~~~illRD  168 (311)
T pfam12147        95 LGRLIDRNYLDAIGW----RGIRQRKLHLEELLRYAIARLRASGRPVRILDIAAGHGRYVLDALAKAPQR--PDSILLRD  168 (311)
T ss_pred             HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCC--CCEEEECC
T ss_conf             466777865510547----799999999999999999999967995699985168616299999857988--74588514


Q ss_pred             CCCCC-----------CCCCC-EEEECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             21333-----------46981-7830112207999999973138874897532021102221015788989998898764
Q gi|254780313|r  103 ILDME-----------PILGV-KFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFAL  170 (227)
Q Consensus       103 l~~~~-----------~i~gv-~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~  170 (227)
                      ..|+.           -+.++ .|-+||-++.+....+    .-.+++++      +||..+.  .-.++|+...|.=..
T Consensus       169 ys~~NV~~G~~li~ergl~~ia~Fe~gdAFd~~~la~l----~p~P~l~I------VSGLyEL--F~dN~lv~~sl~Gl~  236 (311)
T pfam12147       169 YSPLNVEQGRALIAERGLEDIARFEQGDAFDPASLAAL----TPAPTLAI------VSGLYEL--FPDNDLVRRSLAGLA  236 (311)
T ss_pred             CCHHHHHHHHHHHHHCCCCHHEEEEECCCCCHHHHHCC----CCCCCEEE------EECHHHH--CCCHHHHHHHHHHHH
T ss_conf             88877999999999749620006740576797676326----99997899------7012663--687299999999999


Q ss_pred             HCCCCCCEEEE
Q ss_conf             11487746999
Q gi|254780313|r  171 EMLNIGGDFLV  181 (227)
Q Consensus       171 ~~Lk~gG~fV~  181 (227)
                      ..+.+||.+|-
T Consensus       237 ~ai~~gGyLIY  247 (311)
T pfam12147       237 QAVEPGGYLIY  247 (311)
T ss_pred             HHCCCCCEEEE
T ss_conf             75089978998


No 195
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=88.96  E-value=2  Score=23.14  Aligned_cols=103  Identities=17%  Similarity=0.176  Sum_probs=51.2

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCC----CCCCCE-EEEC-CCCHHHHHHHHHHHCCCC-CC
Q ss_conf             1379678885045530689999970687883278641121333----469817-8301-122079999999731388-74
Q gi|254780313|r   65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME----PILGVK-FFKF-DFLDLDSWEFIRQAIGGN-PD  137 (227)
Q Consensus        65 ~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~----~i~gv~-~~~g-Di~~~~~~~~i~~~l~~~-~D  137 (227)
                      ++||++|+=+|++|-|=.  +.+.....|  .+|+++|..+-.    .--|+. ++.. |....+..+.+.....+. +|
T Consensus       164 v~~g~~V~V~G~G~iGl~--a~~~ak~~G--a~Vi~vd~~~~rle~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~~G~~  239 (349)
T TIGR03201       164 LKKGDLVIVIGAGGVGGY--MVQTAKAMG--AAVVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARGLR  239 (349)
T ss_pred             CCCCCEEEEECCCHHHHH--HHHHHHHCC--CEEEEEECCHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHCCCCCCC
T ss_conf             899988999897489999--999999859--9799994999999999964998998787677899999997541456756


Q ss_pred             EEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf             89753202110222101578898999889876411487746999930
Q gi|254780313|r  138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF  184 (227)
Q Consensus       138 lVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F  184 (227)
                      .. .|...+++|..            .++..|...+++||++++==+
T Consensus       240 ~~-~~~v~e~~G~~------------~~~~~a~~~~~~gG~iv~vG~  273 (349)
T TIGR03201       240 ST-GWKIFECSGSK------------PGQESALSLLSHGGTLVVVGY  273 (349)
T ss_pred             CC-CCEEEEECCCH------------HHHHHHHHHCCCCCEEEEECC
T ss_conf             55-63699824888------------999999997358979999750


No 196
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=88.56  E-value=0.31  Score=28.18  Aligned_cols=97  Identities=18%  Similarity=0.235  Sum_probs=55.1

Q ss_pred             CCCCEEEEEECCCCHHHHHH-HHHHCCCCCCEEEEEECCCCC----CCCCCCEEEECCCCHHHHHHHHHHHCCCCCCEEE
Q ss_conf             37967888504553068999-997068788327864112133----3469817830112207999999973138874897
Q gi|254780313|r   66 QSNRRIVDLGSSPGSWSQVA-ARITGSNANNTRVVAIDILDM----EPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVL  140 (227)
Q Consensus        66 k~g~~VlDLGaaPGgWsQva-~~~~~~~~~~~~VigVDl~~~----~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVl  140 (227)
                      .+|++||=+|++|.|-+.+. ++..|    ..+|+++|+.+-    ..--|+..+. |-.+.+ ..++.. ..+.+|+|+
T Consensus       168 ~~g~~VlV~G~G~iGl~~~~~ak~~G----a~~Vi~~d~~~~rl~~a~~~Ga~~~i-~~~~~~-~~~~~~-~~g~~Dvvi  240 (343)
T PRK09880        168 LQGKRVFISGVGPIGCLIVSAVKTLG----AAEIVCADLSPRSLSLARQMGADVLV-NPQNDD-MDHWKA-EKGYFDVSF  240 (343)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHCCCCEEE-CCCCCC-HHHHHH-HCCCCCEEE
T ss_conf             56988999847767999999999869----98799997978999999972997998-798743-999996-369977899


Q ss_pred             ECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECC
Q ss_conf             5320211022210157889899988987641148774699993059
Q gi|254780313|r  141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG  186 (227)
Q Consensus       141 SDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G  186 (227)
                           +++|..            .++..|+..|++||.+++-=+.+
T Consensus       241 -----e~~G~~------------~~~~~al~~~r~gG~iv~vG~~~  269 (343)
T PRK09880        241 -----EVSGHP------------SSVNTCLEVTRAKGVMVQVGMGG  269 (343)
T ss_pred             -----EECCCH------------HHHHHHHHHCCCCEEEEEEECCC
T ss_conf             -----921999------------99999997377983999997279


No 197
>PRK11524 putative methyltransferase; Provisional
Probab=88.33  E-value=2.2  Score=22.88  Aligned_cols=28  Identities=21%  Similarity=0.355  Sum_probs=15.3

Q ss_pred             CCCCCEEEEEEECCCCHHHHH-HHHHHHC
Q ss_conf             487746999930599989999-9998625
Q gi|254780313|r  173 LNIGGDFLVKTFQGGTTNDIL-CLLKKHF  200 (227)
Q Consensus       173 Lk~gG~fV~K~F~G~~~~~l~-~~l~~~F  200 (227)
                      ..+-|..|+=-|.|+++..+. ..+.+.|
T Consensus       205 ~S~egDlVLDPF~GSGTT~~aA~~lgR~~  233 (284)
T PRK11524        205 SSNPGDIVLDPFAGSFTTGAVAKASGRKF  233 (284)
T ss_pred             HCCCCCEEEECCCCCCHHHHHHHHCCCCE
T ss_conf             48899989957988868999999829958


No 198
>TIGR00091 TIGR00091 tRNA (guanine-N(7)-)-methyltransferase; InterPro: IPR004395   This predicted S-adenosylmethionine-dependent methyltransferase is found in a single copy in most Bacteria . It is also found, with a short amino-terminal extension in eukaryotes. Its function is unknown. In Escherichia coli, this protein flanks the DNA repair protein MutY, also called micA.; GO: 0008168 methyltransferase activity.
Probab=88.21  E-value=2.2  Score=22.83  Aligned_cols=122  Identities=16%  Similarity=0.114  Sum_probs=69.1

Q ss_pred             CCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECC--------CC-----------CCCCC--CCEEEECCCCHHHH
Q ss_conf             37967888504553068999997068788327864112--------13-----------33469--81783011220799
Q gi|254780313|r   66 QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI--------LD-----------MEPIL--GVKFFKFDFLDLDS  124 (227)
Q Consensus        66 k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl--------~~-----------~~~i~--gv~~~~gDi~~~~~  124 (227)
                      .....+||+|||-|.+.--.++..+    +...+||-+        -+           -..+.  |++.+++|..... 
T Consensus        18 ~~~p~~~EIGcG~G~fl~~~A~~nP----~~~flGIE~RvqvtnYv~~p~v~~a~~~~~~~g~~~~Nl~~L~~DA~~l~-   92 (216)
T TIGR00091        18 NQKPLVLEIGCGKGRFLIKMAKQNP----DKNFLGIEIRVQVTNYVETPIVLKAINKANKLGLKLRNLHVLCGDANELL-   92 (216)
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHCC----CCCEEEEEEEEEEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHCCHHHHH-
T ss_conf             1454489841687602689977279----97277789998874102272899887557661784421352213602320-


Q ss_pred             HHHHHHHCCCCCCEEEECCCHHHCCC---------CCCHHH-HHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHH
Q ss_conf             99999731388748975320211022---------210157-88989998898764114877469999305999899999
Q gi|254780313|r  125 WEFIRQAIGGNPDLVLSDMAYPTIGH---------RKIDHL-RTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILC  194 (227)
Q Consensus       125 ~~~i~~~l~~~~DlVlSDmapn~SG~---------~~~D~~-~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~  194 (227)
                                  +--.++.-|.++.+         +..-+- |..+  ..-|.-...+|++||.+-+|+=.-..++.-++
T Consensus        93 ------------~~~~~~~PP~l~k~f~~FPDPW~KkRH~KRR~~~--~~Fl~~~~~~L~~~G~i~~~TD~~~lfE~mL~  158 (216)
T TIGR00091        93 ------------EKFFPDGPPSLSKVFLNFPDPWPKKRHNKRRITQ--PHFLKEVANVLKKGGVIELKTDNEPLFEDMLK  158 (216)
T ss_pred             ------------HHHHCCCCCCEEEEEEECCCCCHHHHHCCCCCCC--HHHHHHHHHHCCCCCEEEEECCCHHHHHHHHH
T ss_conf             ------------4540078980456888778895102102234256--78999999970459689997078467899999


Q ss_pred             HHHHHC-CEEEEE
Q ss_conf             998625-846997
Q gi|254780313|r  195 LLKKHF-QKVIHV  206 (227)
Q Consensus       195 ~l~~~F-~~V~~~  206 (227)
                      .+..++ ..+.+.
T Consensus       159 ~l~~~~q~f~~~~  171 (216)
T TIGR00091       159 VLSENDQLFVIIS  171 (216)
T ss_pred             HHHHCCCCEEEEE
T ss_conf             9965364124521


No 199
>pfam03141 DUF248 Putative methyltransferase. Members of this family of hypothetical plant proteins are probably methyltransferases: several of the aligned sequences either match the methyltransferase profile, or contain a SAM-binding motif. A protein from Arabidopsis thaliana contains both. Several family members are described as ankyrin like.
Probab=87.68  E-value=0.66  Score=26.12  Aligned_cols=162  Identities=15%  Similarity=0.174  Sum_probs=70.8

Q ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHCCCCC--CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEE
Q ss_conf             99999881844799999999986458313--7967888504553068999997068788327864112133346981783
Q gi|254780313|r   38 YVQRAQLEGWRARSAYKLLQINEKHQILQ--SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFF  115 (227)
Q Consensus        38 y~~~Ak~~gyrsRaafKL~eId~kf~l~k--~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~i~gv~~~  115 (227)
                      |..-.+...-|-+.+++|..+     ++.  .-.||+|--|.=|||.--..+   ..-.-..||-++-.   .--+|.+=
T Consensus       339 f~~D~~~Wk~~V~~Y~~l~~~-----~i~~~~~RNVMDMnA~~GGFAAAL~~---~~vWVMNVVP~~~~---nTL~vIyd  407 (506)
T pfam03141       339 FKADTELWKRRVSKYKRLLKL-----LIDKGRVRNVMDMNAGFGGFAAALID---DPVWVMNVVPVDSP---DTLPVIYD  407 (506)
T ss_pred             HHHHHHHHHHHHHHHHHHHHC-----CCCCCCEEEEEECCCCCCHHHHHHCC---CCEEEEEECCCCCC---CCCCEEEE
T ss_conf             898999999999999987402-----25567601222124442158898637---98049983558999---87545875


Q ss_pred             ECCCCHHHHHHHH--HHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCH-HHH
Q ss_conf             0112207999999--9731388748975320211022210157889899988987641148774699993059998-999
Q gi|254780313|r  116 KFDFLDLDSWEFI--RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT-NDI  192 (227)
Q Consensus       116 ~gDi~~~~~~~~i--~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~-~~l  192 (227)
                      .|=|.-.  ++-.  .......+|++=+|.-...--    +   -.++ +..+--..++|+|+|.+|+.=  ..+. ..+
T Consensus       408 RGLiG~y--HDWCE~FsTYPRTYDLlHA~~lfS~~~----~---rC~~-~dillEMDRILRP~G~vIiRD--~~~vl~~v  475 (506)
T pfam03141       408 RGLIGIY--HDWCEPFSTYPRTYDLLHADHLFSLYK----K---RCNL-EDILLEMDRILRPGGAVIIRD--DVDVLDKV  475 (506)
T ss_pred             CCCCCEE--ECCCCCCCCCCCCHHHHHHHHHHHHHC----C---CCCH-HHHHHHHHHHCCCCCEEEEEC--CHHHHHHH
T ss_conf             4421010--022455788885077773532347761----7---8658-999988876006881499946--79999999


Q ss_pred             HHHHHHHCCEEEEECCCCCCCCCCEEEEEEC
Q ss_conf             9999862584699768665755824989830
Q gi|254780313|r  193 LCLLKKHFQKVIHVKPVASRAESVEMFLLAK  223 (227)
Q Consensus       193 ~~~l~~~F~~V~~~KP~aSR~~S~E~Ylv~~  223 (227)
                      ...++..==++.++-- ..-+...|.-|+|.
T Consensus       476 ~~i~~~m~W~~~~~d~-e~g~~~~EkiL~~~  505 (506)
T pfam03141       476 KKIAKAMRWEVRITDT-EDGPHDPEKILIAQ  505 (506)
T ss_pred             HHHHHHCCCCEEEEEC-CCCCCCCCEEEEEE
T ss_conf             9999738640698765-66899871389986


No 200
>pfam06080 DUF938 Protein of unknown function (DUF938). This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=87.60  E-value=2.4  Score=22.60  Aligned_cols=28  Identities=25%  Similarity=0.189  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf             5788989998898764114877469999
Q gi|254780313|r  155 HLRTMSLCEAATFFALEMLNIGGDFLVK  182 (227)
Q Consensus       155 ~~~~~~L~~~al~~A~~~Lk~gG~fV~K  182 (227)
                      |+.+-+.++..+.-|.++|++||.|++=
T Consensus       110 HI~pw~~~~~lf~ga~~~L~~gG~l~lY  137 (201)
T pfam06080       110 HISPWSCVEGLFRGAGRLLPPGGVLYIY  137 (201)
T ss_pred             HHCCHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             7378999999999999985158826874


No 201
>KOG1331 consensus
Probab=87.44  E-value=2.2  Score=22.81  Aligned_cols=127  Identities=21%  Similarity=0.154  Sum_probs=67.0

Q ss_pred             HCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCC-CCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC----CC
Q ss_conf             408999999988184479999999998645831-3796788850455306899999706878832786411213----33
Q gi|254780313|r   33 HINDPYVQRAQLEGWRARSAYKLLQINEKHQIL-QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD----ME  107 (227)
Q Consensus        33 ~~~D~y~~~Ak~~gyrsRaafKL~eId~kf~l~-k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~----~~  107 (227)
                      ....-|.+.|..   -+-..++..-.-..|-.. -.|..++|.||+=|-       ..+.+ ..+.++|.|+-.    ..
T Consensus        13 yVh~IYd~ia~~---fs~tr~~~Wp~v~qfl~~~~~gsv~~d~gCGngk-------y~~~~-p~~~~ig~D~c~~l~~~a   81 (293)
T KOG1331          13 YVHSIYDKIATH---FSATRAAPWPMVRQFLDSQPTGSVGLDVGCGNGK-------YLGVN-PLCLIIGCDLCTGLLGGA   81 (293)
T ss_pred             HHHHHHHHHHHH---CCCCCCCCCHHHHHHHHCCCCCCEEEECCCCCCC-------CCCCC-CCCEEEECCHHHHHCCCC
T ss_conf             757999876553---0654447617899998506876404542468765-------57679-863154030223220533


Q ss_pred             CCCCC-EEEECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEC
Q ss_conf             46981-7830112207999999973138874897532021102221015788989998898764114877469999305
Q gi|254780313|r  108 PILGV-KFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ  185 (227)
Q Consensus       108 ~i~gv-~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~  185 (227)
                      .-.|. .....|+.+...       -...+|..+|     +   ..+-|..+-+.-+.++.-..++|+|||+..+=++-
T Consensus        82 k~~~~~~~~~ad~l~~p~-------~~~s~d~~ls-----i---avihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa  145 (293)
T KOG1331          82 KRSGGDNVCRADALKLPF-------REESFDAALS-----I---AVIHHLSTRERRERALEELLRVLRPGGNALVYVWA  145 (293)
T ss_pred             CCCCCCEEEHHHHHCCCC-------CCCCCCCCHH-----H---HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEH
T ss_conf             347986256124442898-------7876000323-----3---54444436778999999999872678856899850


No 202
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=87.03  E-value=2.6  Score=22.39  Aligned_cols=183  Identities=15%  Similarity=0.127  Sum_probs=99.5

Q ss_pred             HHHHHCCCHHHHH--HHHHCCHHHHHHHHHHHHHH--CCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCC
Q ss_conf             9996408999999--98818447999999999864--5831379678885045530689999970687883278641121
Q gi|254780313|r   29 WLNRHINDPYVQR--AQLEGWRARSAYKLLQINEK--HQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL  104 (227)
Q Consensus        29 W~~r~~~D~y~~~--Ak~~gyrsRaafKL~eId~k--f~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~  104 (227)
                      |+-..+-...+-+  ...|=|..|.-..|++=...  -..+.++..+|||||+-+--+....+-....+....-++||+.
T Consensus        34 ~fYD~~Gs~LFe~It~lpEYYptR~E~~IL~~~~~eIa~~i~~~~~lVElGsG~~~Kt~~LL~al~~~~~~~~Y~piDIS  113 (319)
T TIGR03439        34 LLYDDEGLKLFEEITYSPEYYLTNDEIEILKKHSSDIAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVS  113 (319)
T ss_pred             HHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf             51125086999998779866853789999999899999855899769974688724589999999854997428865176


Q ss_pred             C---------C--CCCCCC--EEEECCCCHHHHHHHHHH-HCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             3---------3--346981--783011220799999997-3138874897532021102221015788989998898764
Q gi|254780313|r  105 D---------M--EPILGV--KFFKFDFLDLDSWEFIRQ-AIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFAL  170 (227)
Q Consensus       105 ~---------~--~~i~gv--~~~~gDi~~~~~~~~i~~-~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~  170 (227)
                      .         +  ...+++  .-+.||+++...  .+.. ......-+++-=+  ++-||-+-+++..  +   .-.++.
T Consensus       114 ~~~L~~s~~~l~~~~~~~l~v~~i~gdy~~~~~--~l~~~~~~~~~~l~~flG--StIGNf~~~eA~~--f---L~~~~~  184 (319)
T TIGR03439       114 RSELQRTLAELPLGNFSHVRCAGLLGTYDDGLA--WLKRPENRSRPTTILWLG--SSIGNFSRPEAAA--F---LAGFLA  184 (319)
T ss_pred             HHHHHHHHHHHHHCCCCCCEEEEEEECHHHHHH--HCCCCCCCCCCEEEEECC--CCCCCCCHHHHHH--H---HHHHHH
T ss_conf             999999998742404897558888753787654--205754467875999616--5446789799999--9---999999


Q ss_pred             HCCCCCCEEEEEE------------EC---CC--CHH-HHHHH----HH------HHCCEEEEECCCCCCCCCCEEEEEE
Q ss_conf             1148774699993------------05---99--989-99999----98------6258469976866575582498983
Q gi|254780313|r  171 EMLNIGGDFLVKT------------FQ---GG--TTN-DILCL----LK------KHFQKVIHVKPVASRAESVEMFLLA  222 (227)
Q Consensus       171 ~~Lk~gG~fV~K~------------F~---G~--~~~-~l~~~----l~------~~F~~V~~~KP~aSR~~S~E~Ylv~  222 (227)
                      ..|.+||.|++=+            ++   |-  .|+ .++..    +.      ..|+.+-.+-|..+|-   |+|+++
T Consensus       185 ~~l~~~d~lLiG~Dl~Kd~~~l~~AYnD~~GvTa~FnlN~L~riNr~Lg~d~F~~~~f~h~a~yn~~~~ri---em~L~s  261 (319)
T TIGR03439       185 TALSPSDSFLIGLDGCKDPDKVLRAYNDPGGVTRRFVLNGLVHANEILGSEAFREEDWEFLGEWDEELGRH---EAFYIP  261 (319)
T ss_pred             HHCCCCCEEEECCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCEEEEEECCCCCCC---HHEEEC
T ss_conf             72598875896566777989989763088541099998599999998473457653067999984775813---112770


Q ss_pred             C
Q ss_conf             0
Q gi|254780313|r  223 K  223 (227)
Q Consensus       223 ~  223 (227)
                      +
T Consensus       262 ~  262 (319)
T TIGR03439       262 K  262 (319)
T ss_pred             C
T ss_conf             6


No 203
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=86.74  E-value=2.2  Score=22.81  Aligned_cols=93  Identities=16%  Similarity=0.262  Sum_probs=48.3

Q ss_pred             HCCCCCCCCEEEEEEC-CCCHHHHHHHHHHCCCCCCEEEEEECCCCCCC--C--CCCEEEECCCCHHHHHHHHHHHCCCC
Q ss_conf             4583137967888504-55306899999706878832786411213334--6--98178301122079999999731388
Q gi|254780313|r   61 KHQILQSNRRIVDLGS-SPGSWSQVAARITGSNANNTRVVAIDILDMEP--I--LGVKFFKFDFLDLDSWEFIRQAIGGN  135 (227)
Q Consensus        61 kf~l~k~g~~VlDLGa-aPGgWsQva~~~~~~~~~~~~VigVDl~~~~~--i--~gv~~~~gDi~~~~~~~~i~~~l~~~  135 (227)
                      +.+ +++|++||=.|| ++.|-.  +.+.....  +.+|+++|..+-..  +  -+.+.+.    +....+.+.+.  +.
T Consensus       157 ~~~-~~~g~~VlI~Ga~G~vG~~--aiqlak~~--Ga~vi~v~~~~~k~~~~~~~~~~~i~----~~~~~~~~~~~--~g  225 (332)
T PRK13771        157 RAG-VSEGETVLVTGAGGGVGIH--AVQVAKAY--GAKVIAVTTSESKAKAVGKYADYVIV----GSKFSEEVKKL--GG  225 (332)
T ss_pred             HHC-CCCCCEEEEECCCCHHHHH--HHHHHHHC--CCEEEEEECCHHHHHHHHHCCCEEEE----CCCHHHHHHHC--CC
T ss_conf             719-9999999997787758999--99999986--99899994999999999856998983----63057888734--68


Q ss_pred             CCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf             74897532021102221015788989998898764114877469999
Q gi|254780313|r  136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK  182 (227)
Q Consensus       136 ~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K  182 (227)
                      +|+|+     +++|..             ++.-+...|++||.+|+=
T Consensus       226 ~Dvvi-----d~~G~~-------------~~~~~~~~l~~~G~iv~~  254 (332)
T PRK13771        226 ADIVI-----ETVGGP-------------TLEESLRSLNWGGKIVLI  254 (332)
T ss_pred             CCEEE-----ECCCHH-------------HHHHHHHHHCCCCEEEEE
T ss_conf             63898-----457668-------------899888862589699999


No 204
>TIGR00095 TIGR00095 putative methyltransferase; InterPro: IPR004398 This is a family of conserved hypothetical proteins, which includes a putative methylase..
Probab=86.61  E-value=1.9  Score=23.26  Aligned_cols=106  Identities=17%  Similarity=0.035  Sum_probs=65.9

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CCCC------CC--CEEEECCCCHHHHHHHHH
Q ss_conf             796788850455306899999706878832786411213---------3346------98--178301122079999999
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------MEPI------LG--VKFFKFDFLDLDSWEFIR  129 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~~i------~g--v~~~~gDi~~~~~~~~i~  129 (227)
                      .+..+||++|+-|+=.-=|..+-     --.++-||...         ++-+      ++  ..+..++.....+.    
T Consensus        55 ~~~~~LD~FAGsG~LG~EALSRg-----A~~~~f~E~d~~~~~~l~~N~~~L~nrlk~~~~~~~~~~~~~~~~~~~----  125 (210)
T TIGR00095        55 VGAHFLDLFAGSGSLGLEALSRG-----AKSAVFVEQDKKVAQTLKENLSTLKNRLKLSGEQATVLNDAERALLFL----  125 (210)
T ss_pred             CCCEEEEEECCCHHHHHHHHHHC-----CCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHH----
T ss_conf             68727885406446537664014-----162378736867999999999998887158530000000256665776----


Q ss_pred             HHCCC-CCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf             73138-87489753202110222101578898999889876411487746999930
Q gi|254780313|r  130 QAIGG-NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF  184 (227)
Q Consensus       130 ~~l~~-~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F  184 (227)
                      ..=++ .+|+|.-|  |... ....|-...++|+..||+-...+|+++|..|+-.=
T Consensus       126 ~~~~ts~~d~iylD--PPf~-~~~ad~~~~l~l~~~alerl~~~L~~~~~i~ve~~  178 (210)
T TIGR00095       126 AKKQTSPFDIIYLD--PPFN-TGLADLEAILELLGEALERLNKWLNPKGLIVVEYD  178 (210)
T ss_pred             HCCCCCCEEEEEEC--CCCC-CCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf             51799611478714--8888-76103799999999999987310487857998634


No 205
>pfam01739 CheR CheR methyltransferase, SAM binding domain. CheR proteins are part of the chemotaxis signaling mechanism in bacteria. CheR methylates the chemotaxis receptor at specific glutamate residues. CheR is an S-adenosylmethionine- dependent methyltransferase - the C-terminal domain (this one) binds SAM.
Probab=86.05  E-value=2.9  Score=22.07  Aligned_cols=98  Identities=20%  Similarity=0.178  Sum_probs=50.5

Q ss_pred             CCEEEEEECCCCH--HHH--HHHHHHC-CCCCCEEEEEECCCC---------------CCCCC-----------------
Q ss_conf             9678885045530--689--9999706-878832786411213---------------33469-----------------
Q gi|254780313|r   68 NRRIVDLGSSPGS--WSQ--VAARITG-SNANNTRVVAIDILD---------------MEPIL-----------------  110 (227)
Q Consensus        68 g~~VlDLGaaPGg--WsQ--va~~~~~-~~~~~~~VigVDl~~---------------~~~i~-----------------  110 (227)
                      .-+|.-.||+-|-  +|-  .+.+..+ ....+..|+|.||..               +..++                 
T Consensus        31 ~lrIWsagCStGEE~YSlAi~l~e~~~~~~~~~~~I~atDI~~~~l~~Ar~G~Y~~~~~~~~p~~~~~ryF~~~~~~~~~  110 (194)
T pfam01739        31 RVRIWSAGCSSGEEPYSLAMLLAETLPNALPWDFKILATDIDLSALEKARAGVYPERELEGLPPELLRRYFTKGAGGGYR  110 (194)
T ss_pred             CEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCCHHHHHCCCHHHHHHHCCCCCCCCEE
T ss_conf             55999736889951899999999974325787449999739889999998789889998459999999628607899487


Q ss_pred             -------CCEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf             -------817830112207999999973138874897532021102221015788989998898764114877469999
Q gi|254780313|r  111 -------GVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK  182 (227)
Q Consensus       111 -------gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K  182 (227)
                             .|.|-+.|+.+.        ....++|+|+|=   |+-      .+-.-+....++.--...|+|||-+++=
T Consensus       111 i~~~lr~~V~F~~~NL~~~--------~~~~~~DlIfCR---NVl------IYF~~~~~~~vl~~l~~~L~~gG~L~lG  172 (194)
T pfam01739       111 VKPEIKEMVLFEYHNLLDY--------PPLGDFDVIFCR---NVL------IYFDEETQRKILNRFASALKPGGYLFLG  172 (194)
T ss_pred             ECHHHHCCCEEEECCCCCC--------CCCCCEEEEEEC---CEE------EECCHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             6889971166854665568--------876750399980---210------1379999999999999984899499980


No 206
>pfam04672 DUF574 Protein of unknown function (DUF574). Family of uncharacterized proteins.
Probab=86.02  E-value=2.9  Score=22.06  Aligned_cols=135  Identities=16%  Similarity=0.203  Sum_probs=78.1

Q ss_pred             CHHHHHHHHHHHHHHCCCCCCC-CEEEEEECC---CCHHHHHHHHHHCCCCCCEEEEEECCCCCC---------C--CCC
Q ss_conf             4479999999998645831379-678885045---530689999970687883278641121333---------4--698
Q gi|254780313|r   47 WRARSAYKLLQINEKHQILQSN-RRIVDLGSS---PGSWSQVAARITGSNANNTRVVAIDILDME---------P--ILG  111 (227)
Q Consensus        47 yrsRaafKL~eId~kf~l~k~g-~~VlDLGaa---PGgWsQva~~~~~~~~~~~~VigVDl~~~~---------~--i~g  111 (227)
                      |..||+=-|..        .-| .-.|||||+   .|.--|+|.+...    +.+|+=||.-|+.         .  -..
T Consensus        56 Fl~RaVr~La~--------e~GIrQFLDlGsGlPT~~nvHeVAq~~~P----~aRVVYVD~DPvvlaHaraLL~~~~~~~  123 (268)
T pfam04672        56 FMHRAVRHLAE--------EAGIRQFLDIGTGLPTEPNVHQVAQRVAP----ESRVVYVDNDPIVLTHARALLTSTPEGA  123 (268)
T ss_pred             HHHHHHHHHHH--------HCCCEEEEEECCCCCCCCCCCHHHHHCCC----CCEEEEECCCCHHHHHHHHHHCCCCCCC
T ss_conf             99999999987--------54950577605699999972146673299----8639998898279999999956898774


Q ss_pred             CEEEECCCCHHHHHH---HHHHHCC--CCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECC
Q ss_conf             178301122079999---9997313--88748975320211022210157889899988987641148774699993059
Q gi|254780313|r  112 VKFFKFDFLDLDSWE---FIRQAIG--GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG  186 (227)
Q Consensus       112 v~~~~gDi~~~~~~~---~i~~~l~--~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G  186 (227)
                      ..++++|+.+++..-   ++...++  .++-+++...-..+.     |...-..+    +.--...|.+|..+++-.+.+
T Consensus       124 t~~v~aDlrdp~~iL~~p~~~~~lD~~rPValll~~vLh~v~-----D~~~p~~i----v~~l~d~l~pGS~L~ish~t~  194 (268)
T pfam04672       124 TDYIHADVRDPEEILEHPEARRTLDFDRPVALSLVAILHFVP-----DDDDPYGI----VRRLMDALPAGSYLVLSHGTS  194 (268)
T ss_pred             EEEEECCCCCHHHHHCCHHHHHHCCCCCCCHHHHHHHHCCCC-----CCCCHHHH----HHHHHHHCCCCCEEEEEECCC
T ss_conf             699977777989986598788537878861345334434578-----61049999----999997269976599984358


Q ss_pred             CCHHHHHHHHHHHCCE
Q ss_conf             9989999999862584
Q gi|254780313|r  187 GTTNDILCLLKKHFQK  202 (227)
Q Consensus       187 ~~~~~l~~~l~~~F~~  202 (227)
                      ....+....+...|++
T Consensus       195 d~~p~~~~~~~~~~~~  210 (268)
T pfam04672       195 DLNPELVEAVADVYAK  210 (268)
T ss_pred             CCCHHHHHHHHHHHHC
T ss_conf             8888899999999970


No 207
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=85.93  E-value=1.1  Score=24.86  Aligned_cols=41  Identities=29%  Similarity=0.351  Sum_probs=32.2

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCC
Q ss_conf             796788850455306899999706878832786411213334698
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILG  111 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~i~g  111 (227)
                      .|.+||=.|-+|.|++- +..+++.   +..|+|||=+.++|++-
T Consensus       400 tg~~VLVvGlGPAG~tL-sH~Lln~---Gh~Vv~IDGLKIepLp~  440 (1048)
T PRK06567        400 TNYNILVTGLGPAGFSL-SYYLLRS---GHNVTAIDGLKITPLPF  440 (1048)
T ss_pred             CCCEEEEEECCCCCHHH-HHHHHHC---CCCEEEECCEEECCCCH
T ss_conf             99648999248652018-8998747---87289865445202874


No 208
>KOG1269 consensus
Probab=85.61  E-value=0.73  Score=25.86  Aligned_cols=104  Identities=19%  Similarity=0.178  Sum_probs=53.5

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf             31379678885045530689999970687883278641121333469817830112207999999973138874897532
Q gi|254780313|r   64 ILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDM  143 (227)
Q Consensus        64 l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDm  143 (227)
                      -++|+..++|+||.=|+-+-++...-     ...++|+|+.+-+-            ...........+..+.+.|++|.
T Consensus       107 ~~~~~~~~~~~~~g~~~~~~~i~~f~-----~~~~~Gl~~n~~e~------------~~~~~~~~~~~l~~k~~~~~~~~  169 (364)
T KOG1269         107 SCFPGSKVLDVGTGVGGPSRYIAVFK-----KAGVVGLDNNAYEA------------FRANELAKKAYLDNKCNFVVADF  169 (364)
T ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHC-----CCCCCCCCCCHHHH------------HHHHHHHHHHHHHHHCCEEHHHH
T ss_conf             27654111224767675167788862-----57751787679999------------99887778887642023522555


Q ss_pred             CHH------HCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf             021------10222101578898999889876411487746999930
Q gi|254780313|r  144 AYP------TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF  184 (227)
Q Consensus       144 apn------~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F  184 (227)
                      .--      ..|.+.+|--.-+.=...++.=..++++|||-+++|-|
T Consensus       170 ~~~~fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~  216 (364)
T KOG1269         170 GKMPFEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEW  216 (364)
T ss_pred             HCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEHHH
T ss_conf             14887746667489876124478699999988503677716884888


No 209
>PRK13845 putative glycerol-3-phosphate acyltransferase PlsX; Provisional
Probab=85.42  E-value=0.87  Score=25.39  Aligned_cols=92  Identities=21%  Similarity=0.374  Sum_probs=42.6

Q ss_pred             CHHHHHHHHHHHHH--HCCC------CCCCC--EEEEEECCCC----HHHHHHH-------HHHCCCCCCEEEEEECCCC
Q ss_conf             44799999999986--4583------13796--7888504553----0689999-------9706878832786411213
Q gi|254780313|r   47 WRARSAYKLLQINE--KHQI------LQSNR--RIVDLGSSPG----SWSQVAA-------RITGSNANNTRVVAIDILD  105 (227)
Q Consensus        47 yrsRaafKL~eId~--kf~l------~k~g~--~VlDLGaaPG----gWsQva~-------~~~~~~~~~~~VigVDl~~  105 (227)
                      +-+=|-|.|--|.-  +--|      .+++.  .+||+||-+-    --.|+|.       ...+-.  +++| |  |+.
T Consensus       207 lmA~a~~~Lgri~GI~RPAIa~~~Pt~~~g~~~llLD~GANvdckpe~L~QFAiMGsiYAk~Vlgi~--~PrV-G--LLN  281 (437)
T PRK13845        207 MMASAIFRLGRLKGIDRPAIGALFPTKDPGQPVLVLDVGANMDCKPSYLHQFALLGNIYSRDVLQVK--KPRI-G--LLN  281 (437)
T ss_pred             HHHHHHHEECCCCCCCCCCCCEECCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCC--CCCE-E--EEE
T ss_conf             9987761136579987141062267668997379997885899898999999999999999960999--9857-8--764


Q ss_pred             CCCCCCCEEEECCCCHHHHHHHHHH--------------HCCCCCCEEEECCCHHHCCC
Q ss_conf             3346981783011220799999997--------------31388748975320211022
Q gi|254780313|r  106 MEPILGVKFFKFDFLDLDSWEFIRQ--------------AIGGNPDLVLSDMAYPTIGH  150 (227)
Q Consensus       106 ~~~i~gv~~~~gDi~~~~~~~~i~~--------------~l~~~~DlVlSDmapn~SG~  150 (227)
                      +    |..-.+|+-...++++.+.+              .+.+.+|||+||+   ++||
T Consensus       282 I----GeEe~KGnel~keA~~LLk~~~~iNFiGNVEGrDI~~G~~DVVVcDG---FtGN  333 (437)
T PRK13845        282 I----GEEECKGNDLSLKTFELLSEEKRFHFAGNCEGRDVLSGDFDVVVCDG---FTGN  333 (437)
T ss_pred             C----CCCCCCCCHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCEEEECC---CCCH
T ss_conf             5----66455563999999999860889733155440103578787899578---4018


No 210
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=84.17  E-value=2.9  Score=22.06  Aligned_cols=97  Identities=19%  Similarity=0.289  Sum_probs=49.5

Q ss_pred             CCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCC----CCCC-EEEECCCCHH-HHHHHHHHHCCCCCCEE
Q ss_conf             3796788850455306899999706878832786411213334----6981-7830112207-99999997313887489
Q gi|254780313|r   66 QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP----ILGV-KFFKFDFLDL-DSWEFIRQAIGGNPDLV  139 (227)
Q Consensus        66 k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~----i~gv-~~~~gDi~~~-~~~~~i~~~l~~~~DlV  139 (227)
                      ++|.+|.=.|+.-=|-+-+..-+..   ...+|+|||+.+-+-    -.|+ +++...  +. +..+.+.+.-++-+|.+
T Consensus       184 ~~G~tvaV~GlGgVGlaaI~gA~~a---gA~~IiAvD~~~~Kl~~A~~fGAT~~vn~~--~~~~vv~~i~~~T~gG~d~~  258 (366)
T COG1062         184 EPGDTVAVFGLGGVGLAAIQGAKAA---GAGRIIAVDINPEKLELAKKFGATHFVNPK--EVDDVVEAIVELTDGGADYA  258 (366)
T ss_pred             CCCCEEEEEECCHHHHHHHHHHHHC---CCCEEEEEECCHHHHHHHHHCCCCEEECCC--CHHHHHHHHHHHCCCCCCEE
T ss_conf             9998489990427669999989874---885499993777899999863982465540--02548999998627887789


Q ss_pred             EECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf             753202110222101578898999889876411487746999930
Q gi|254780313|r  140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF  184 (227)
Q Consensus       140 lSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F  184 (227)
                           .+++|+..            ++.-|+..+.++|..|+==.
T Consensus       259 -----~e~~G~~~------------~~~~al~~~~~~G~~v~iGv  286 (366)
T COG1062         259 -----FECVGNVE------------VMRQALEATHRGGTSVIIGV  286 (366)
T ss_pred             -----EECCCCHH------------HHHHHHHHHHCCCEEEEEEC
T ss_conf             -----99259989------------99999998743781899952


No 211
>pfam09243 Rsm22 Mitochondrial small ribosomal subunit Rsm22. Rsm22 has been identified as a mitochondrial small ribosomal subunit and is a methyltransferase. In Schizosaccharomyces pombe, Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria.
Probab=83.59  E-value=2.1  Score=23.04  Aligned_cols=46  Identities=20%  Similarity=0.248  Sum_probs=31.2

Q ss_pred             HHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECC
Q ss_conf             99999864583137967888504553068999997068788327864112
Q gi|254780313|r   54 KLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI  103 (227)
Q Consensus        54 KL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl  103 (227)
                      =|.||.++-.=|.| .+|||+|++||..+=.+.+..+.   --.++.||-
T Consensus        22 vl~Ei~~r~p~f~P-~slLD~GsGpGt~~wAa~~~w~~---l~~~~~vd~   67 (275)
T pfam09243        22 SLDELAERVPQFAP-LSHLDVGAGPGTALWAASELWPG---LEPATVIDA   67 (275)
T ss_pred             HHHHHHHHCCCCCC-CEEEEECCCHHHHHHHHHHHHCC---CEEEEEECC
T ss_conf             99999986799998-75777277579999999988424---768999748


No 212
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=83.16  E-value=3.9  Score=21.27  Aligned_cols=90  Identities=18%  Similarity=0.317  Sum_probs=50.7

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC-----CCCCCCEEEECCCCHHHHHHHHHHHCCCCCCEE
Q ss_conf             137967888504553068999997068788327864112133-----346981783011220799999997313887489
Q gi|254780313|r   65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM-----EPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLV  139 (227)
Q Consensus        65 ~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~-----~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlV  139 (227)
                      ++||+.|+=.|++ | ---.|.+....-+  .+|+++|..+-     ..+-...++...  +++..+.+.+.    +|+|
T Consensus       164 ~~pG~~V~I~G~G-G-lGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~lGAd~~i~~~--~~~~~~~~~~~----~d~i  233 (339)
T COG1064         164 VKPGKWVAVVGAG-G-LGHMAVQYAKAMG--AEVIAITRSEEKLELAKKLGADHVINSS--DSDALEAVKEI----ADAI  233 (339)
T ss_pred             CCCCCEEEEECCC-H-HHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHCCCEEEECC--CCHHHHHHHHH----CCEE
T ss_conf             9999899998774-8-9999999999869--9699995787799999984882899767--81166776734----7399


Q ss_pred             EECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf             7532021102221015788989998898764114877469999
Q gi|254780313|r  140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK  182 (227)
Q Consensus       140 lSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K  182 (227)
                      +.=.     +.             ..++-+++.|++||++|+=
T Consensus       234 i~tv-----~~-------------~~~~~~l~~l~~~G~~v~v  258 (339)
T COG1064         234 IDTV-----GP-------------ATLEPSLKALRRGGTLVLV  258 (339)
T ss_pred             EECC-----CH-------------HHHHHHHHHHHCCCEEEEE
T ss_conf             9987-----74-------------5599999986429789997


No 213
>PRK06179 short chain dehydrogenase; Provisional
Probab=82.87  E-value=4  Score=21.20  Aligned_cols=80  Identities=21%  Similarity=0.300  Sum_probs=51.2

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEEC--CCCCCCCCCCEEEECCCCHHHHHHHHHHHCC---CCCCEEEE
Q ss_conf             796788850455306899999706878832786411--2133346981783011220799999997313---88748975
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID--ILDMEPILGVKFFKFDFLDLDSWEFIRQAIG---GNPDLVLS  141 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVD--l~~~~~i~gv~~~~gDi~~~~~~~~i~~~l~---~~~DlVlS  141 (227)
                      +..++|=-||+-|= =.-+++.....|  .+|++++  ....++..++.+++.|+++.+..+.+.+..-   ++.|+++.
T Consensus         3 ~~KvalITGassGI-G~a~A~~la~~G--~~V~~~~r~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~~~~g~iDiLVN   79 (270)
T PRK06179          3 NKKVALVTGASSGI-GRATAEALARAG--YRVFGTSRNPARATPIPGVELLELDVTDDASVQAAVQEVIARAGRIDVLVN   79 (270)
T ss_pred             CCCEEEEECCCCHH-HHHHHHHHHHCC--CEEEEEECCHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf             99589990724699-999999999879--999999689777305489789991079999999999999998399888998


Q ss_pred             CCCHHHCC
Q ss_conf             32021102
Q gi|254780313|r  142 DMAYPTIG  149 (227)
Q Consensus       142 Dmapn~SG  149 (227)
                      -.+-...|
T Consensus        80 NAGi~~~~   87 (270)
T PRK06179         80 NAGVGLLG   87 (270)
T ss_pred             CCCCCCCC
T ss_conf             98666788


No 214
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=82.73  E-value=4.1  Score=21.17  Aligned_cols=120  Identities=20%  Similarity=0.248  Sum_probs=61.5

Q ss_pred             CHHHHHHHHHH------HHHHCCCCCCCCEEEEEECCCCH--HHH--HHHHHHCC-CCCCEEEEEECCCC----------
Q ss_conf             44799999999------98645831379678885045530--689--99997068-78832786411213----------
Q gi|254780313|r   47 WRARSAYKLLQ------INEKHQILQSNRRIVDLGSSPGS--WSQ--VAARITGS-NANNTRVVAIDILD----------  105 (227)
Q Consensus        47 yrsRaafKL~e------Id~kf~l~k~g~~VlDLGaaPGg--WsQ--va~~~~~~-~~~~~~VigVDl~~----------  105 (227)
                      ||-...|..++      |-++-. -.+--+|.-.||+-|-  +|-  .+.+..+. ...+..|+|.|+.+          
T Consensus        74 FRd~~~f~~l~~~ilP~l~~~~~-~~~~lrIWsagCStGEE~YSlAm~l~e~~~~~~~~~~~I~aTDIs~~~L~~Ar~G~  152 (264)
T smart00138       74 FRESKHFEALEEKVLPLLIASRR-HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGI  152 (264)
T ss_pred             HCCHHHHHHHHHHHHHHHHHHCC-CCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHCC
T ss_conf             64879999999999899998467-79974899777888820899999999974334898569999839999999998689


Q ss_pred             -----CCCCC-----------------------CCEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHH
Q ss_conf             -----33469-----------------------81783011220799999997313887489753202110222101578
Q gi|254780313|r  106 -----MEPIL-----------------------GVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLR  157 (227)
Q Consensus       106 -----~~~i~-----------------------gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~  157 (227)
                           +..++                       .|.|-+.|+.++.       ..-+++|+|+|=   |+-      .+-
T Consensus       153 Y~~~~~~~~~~~~~~kyF~~~~~~~~v~~~lr~~v~F~~~NL~~~~-------~~~~~fDlI~CR---NVl------IYF  216 (264)
T smart00138      153 YPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAES-------PPLGDFDLIFCR---NVL------IYF  216 (264)
T ss_pred             CCHHHHHCCCHHHHHHHCCCCCCEEEECHHHHCCCCEECCCCCCCC-------CCCCCCEEEEEC---CCE------EEC
T ss_conf             8989984699999998806569889998899850918327899998-------777884199976---323------545


Q ss_pred             HHHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf             89899988987641148774699993
Q gi|254780313|r  158 TMSLCEAATFFALEMLNIGGDFLVKT  183 (227)
Q Consensus       158 ~~~L~~~al~~A~~~Lk~gG~fV~K~  183 (227)
                      .-+.-..++..-...|+|||-+++=-
T Consensus       217 ~~~~~~~vl~~l~~~L~pgG~L~lG~  242 (264)
T smart00138      217 DEPTQRKLLNRFAEALKPGGYLFLGH  242 (264)
T ss_pred             CHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf             99999999999999838993999827


No 215
>PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=82.56  E-value=4.2  Score=21.13  Aligned_cols=72  Identities=22%  Similarity=0.206  Sum_probs=50.4

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf             7967888504553068999997068788327864112133346981783011220799999997313887489753
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSD  142 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSD  142 (227)
                      .|.++|=-|++-| -=+-+++.....|  .+|+++|..+- ...-..+++.|+.+.+..+.+.+.+.+++|.++.-
T Consensus         4 ~gK~alVTG~s~G-IG~aia~~la~~G--A~V~~~d~~~~-~~~~~~~~~~D~~~~~~v~~~v~~~~g~id~lvn~   75 (261)
T PRK12428          4 DGKTIVVTGVASG-IGAEVARLLRFLG--ARVIGLDRRPP-GMTLDGFHQADLGDPASIDAAVAALPGRIDALFNV   75 (261)
T ss_pred             CCCEEEEECCCCH-HHHHHHHHHHHCC--CEEEEEECCCC-CCCCCCEEECCCCCHHHHHHHHHHHCCCCCEEEEC
T ss_conf             9988999785779-9999999999869--99999968855-45613176737899999999999837988789986


No 216
>pfam02527 GidB rRNA small subunit methyltransferase G. This is a family of bacterial glucose inhibited division proteins these are probably involved in the regulation of cell devision. GidB has been shown to be a methyltransferase G specific to the rRNA small subunit. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. GidB specifically methylates the N7 position of a guanosine in 16S rRNA.
Probab=81.93  E-value=3.1  Score=21.95  Aligned_cols=104  Identities=20%  Similarity=0.303  Sum_probs=60.0

Q ss_pred             CCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC--------C---CCCCCCEEEECCCCHHHHHHHHHHHCCCCC
Q ss_conf             96788850455306899999706878832786411213--------3---346981783011220799999997313887
Q gi|254780313|r   68 NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD--------M---EPILGVKFFKFDFLDLDSWEFIRQAIGGNP  136 (227)
Q Consensus        68 g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~--------~---~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~  136 (227)
                      +.+++|+|+++| +--+......+.   ..++-||-..        +   -.+.|+.++...+.+..        ...++
T Consensus        49 ~~~ilDiGSGaG-fPGi~LAI~~p~---~~~~LvEs~~KK~~FL~~v~~~L~L~nv~v~~~R~E~~~--------~~~~~  116 (184)
T pfam02527        49 RIKVADVGSGAG-FPGIPLAIAFPD---KKLTLLESLLKKINFLEELKKELNLENVTIVHARAEEYQ--------HEEQY  116 (184)
T ss_pred             CCEEEECCCCCC-CHHHHHHHHCCC---CEEEEEECHHHHHHHHHHHHHHCCCCCEEEEECCHHHCC--------CCCCC
T ss_conf             986883479888-467999996778---559999282899999999999859997699956044146--------44678


Q ss_pred             CEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHC
Q ss_conf             4897532021102221015788989998898764114877469999305999899999998625
Q gi|254780313|r  137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF  200 (227)
Q Consensus       137 DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~~~F  200 (227)
                      |+|+|=+-.+.               ...++++..+++++|.++.  +.|....+=+...++.+
T Consensus       117 D~v~aRA~a~l---------------~~ll~~~~~~l~~~g~~i~--~KG~~~~~El~~a~~~~  163 (184)
T pfam02527       117 DVITSRAVASL---------------NELTEWALPLLKPGGYFLA--YKGKQAEDEIEELDKAC  163 (184)
T ss_pred             CEEEECHHCCH---------------HHHHHHHHHHCCCCCEEEE--ECCCCHHHHHHHHHHHH
T ss_conf             78998100579---------------9999999986388989999--88999899999878779


No 217
>KOG1209 consensus
Probab=81.87  E-value=4.4  Score=20.97  Aligned_cols=81  Identities=20%  Similarity=0.231  Sum_probs=56.7

Q ss_pred             CCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEEC--CCCCCCCC---CCEEEECCCCHHHHHHHH----HHHCCCCCCE
Q ss_conf             96788850455306899999706878832786411--21333469---817830112207999999----9731388748
Q gi|254780313|r   68 NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID--ILDMEPIL---GVKFFKFDFLDLDSWEFI----RQAIGGNPDL  138 (227)
Q Consensus        68 g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVD--l~~~~~i~---gv~~~~gDi~~~~~~~~i----~~~l~~~~Dl  138 (227)
                      -..||=.||+-||----.++....+  +..|++.-  +.+|..+.   |...++-|+.+++..-.+    +..-+|+.|+
T Consensus         7 ~k~VlItgcs~GGIG~ala~ef~~~--G~~V~AtaR~~e~M~~L~~~~gl~~~kLDV~~~~~V~~v~~evr~~~~Gkld~   84 (289)
T KOG1209           7 PKKVLITGCSSGGIGYALAKEFARN--GYLVYATARRLEPMAQLAIQFGLKPYKLDVSKPEEVVTVSGEVRANPDGKLDL   84 (289)
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHC--CEEEEEECCCCCHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEE
T ss_conf             9759996057765349999999867--81999970224607667886097058705687277899888886189982688


Q ss_pred             EEECCCHHHCCC
Q ss_conf             975320211022
Q gi|254780313|r  139 VLSDMAYPTIGH  150 (227)
Q Consensus       139 VlSDmapn~SG~  150 (227)
                      .+-..+..||+-
T Consensus        85 L~NNAG~~C~~P   96 (289)
T KOG1209          85 LYNNAGQSCTFP   96 (289)
T ss_pred             EECCCCCCCCCC
T ss_conf             871799876552


No 218
>KOG4169 consensus
Probab=81.76  E-value=4.4  Score=20.94  Aligned_cols=152  Identities=15%  Similarity=0.226  Sum_probs=75.3

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEEC-----------CCCCCCCCCCEEEECCCCHHH----HHHHHHHH
Q ss_conf             796788850455306899999706878832786411-----------213334698178301122079----99999973
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID-----------ILDMEPILGVKFFKFDFLDLD----SWEFIRQA  131 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVD-----------l~~~~~i~gv~~~~gDi~~~~----~~~~i~~~  131 (227)
                      .|.++|=.|.+-|==.|....+..   ++-+++++|           |+.+.|..-+.|++.|+++..    +.+++...
T Consensus         4 tGKna~vtggagGIGl~~sk~Ll~---kgik~~~i~~~~En~~a~akL~ai~p~~~v~F~~~DVt~~~~~~~~f~ki~~~   80 (261)
T KOG4169           4 TGKNALVTGGAGGIGLATSKALLE---KGIKVLVIDDSEENPEAIAKLQAINPSVSVIFIKCDVTNRGDLEAAFDKILAT   80 (261)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHH---CCCHHEEEHHHHHCHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHH
T ss_conf             374589963786366999999997---67154061040147899998860399843999980120078899999999987


Q ss_pred             CCCCCCEEEECCCHHHCCCCCCHHHHHHHH------HHHHHHHHHHCC-CCCCEEEEEEE--CCCC-HHHHHHHHHHHCC
Q ss_conf             138874897532021102221015788989------998898764114-87746999930--5999-8999999986258
Q gi|254780313|r  132 IGGNPDLVLSDMAYPTIGHRKIDHLRTMSL------CEAATFFALEML-NIGGDFLVKTF--QGGT-TNDILCLLKKHFQ  201 (227)
Q Consensus       132 l~~~~DlVlSDmapn~SG~~~~D~~~~~~L------~~~al~~A~~~L-k~gG~fV~K~F--~G~~-~~~l~~~l~~~F~  201 (227)
                      + +..|+++--..-+.  .+++++-...+|      ...+|.+..+-- -+|| .|+-+=  -|-+ ...+--..-..+.
T Consensus        81 f-g~iDIlINgAGi~~--dkd~e~Ti~vNLtgvin~T~~alpyMdk~~gG~GG-iIvNmsSv~GL~P~p~~pVY~AsKaG  156 (261)
T KOG4169          81 F-GTIDILINGAGILD--DKDWERTINVNLTGVINGTQLALPYMDKKQGGKGG-IIVNMSSVAGLDPMPVFPVYAASKAG  156 (261)
T ss_pred             H-CCEEEEECCCCCCC--CHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCC-EEEEECCCCCCCCCCCCHHHHHCCCC
T ss_conf             0-94579971664446--12077865022212003366630445543499981-89970110266766420232320011


Q ss_pred             EEEEECCC----CCCCCCCEEEEEECCC
Q ss_conf             46997686----6575582498983075
Q gi|254780313|r  202 KVIHVKPV----ASRAESVEMFLLAKGF  225 (227)
Q Consensus       202 ~V~~~KP~----aSR~~S~E~Ylv~~gf  225 (227)
                      -|-+++-.    -=+..---++.||-||
T Consensus       157 VvgFTRSla~~ayy~~sGV~~~avCPG~  184 (261)
T KOG4169         157 VVGFTRSLADLAYYQRSGVRFNAVCPGF  184 (261)
T ss_pred             EEEEEHHHHHHHHHHHCCEEEEEECCCC
T ss_conf             5642054224566765587999977873


No 219
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=81.04  E-value=4.7  Score=20.78  Aligned_cols=95  Identities=24%  Similarity=0.319  Sum_probs=50.8

Q ss_pred             EEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC--CC----C--CC---CEEEECCCCHHHHHHHHHHHCC-CCCCE
Q ss_conf             888504553068999997068788327864112133--34----6--98---1783011220799999997313-88748
Q gi|254780313|r   71 IVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM--EP----I--LG---VKFFKFDFLDLDSWEFIRQAIG-GNPDL  138 (227)
Q Consensus        71 VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~--~~----i--~g---v~~~~gDi~~~~~~~~i~~~l~-~~~Dl  138 (227)
                      ++|+||++|.++ +........   ..++|+|+.+.  ..    .  .+   +.++.+|....     ...... ..+|+
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~---~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~  122 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRG---AYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGG-----VLPFEDSASFDL  122 (257)
T ss_pred             EEEEECCCCHHH-HHHHHHCCC---CEEEEECCCHHHHHHHHHHHCCCCCCCEEEEECCCCCC-----CCCCCCCCEEEE
T ss_conf             588603854689-999973578---57999368889999999863004566357676042135-----567566665778


Q ss_pred             EEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECC
Q ss_conf             975320211022210157889899988987641148774699993059
Q gi|254780313|r  139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG  186 (227)
Q Consensus       139 VlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G  186 (227)
                      +.+......     .+       ....+..+...|+++|.+++.....
T Consensus       123 ~~~~~~~~~-----~~-------~~~~~~~~~~~l~~~g~~~~~~~~~  158 (257)
T COG0500         123 VISLLVLHL-----LP-------PAKALRELLRVLKPGGRLVLSDLLR  158 (257)
T ss_pred             EEECCHHHH-----HH-------HHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf             986123443-----02-------8999999998707886899996244


No 220
>KOG2651 consensus
Probab=80.58  E-value=1.5  Score=23.82  Aligned_cols=44  Identities=20%  Similarity=0.202  Sum_probs=32.1

Q ss_pred             HHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECC
Q ss_conf             9999864583137967888504553068999997068788327864112
Q gi|254780313|r   55 LLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI  103 (227)
Q Consensus        55 L~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl  103 (227)
                      |-|+..+-..+-+-..|+|+|+++|--+++.+=..     +-.|.|||-
T Consensus       141 lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y-----~lsV~aIeg  184 (476)
T KOG2651         141 LSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGY-----GLSVKAIEG  184 (476)
T ss_pred             HHHHHHHHHHHCCCCHHHCCCCCCCHHHHHHHHCC-----CCEEEEECC
T ss_conf             99999988765187114115777328999986426-----816999646


No 221
>KOG2920 consensus
Probab=80.26  E-value=5  Score=20.62  Aligned_cols=134  Identities=16%  Similarity=0.164  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHC--CCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEECCCCHHHHHHH-
Q ss_conf             999999998645--83137967888504553068999997068788327864112133346981783011220799999-
Q gi|254780313|r   51 SAYKLLQINEKH--QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF-  127 (227)
Q Consensus        51 aafKL~eId~kf--~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~i~gv~~~~gDi~~~~~~~~-  127 (227)
                      |+.=+..|-+++  ++.-.+.+||||||.+|==.-++...-     .   .+++.++... ......+-+......... 
T Consensus        98 S~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~-----~---~~~~fqD~na-~vl~~~t~pn~~~~~~~~~  168 (282)
T KOG2920          98 SVDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKG-----A---VSVHFQDFNA-EVLRLVTLPNILVNSHAGV  168 (282)
T ss_pred             HHHHHHHHHHHHHHHEEECCCEEEECCCCCCCCCHHHHHHC-----C---CEEEEEECCH-HHEEEECCCCEECCHHHHH
T ss_conf             79999999987533367447556863786456416666403-----5---3233473351-1246521465330200102


Q ss_pred             HHHHCCCCCCEEEE---CCCHHHCCCCCCHHHHHHHHHH-----HH--HHHHHHCCCCCCEEE--EE-EEC--CCCHHHH
Q ss_conf             99731388748975---3202110222101578898999-----88--987641148774699--99-305--9998999
Q gi|254780313|r  128 IRQAIGGNPDLVLS---DMAYPTIGHRKIDHLRTMSLCE-----AA--TFFALEMLNIGGDFL--VK-TFQ--GGTTNDI  192 (227)
Q Consensus       128 i~~~l~~~~DlVlS---Dmapn~SG~~~~D~~~~~~L~~-----~a--l~~A~~~Lk~gG~fV--~K-~F~--G~~~~~l  192 (227)
                      ...-...--+++.+   |+-.|.|+..-.|-..+-+-++     ..  +..-...+++.|.+.  .| .+-  |....+|
T Consensus       169 ~~~e~~~~~~i~~s~l~dg~~~~t~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~aAK~~yFgVgg~i~~f  248 (282)
T KOG2920         169 EEKENHKVDEILNSLLSDGVFNHTERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVAAKKLYFGVGGGIEEF  248 (282)
T ss_pred             HHHHCCCCEECCCCCCCCCHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHH
T ss_conf             34413652121234332201000033111221103555176304556766665227765025665476614757213543


Q ss_pred             H
Q ss_conf             9
Q gi|254780313|r  193 L  193 (227)
Q Consensus       193 ~  193 (227)
                      .
T Consensus       249 ~  249 (282)
T KOG2920         249 N  249 (282)
T ss_pred             C
T ss_conf             3


No 222
>PRK05331 putative glycerol-3-phosphate acyltransferase PlsX; Provisional
Probab=79.72  E-value=2.1  Score=23.01  Aligned_cols=103  Identities=22%  Similarity=0.370  Sum_probs=47.3

Q ss_pred             CHHHHHHHHHCCHHHHHHHHHHHHH--HCCC---C--CCC--CEEEEEECCCCHHHHHHH-----------HHHCCCCCC
Q ss_conf             9999999881844799999999986--4583---1--379--678885045530689999-----------970687883
Q gi|254780313|r   36 DPYVQRAQLEGWRARSAYKLLQINE--KHQI---L--QSN--RRIVDLGSSPGSWSQVAA-----------RITGSNANN   95 (227)
Q Consensus        36 D~y~~~Ak~~gyrsRaafKL~eId~--kf~l---~--k~g--~~VlDLGaaPGgWsQva~-----------~~~~~~~~~   95 (227)
                      |-++---..--+-+=|.|.|.-|.-  |--|   +  .++  ..+||+||-+--=.++..           ...+..  +
T Consensus        97 da~VSaGnTGAl~a~a~~~l~~i~gi~RPaia~~~Pt~~~~~~~llD~GAN~~~~~~~L~qfA~mGs~ya~~v~~i~--~  174 (317)
T PRK05331         97 DACVSAGNTGALMAAALFVLGRLPGIDRPAIATILPTLNGGGTVLLDLGANVDCKPEHLVQFAVMGSVYAEAVLGIE--N  174 (317)
T ss_pred             CEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCC--C
T ss_conf             78995473899999999986120587764101114357997379996774787798999999999999999847999--9


Q ss_pred             EEEEEECCCCCCCCCCCEEEECCCCHHHHHHHHH--------------HHCCCCCCEEEECCCHHHCCC
Q ss_conf             2786411213334698178301122079999999--------------731388748975320211022
Q gi|254780313|r   96 TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIR--------------QAIGGNPDLVLSDMAYPTIGH  150 (227)
Q Consensus        96 ~~VigVDl~~~~~i~gv~~~~gDi~~~~~~~~i~--------------~~l~~~~DlVlSDmapn~SG~  150 (227)
                      ++| |  |+.+    |..-.+|+-.-.++.+.+.              +.+.+.+|||+||+   .|||
T Consensus       175 PrV-g--LLNi----G~E~~KG~~~~k~a~~lL~~~~~~nf~G~iEg~di~~g~~DVvV~DG---FtGN  233 (317)
T PRK05331        175 PRV-G--LLNI----GEEEIKGNELVKEAYELLKAAPSINFIGNVEGRDILKGTADVVVCDG---FVGN  233 (317)
T ss_pred             CEE-E--ECCC----CCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCEEEECC---CCCH
T ss_conf             828-7--6158----76566767999999999964999805801040114689997899289---5018


No 223
>PRK10846 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional
Probab=79.65  E-value=5.2  Score=20.50  Aligned_cols=66  Identities=18%  Similarity=0.154  Sum_probs=46.2

Q ss_pred             EEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC--EEEEEEECCCCHHHHHHHHHHHCCEEEEECCCCCCCCCC
Q ss_conf             975320211022210157889899988987641148774--699993059998999999986258469976866575582
Q gi|254780313|r  139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG--DFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESV  216 (227)
Q Consensus       139 VlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG--~fV~K~F~G~~~~~l~~~l~~~F~~V~~~KP~aSR~~S~  216 (227)
                      |+-|+|=|..|..        .|..     .+.-+.+++  .+|+=+....+...++..+...++.+..+.+...|..+.
T Consensus       299 iiLDgAHN~~aa~--------~L~~-----~l~~~~~~~k~~~V~g~l~dKD~~~~l~~L~~~~d~~~~~~~~~~Ra~~~  365 (416)
T PRK10846        299 VIFDVAHNPHAAE--------YLTG-----RLKALPKNGRVLAVIGMLHDKDIAGTLAWLKSVVDDWYCAPLEGPRGATA  365 (416)
T ss_pred             EEEECCCCHHHHH--------HHHH-----HHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCH
T ss_conf             7777785999999--------9999-----99960779968999841378999999998664468999958999777999


Q ss_pred             E
Q ss_conf             4
Q gi|254780313|r  217 E  217 (227)
Q Consensus       217 E  217 (227)
                      |
T Consensus       366 ~  366 (416)
T PRK10846        366 E  366 (416)
T ss_pred             H
T ss_conf             9


No 224
>pfam01358 PARP_regulatory Poly A polymerase regulatory subunit.
Probab=79.44  E-value=5.3  Score=20.46  Aligned_cols=98  Identities=20%  Similarity=0.239  Sum_probs=57.2

Q ss_pred             CCHHHHHHHHH--HH-----HHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC----CCCCCCEE
Q ss_conf             84479999999--99-----864583137967888504553068999997068788327864112133----34698178
Q gi|254780313|r   46 GWRARSAYKLL--QI-----NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM----EPILGVKF  114 (227)
Q Consensus        46 gyrsRaafKL~--eI-----d~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~----~~i~gv~~  114 (227)
                      .++...--||+  ||     ..+++++....+||=+|+|||.-.-+..+.-..-|..-+=+=+|..+-    +.+.+|.+
T Consensus        30 kfp~qGQlKLLl~El~FLs~l~~~~~l~g~~~IvYIGSapG~HI~~L~~~f~~~g~~IkW~LiD~r~h~~~L~~l~nV~l  109 (295)
T pfam01358        30 KLPYQGQLKLLLGELFFLNKLIRHNILDGIITVVYIGSAPGYHIRYLRDHFSDLGVIIKWMLIDGRGHDPSLEGLSDVSI  109 (295)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCHHHHCCCCEEE
T ss_conf             69886308999989999889987564468708999736887418999999997298579999769854467643577470


Q ss_pred             EECCCCHHHHHHHHHHHCCCCCCEEEECCCH
Q ss_conf             3011220799999997313887489753202
Q gi|254780313|r  115 FKFDFLDLDSWEFIRQAIGGNPDLVLSDMAY  145 (227)
Q Consensus       115 ~~gDi~~~~~~~~i~~~l~~~~DlVlSDmap  145 (227)
                      +. .++++.....+++..+.+ =+.+||+-.
T Consensus       110 ~~-~f~dE~~i~~lk~~~~~~-iilISDIRS  138 (295)
T pfam01358       110 VT-RFVDEKYLRLLKNQLNLK-ILLISDIRS  138 (295)
T ss_pred             HH-HHCCHHHHHHHHHCCCCC-EEEEEECCC
T ss_conf             26-546899999997115771-799952344


No 225
>PRK13846 putative glycerol-3-phosphate acyltransferase PlsX; Provisional
Probab=78.70  E-value=2.6  Score=22.40  Aligned_cols=92  Identities=15%  Similarity=0.249  Sum_probs=42.8

Q ss_pred             CHHHHHHHHHHHHH--HCCC------CCCCCEEEEEECCCCHHH----HHH-------HHHHCCCCCCEEEEEECCCCCC
Q ss_conf             44799999999986--4583------137967888504553068----999-------9970687883278641121333
Q gi|254780313|r   47 WRARSAYKLLQINE--KHQI------LQSNRRIVDLGSSPGSWS----QVA-------ARITGSNANNTRVVAIDILDME  107 (227)
Q Consensus        47 yrsRaafKL~eId~--kf~l------~k~g~~VlDLGaaPGgWs----Qva-------~~~~~~~~~~~~VigVDl~~~~  107 (227)
                      +-+=|.|-|--|..  +--|      .+....+||+||-+---.    |+|       ....+.  .+++| |+  +.+ 
T Consensus       110 ~ma~a~~~lg~i~gv~RPaia~~~Pt~~g~~~lLD~GANvd~~p~~L~qFA~MGs~ya~~~~~~--~~PrV-gL--LNi-  183 (316)
T PRK13846        110 LVTLARAKIPMFPAVPRPALLVSVPTMRGFAVILDVGANVSVNPEEMVGFARMGLAYRQCLGSN--QPPTI-GL--LNI-  183 (316)
T ss_pred             HHHHHHHHHHCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCC--CCCEE-EE--EEC-
T ss_conf             9999999870326987454533230789977999789787669999999999999999984699--99869-98--625-


Q ss_pred             CCCCCEEEECCCCHHHHHHHHHHH--------------CCCCCCEEEECCCHHHCCC
Q ss_conf             469817830112207999999973--------------1388748975320211022
Q gi|254780313|r  108 PILGVKFFKFDFLDLDSWEFIRQA--------------IGGNPDLVLSDMAYPTIGH  150 (227)
Q Consensus       108 ~i~gv~~~~gDi~~~~~~~~i~~~--------------l~~~~DlVlSDmapn~SG~  150 (227)
                         |..-.+|+-...++.+.+.+.              +.+.+|||+||+   +|||
T Consensus       184 ---G~E~~KG~~~~kea~~LL~~~~~~nF~GnvEg~di~~g~~DVvV~DG---FtGN  234 (316)
T PRK13846        184 ---GSEERKGTEAHRQTFRMLRETFGSAFLGNIESGDVFSGKVDIVVTDG---FTGN  234 (316)
T ss_pred             ---CCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCEEEECC---CHHH
T ss_conf             ---66454658999999999860866663665341325799984899288---4319


No 226
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=78.65  E-value=5.6  Score=20.31  Aligned_cols=47  Identities=21%  Similarity=0.237  Sum_probs=25.5

Q ss_pred             CEEEEEECCCC-----CCCCCCCEEEECCCC-HHHHHHHHHHHCCCCCCEEEECCCH
Q ss_conf             32786411213-----334698178301122-0799999997313887489753202
Q gi|254780313|r   95 NTRVVAIDILD-----MEPILGVKFFKFDFL-DLDSWEFIRQAIGGNPDLVLSDMAY  145 (227)
Q Consensus        95 ~~~VigVDl~~-----~~~i~gv~~~~gDi~-~~~~~~~i~~~l~~~~DlVlSDmap  145 (227)
                      +..|+++|+..     ....+++.+++||++ +.+..+   ..+ .++|+|++-+|.
T Consensus        26 ~~~V~~~d~~~~~~~~~~~~~~~~~~~gDi~~~~~~~~---~~~-~~~D~V~HlAa~   78 (347)
T PRK11908         26 DWEVYGMDMQTDRLGDLVNHPRMHFFEGDITINKEWIE---YHV-KKCDVVLPLVAI   78 (347)
T ss_pred             CCEEEEEECCCCCHHHHCCCCCEEEEECCCCCCHHHHH---HHH-CCCCEEEEEHHC
T ss_conf             97899997997636775579985999775446999999---766-059889752000


No 227
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=78.52  E-value=5.7  Score=20.28  Aligned_cols=99  Identities=24%  Similarity=0.325  Sum_probs=47.8

Q ss_pred             HHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC--CCC--------CCCEEEECCCCHHHHHHH
Q ss_conf             9864583137967888504553068999997068788327864112133--346--------981783011220799999
Q gi|254780313|r   58 INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM--EPI--------LGVKFFKFDFLDLDSWEF  127 (227)
Q Consensus        58 Id~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~--~~i--------~gv~~~~gDi~~~~~~~~  127 (227)
                      |+++... -.|.+|||+|+++|==+- |+-+.|..    .|++.|+-|.  ..+        -++.+...|+..      
T Consensus        71 i~~~Pet-VrgkrVLd~gagsgLvaI-Aaa~aGA~----~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g------  138 (218)
T COG3897          71 IDDHPET-VRGKRVLDLGAGSGLVAI-AAARAGAA----EVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG------  138 (218)
T ss_pred             HHCCCCC-CCCCEEEECCCCCCHHHH-HHHHHHHH----HHHHCCCCHHHHHHHHCCHHHCCCEEEEEECCCCC------
T ss_conf             7608631-036532441566670889-99985037----88762788478888530622156216774313368------


Q ss_pred             HHHHCCCCCCEEEE-CCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECC
Q ss_conf             99731388748975-320211022210157889899988987641148774699993059
Q gi|254780313|r  128 IRQAIGGNPDLVLS-DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG  186 (227)
Q Consensus       128 i~~~l~~~~DlVlS-Dmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G  186 (227)
                          -+..+|+||. |.-        .+|.-.    ...+. ....|...|+-|+ +|+-
T Consensus       139 ----~~~~~Dl~LagDlf--------y~~~~a----~~l~~-~~~~l~~~g~~vl-vgdp  180 (218)
T COG3897         139 ----SPPAFDLLLAGDLF--------YNHTEA----DRLIP-WKDRLAEAGAAVL-VGDP  180 (218)
T ss_pred             ----CCCCEEEEEEECEE--------CCCHHH----HHHHH-HHHHHHHCCCEEE-EECC
T ss_conf             ----98640389850300--------283588----98899-9999985797799-7289


No 228
>pfam02504 FA_synthesis Fatty acid synthesis protein. The plsX gene is part of the bacterial fab gene cluster which encodes several key fatty acid biosynthetic enzymes. The exact function of the plsX protein in fatty acid synthesis is unknown.
Probab=77.96  E-value=2.7  Score=22.30  Aligned_cols=93  Identities=17%  Similarity=0.313  Sum_probs=43.7

Q ss_pred             CCHHHHHHHHHHHHH--HCCCCC-----CC--CEEEEEECCCCHHHHHHHH-----------HHCCCCCCEEEEEECCCC
Q ss_conf             844799999999986--458313-----79--6788850455306899999-----------706878832786411213
Q gi|254780313|r   46 GWRARSAYKLLQINE--KHQILQ-----SN--RRIVDLGSSPGSWSQVAAR-----------ITGSNANNTRVVAIDILD  105 (227)
Q Consensus        46 gyrsRaafKL~eId~--kf~l~k-----~g--~~VlDLGaaPGgWsQva~~-----------~~~~~~~~~~VigVDl~~  105 (227)
                      -+.+=|.|.|.-|.-  +--|.-     .|  ..+||+||.+--=.+...+           ..+.  .+++| |  |+.
T Consensus       104 A~~a~a~~~l~~i~gi~RPai~~~~Pt~~g~~~~lLD~GANv~~~~~~L~qFA~mG~~ya~~~~~~--~~PrV-g--LLN  178 (322)
T pfam02504       104 ALMALAMLRLGRIKGITRPALGTELPTVNGKFTVLLDVGANVDCKPKELVQFALMGSVYAQSLLGI--DSPRV-G--LLN  178 (322)
T ss_pred             HHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCC--CCCCE-E--EEE
T ss_conf             999999998850058886446440455799758998478787779899999999999999997299--99808-7--875


Q ss_pred             CCCCCCCEEEECCCCHHHHHHHHHH--------------HCCCCCCEEEECCCHHHCCC
Q ss_conf             3346981783011220799999997--------------31388748975320211022
Q gi|254780313|r  106 MEPILGVKFFKFDFLDLDSWEFIRQ--------------AIGGNPDLVLSDMAYPTIGH  150 (227)
Q Consensus       106 ~~~i~gv~~~~gDi~~~~~~~~i~~--------------~l~~~~DlVlSDmapn~SG~  150 (227)
                      +    |..-.+|+-.-.++.+.+.+              .+.+.+|||+||+   .|||
T Consensus       179 i----G~E~~KG~~~~kea~~lL~~~~~~nf~GnvEg~~i~~g~~DVvV~DG---F~GN  230 (322)
T pfam02504       179 I----GEEEVKGNDLHKQTFKLLKATPGYNFLGNVEGRDILDGVVDVIVCDG---FTGN  230 (322)
T ss_pred             C----CCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCEEEECC---CCCH
T ss_conf             5----65454653999999999982899844500130105789984899488---4009


No 229
>KOG3924 consensus
Probab=77.49  E-value=3.7  Score=21.45  Aligned_cols=92  Identities=17%  Similarity=0.209  Sum_probs=59.3

Q ss_pred             HHHCCHHHHHHHHHHHHHHCCC-------CCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC----C-----
Q ss_conf             8818447999999999864583-------13796788850455306899999706878832786411213----3-----
Q gi|254780313|r   43 QLEGWRARSAYKLLQINEKHQI-------LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD----M-----  106 (227)
Q Consensus        43 k~~gyrsRaafKL~eId~kf~l-------~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~----~-----  106 (227)
                      ..++|+|=+.+++-|++..+-.       +.|++...|||++=|+---.++...+...    -+|+.+.+    +     
T Consensus       161 L~~hYk~~ss~~YGE~~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~----svG~eim~~pS~~a~~~~  236 (419)
T KOG3924         161 LNQHYKSFSSETYGETQLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKK----SVGFEIMDKPSQCAELNK  236 (419)
T ss_pred             HHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC----CCCEEEECCCHHHHHHHH
T ss_conf             9875235566305553399999999996369887234777651023678887534001----034054158478899999


Q ss_pred             -----------CCCCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf             -----------346981783011220799999997313887489753
Q gi|254780313|r  107 -----------EPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSD  142 (227)
Q Consensus       107 -----------~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSD  142 (227)
                                 ..+.-+.+++|+++++..+.+|..    .+++|++-
T Consensus       237 ~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~eI~~----eatvi~vN  279 (419)
T KOG3924         237 EEFKKLMKHFGKKPNKIETIHGSFLDPKRVTEIQT----EATVIFVN  279 (419)
T ss_pred             HHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHH----CCEEEEEE
T ss_conf             99999999847786721403635478888998863----05288870


No 230
>PRK01581 speE spermidine synthase; Validated
Probab=76.57  E-value=6.4  Score=19.94  Aligned_cols=99  Identities=16%  Similarity=0.131  Sum_probs=55.7

Q ss_pred             CCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC-CC-----------------CCCCEEEECCCCHHHHHHHHH
Q ss_conf             967888504553068999997068788327864112133-34-----------------698178301122079999999
Q gi|254780313|r   68 NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM-EP-----------------ILGVKFFKFDFLDLDSWEFIR  129 (227)
Q Consensus        68 g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~-~~-----------------i~gv~~~~gDi~~~~~~~~i~  129 (227)
                      -.+||=||.+-|-   .+.+...-.. --.|.-|||-|. ..                 -+.|+.+.+|.     ...+.
T Consensus       140 ~~rVLILGGGDGL---AlREVLKyp~-Ve~VTLVDLDP~mt~Lar~~p~L~~LN~~AL~DPRV~Vvn~DA-----f~wL~  210 (363)
T PRK01581        140 PKRVLILGGGDGL---ALREVLKYET-VLHVDLVDLDGSMIDMARNVPELVSLNKSAFFDNRVNTHVCDA-----KEFLS  210 (363)
T ss_pred             CCEEEEEECCCHH---HHHHHHCCCC-CCEEEEEECCHHHHHHHHHCHHHHHHHHHHCCCCCEEEEECCH-----HHHHH
T ss_conf             7738998076439---9999871798-5627899569999998751979987512001498049992108-----99986


Q ss_pred             HHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHH-HHHHHHCCCCCCEEEEEE
Q ss_conf             731388748975320211022210157889899988-987641148774699993
Q gi|254780313|r  130 QAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAA-TFFALEMLNIGGDFLVKT  183 (227)
Q Consensus       130 ~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~a-l~~A~~~Lk~gG~fV~K~  183 (227)
                      + -...||+|+-|+ |+.+      +.....|--.. -.+....|.++|.+|+-.
T Consensus       211 ~-~~~~FDvIIVDl-PDP~------n~~L~KLYS~eFY~Ll~~~La~dG~~vVQS  257 (363)
T PRK01581        211 S-PSSLYDVIIIDF-PDPA------TELLSTLYTSELFARIATFLTEDGAFVCQS  257 (363)
T ss_pred             C-CCCCCCEEEEEC-CCCC------CHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf             1-675442899958-9998------624666735999999998619885399960


No 231
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=76.27  E-value=5.1  Score=20.58  Aligned_cols=99  Identities=15%  Similarity=0.118  Sum_probs=57.7

Q ss_pred             EEEEEECCCCCCCCCCCEEEECCCCHHHHHHH-HHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             27864112133346981783011220799999-99731388748975320211022210157889899988987641148
Q gi|254780313|r   96 TRVVAIDILDMEPILGVKFFKFDFLDLDSWEF-IRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLN  174 (227)
Q Consensus        96 ~~VigVDl~~~~~i~gv~~~~gDi~~~~~~~~-i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk  174 (227)
                      |.|+|...-.++--.+...+.||+......-. -.+.. ...|+++.+.   |-|.....+.  -+.-..-++.....+.
T Consensus       141 GHilGsa~~~le~~~~~ilytGD~~~~~~~l~~~a~~~-~~~DvLI~Es---TYg~~~~~~r--~~~e~~f~~~v~~~l~  214 (427)
T COG1236         141 GHILGSAAILLEVDGGRILYTGDVKRRKDRLLNGAELP-PCIDVLIVES---TYGDRLHPNR--DEVERRFIESVKAALE  214 (427)
T ss_pred             CCCCCEEEEEEEECCCEEEEEECCCCCCCCCCCCCCCC-CCCCEEEEEC---CCCCCCCCCH--HHHHHHHHHHHHHHHH
T ss_conf             97410279999968947999823677778777776778-8887899806---5588778887--8999999999999875


Q ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHC
Q ss_conf             77469999305999899999998625
Q gi|254780313|r  175 IGGDFLVKTFQGGTTNDILCLLKKHF  200 (227)
Q Consensus       175 ~gG~fV~K~F~G~~~~~l~~~l~~~F  200 (227)
                      +||++|+=+|.-.-+++++..+..+-
T Consensus       215 ~GG~vlipafa~graQEll~~L~~~~  240 (427)
T COG1236         215 RGGTVLIPAFALGRAQELLLILRELG  240 (427)
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHHC
T ss_conf             79849994056708999999999752


No 232
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=76.20  E-value=3  Score=22.03  Aligned_cols=34  Identities=21%  Similarity=0.498  Sum_probs=21.9

Q ss_pred             HHCCHH-HHHHHHHHHHHHCCCCCCCCEEEEEECCCCH
Q ss_conf             818447-9999999998645831379678885045530
Q gi|254780313|r   44 LEGWRA-RSAYKLLQINEKHQILQSNRRIVDLGSSPGS   80 (227)
Q Consensus        44 ~~gyrs-RaafKL~eId~kf~l~k~g~~VlDLGaaPGg   80 (227)
                      -..|-| ||  -|.|+++.-.=|.|. ++||+|++||-
T Consensus        92 p~~Yasv~a--sL~~L~~~~~dfapq-siLDvG~GPgt  126 (484)
T COG5459          92 PQTYASVRA--SLDELQKRVPDFAPQ-SILDVGAGPGT  126 (484)
T ss_pred             HHHHHHHHH--HHHHHHHHCCCCCCC-HHHCCCCCCCH
T ss_conf             578999999--999999748886861-02003778752


No 233
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=76.07  E-value=6.6  Score=19.85  Aligned_cols=148  Identities=17%  Similarity=0.220  Sum_probs=73.4

Q ss_pred             CEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCC-C-EEEEC-CCCHHHHHHHHHHHCC-CCCCEEEECCC
Q ss_conf             6788850455306899999706878832786411213334698-1-78301-1220799999997313-88748975320
Q gi|254780313|r   69 RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILG-V-KFFKF-DFLDLDSWEFIRQAIG-GNPDLVLSDMA  144 (227)
Q Consensus        69 ~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~i~g-v-~~~~g-Di~~~~~~~~i~~~l~-~~~DlVlSDma  144 (227)
                      ++||=.|++-|   +.+.+-....+.+..|+|+|..+..|-.. + .++.. ...+++..+.+.+.+. .++|+|+.-.-
T Consensus         2 ~nILvt~~G~~---~~ii~~lk~~~~~~~Vi~~D~~~~a~~~~~aD~~y~~P~~~d~~y~~~ll~i~~~~~id~iiP~~d   78 (325)
T PRK12767          2 MNILVTSAGRR---VQLVKALKKSLLGGKVIGADISPLAPALYFADKFYVVPKVTDPNYIDALLDICKKENIDALIPLID   78 (325)
T ss_pred             CEEEEECCCCH---HHHHHHHHHCCCCCEEEEECCCCCCCCHHHCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEECCC
T ss_conf             48999867868---999999997699859999689989953445488998788898789999999999879999997785


Q ss_pred             HH---HC---------CCCCC-HHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHCCEEEEECCCCC
Q ss_conf             21---10---------22210-1578898999889876411487746999930599989999999862584699768665
Q gi|254780313|r  145 YP---TI---------GHRKI-DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVAS  211 (227)
Q Consensus       145 pn---~S---------G~~~~-D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~~~F~~V~~~KP~aS  211 (227)
                      +.   .+         |.+.. -....+++|..=. .....|+..|.=+-+.+.-....++.......+.-=-++||..+
T Consensus        79 ~El~~la~~~~~l~~~gi~v~~~~~e~i~~~~DK~-~~~~~l~~~gip~P~t~~~~~~~~~~~~~~~~~~fP~vvKP~~g  157 (325)
T PRK12767         79 PELPLLAQHRDEFKEIGVKVLVSSKEVIEICNDKW-LTYEFLKENGINTPKSYLPEDLEDLLKALAEELGFPLIVKPRDG  157 (325)
T ss_pred             HHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHCHH-HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCC
T ss_conf             02668999999999679989569799999854999-99999997599989820558999999999865699669853567


Q ss_pred             CCCCCEEEEE
Q ss_conf             7558249898
Q gi|254780313|r  212 RAESVEMFLL  221 (227)
Q Consensus       212 R~~S~E~Ylv  221 (227)
                      . .|+.++++
T Consensus       158 ~-gs~Gv~~i  166 (325)
T PRK12767        158 S-GSIGVFKV  166 (325)
T ss_pred             C-CCCCEEEE
T ss_conf             8-87754997


No 234
>COG0416 PlsX Fatty acid/phospholipid biosynthesis enzyme [Lipid metabolism]
Probab=75.52  E-value=2.5  Score=22.56  Aligned_cols=162  Identities=17%  Similarity=0.273  Sum_probs=74.0

Q ss_pred             HHHHHHHHCCCHHHHHHHHHC---------CHHHHHHHHHHHHH--HCCC-------CCCCCEEEEEECCCCHHHHHHHH
Q ss_conf             799999640899999998818---------44799999999986--4583-------13796788850455306899999
Q gi|254780313|r   26 SRDWLNRHINDPYVQRAQLEG---------WRARSAYKLLQINE--KHQI-------LQSNRRIVDLGSSPGSWSQVAAR   87 (227)
Q Consensus        26 s~~W~~r~~~D~y~~~Ak~~g---------yrsRaafKL~eId~--kf~l-------~k~g~~VlDLGaaPGgWsQva~~   87 (227)
                      |..|+.=.    +||+-+.+.         +-+=|-|+|--|..  |--|       -+.+..+||+||--..=.++..+
T Consensus        83 sSM~~A~~----lVkeg~ADa~VSAGnTGAlma~a~~~lg~i~gI~RPAi~~~~Pt~~~~~~~~LDvGANvd~~~~~L~q  158 (338)
T COG0416          83 SSMRVALD----LVKEGKADACVSAGNTGALMALALLKLGRIKGIDRPALATLLPTIDGGKTVVLDVGANVDCKPEHLVQ  158 (338)
T ss_pred             CHHHHHHH----HHHCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCHHHHHH
T ss_conf             57999999----98567677798468469999999987454778885511254435579814999678878889999999


Q ss_pred             ----------HHCCCCCCEEEEEECCCCCCCCCCCEEEECCCCHHHHHHHHHH--------------HCCCCCCEEEECC
Q ss_conf             ----------7068788327864112133346981783011220799999997--------------3138874897532
Q gi|254780313|r   88 ----------ITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQ--------------AIGGNPDLVLSDM  143 (227)
Q Consensus        88 ----------~~~~~~~~~~VigVDl~~~~~i~gv~~~~gDi~~~~~~~~i~~--------------~l~~~~DlVlSDm  143 (227)
                                .+... .+++| |  |+.+    |..-++|+=...++.+.+++              .+.|.+|+|+||+
T Consensus       159 fA~MG~~ya~~v~~~-~~PrV-g--LLNI----G~Ee~KG~e~~kea~~lLk~~~~~nF~GnvEg~di~~G~~DVvV~DG  230 (338)
T COG0416         159 FALMGSAYAEKVLGI-KNPRV-G--LLNI----GTEEIKGNELVKEAYELLKETPLINFIGNVEGRDILDGTVDVVVTDG  230 (338)
T ss_pred             HHHHHHHHHHHHCCC-CCCCE-E--EEEC----CCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCEEEECC
T ss_conf             999999999996288-99967-8--8756----55354587899999999974877753652254212368777899579


Q ss_pred             CHHHCCCCCC---------------HHHHH---HHHHHHHHHHHHHCC-------CCCCEE-------EEEEECCCCHHH
Q ss_conf             0211022210---------------15788---989998898764114-------877469-------999305999899
Q gi|254780313|r  144 AYPTIGHRKI---------------DHLRT---MSLCEAATFFALEML-------NIGGDF-------LVKTFQGGTTND  191 (227)
Q Consensus       144 apn~SG~~~~---------------D~~~~---~~L~~~al~~A~~~L-------k~gG~f-------V~K~F~G~~~~~  191 (227)
                         .|||-..               +....   ..|....+.=+++-+       ..||.+       |+|.--+.+...
T Consensus       231 ---FtGNv~LKt~EG~a~~i~~~lK~~~~~s~~~klgall~k~~~k~lk~k~d~~~~~Ga~llGl~giViKsHGsad~~a  307 (338)
T COG0416         231 ---FTGNVVLKTAEGTAKFILSLLKEEIKSSLKSKLGALLLKPALKRLKKKLDPSEYGGAVLLGLNGIVIKSHGSADARA  307 (338)
T ss_pred             ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCEEEEECCCCCHHH
T ss_conf             ---60189999877899999999999988768999999987568999987488664098278316724897168757899


Q ss_pred             HHHHHHHHCCE
Q ss_conf             99999862584
Q gi|254780313|r  192 ILCLLKKHFQK  202 (227)
Q Consensus       192 l~~~l~~~F~~  202 (227)
                      |...++.-.+.
T Consensus       308 ~~~AI~~a~~~  318 (338)
T COG0416         308 FASAIRQAYEM  318 (338)
T ss_pred             HHHHHHHHHHH
T ss_conf             99999999999


No 235
>TIGR00452 TIGR00452 methyltransferase, putative; InterPro: IPR010017   Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented.   Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order . Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI ), shared by other AdoMet-Mtases , is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments , although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases , , , . The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences .   This is a set of proteobacterial proteins, which have homology in their central region to a large number of methyltransferases active on a variety of substrates. .
Probab=74.75  E-value=3.8  Score=21.35  Aligned_cols=32  Identities=31%  Similarity=0.476  Sum_probs=22.0

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECC
Q ss_conf             7967888504553068999997068788327864112
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI  103 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl  103 (227)
                      .|.+|+|+||.-|-..   -+-++. |. -.+||+|-
T Consensus       121 ~~~~i~DVGC~~GY~~---~~M~~~-Ga-k~~VG~DP  152 (316)
T TIGR00452       121 KGRTILDVGCGSGYHL---WRMLGE-GA-KLLVGIDP  152 (316)
T ss_pred             CCCEEEEECCCCHHHH---HHHHHC-CC-CEEEECCH
T ss_conf             5777898336870688---977620-78-27874365


No 236
>pfam07757 AdoMet_MTase Predicted AdoMet-dependent methyltransferase. Proteins in this family have been predicted to function as AdoMet-dependent methyltransferases.
Probab=73.09  E-value=3.9  Score=21.28  Aligned_cols=51  Identities=25%  Similarity=0.353  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC
Q ss_conf             4799999999986458313796788850455306899999706878832786411213
Q gi|254780313|r   48 RARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD  105 (227)
Q Consensus        48 rsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~  105 (227)
                      .+=||| |+|+=++-.--.+-+..+||||+-|    ..+......|..|  .|+|...
T Consensus        40 laIAay-Li~LW~~~~~~~~~~~FvDlGCGNG----lLV~IL~~EGy~G--~GiD~R~   90 (112)
T pfam07757        40 LAIAAY-LIMLWRQTRSAESLQSFVDIGCGNG----LLVYILASEGYRG--YGIDLRK   90 (112)
T ss_pred             HHHHHH-HHHHHHHHHCCCCCCCEEEECCCCH----HHHHHHHHCCCCC--CCCCCCC
T ss_conf             999999-9999998614257885377147722----8999898678877--3314100


No 237
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=72.29  E-value=8.2  Score=19.27  Aligned_cols=156  Identities=22%  Similarity=0.261  Sum_probs=84.2

Q ss_pred             HHHHHHCCCHHHHHHHHH---CCHHHHHHHHHHHHHHCCCC--CCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEEC
Q ss_conf             999964089999999881---84479999999998645831--3796788850455306899999706878832786411
Q gi|254780313|r   28 DWLNRHINDPYVQRAQLE---GWRARSAYKLLQINEKHQIL--QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID  102 (227)
Q Consensus        28 ~W~~r~~~D~y~~~Ak~~---gyrsRaafKL~eId~kf~l~--k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVD  102 (227)
                      +|+.++    |...+.++   -|--|+.=+|+-     .++  .+..+|.|-+|+-||..-.+.+.++.......+.|.+
T Consensus       151 E~ll~~----fa~~~~k~~GEfyTP~~v~~liv-----~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE  221 (489)
T COG0286         151 EYLLRK----FAEAEGKEAGEFYTPREVSELIV-----ELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQE  221 (489)
T ss_pred             HHHHHH----HHHHHCCCCCCCCCHHHHHHHHH-----HHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf             999999----88862755786058799999999-----975776565234733540379999999997515550499895


Q ss_pred             CCCC-------CC-CCCC----EEEECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCC-CCCHH-----------H--
Q ss_conf             2133-------34-6981----78301122079999999731388748975320211022-21015-----------7--
Q gi|254780313|r  103 ILDM-------EP-ILGV----KFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGH-RKIDH-----------L--  156 (227)
Q Consensus       103 l~~~-------~~-i~gv----~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~-~~~D~-----------~--  156 (227)
                      +.+.       .- +.|+    ....+|-........  ....+++|.|++-  |..++. |..+.           .  
T Consensus       222 ~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~--~~~~~~~D~viaN--PPf~~~~w~~~~~~~~~~~~~~~~g~  297 (489)
T COG0286         222 INDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDD--KDDKGKFDFVIAN--PPFSGKGWGGDLLESEQDERFFFYGV  297 (489)
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC--CCCCCCEEEEECC--CCCCCCCCCCCCCCCCCCCHHCCCCC
T ss_conf             6688999999611662787422343344236873323--4665550168657--99554443443310024320002577


Q ss_pred             ----HHHHHHHHHHHHHHHCCCCCCEEEEE-----EECCCCHHHHHHHHHH
Q ss_conf             ----88989998898764114877469999-----3059998999999986
Q gi|254780313|r  157 ----RTMSLCEAATFFALEMLNIGGDFLVK-----TFQGGTTNDILCLLKK  198 (227)
Q Consensus       157 ----~~~~L~~~al~~A~~~Lk~gG~fV~K-----~F~G~~~~~l~~~l~~  198 (227)
                          ....+  +-+......|+|||..-+-     +|.|.....+++.+-.
T Consensus       298 ~~~~~~~d~--afi~h~~~~l~~~g~aaivl~~gvlfr~~~e~~IR~~l~~  346 (489)
T COG0286         298 FPTKNSADL--AFLQHILYKLKPGGRAAIVLPDGVLFRGGAEKDIRKDLLE  346 (489)
T ss_pred             CCCCCHHHH--HHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf             888952789--9999999971867705899258866277722579999875


No 238
>TIGR00755 ksgA dimethyladenosine transferase; InterPro: IPR011530   This family of proteins represent the rRNA adenine dimethylases (e.g. KsgA).    The bacterial enzyme KsgA catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In yeast, and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding.   The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB .; GO: 0016433 rRNA (adenine) methyltransferase activity, 0006364 rRNA processing.
Probab=72.23  E-value=7  Score=19.72  Aligned_cols=82  Identities=18%  Similarity=0.239  Sum_probs=51.6

Q ss_pred             HHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEE-EEEECCCC---------CC--CCCCCEEEECCCCHHHHH
Q ss_conf             9864583137967888504553068999997068788327-86411213---------33--469817830112207999
Q gi|254780313|r   58 INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTR-VVAIDILD---------ME--PILGVKFFKFDFLDLDSW  125 (227)
Q Consensus        58 Id~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~-VigVDl~~---------~~--~i~gv~~~~gDi~~~~~~  125 (227)
                      |-+.-++ .+++.||++|.+=|.=|..+.++..      + |+||-|.+         ..  ...++..+.||+...+..
T Consensus        21 Iv~~~~~-~~~~~vlEIGPG~G~LT~~Ll~~~~------~~v~aiEiD~~l~~~L~~~~~~~~~~~~~~i~~Dalk~~~~   93 (277)
T TIGR00755        21 IVEAANV-LENDVVLEIGPGLGALTEPLLKRAK------KLVTAIEIDPRLAEILRKLLSEKLYENLEVIEGDALKVDLN   93 (277)
T ss_pred             HHHHHCC-CCCCEEEEECCCCHHHHHHHHHHCC------CEEEEEEECHHHHHHHHHHCCCCCCCCEEEEECCEEEECCC
T ss_conf             9997437-8997799973882078999998259------84899972678999987521543324257871444541232


Q ss_pred             HHHHHHCC-CCCCEEEECCCHHHC
Q ss_conf             99997313-887489753202110
Q gi|254780313|r  126 EFIRQAIG-GNPDLVLSDMAYPTI  148 (227)
Q Consensus       126 ~~i~~~l~-~~~DlVlSDmapn~S  148 (227)
                       ...++.. ... .|+|-.=-|+|
T Consensus        94 -~~~~~~~~~~~-~vv~NLPY~Is  115 (277)
T TIGR00755        94 -SLEDFPKEDKL-KVVSNLPYNIS  115 (277)
T ss_pred             -HHHHCCCCCCC-EEEEECCCCHH
T ss_conf             -04331678985-79850774324


No 239
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=72.12  E-value=8.3  Score=19.24  Aligned_cols=115  Identities=14%  Similarity=0.164  Sum_probs=61.1

Q ss_pred             CCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCC-----------C------------CCCCEEEECCCCHH
Q ss_conf             379678885045530689999970687883278641121333-----------4------------69817830112207
Q gi|254780313|r   66 QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME-----------P------------ILGVKFFKFDFLDL  122 (227)
Q Consensus        66 k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~-----------~------------i~gv~~~~gDi~~~  122 (227)
                      .++.+|+==+|+-+-=..+.++      .+..|+|||+.+..           +            -+++.+++|||++.
T Consensus        36 ~~~~rVlVPlCGKs~Dm~wLa~------~G~~VvGvEls~~Av~~ff~e~~l~~~~~~~~~~~~y~~~~i~i~~gDfF~L  109 (218)
T PRK13255         36 PAGSRVLVPLCGKSLDMLWLAE------QGHEVLGVELSELAVEQFFAENGLTPQVRQSGEFEHYQAGEISLYCGDFFAL  109 (218)
T ss_pred             CCCCEEEEECCCCHHHHHHHHH------CCCEEEEEECHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCEEEEECCCCCC
T ss_conf             8898699948986776999984------8972699835299999999973898630136760377538827996642027


Q ss_pred             HHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCE--EEEEEEC-----CCCH----HH
Q ss_conf             99999997313887489753202110222101578898999889876411487746--9999305-----9998----99
Q gi|254780313|r  123 DSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD--FLVKTFQ-----GGTT----ND  191 (227)
Q Consensus       123 ~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~--fV~K~F~-----G~~~----~~  191 (227)
                      +..      .-+.+|.|.==+|. +    .++..  +.-  .=......+|++||.  +++=.++     |+-+    .+
T Consensus       110 ~~~------~~g~~DaIyDRaal-~----ALpp~--~R~--~Y~~~l~~ll~~g~~~LLitl~Y~q~~~~GPPFsv~~~E  174 (218)
T PRK13255        110 TAA------DLADVDAVYDRAAL-I----ALPEE--MRE--RYVQQLAALLPAGCRGLLVTLDYPQEELAGPPFSVSDEE  174 (218)
T ss_pred             CHH------HCCCCCEEEECCCE-E----CCCHH--HHH--HHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCHHH
T ss_conf             863------54774889975380-1----28989--999--999999986499874899998627655689699899999


Q ss_pred             HHHHHHHHCC
Q ss_conf             9999986258
Q gi|254780313|r  192 ILCLLKKHFQ  201 (227)
Q Consensus       192 l~~~l~~~F~  201 (227)
                      +.......|+
T Consensus       175 v~~ly~~~~~  184 (218)
T PRK13255        175 VEALFAGDFE  184 (218)
T ss_pred             HHHHHCCCCE
T ss_conf             9998437867


No 240
>TIGR01179 galE UDP-glucose 4-epimerase; InterPro: IPR005886    Synonym: UDP-galactose 4-epimerase UDP-glucose 4-epimerase (5.1.3.2 from EC) interconverts UDP-glucose and UDP-galactose which are precursors of glucose- and galactose-containing exopolysaccharides (EPS). A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded and described by a separate model. ; GO: 0003978 UDP-glucose 4-epimerase activity, 0006012 galactose metabolic process.
Probab=72.11  E-value=8.3  Score=19.24  Aligned_cols=58  Identities=19%  Similarity=0.198  Sum_probs=37.9

Q ss_pred             CCEEEECCCCHHHHHHHHHH--HCCCCCCEEEECCCHHHCCCCCCHHH---------HHHHHHHHHHHHH
Q ss_conf             81783011220799999997--31388748975320211022210157---------8898999889876
Q gi|254780313|r  111 GVKFFKFDFLDLDSWEFIRQ--AIGGNPDLVLSDMAYPTIGHRKIDHL---------RTMSLCEAATFFA  169 (227)
Q Consensus       111 gv~~~~gDi~~~~~~~~i~~--~l~~~~DlVlSDmapn~SG~~~~D~~---------~~~~L~~~al~~A  169 (227)
                      .+.|++||+.|....+.+.+  .+..++|.||+=+|--.=|. +++++         .++.|+++...+.
T Consensus        50 ~~~fv~gDL~D~~~l~~~f~kqql~~~idAViHFAg~~~VgE-Sv~~Pl~YY~NNv~nTl~L~~~m~~~G  118 (341)
T TIGR01179        50 EVTFVEGDLRDRELLRRVFEKQQLEHKIDAVIHFAGLIAVGE-SVQKPLKYYRNNVVNTLNLLEAMQETG  118 (341)
T ss_pred             CCEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             320587175157999999877431167546752011212525-575245440004689999999999818


No 241
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; InterPro: IPR001095 This entry contains the alpha subunit the acetyl coenzyme A carboxylase complex (). It catalyzes the first step in the synthesis of long-chain fatty acids which involves the carboxylation of acetyl-CoA to malonyl-CoA. The acetyl-CoA carboxylase complex () is a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase and two non-identical carboxyl transferase subunits (alpha and beta) in a 2:2 association . The reaction involves two steps:  Biotin carrier protein + ATP + HCO_3^- -> Carboxybiotin carrier protein + ADP + P_i   Carboxybiotin carrier protein + Acetyl-CoA -> Malonyl-CoA + Biotin carrier protein ; GO: 0003989 acetyl-CoA carboxylase activity, 0006633 fatty acid biosynthetic process, 0009317 acetyl-CoA carboxylase complex.
Probab=71.89  E-value=1.4  Score=24.09  Aligned_cols=59  Identities=24%  Similarity=0.504  Sum_probs=44.3

Q ss_pred             HHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEE-EECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCC
Q ss_conf             99998818447999999999864583137967888-504553068999997068788327864112133346
Q gi|254780313|r   39 VQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVD-LGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPI  109 (227)
Q Consensus        39 ~~~Ak~~gyrsRaafKL~eId~kf~l~k~g~~VlD-LGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~i  109 (227)
                      +=++.=+||  |=|.+|.|.=+||++  |=-+.+| =||.||    +.++.-|    ++.-||.-|.+|..+
T Consensus       137 FGMP~P~GY--RKALrLm~~AerF~~--PIi~fiDT~GAYPG----igAEerG----QsEAIA~NL~Ema~L  196 (329)
T TIGR00513       137 FGMPAPEGY--RKALRLMKMAERFNL--PIITFIDTPGAYPG----IGAEERG----QSEAIAKNLREMARL  196 (329)
T ss_pred             CCCCCCCCH--HHHHHHHHHHHHCCC--CEEEEECCCCCCCC----CHHHHHC----CHHHHHHHHHHHHCC
T ss_conf             798879604--799999987776179--85886538888756----2044505----278999998997109


No 242
>TIGR03675 arCOG00543 arCOG01782 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=71.84  E-value=8.4  Score=19.20  Aligned_cols=86  Identities=16%  Similarity=0.194  Sum_probs=52.6

Q ss_pred             EEEECCCCHHHHHHHHHHH--CCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHH
Q ss_conf             7830112207999999973--13887489753202110222101578898999889876411487746999930599989
Q gi|254780313|r  113 KFFKFDFLDLDSWEFIRQA--IGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTN  190 (227)
Q Consensus       113 ~~~~gDi~~~~~~~~i~~~--l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~  190 (227)
                      ..+.||+.-..+.- +...  ...++|+++..   .|-|.++.-|.--.+.-..-+.....++..||+.++=+|.=...+
T Consensus       341 ilfTGD~~~~~~rl-l~~A~~~~~~~D~LI~E---STYG~r~~~h~~r~e~e~~l~~~I~et~~rGGkVLIPaFAvGRaQ  416 (630)
T TIGR03675       341 IVYTGDFKYEKTRL-LDPAVNKFPRVETLIME---STYGGRDDYQPSREEAEKELIKVVNETIKRGGKVLIPVFAVGRAQ  416 (630)
T ss_pred             EEEECCCCCCCCCC-CCCCCCCCCCCCEEEEE---CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHH
T ss_conf             99959989997767-68756787777789997---435776556899899999999999999963982999863365389


Q ss_pred             HHHHHHHHHCCE
Q ss_conf             999999862584
Q gi|254780313|r  191 DILCLLKKHFQK  202 (227)
Q Consensus       191 ~l~~~l~~~F~~  202 (227)
                      +++..|..+.++
T Consensus       417 Ell~iL~e~~~~  428 (630)
T TIGR03675       417 EVMLVLEEAMRK  428 (630)
T ss_pred             HHHHHHHHHHHC
T ss_conf             999999999973


No 243
>PRK03612 spermidine synthase; Provisional
Probab=71.54  E-value=8.5  Score=19.16  Aligned_cols=124  Identities=16%  Similarity=0.142  Sum_probs=70.3

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCC-------C-----------CCCCEEEECCCCHHHHHHHH
Q ss_conf             79678885045530689999970687883278641121333-------4-----------69817830112207999999
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME-------P-----------ILGVKFFKFDFLDLDSWEFI  128 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~-------~-----------i~gv~~~~gDi~~~~~~~~i  128 (227)
                      +-.+||=||.+-|+   .+.+.....+ --+|.-|||.|.-       |           -|.++.+.+     |....+
T Consensus       293 ~p~~VLiiGGGdG~---a~revLk~~~-ve~v~lVelD~~vv~lar~~~~l~~~n~~a~~DpRv~v~~~-----Da~~~l  363 (516)
T PRK03612        293 RARRVLILGGGDGL---ALREVLKYPD-VEQVTLVDLDPAVTELARTSPALRALNGGALDDPRVTVVND-----DAFNWL  363 (516)
T ss_pred             CCCEEEEECCCCCH---HHHHHHCCCC-CCEEEEEECCHHHHHHHHHCCCHHHHHCCCCCCCCEEEEEH-----HHHHHH
T ss_conf             97738998377608---7999864899-66378995188999999857214444123234996489853-----789999


Q ss_pred             HHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE----ECCCCHHHHHHHHHHHCCEEE
Q ss_conf             9731388748975320211022210157889899988987641148774699993----059998999999986258469
Q gi|254780313|r  129 RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT----FQGGTTNDILCLLKKHFQKVI  204 (227)
Q Consensus       129 ~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~----F~G~~~~~l~~~l~~~F~~V~  204 (227)
                      ++ ...++|+|+.|. |+-++.... ..-+.|    =-..+.+.|+++|.+|+-.    |.-..+-.+.+-++..|-.|.
T Consensus       364 ~~-~~~~yDvIi~D~-pdP~~~~~~-~LYs~e----FY~~~~~~L~~~G~~v~qs~Sp~~~~~~f~~i~~T~~~~~~~~~  436 (516)
T PRK03612        364 RK-LPETFDAIIVDL-PDPSNPALG-KLYSVE----FYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGFATT  436 (516)
T ss_pred             HH-CCCCCCEEEEEC-CCCCCCCCC-CCCCHH----HHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf             86-888788899818-997995224-675399----99999984499958999368975522034689999998388041


Q ss_pred             EE
Q ss_conf             97
Q gi|254780313|r  205 HV  206 (227)
Q Consensus       205 ~~  206 (227)
                      .+
T Consensus       437 ~y  438 (516)
T PRK03612        437 PY  438 (516)
T ss_pred             CC
T ss_conf             32


No 244
>PRK06398 aldose dehydrogenase; Validated
Probab=71.47  E-value=8.6  Score=19.15  Aligned_cols=78  Identities=18%  Similarity=0.212  Sum_probs=51.0

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEECCCCHHHHHHHHHHHCC---CCCCEEEECC
Q ss_conf             7967888504553068999997068788327864112133346981783011220799999997313---8874897532
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG---GNPDLVLSDM  143 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~i~gv~~~~gDi~~~~~~~~i~~~l~---~~~DlVlSDm  143 (227)
                      .|.++|=-|++-|==...| +.....  +.+|+.+|...-+....+.++++|+++++..+.+.+...   ++.|+++.-.
T Consensus         5 ~gKvalVTGgs~GIG~aia-~~la~~--Ga~V~~~~~~~~~~~~~~~~i~~Dvt~~~~v~~~v~~~~~~~G~iDiLVNNA   81 (256)
T PRK06398          5 RDKVVIVTGGSSGIGLAIV-SRFVDE--GSKVVSISRSEPEDINKSDHIKCDVTNEDEVKNAINEISKKYGRIDVLVNNA   81 (256)
T ss_pred             CCCEEEEECCCCHHHHHHH-HHHHHC--CCEEEEEECCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCEEEECC
T ss_conf             9898999687878999999-999986--9999999487512517223898547999999999999999839997999899


Q ss_pred             CHHH
Q ss_conf             0211
Q gi|254780313|r  144 AYPT  147 (227)
Q Consensus       144 apn~  147 (227)
                      +-..
T Consensus        82 G~~~   85 (256)
T PRK06398         82 GIEK   85 (256)
T ss_pred             CCCC
T ss_conf             9999


No 245
>TIGR01444 fkbM_fam methyltransferase, FkbM family; InterPro: IPR006342   Members of this group are characterised by two well-conserved short regions separated by a variable region in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterised as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548 ..
Probab=70.76  E-value=4.7  Score=20.79  Aligned_cols=34  Identities=29%  Similarity=0.461  Sum_probs=27.2

Q ss_pred             EEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC
Q ss_conf             788850455306899999706878832786411213
Q gi|254780313|r   70 RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD  105 (227)
Q Consensus        70 ~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~  105 (227)
                      +|+|+||.=|.|+-++++..+..  .++|+++.-+|
T Consensus         1 ~~~D~GAn~G~~~~~~~~~~~~~--~~~v~afEP~p   34 (142)
T TIGR01444         1 VVIDVGANIGDFSLYFARKGAEG--GGRVIAFEPLP   34 (142)
T ss_pred             CEEEECCCHHHHHHHHHHHCCCC--CCEEEEECCCH
T ss_conf             97870177047999999741788--73189986895


No 246
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=69.93  E-value=9.3  Score=18.94  Aligned_cols=94  Identities=24%  Similarity=0.271  Sum_probs=49.7

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC-----CCCCCCE-EEECCCCHHHHHHHHHHHCCC-CCC
Q ss_conf             137967888504553068999997068788327864112133-----3469817-830112207999999973138-874
Q gi|254780313|r   65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM-----EPILGVK-FFKFDFLDLDSWEFIRQAIGG-NPD  137 (227)
Q Consensus        65 ~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~-----~~i~gv~-~~~gDi~~~~~~~~i~~~l~~-~~D  137 (227)
                      +++|++||=.| +.||--+.+.+.....|  .+|++++-.+-     +. -|+. ...-|-.+.+..+.+.+..++ .+|
T Consensus       102 i~~g~~VlI~g-g~G~vG~~aiqlak~~G--a~Vi~t~~s~~k~~~~~~-lG~~~~~v~~~~~~~~~~~v~~~t~g~gvD  177 (288)
T smart00829      102 LRPGESVLIHA-AAGGVGQAAIQLAQHLG--AEVFATAGSPEKRDFLRE-LGIPDDHIFSSRDLSFADEILRATGGRGVD  177 (288)
T ss_pred             CCCCCEEEEEC-CCCHHHHHHHHHHHHCC--CCEEEEECCHHHHHHHHH-CCCCCCEEEECCCCCHHHHHHHHHCCCCCE
T ss_conf             89999999978-98677799999999739--830034088899999997-699960762179950999999870898827


Q ss_pred             EEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf             8975320211022210157889899988987641148774699
Q gi|254780313|r  138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL  180 (227)
Q Consensus       138 lVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV  180 (227)
                      +|+ |.    .|..             .+.-+.++|+++|.+|
T Consensus       178 vv~-d~----vgg~-------------~~~~~~~~l~~~G~~v  202 (288)
T smart00829      178 VVL-NS----LAGE-------------FLDASLRCLAPGGRFV  202 (288)
T ss_pred             EEE-EC----CCHH-------------HHHHHHHHHCCCCEEE
T ss_conf             999-89----8689-------------9999999753698899


No 247
>PRK10693 response regulator of RpoS; Provisional
Probab=68.34  E-value=9  Score=19.03  Aligned_cols=20  Identities=10%  Similarity=0.032  Sum_probs=9.2

Q ss_pred             CCCCEEEEEECCCCHHHHHH
Q ss_conf             37967888504553068999
Q gi|254780313|r   66 QSNRRIVDLGSSPGSWSQVA   85 (227)
Q Consensus        66 k~g~~VlDLGaaPGgWsQva   85 (227)
                      +|.-.++|+.----.-.+++
T Consensus        51 ~pDLIi~Dl~MP~mdGlell   70 (337)
T PRK10693         51 TPDLMICDIAMPRMNGLKFV   70 (337)
T ss_pred             CCCEEEEECCCCCCCHHHHH
T ss_conf             99999996899999989999


No 248
>pfam07942 N2227 N2227-like protein. This family features sequences that are similar to a region of hypothetical yeast gene product N2227. This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions.
Probab=67.96  E-value=8.9  Score=19.06  Aligned_cols=78  Identities=21%  Similarity=0.212  Sum_probs=43.3

Q ss_pred             CCCEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHH-HHHHHHHHHHHHHHCCCCCCEEEE----E-E
Q ss_conf             981783011220799999997313887489753202110222101578-898999889876411487746999----9-3
Q gi|254780313|r  110 LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLR-TMSLCEAATFFALEMLNIGGDFLV----K-T  183 (227)
Q Consensus       110 ~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~-~~~L~~~al~~A~~~Lk~gG~fV~----K-~  183 (227)
                      .+.....|||++.-.      .-.+.+|+|++=        ..+|.+. .++.    ++...++|+|||..|-    + -
T Consensus       145 ~~~sm~aGDF~e~y~------~~~~~~d~VvT~--------FFIDTA~Ni~~Y----i~tI~~lLkpgG~WIN~GPLlyh  206 (268)
T pfam07942       145 GNFSMCAGDFLEVYG------EDANSYDVVVTC--------FFIDTAHNVLEY----IDTIEKILKPGGHWINLGPLLYH  206 (268)
T ss_pred             CCEEEEEEEEEEECC------CCCCCCCEEEEE--------EEEECHHHHHHH----HHHHHHHHCCCCEEEECCCCCCC
T ss_conf             841487003589838------887822689999--------876646889999----99999983669889964670124


Q ss_pred             ECC--------CCHHHHHHHHHHH-CCEEEE
Q ss_conf             059--------9989999999862-584699
Q gi|254780313|r  184 FQG--------GTTNDILCLLKKH-FQKVIH  205 (227)
Q Consensus       184 F~G--------~~~~~l~~~l~~~-F~~V~~  205 (227)
                      |..        -..++++..++.. |+-++.
T Consensus       207 ~~~~~~~~siELs~eEi~~l~~~~GF~~~~~  237 (268)
T pfam07942       207 FEPLPDEMSIELSLEDIKRLATKRGFKDEKE  237 (268)
T ss_pred             CCCCCCCCCEECCHHHHHHHHHHCCCEEEEE
T ss_conf             5777887600068999999998569779988


No 249
>PRK07806 short chain dehydrogenase; Provisional
Probab=67.38  E-value=10  Score=18.61  Aligned_cols=112  Identities=17%  Similarity=0.074  Sum_probs=60.2

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---C----CCC----CCCEEEECCCCHHHHHHHHHHHCC--
Q ss_conf             796788850455306899999706878832786411213---3----346----981783011220799999997313--
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---M----EPI----LGVKFFKFDFLDLDSWEFIRQAIG--  133 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---~----~~i----~gv~~~~gDi~~~~~~~~i~~~l~--  133 (227)
                      .|.++|=-|++-|== +-+++.....|.  .|+-.+...   .    +.+    ..+..+++|+++++..+.+.+...  
T Consensus         5 ~gKvalVTGas~GIG-~aiA~~la~~Ga--~Vvi~~~~~~~~a~~~~~~i~~~g~~a~~~~~Dvtd~~~v~~l~~~~~~~   81 (248)
T PRK07806          5 PGKIALVTGSSRGIG-AEVAKYLAGAGA--HVVVNYRNKAARAEKVVAEIRAAGGRASAVGADLTDEASVAALMDAIRAE   81 (248)
T ss_pred             CCCEEEEECCCCHHH-HHHHHHHHHCCC--EEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf             998899937885999-999999998799--89998389568999999999961983999978999999999999999998


Q ss_pred             -CCCCEEEECCCHHHCCCCCCHHHHHHHH--HHHHHHHHHHCCCCCCEEEE
Q ss_conf             -8874897532021102221015788989--99889876411487746999
Q gi|254780313|r  134 -GNPDLVLSDMAYPTIGHRKIDHLRTMSL--CEAATFFALEMLNIGGDFLV  181 (227)
Q Consensus       134 -~~~DlVlSDmapn~SG~~~~D~~~~~~L--~~~al~~A~~~Lk~gG~fV~  181 (227)
                       ++.|+++.-.+.......+-|+....++  ....+..++..++.||..|.
T Consensus        82 ~G~iDiLVnNAg~~~~~~~~~~~~~~~n~~~~~~~~~~~~p~m~~gg~Ii~  132 (248)
T PRK07806         82 FGGLDALVLNASGGMESGMDPDYAMRLNRDAQRRLLTLALPLMPAGSRVVF  132 (248)
T ss_pred             CCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf             499989998999987789972268999989999999999977504978999


No 250
>PRK00107 gidB glucose-inhibited division protein B; Reviewed
Probab=67.28  E-value=11  Score=18.60  Aligned_cols=102  Identities=21%  Similarity=0.289  Sum_probs=58.3

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCC--------CC---CCCCCCEEEECCCCHHHHHHHHHHHCCCC
Q ss_conf             79678885045530689999970687883278641121--------33---34698178301122079999999731388
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL--------DM---EPILGVKFFKFDFLDLDSWEFIRQAIGGN  135 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~--------~~---~~i~gv~~~~gDi~~~~~~~~i~~~l~~~  135 (227)
                      +..+|+|+|++.|= --.......+   +..+.-||-.        .+   -.++||..+.+-+.+..        ...+
T Consensus        69 ~~~~vlDiGSGaGf-PGiplAI~~p---~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~--------~~~~  136 (216)
T PRK00107         69 KPIRVLDVGSGAGF-PGIPLAIARP---DLQVTLVDSLGKKIAFLRQVAAELGLKNVTVVHGRAEEFG--------QEEK  136 (216)
T ss_pred             CCCEEEECCCCCCC-HHHHHHHHCC---CCCEEEECHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCC--------CCCC
T ss_conf             58779970799994-2678999778---7729997387699999999999769998799863544046--------5678


Q ss_pred             CCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHH
Q ss_conf             74897532021102221015788989998898764114877469999305999899999998
Q gi|254780313|r  136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK  197 (227)
Q Consensus       136 ~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~  197 (227)
                      ||+|+|=+-.+.               ...++++..+|++||.|+  ++.|....+=+..++
T Consensus       137 fD~itsRAva~l---------------~~l~~~~~~~l~~~g~~i--~~KG~~~~~Ei~~a~  181 (216)
T PRK00107        137 FDVVTSRAVASL---------------SDLVELCLPLLKPGGRFL--ALKGQDPEEEIAELP  181 (216)
T ss_pred             CCEEEEEHHHCH---------------HHHHHHHHHHCCCCCEEE--EECCCCHHHHHHHHH
T ss_conf             668986054069---------------999999997548897999--987999599999989


No 251
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=66.71  E-value=11  Score=18.53  Aligned_cols=78  Identities=23%  Similarity=0.297  Sum_probs=48.3

Q ss_pred             CCCCEEEECCCCHHHHHHHHHHHCC---CCCCEEEECCCH----HHCCCCCCHHHH----------HHHHHHHHHHHHHH
Q ss_conf             6981783011220799999997313---887489753202----110222101578----------89899988987641
Q gi|254780313|r  109 ILGVKFFKFDFLDLDSWEFIRQAIG---GNPDLVLSDMAY----PTIGHRKIDHLR----------TMSLCEAATFFALE  171 (227)
Q Consensus       109 i~gv~~~~gDi~~~~~~~~i~~~l~---~~~DlVlSDmap----n~SG~~~~D~~~----------~~~L~~~al~~A~~  171 (227)
                      +.....+.+|+++.+..+.+...++   +++|.+++-+|.    ..+|. .+|..+          .+.+ .....-|..
T Consensus        55 ~~s~~v~~cDV~~d~~i~~~f~~i~~~~g~lD~lVHsIaFa~k~el~G~-~~dtsre~f~~a~~IS~YS~-~~lak~a~p  132 (259)
T COG0623          55 LGSDLVLPCDVTNDESIDALFATIKKKWGKLDGLVHSIAFAPKEELKGD-YLDTSREGFLIAMDISAYSF-TALAKAARP  132 (259)
T ss_pred             CCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHCCC-EECCCHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_conf             1677699667787689999999998760766479987314886781786-00067888877762547129-999999998


Q ss_pred             CCCCCCEEEEEEECCCC
Q ss_conf             14877469999305999
Q gi|254780313|r  172 MLNIGGDFLVKTFQGGT  188 (227)
Q Consensus       172 ~Lk~gG~fV~K~F~G~~  188 (227)
                      ++.+||+.|.=.|-|++
T Consensus       133 lM~~ggSiltLtYlgs~  149 (259)
T COG0623         133 LMNNGGSILTLTYLGSE  149 (259)
T ss_pred             HCCCCCCEEEEEECCCE
T ss_conf             51699717999721634


No 252
>PRK13699 putative methylase; Provisional
Probab=65.93  E-value=11  Score=18.43  Aligned_cols=41  Identities=7%  Similarity=0.183  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHH-HHHHHHCC
Q ss_conf             8898999889876411487746999930599989999-99986258
Q gi|254780313|r  157 RTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDIL-CLLKKHFQ  201 (227)
Q Consensus       157 ~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~-~~l~~~F~  201 (227)
                      .=.+|++..+    .....-|.+|+=-|-|+++..+. ..+.+.|-
T Consensus       148 KPv~L~e~lI----~~~S~~gdlVLDPF~GSGTT~vAA~~lgR~fI  189 (227)
T PRK13699        148 KPVTSLQPLI----ESFTHPNAIVLDPFAGSGSTCVAALQSGRRYI  189 (227)
T ss_pred             CCHHHHHHHH----HHCCCCCCEEEECCCCCCHHHHHHHHCCCCEE
T ss_conf             9299999999----95599999999779987589999998199489


No 253
>pfam05219 DREV DREV methyltransferase. This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown. However, these proteins appear to be related to other methyltransferases (Bateman A pers obs).
Probab=65.58  E-value=11  Score=18.39  Aligned_cols=29  Identities=24%  Similarity=0.330  Sum_probs=20.7

Q ss_pred             CEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECC
Q ss_conf             67888504553068999997068788327864112
Q gi|254780313|r   69 RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI  103 (227)
Q Consensus        69 ~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl  103 (227)
                      .++|||||+-|+-|...+....      .|.+-..
T Consensus        96 ~~LLDlGAGdG~VT~~la~~F~------~V~aTE~  124 (265)
T pfam05219        96 VTLLDLGAGDGEITLRMAPTFE------EVYATEL  124 (265)
T ss_pred             CEEEEECCCCCHHHHHHHHHHC------EEEEEEC
T ss_conf             6478835899789999997523------5888727


No 254
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=65.44  E-value=5.9  Score=20.18  Aligned_cols=117  Identities=23%  Similarity=0.234  Sum_probs=60.3

Q ss_pred             CCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCC------CCCCEEEECCCCHHHHHHHHHHHCCC-CCCEEE
Q ss_conf             96788850455306899999706878832786411213334------69817830112207999999973138-874897
Q gi|254780313|r   68 NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP------ILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVL  140 (227)
Q Consensus        68 g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~------i~gv~~~~gDi~~~~~~~~i~~~l~~-~~DlVl  140 (227)
                      ..+++||.|+=||.+. ..+..|   . -.+.++|+.+..-      .+...++.+||...+.     +.+.. .+|+++
T Consensus         3 ~~~~idLFsG~GG~~l-Gf~~ag---f-~~~~a~Eid~~a~~ty~~n~~~~~~~~~di~~~~~-----~~~~~~~~Dvli   72 (328)
T COG0270           3 KMKVIDLFAGIGGLSL-GFEEAG---F-EIVFANEIDPPAVATYKANFPHGDIILGDIKELDG-----EALRKSDVDVLI   72 (328)
T ss_pred             CCEEEEECCCCCHHHH-HHHHCC---C-EEEEEEECCHHHHHHHHHHCCCCCCHHHHHHHHCH-----HHCCCCCCCEEE
T ss_conf             8549986587565889-998649---8-48998746988999999858887420303766052-----223556763798


Q ss_pred             ECCCHHHC-----CCC-CCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEC------CCCHHHHHHHHHHH
Q ss_conf             53202110-----222-1015788989998898764114877469999305------99989999999862
Q gi|254780313|r  141 SDMAYPTI-----GHR-KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ------GGTTNDILCLLKKH  199 (227)
Q Consensus       141 SDmapn~S-----G~~-~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~------G~~~~~l~~~l~~~  199 (227)
                      .  +|.|.     |.+ ..|..|. .|......+ ...++| -.||+--=.      |..+..+.+.|+..
T Consensus        73 g--GpPCQ~FS~aG~r~~~~D~R~-~L~~~~~r~-I~~~~P-~~fv~ENV~gl~~~~~~~~~~i~~~L~~~  138 (328)
T COG0270          73 G--GPPCQDFSIAGKRRGYDDPRG-SLFLEFIRL-IEQLRP-KFFVLENVKGLLSSKGQTFDEIKKELEEL  138 (328)
T ss_pred             E--CCCCCCHHHHCCCCCCCCCHH-HHHHHHHHH-HHHHCC-CEEEEECCHHHHHCCHHHHHHHHHHHHHC
T ss_conf             5--899721334077667767334-769999999-996389-87999664666654416999999999875


No 255
>TIGR01230 agmatinase agmatinase, putative; InterPro: IPR005925    Members of this family include known and predicted examples of agmatinase (agmatine ureohydrolase, 3.5.3.11 from EC) and members of archaea, for which no definitive agmatinase sequence has yet been made available. However, archaeal sequences are phylogenetically close to the experimentally verified B. subtilis sequence. One species of Halobacterium has been demonstrated in vitro to produce agmatine from arginine, but no putrescine from ornithine, suggesting that arginine decarboxylase and agmatinase, rather than arginase and ornithine decarboxylase, lead from arginine to polyamine biosynthesis.; GO: 0008783 agmatinase activity, 0006596 polyamine biosynthetic process.
Probab=65.40  E-value=6  Score=20.11  Aligned_cols=56  Identities=14%  Similarity=0.293  Sum_probs=23.2

Q ss_pred             EEEECCCC---------HHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf             88504553---------0689999970687883278641121333469817830112207999999973
Q gi|254780313|r   72 VDLGSSPG---------SWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQA  131 (227)
Q Consensus        72 lDLGaaPG---------gWsQva~~~~~~~~~~~~VigVDl~~~~~i~gv~~~~gDi~~~~~~~~i~~~  131 (227)
                      ||=+.|||         +|.+.+....--....-+|+|.|+.++.|+-.    +..||...+-+.+++.
T Consensus       229 lDPAfAPGtGTPepgGl~~~e~~~S~~~~~~~~~~v~G~D~VEVaP~yD----~s~~T~~~AAKia~e~  293 (296)
T TIGR01230       229 LDPAFAPGTGTPEPGGLTSKELLNSLFVRALKEDNVVGFDVVEVAPVYD----QSEVTALTAAKIALEL  293 (296)
T ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEECCEEC----CHHHHHHHHHHHHHHH
T ss_conf             6878487888754898787999999998753024254557888523144----3366799999999999


No 256
>KOG0022 consensus
Probab=64.89  E-value=12  Score=18.31  Aligned_cols=77  Identities=19%  Similarity=0.302  Sum_probs=37.3

Q ss_pred             CCCCEEEEEECCCCHHHHH-HHHHHCCCCCCEEEEEECCCCCCCCC----CC-EEEEC-CCCHHHHHHHHHHHCCCCCCE
Q ss_conf             3796788850455306899-99970687883278641121333469----81-78301-122079999999731388748
Q gi|254780313|r   66 QSNRRIVDLGSSPGSWSQV-AARITGSNANNTRVVAIDILDMEPIL----GV-KFFKF-DFLDLDSWEFIRQAIGGNPDL  138 (227)
Q Consensus        66 k~g~~VlDLGaaPGgWsQv-a~~~~~~~~~~~~VigVDl~~~~~i~----gv-~~~~g-Di~~~~~~~~i~~~l~~~~Dl  138 (227)
                      +||.+|.=.|.+-=|-+-. -++..|    ..+|||||+++-+--.    |+ .|+.- |..+ ..++.|.+.-++.+| 
T Consensus       191 ~~GstvAVfGLG~VGLav~~Gaka~G----AsrIIgvDiN~~Kf~~ak~fGaTe~iNp~d~~~-~i~evi~EmTdgGvD-  264 (375)
T KOG0022         191 EPGSTVAVFGLGGVGLAVAMGAKAAG----ASRIIGVDINPDKFEKAKEFGATEFINPKDLKK-PIQEVIIEMTDGGVD-  264 (375)
T ss_pred             CCCCEEEEEECCHHHHHHHHHHHHCC----CCCEEEEECCHHHHHHHHHCCCCEECCHHHCCC-CHHHHHHHHHCCCCE-
T ss_conf             77987999905457889987677618----651799855878989987619502237033053-399999998668720-


Q ss_pred             EEECCCHHHCCCCC
Q ss_conf             97532021102221
Q gi|254780313|r  139 VLSDMAYPTIGHRK  152 (227)
Q Consensus       139 VlSDmapn~SG~~~  152 (227)
                          -+..++|+-+
T Consensus       265 ----ysfEc~G~~~  274 (375)
T KOG0022         265 ----YSFECIGNVS  274 (375)
T ss_pred             ----EEEEECCCHH
T ss_conf             ----8999558989


No 257
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=64.13  E-value=6.8  Score=19.78  Aligned_cols=65  Identities=18%  Similarity=0.198  Sum_probs=33.3

Q ss_pred             CCCCEEEEC-CCHHHCCCCCCHHHHHHHH--------HHHHHHHHHHCCCCCC-EEEEEEECCCCHHHHHHHHHH
Q ss_conf             887489753-2021102221015788989--------9988987641148774-699993059998999999986
Q gi|254780313|r  134 GNPDLVLSD-MAYPTIGHRKIDHLRTMSL--------CEAATFFALEMLNIGG-DFLVKTFQGGTTNDILCLLKK  198 (227)
Q Consensus       134 ~~~DlVlSD-mapn~SG~~~~D~~~~~~L--------~~~al~~A~~~Lk~gG-~fV~K~F~G~~~~~l~~~l~~  198 (227)
                      .++|+|+.| +.|+.+|.....+.+....        +..-.+.+..-++-|. .+++|=|.-+.+.+-+...+.
T Consensus        49 ~~pDLvLLDi~LPd~~Glell~~lr~~~~~~~VI~iTA~~d~~~~~~Al~~Ga~DYLvKPf~~erl~~~L~~y~~  123 (225)
T PRK10046         49 FKPGLILLDNYLPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ  123 (225)
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHH
T ss_conf             599999982898999799999999964879988999689999999999974998310289999999999999999


No 258
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=62.89  E-value=5.8  Score=20.19  Aligned_cols=27  Identities=22%  Similarity=0.246  Sum_probs=19.3

Q ss_pred             CCCCCCEEEEC-CCHHHCCCCCCHHHHH
Q ss_conf             13887489753-2021102221015788
Q gi|254780313|r  132 IGGNPDLVLSD-MAYPTIGHRKIDHLRT  158 (227)
Q Consensus       132 l~~~~DlVlSD-mapn~SG~~~~D~~~~  158 (227)
                      -...+|+|++| ..|+.+|.....+.+.
T Consensus        47 ~~~~~Dlil~D~~MP~~dG~el~~~ir~   74 (129)
T PRK10610         47 QAGGFGFVISDWNMPNMDGLELLKTIRA   74 (129)
T ss_pred             HHCCCCEEEEECCCCCCCHHHHHHHHHH
T ss_conf             8589999998189999989999999985


No 259
>PRK07578 short chain dehydrogenase; Provisional
Probab=60.37  E-value=14  Score=17.80  Aligned_cols=101  Identities=17%  Similarity=0.180  Sum_probs=56.2

Q ss_pred             CEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHC
Q ss_conf             67888504553068999997068788327864112133346981783011220799999997313887489753202110
Q gi|254780313|r   69 RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTI  148 (227)
Q Consensus        69 ~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDmapn~S  148 (227)
                      ++||=.|++-| -=.-+++.....   ..|+.+.-..       .-++.|+++++..+.+.+.+ +++|++++-.+....
T Consensus         1 MrVlVTGas~G-IG~aia~~la~~---~~vv~~~r~~-------~~~~~Dvtd~~~v~~~~~~~-G~iD~lVnnAG~~~~   68 (199)
T PRK07578          1 MKILVIGASGT-IGRAVVAELSAR---HEVITAGRSS-------GDVQVDITDPASIRALFEKV-GKVDAVVSAAGKVHF   68 (199)
T ss_pred             CEEEEECCCCH-HHHHHHHHHHCC---CCEEEEECCC-------CCEEEECCCHHHHHHHHHHH-CCCCEEEECCCCCCC
T ss_conf             97999998748-999999999679---9989983686-------77568588999999999962-999899988722679


Q ss_pred             C-CCCCHH---HHHHHHHH----HHHHHHHHCCCCCCEEEE
Q ss_conf             2-221015---78898999----889876411487746999
Q gi|254780313|r  149 G-HRKIDH---LRTMSLCE----AATFFALEMLNIGGDFLV  181 (227)
Q Consensus       149 G-~~~~D~---~~~~~L~~----~al~~A~~~Lk~gG~fV~  181 (227)
                      | ..+.+.   .+.++++.    ..+..+...|+.||+.|.
T Consensus        69 ~~~~~~~~e~~~~~~~~nl~g~~~l~~~~~~~l~~gGsIv~  109 (199)
T PRK07578         69 APLTEMTDEDFQLGLQSKLMGQINLVLIGQEYLNDGGSFTL  109 (199)
T ss_pred             CCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf             89487999897778720013899999999998760898568


No 260
>TIGR00959 ffh signal recognition particle protein; InterPro: IPR004780    The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , . SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane.    This entry represents various SRP subunits.; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle.
Probab=60.20  E-value=14  Score=17.78  Aligned_cols=117  Identities=21%  Similarity=0.229  Sum_probs=66.9

Q ss_pred             EEEEEECCCCHHHHHH----HH-HHCCCCCCEEEEEECCCCCCCCC---------CCEEEE-CCC-CH---H-HH-HHHH
Q ss_conf             7888504553068999----99-70687883278641121333469---------817830-112-20---7-99-9999
Q gi|254780313|r   70 RIVDLGSSPGSWSQVA----AR-ITGSNANNTRVVAIDILDMEPIL---------GVKFFK-FDF-LD---L-DS-WEFI  128 (227)
Q Consensus        70 ~VlDLGaaPGgWsQva----~~-~~~~~~~~~~VigVDl~~~~~i~---------gv~~~~-gDi-~~---~-~~-~~~i  128 (227)
                      .|+=+|=-=+|=|-.+    .. +....+.+..++|.|+..-..++         ||.++. -.- .+   | ++ ...+
T Consensus       104 vilmvGLQGsGKTTt~gKLA~~ll~kk~~~kvLLva~D~yRPAA~~QL~~Lg~Q~gVpvf~h~~~~~~p~~Pv~ia~~Al  183 (439)
T TIGR00959       104 VILMVGLQGSGKTTTAGKLALYLLKKKEGKKVLLVACDLYRPAAIEQLKVLGEQVGVPVFAHLGKGQSPDDPVEIARQAL  183 (439)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             89973137885788999999999998638970340321034789999999767528871100478889887789999999


Q ss_pred             HHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEE-EEEEECCCCHHHHHHH
Q ss_conf             973138874897532021102221015788989998898764114877469-9993059998999999
Q gi|254780313|r  129 RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF-LVKTFQGGTTNDILCL  195 (227)
Q Consensus       129 ~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~f-V~K~F~G~~~~~l~~~  195 (227)
                      ...=...+|+||.|-|    |.=.+|+..+.||..     .-..|+|.=++ |+=-..|.+.-.+-+.
T Consensus       184 ~~Ak~~~~D~vI~DTA----GRL~ID~~LM~EL~~-----iK~~~nP~EiLlVvDaM~GQdAvn~A~~  242 (439)
T TIGR00959       184 EEAKENGFDVVIVDTA----GRLQIDEELMEELAE-----IKEILNPDEILLVVDAMTGQDAVNTAKT  242 (439)
T ss_pred             HHHHHCCCCEEEEECC----CCHHHHHHHHHHHHH-----HHHHHCCCEEEECCHHCCHHHHHHHHHH
T ss_conf             9999748978997267----512555999999999-----9888688705412201021699999986


No 261
>PRK05872 short chain dehydrogenase; Provisional
Probab=59.78  E-value=14  Score=17.74  Aligned_cols=112  Identities=18%  Similarity=0.268  Sum_probs=60.1

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC--C----CCC-CCCEEEECCCCHHHHHHHHHHHCC---CCC
Q ss_conf             796788850455306899999706878832786411213--3----346-981783011220799999997313---887
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD--M----EPI-LGVKFFKFDFLDLDSWEFIRQAIG---GNP  136 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~--~----~~i-~gv~~~~gDi~~~~~~~~i~~~l~---~~~  136 (227)
                      .|.++|=-|++-|==...| +.....|  .+|+.+|+.+  .    +.+ ..+.++.+|+++.+..+.+.+...   ++.
T Consensus         8 ~gKvalITGassGIG~aiA-~~la~~G--a~Vvl~dr~~~~l~~~~~~lg~~~~~~~~DVtd~~~v~~~v~~i~~~~G~i   84 (296)
T PRK05872          8 DGKVVFVTGAARGVGAELA-RRLHARG--AKVALVDLEEAELAALAAELGDRVLTVVADVTDLAAMQAAAEEAVERFGGI   84 (296)
T ss_pred             CCCEEEEECCCCHHHHHHH-HHHHHCC--CEEEEEECCHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHCCC
T ss_conf             9987999271058999999-9999879--989999899999999999838873899982799999999999999971998


Q ss_pred             CEEEECCCHHHCC-CCCCHH---HHHHHHHHHHHHH----HH-HCCCCCCEEEE
Q ss_conf             4897532021102-221015---7889899988987----64-11487746999
Q gi|254780313|r  137 DLVLSDMAYPTIG-HRKIDH---LRTMSLCEAATFF----AL-EMLNIGGDFLV  181 (227)
Q Consensus       137 DlVlSDmapn~SG-~~~~D~---~~~~~L~~~al~~----A~-~~Lk~gG~fV~  181 (227)
                      |+++.-.+-...| ..+.|.   .+.++++......    ++ .+.+.+|..|.
T Consensus        85 DiLVnNAGi~~~~~~~~~~~e~~~~v~dVNl~G~~~~~ra~lp~m~~~~G~IVn  138 (296)
T PRK05872         85 DVVVANAGIASYGSVLQVDPAAFRRVIDVNLLGVFHTVRATLPAVIERRGYVLQ  138 (296)
T ss_pred             CEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf             787655625799764219989972584244599999999999999977998999


No 262
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=59.62  E-value=15  Score=17.72  Aligned_cols=43  Identities=7%  Similarity=0.077  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHHCCCCCCEEEEE------EEC----CC--CHHHHHHHHHHHCC
Q ss_conf             989998898764114877469999------305----99--98999999986258
Q gi|254780313|r  159 MSLCEAATFFALEMLNIGGDFLVK------TFQ----GG--TTNDILCLLKKHFQ  201 (227)
Q Consensus       159 ~~L~~~al~~A~~~Lk~gG~fV~K------~F~----G~--~~~~l~~~l~~~F~  201 (227)
                      +.|......+..-++...|..|.+      +|.    +.  .....+..+++...
T Consensus       155 i~LT~~E~~lL~~L~~~~g~vvsre~L~~~vwg~~~~~~~rtidv~I~rLRkKL~  209 (232)
T PRK10955        155 LELTGTEFTLLYLLAQHLGQVVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLP  209 (232)
T ss_pred             EECCHHHHHHHHHHHHCCCCEECHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf             9668999999999997899509799999997188988885829999999999541


No 263
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=59.13  E-value=15  Score=17.67  Aligned_cols=113  Identities=15%  Similarity=0.200  Sum_probs=56.2

Q ss_pred             CCCEEEEEECCCC-HHHHHHHHHHCCCCCCEEEEEECCC--------CCCCCCCCE-EEECCCCHHHHHHHHHHHCC---
Q ss_conf             7967888504553-0689999970687883278641121--------333469817-83011220799999997313---
Q gi|254780313|r   67 SNRRIVDLGSSPG-SWSQVAARITGSNANNTRVVAIDIL--------DMEPILGVK-FFKFDFLDLDSWEFIRQAIG---  133 (227)
Q Consensus        67 ~g~~VlDLGaaPG-gWsQva~~~~~~~~~~~~VigVDl~--------~~~~i~gv~-~~~gDi~~~~~~~~i~~~l~---  133 (227)
                      .|.++|=-|++-| |--.-+++.....|.  .|+-+...        ++..-.|.. ..+.|+++++..+.+.+.+.   
T Consensus         7 ~GK~alVTGaa~g~Gig~aia~~~~~~Ga--~V~i~~~~~~~~~~~~~l~~~~g~~~~~~~Dvt~~~~v~~~~~~~~~~~   84 (260)
T PRK06603          7 QGKKGLITGIANNMSISWAIAQLAKKHGA--ELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIKEKW   84 (260)
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHHHCCC--EEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf             99989998999966899999999998799--9999668679999999999843837698657999999999999999986


Q ss_pred             CCCCEEEECCCHH----HCCC---CCC-HHHHHHHHHHHH----HHHHHHCCCCCCEEEE
Q ss_conf             8874897532021----1022---210-157889899988----9876411487746999
Q gi|254780313|r  134 GNPDLVLSDMAYP----TIGH---RKI-DHLRTMSLCEAA----TFFALEMLNIGGDFLV  181 (227)
Q Consensus       134 ~~~DlVlSDmapn----~SG~---~~~-D~~~~~~L~~~a----l~~A~~~Lk~gG~fV~  181 (227)
                      +++|+++.-++..    ..+.   .+. |-...++++...    ...+...++.+|..|.
T Consensus        85 G~iDiLVnnag~~~~~~~~~~~~d~~~~~~~~~~~~n~~~~~~~~~~a~~~m~~~GsIi~  144 (260)
T PRK06603         85 GSFDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHDGGSIVT  144 (260)
T ss_pred             CCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             997789964423777656775102989999999999989999999997787417973023


No 264
>pfam05891 Hydroxy-O-Methy Putative hydroxyindole-O-methyltransferase. This family of proteins is a putative hydroxyindole-O-methyltransferase and by homology, is expected to catalyse the conversion of N-acetyl serotonin to melatonin. The protein is expressed in the tail neuron PVT and in uterine cells [worm-base].
Probab=58.17  E-value=15  Score=17.56  Aligned_cols=93  Identities=20%  Similarity=0.232  Sum_probs=42.6

Q ss_pred             CEEEEEECCCCHHHHH-HHHHHCCCCCCEEEEEECCCCCCCCCC----C-------EEEECCCCHHHHHHHHHHHCCCCC
Q ss_conf             6788850455306899-999706878832786411213334698----1-------783011220799999997313887
Q gi|254780313|r   69 RRIVDLGSSPGSWSQV-AARITGSNANNTRVVAIDILDMEPILG----V-------KFFKFDFLDLDSWEFIRQAIGGNP  136 (227)
Q Consensus        69 ~~VlDLGaaPGgWsQv-a~~~~~~~~~~~~VigVDl~~~~~i~g----v-------~~~~gDi~~~~~~~~i~~~l~~~~  136 (227)
                      ...||+||+=|=-|.- .....         =-||+.+  |++.    +       .--.++++....++...  -.+++
T Consensus        57 ~~alDcGAGIGRVTk~lL~~~f---------~~VDlVE--pv~~Fl~~ak~~l~~~~~~~~~~~~~gLQdf~P--~~~~Y  123 (217)
T pfam05891        57 LVALDCGAGIGRVTKNLLLPLF---------SKVDLVE--PVEDFLAKAKEYLAEEKKKVGNFFCVGLQDFTP--EEGRY  123 (217)
T ss_pred             CEEEECCCCCCEECHHHHHHHC---------CEEEEEC--CCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCC--CCCEE
T ss_conf             2665426763611266788754---------8135754--449999999998740379765389736101689--99817


Q ss_pred             CEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf             48975320211022210157889899988987641148774699993
Q gi|254780313|r  137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT  183 (227)
Q Consensus       137 DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~  183 (227)
                      |+|-+-=   +.|+ -+|.    +|+. =|.-|..-|++||..|+|=
T Consensus       124 D~IW~QW---~~gh-LtD~----dlv~-Fl~RCk~~L~~~G~IvvKE  161 (217)
T pfam05891       124 DLIWIQW---CIGH-LTDE----DLVA-FLKRCKSGLKPNGIIVIKE  161 (217)
T ss_pred             EEEEEHH---HHCC-CCHH----HHHH-HHHHHHHHCCCCCEEEEEE
T ss_conf             6998058---4521-8889----9999-9999998478986499842


No 265
>pfam01555 N6_N4_Mtase DNA methylase. Members of this family are DNA methylases. The family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases.
Probab=57.75  E-value=16  Score=17.52  Aligned_cols=41  Identities=22%  Similarity=0.267  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHH-HHHHHHCC
Q ss_conf             8898999889876411487746999930599989999-99986258
Q gi|254780313|r  157 RTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDIL-CLLKKHFQ  201 (227)
Q Consensus       157 ~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~-~~l~~~F~  201 (227)
                      .-.+|.+..+    ......|..|+=-|-|+++..+. ..+.+.|-
T Consensus       166 kP~~L~~~~I----~~~s~~gd~VlDpF~GSGTT~~Aa~~l~R~~i  207 (221)
T pfam01555       166 KPEALLERLI----LASTNPGDIVLDPFAGSGTTGAAAKELGRNFI  207 (221)
T ss_pred             CCHHHHHHHH----HHCCCCCCEEEECCCCCHHHHHHHHHHCCEEE
T ss_conf             9599999999----97099979999899982799999998299599


No 266
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=56.87  E-value=16  Score=17.43  Aligned_cols=112  Identities=15%  Similarity=0.201  Sum_probs=61.8

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC--CCCCCCCEEEECCCCHHHHHHHHHHHCC---CCCCEEEE
Q ss_conf             796788850455306899999706878832786411213--3346981783011220799999997313---88748975
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD--MEPILGVKFFKFDFLDLDSWEFIRQAIG---GNPDLVLS  141 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~--~~~i~gv~~~~gDi~~~~~~~~i~~~l~---~~~DlVlS  141 (227)
                      .|.++|=.|++.|==...|.++. ..|  .+|+.+|...  ...-..+..++.|+++++..+.+.+...   ++.|+++.
T Consensus         7 ~gK~alITG~s~GIG~aia~~la-~~G--a~V~~~~r~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDilVn   83 (253)
T PRK08220          7 SGKTVWVTGAAQGIGYAVALAFV-EAG--AKVIGFDQAFEQLNEQYPFATFVLDVADAAAVAQVCQRLLAETGPLDVLVN   83 (253)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHH-HCC--CEEEEEECCHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf             99989995885689999999999-879--999999788778748997799997379999999999999997399888998


Q ss_pred             CCCHHHCCC-CCCH---HHHHHHHHHHHH----HHHHHCCC--CCCEEEE
Q ss_conf             320211022-2101---578898999889----87641148--7746999
Q gi|254780313|r  142 DMAYPTIGH-RKID---HLRTMSLCEAAT----FFALEMLN--IGGDFLV  181 (227)
Q Consensus       142 Dmapn~SG~-~~~D---~~~~~~L~~~al----~~A~~~Lk--~gG~fV~  181 (227)
                      -.+....|. .+.+   -...++++....    ..+...++  .+|..|.
T Consensus        84 nAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~~~G~IV~  133 (253)
T PRK08220         84 VAGVLRMGATDSLSDEDWQQTFAVNAGGVFNLSRAVMPQFRRQRGGAIVT  133 (253)
T ss_pred             CCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf             99878999804499999999999974638999999998777738965999


No 267
>pfam10356 DUF2034 Protein of unknown function (DUF2034). This protein is expressed in fungi but its function is unknown.
Probab=56.61  E-value=16  Score=17.40  Aligned_cols=90  Identities=12%  Similarity=0.172  Sum_probs=53.1

Q ss_pred             EEEECCCCHHHHHHHHHHHCCCCCCEEEE----CCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC-----------
Q ss_conf             78301122079999999731388748975----320211022210157889899988987641148774-----------
Q gi|254780313|r  113 KFFKFDFLDLDSWEFIRQAIGGNPDLVLS----DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG-----------  177 (227)
Q Consensus       113 ~~~~gDi~~~~~~~~i~~~l~~~~DlVlS----Dmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG-----------  177 (227)
                      +.++|-.++..+...+.++++. +++.-+    |.+-|.-|.|+.++...++.......++.. ++.||           
T Consensus         2 tv~~GT~yE~~v~~~L~~~Ln~-~~L~~~GG~~D~GiDl~G~W~l~~~~~~~~~~~~~~~~~~-~~~~~~~~kp~~~~~~   79 (185)
T pfam10356         2 TVFRGTLYELTVQRELHKKLNS-FSLRRVGGAYDGGVDIVGKWNLPDIWEIERDMPVDEFPSK-LKCGSIRLKPLKYRII   79 (185)
T ss_pred             CEEEECHHHHHHHHHHHHHHCC-CCEEEECCCCCCCCEEEEEEECCCHHHHHHCCCCCCCCCH-HCCCCCCCCCCCCCCC
T ss_conf             3356014399999999975273-5516634767887107888608867765330332223301-0147654454323334


Q ss_pred             -------EEE-EEEECCCCHHHHHHHHHHHCCEEE
Q ss_conf             -------699-993059998999999986258469
Q gi|254780313|r  178 -------DFL-VKTFQGGTTNDILCLLKKHFQKVI  204 (227)
Q Consensus       178 -------~fV-~K~F~G~~~~~l~~~l~~~F~~V~  204 (227)
                             .+| ||.|...-...+++.|.-.|....
T Consensus        80 ~~~~~l~VLVQCKa~~~Ki~p~~vREL~G~~~~~~  114 (185)
T pfam10356        80 PLAPPLRVLVQCKALKKKIGPRLVRELEGTFSSHV  114 (185)
T ss_pred             CCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf             56788459998627777798668887764786543


No 268
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=56.28  E-value=17  Score=17.37  Aligned_cols=98  Identities=17%  Similarity=0.219  Sum_probs=58.3

Q ss_pred             HHHHHCCCHHHHHHHHHCC-HHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC-
Q ss_conf             9996408999999988184-47999999999864583137967888504553068999997068788327864112133-
Q gi|254780313|r   29 WLNRHINDPYVQRAQLEGW-RARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM-  106 (227)
Q Consensus        29 W~~r~~~D~y~~~Ak~~gy-rsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~-  106 (227)
                      |--. ..|.|..+-+.+.+ .|+-++--.    -.+=..+-.+++++||-=|-=+..+..+.+    ...+.||+|..- 
T Consensus         9 Wage-FG~~Yi~RN~~~~~~~sn~~~f~~----~l~~~~~ikSilE~GcNIGlNL~ALk~L~P----~~~l~gIEIN~~A   79 (204)
T TIGR03587         9 WAGE-FGKEYIDRNSRQSLVAAKLAMFAR----ALNRLPKIASILELGANIGMNLAALKRLLP----FKHIYGVEINEYA   79 (204)
T ss_pred             HHHH-HCHHHHHHCCCHHHHHHHHHHHHH----HHHCCCCCCEEEEECCCCCHHHHHHHHHCC----CCEEEEEECCHHH
T ss_conf             5033-366877727734778889999999----983578888268966884776999987487----4404999539999


Q ss_pred             -----CCCCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf             -----3469817830112207999999973138874897532
Q gi|254780313|r  107 -----EPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDM  143 (227)
Q Consensus       107 -----~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDm  143 (227)
                           +.++.+...+|.|.+..        ...++|+|++.+
T Consensus        80 ~~~lk~~~~~~~i~n~SIld~~--------~~~~~DLv~t~G  113 (204)
T TIGR03587        80 VEKAKAYLPNINIIQGSLFDPF--------KDNFFDLVLTKG  113 (204)
T ss_pred             HHHHHHHCCCCEEEECCCCCCC--------CCCCEEEEEEEE
T ss_conf             9999865897269965334667--------787423899830


No 269
>pfam10237 N6-adenineMlase Probable N6-adenine methyltransferase. This is a protein of approximately 200 residues which is conserved from plants to humans. It contains a highly conserved QFW motif close to the N-terminus and a DPPF motif in the centre. The DPPF motif is characteristic of N-6 adenine-specific DNA methylases, and this family is found in eukaryotes.
Probab=56.24  E-value=17  Score=17.36  Aligned_cols=133  Identities=17%  Similarity=0.213  Sum_probs=74.3

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCHH
Q ss_conf             79678885045530689999970687883278641121333469817830112207999999973138874897532021
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYP  146 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDmapn  146 (227)
                      ++ ..+-+=|+|--|-.+  +..........++-.|-.- + ..|-.|+.=|+.++..   +.+.+.+.+|+|+.|  |.
T Consensus        25 ~~-~~IA~lS~PSly~~l--~~~~~~~~~v~LfEyD~RF-~-~~~~~FvfYDyn~P~~---lp~~l~~~fD~vi~D--PP   94 (161)
T pfam10237        25 EG-TVIACVSAPSVYAAL--KERPIPTKNVYLLEYDKRF-A-VYGGEFVFYDYNKPLE---LPEQLKGKFDRVIAD--PP   94 (161)
T ss_pred             CC-CEEEEECCCHHHHHH--HHCCCCCCCEEEEEECHHH-H-HCCCCEEECCCCCCCC---CHHHHHCCCCEEEEC--CC
T ss_conf             99-879998586899999--8434887737996543058-7-6799416777898010---879970867889989--99


Q ss_pred             HCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEE
Q ss_conf             1022210157889899988987641148774699993059998999999986258469976866575582498983
Q gi|254780313|r  147 TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLA  222 (227)
Q Consensus       147 ~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~~~F~~V~~~KP~aSR~~S~E~Ylv~  222 (227)
                      .         .+.+........+..+++++|.++.  -.|....+++..+-.  -+...|.|.-.|+=+-|.+..+
T Consensus        95 F---------Lseec~~K~a~t~~~L~k~~~kli~--~Tg~~~~~~~~kll~--~~~~~F~P~h~~~L~Nef~~y~  157 (161)
T pfam10237        95 F---------LSEECLTKTAITIKLLLKPDSKLLL--CTGERMEDLAAKLLG--LKITDFLPEHERNLSNEFRCYA  157 (161)
T ss_pred             C---------CCHHHHHHHHHHHHHHHCCCCEEEE--ECHHHHHHHHHHHCC--CEEEEEEECCCCCCCCEEEEEE
T ss_conf             9---------8999999999999998089987999--348999999999729--8241257056677744057774


No 270
>TIGR00138 gidB methyltransferase GidB; InterPro: IPR003682   GidB (glucose-inhibited division protein B) appears to be present and in a single copy in all complete eubacterial genomes so far. Its mode of action is unknown, but a methytransferase fold is reported from the crystal structure. It may be a family of bacterial glucose inhibited division proteins that are involved in the regulation of cell division .; GO: 0007049 cell cycle.
Probab=56.11  E-value=7.1  Score=19.65  Aligned_cols=108  Identities=19%  Similarity=0.353  Sum_probs=57.5

Q ss_pred             HHHHHHCCCCC---CCCEEEEEECCCCHHHHHHHH-HHCCCCCCEEEEEECCCC--------C---CCCCCCEEEECCCC
Q ss_conf             99986458313---796788850455306899999-706878832786411213--------3---34698178301122
Q gi|254780313|r   56 LQINEKHQILQ---SNRRIVDLGSSPGSWSQVAAR-ITGSNANNTRVVAIDILD--------M---EPILGVKFFKFDFL  120 (227)
Q Consensus        56 ~eId~kf~l~k---~g~~VlDLGaaPGgWsQva~~-~~~~~~~~~~VigVDl~~--------~---~~i~gv~~~~gDi~  120 (227)
                      +++-+-+...+   |+..++|+|++|| +==+... ...++-   ++.=+|-..        .   =.++|+..+++.+.
T Consensus        35 l~~~~~~~~~~~~r~~~~~~DiGSG~G-fPGipL~Ci~~p~~---~~~Lles~~KK~~FL~~v~~~L~L~N~~i~~~R~E  110 (197)
T TIGR00138        35 LKLLELFDISKNQRTGKKVIDIGSGAG-FPGIPLACILRPEL---KLTLLESNKKKVNFLKEVKKELGLNNVEILNGRVE  110 (197)
T ss_pred             HHHHCCCCCCCCCCCCCEEEEECCCCC-HHHHHHHHHCCCCC---EEEEECCCCCHHHHHHHHHHHHCCCCCHHEEHHHH
T ss_conf             433000024566663312677347897-14565342205764---28984277406899999999838998242001125


Q ss_pred             HHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCH
Q ss_conf             079999999731388748975320211022210157889899988987641148774699993059998
Q gi|254780313|r  121 DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT  189 (227)
Q Consensus       121 ~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~  189 (227)
                      +.- .   . .....+|+|+|=+         .     .+ ....++++...+++||.|++  +.|...
T Consensus       111 ~~g-~---~-~~~~~~D~~~~RA---------l-----~~-l~~~~e~~~~L~~~~G~~~~--~KG~~~  157 (197)
T TIGR00138       111 DLG-S---K-QHEEQFDVITSRA---------L-----VS-LNELLELTLPLLKVGGYFLA--YKGKYL  157 (197)
T ss_pred             HCC-C---C-CCCCCCCEEEECC---------C-----HH-HHHHHHHHHHCCCCCCEEEE--ECCCCH
T ss_conf             505-5---4-5333578789803---------1-----02-46888866303788978999--708665


No 271
>KOG1197 consensus
Probab=55.71  E-value=17  Score=17.31  Aligned_cols=79  Identities=11%  Similarity=0.185  Sum_probs=41.9

Q ss_pred             HHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCC----CCCCCCCCEEEECCCCHHHHHHHHHHHCC
Q ss_conf             98645831379678885045530689999970687883278641121----33346981783011220799999997313
Q gi|254780313|r   58 INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL----DMEPILGVKFFKFDFLDLDSWEFIRQAIG  133 (227)
Q Consensus        58 Id~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~----~~~~i~gv~~~~gDi~~~~~~~~i~~~l~  133 (227)
                      |.+-|++ +||++||=-. |-||---.+++.+...+.  .+|+.---    .+..-.|++.. -|--.++..+++.++-+
T Consensus       138 l~e~y~v-kpGhtVlvha-AAGGVGlll~Ql~ra~~a--~tI~~asTaeK~~~akenG~~h~-I~y~~eD~v~~V~kiTn  212 (336)
T KOG1197         138 LFEAYNV-KPGHTVLVHA-AAGGVGLLLCQLLRAVGA--HTIATASTAEKHEIAKENGAEHP-IDYSTEDYVDEVKKITN  212 (336)
T ss_pred             HHHHCCC-CCCCEEEEEE-CCCCHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHCCCCCE-EECCCHHHHHHHHHCCC
T ss_conf             9986588-9997899983-156287999999975286--79997253788999986487430-00450569999984148


Q ss_pred             C-CCCEEEE
Q ss_conf             8-8748975
Q gi|254780313|r  134 G-NPDLVLS  141 (227)
Q Consensus       134 ~-~~DlVlS  141 (227)
                      + .+|+|.-
T Consensus       213 gKGVd~vyD  221 (336)
T KOG1197         213 GKGVDAVYD  221 (336)
T ss_pred             CCCCEEEEC
T ss_conf             877105632


No 272
>pfam10354 DUF2431 Domain of unknown function (DUF2431). This is the N-terminal domain of a family of proteins found from plants to humans. The function is not known.
Probab=55.42  E-value=17  Score=17.28  Aligned_cols=75  Identities=23%  Similarity=0.199  Sum_probs=47.7

Q ss_pred             CCEEEEC-CCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHH----HHHHHHHHHHHCCCCCCEEEEEEEC
Q ss_conf             8178301-1220799999997313887489753202110222101578898----9998898764114877469999305
Q gi|254780313|r  111 GVKFFKF-DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMS----LCEAATFFALEMLNIGGDFLVKTFQ  185 (227)
Q Consensus       111 gv~~~~g-Di~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~----L~~~al~~A~~~Lk~gG~fV~K~F~  185 (227)
                      |+..+.| |.+++.....+   -..++|.|+=-- |.+ |....|..+.+.    |...-+.-|..+|+++|-..+-+++
T Consensus        53 g~~V~~gVDAt~l~~~~~~---~~~~fD~IiFNF-PH~-G~~~~~~~~~i~~nr~Ll~~Ff~sa~~~l~~~G~i~vTl~~  127 (166)
T pfam10354        53 GVTVLHGVDATKLKKHFSL---KKNRFDRIIFNF-PHA-GGKIKDSDRNIRLNRELLRGFFKNASELLKPGGEIHVTLKD  127 (166)
T ss_pred             CCEEEEEEECCCCCCCCCC---CCCCCCEEEECC-CCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf             9959985744536668443---478357899879-988-88774125558999999999999999982799899999538


Q ss_pred             CCCHH
Q ss_conf             99989
Q gi|254780313|r  186 GGTTN  190 (227)
Q Consensus       186 G~~~~  190 (227)
                      |....
T Consensus       128 g~py~  132 (166)
T pfam10354       128 GEPYN  132 (166)
T ss_pred             CCCCC
T ss_conf             99987


No 273
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=54.73  E-value=17  Score=17.21  Aligned_cols=16  Identities=25%  Similarity=0.551  Sum_probs=11.1

Q ss_pred             CCCEEEEEECCCCHHH
Q ss_conf             7967888504553068
Q gi|254780313|r   67 SNRRIVDLGSSPGSWS   82 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWs   82 (227)
                      .+..|-=+|++|.|-+
T Consensus       536 ~gkKVAVIGsGPAGLa  551 (1012)
T TIGR03315       536 SAHKVAVIGAGPAGLS  551 (1012)
T ss_pred             CCCEEEEECCCHHHHH
T ss_conf             9988999897789999


No 274
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=54.50  E-value=18  Score=17.19  Aligned_cols=31  Identities=16%  Similarity=0.282  Sum_probs=17.9

Q ss_pred             CCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEE
Q ss_conf             379678885045530689999970687883278
Q gi|254780313|r   66 QSNRRIVDLGSSPGSWSQVAARITGSNANNTRV   98 (227)
Q Consensus        66 k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~V   98 (227)
                      +.|..|-=+|++|.|-+  |+......|...+|
T Consensus       548 ~tgKKVAVIGsGPAGLa--AA~~Lar~Gh~VTV  578 (1032)
T PRK09853        548 GSRHPVAVIGAGPAGLA--AGYFLARAGHPVTV  578 (1032)
T ss_pred             CCCCEEEEECCCHHHHH--HHHHHHHCCCCEEE
T ss_conf             88997999896889999--99999977993699


No 275
>KOG2078 consensus
Probab=54.37  E-value=5  Score=20.62  Aligned_cols=49  Identities=24%  Similarity=0.422  Sum_probs=37.4

Q ss_pred             CHHHHHHHHHHHHHHC-CCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC
Q ss_conf             4479999999998645-8313796788850455306899999706878832786411213
Q gi|254780313|r   47 WRARSAYKLLQINEKH-QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD  105 (227)
Q Consensus        47 yrsRaafKL~eId~kf-~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~  105 (227)
                      |+||    |.-.++++ .+|+||..|-|+.|+-|-+.-=|+.      .+++|++.|+.|
T Consensus       232 WnsR----L~~Eherlsg~fk~gevv~D~FaGvGPfa~Pa~k------K~crV~aNDLNp  281 (495)
T KOG2078         232 WNSR----LSHEHERLSGLFKPGEVVCDVFAGVGPFALPAAK------KGCRVYANDLNP  281 (495)
T ss_pred             EECC----CHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHH------CCCEEEECCCCH
T ss_conf             5041----0147888760158741334440476743350222------585899347997


No 276
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=54.29  E-value=8.9  Score=19.06  Aligned_cols=28  Identities=14%  Similarity=0.109  Sum_probs=11.1

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCEEEEEECC
Q ss_conf             479999999998645831379678885045
Q gi|254780313|r   48 RARSAYKLLQINEKHQILQSNRRIVDLGSS   77 (227)
Q Consensus        48 rsRaafKL~eId~kf~l~k~g~~VlDLGaa   77 (227)
                      .|.+.=++.+.-++.  -....+||=.|..
T Consensus       148 ~S~~m~~v~~~i~~~--A~s~~~VLI~GEs  175 (457)
T PRK11361        148 NSPAMMDICKDTAKI--ALSQASVLISGES  175 (457)
T ss_pred             CCHHHHHHHHHHHHH--HCCCCCEEEECCC
T ss_conf             699999999999998--4889958998899


No 277
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=54.27  E-value=18  Score=17.16  Aligned_cols=86  Identities=19%  Similarity=0.230  Sum_probs=52.7

Q ss_pred             HHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CCC-CCCCEEEECCCCHHHHH
Q ss_conf             99986458313796788850455306899999706878832786411213---------334-69817830112207999
Q gi|254780313|r   56 LQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------MEP-ILGVKFFKFDFLDLDSW  125 (227)
Q Consensus        56 ~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~~-i~gv~~~~gDi~~~~~~  125 (227)
                      +.|.+-|+|  .|.++|=-|++-|==...| +.....|-  .|+-+|...         ++. -..+.++++|+++++..
T Consensus         2 m~i~~lf~L--~gKvalVTG~s~GIG~aia-~~la~~Ga--~V~i~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v   76 (259)
T PRK08213          2 MTVLELFDL--TGKTALVTGGSRGLGLQIA-EALGEAGA--RVVLSARKAEELEEAAAHLEALGIDALWLAADVADEADI   76 (259)
T ss_pred             CCHHHHHCC--CCCEEEEECCCCHHHHHHH-HHHHHCCC--EEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHH
T ss_conf             776787399--9998999487768999999-99998699--999997988999999999995499589998268999999


Q ss_pred             HHHHHHCC---CCCCEEEECCCHH
Q ss_conf             99997313---8874897532021
Q gi|254780313|r  126 EFIRQAIG---GNPDLVLSDMAYP  146 (227)
Q Consensus       126 ~~i~~~l~---~~~DlVlSDmapn  146 (227)
                      +.+.+..-   ++.|+++.-.+..
T Consensus        77 ~~~v~~~~~~~G~iDiLVNNAG~~  100 (259)
T PRK08213         77 ERLAEETLERFGHIDILVNNAGAT  100 (259)
T ss_pred             HHHHHHHHHHHCCCCEEEECCCCC
T ss_conf             999999999839998999899778


No 278
>PRK09242 tropinone reductase; Provisional
Probab=53.67  E-value=18  Score=17.10  Aligned_cols=117  Identities=9%  Similarity=0.059  Sum_probs=61.4

Q ss_pred             HHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CC-CCC--CCEEEECCCCHHHHHHH
Q ss_conf             6458313796788850455306899999706878832786411213---------33-469--81783011220799999
Q gi|254780313|r   60 EKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------ME-PIL--GVKFFKFDFLDLDSWEF  127 (227)
Q Consensus        60 ~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~-~i~--gv~~~~gDi~~~~~~~~  127 (227)
                      .+|+|  .|.++|=-|++-|= =.-+++.....|.  .|+-+|...         +. ..+  .++++++|+++++..+.
T Consensus         4 ~~f~L--~gK~alITGgs~GI-G~a~a~~la~~Ga--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~~~~   78 (258)
T PRK09242          4 HRWRL--DGQTALITGASKGI-GLAIARELLGLGA--DVLIVARDADALAQARDELAEEFPERELHGLAADVSDDEDRRA   78 (258)
T ss_pred             CCCCC--CCCEEEEECCCCHH-HHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHH
T ss_conf             77637--99999994848689-9999999998799--8999969889999999999864479729999930799999999


Q ss_pred             HHHHCC---CCCCEEEECCCHHHCCCC-CC---HHHHHHHHHHHHH----HHHHHCCC--CCCEEEE
Q ss_conf             997313---887489753202110222-10---1578898999889----87641148--7746999
Q gi|254780313|r  128 IRQAIG---GNPDLVLSDMAYPTIGHR-KI---DHLRTMSLCEAAT----FFALEMLN--IGGDFLV  181 (227)
Q Consensus       128 i~~~l~---~~~DlVlSDmapn~SG~~-~~---D~~~~~~L~~~al----~~A~~~Lk--~gG~fV~  181 (227)
                      +.+...   ++.|+++.-.+.+..+.. +.   |-...++++....    ..+...++  .+|..|.
T Consensus        79 ~~~~~~~~~g~iDiLVnnAG~~~~~~~~~~s~~~w~~~~~vNl~~~~~l~~~~~p~m~~~~~G~IIn  145 (258)
T PRK09242         79 ILDWVEDHWDGLHILVNNAGGNITKAAIDYTEDEWRGIFETNLFSAFELSRYAYPLLKRHAASSIVN  145 (258)
T ss_pred             HHHHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf             9999999749997999899889999800199999999999981999999999999999759927999


No 279
>TIGR02418 acolac_catab acetolactate synthase, catabolic; InterPro: IPR012782    Acetolactate synthase is a thiamin pyrophosphate-dependent enzyme that combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. It exists in two distinct forms that have different properties, though they are clearly related , . The biosynthetic form, found in plants, fungi and bacteria, is involved in the biosynthesis of branched-chain amino acids and contains non-catalytic FAD. The catabolic form is found only in some bacteria, participates in butanediol fermentation, and does not contain FAD.   This entry represents the catabolic form of acetolactate synthase, generally found in species that posses acetolactate decarboxylase, which is often encoded in the same operon. The enzyme is thought to be a homotetramer, though this has not conclusively been shown. Each monomer consists of three distinct domains, designated, starting from the N-terminus, as alpha, beta and gamma . The core of the alpha and gamma domains is a six-stranded parallel beta sheet surrounded by alpha helices, while the the beta domain forms a double Rossman fold. The thiamin pyrophosphate cofactor has an unusual conformation that has not been seen in other enzymes using this cofactor, including the biosynthetic form of acetolactate synthase. The active site is located in a funnel at the dimer interface, bordered by residues from all three domains.; GO: 0000287 magnesium ion binding, 0003984 acetolactate synthase activity, 0030976 thiamin pyrophosphate binding, 0050660 FAD binding.
Probab=52.95  E-value=17  Score=17.27  Aligned_cols=136  Identities=15%  Similarity=0.161  Sum_probs=76.6

Q ss_pred             CCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCC---CEEEECCCCHHHHHHHHHHHCCC-----
Q ss_conf             8313796788850455306899999706878832786411213334698---17830112207999999973138-----
Q gi|254780313|r   63 QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILG---VKFFKFDFLDLDSWEFIRQAIGG-----  134 (227)
Q Consensus        63 ~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~i~g---v~~~~gDi~~~~~~~~i~~~l~~-----  134 (227)
                      .|||..+.|+=+|.-|=   +|=.+..+.+ .+.+||.||..+.+--.+   ..=+.|||  ..|.+.|.+.+.+     
T Consensus       265 ~LLk~aDLvItIGYdPI---EYep~~WN~~-~~~~Iv~iD~~~A~i~~~yqP~~eLvGdi--a~tl~~l~~~~~~~~~L~  338 (553)
T TIGR02418       265 KLLKQADLVITIGYDPI---EYEPRNWNSE-LDATIVHIDVEPAEIDNNYQPDLELVGDI--ASTLDLLAERVEGFYELP  338 (553)
T ss_pred             HHHHHCCEEEEECCCCE---ECCHHHCCCC-CCCEEEEEEEEEEEHHHCCCCCHHHHCCH--HHHHHHHHHHHCCCCCCC
T ss_conf             57756697898338850---3075544778-87206897314421200368614432572--777999958624661058


Q ss_pred             --------------------------------------------CCC-EEEECCCHHHCCCCCCHHHHHHH---H----H
Q ss_conf             --------------------------------------------874-89753202110222101578898---9----9
Q gi|254780313|r  135 --------------------------------------------NPD-LVLSDMAYPTIGHRKIDHLRTMS---L----C  162 (227)
Q Consensus       135 --------------------------------------------~~D-lVlSDmapn~SG~~~~D~~~~~~---L----~  162 (227)
                                                                  .-| .|++||.-.-  +|=-=+.+|++   |    -
T Consensus       339 ~~~~~~L~~l~~~~~~~~~~~~~~~~~~Gl~HPL~ii~~~Q~~v~dD~Tvt~D~GShy--IWmARyf~Sy~AR~lLiSNG  416 (553)
T TIGR02418       339 EDAQDILEDLKQQIEELDEVKADLKQAHGLLHPLEIIKAMQAIVTDDVTVTVDIGSHY--IWMARYFKSYRARHLLISNG  416 (553)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCHHHHHHHHHHCCCCCEEEEECCHHH--HHHHHHHCCCCCCEEEEECC
T ss_conf             8899999999999986531787521068630538899999974489816987043058--88887622567540243357


Q ss_pred             HHHHHHH------HHCCCCCCEEEEEEECCC---CHHHHHHHHHHHCCEEEEE
Q ss_conf             9889876------411487746999930599---9899999998625846997
Q gi|254780313|r  163 EAATFFA------LEMLNIGGDFLVKTFQGG---TTNDILCLLKKHFQKVIHV  206 (227)
Q Consensus       163 ~~al~~A------~~~Lk~gG~fV~K~F~G~---~~~~l~~~l~~~F~~V~~~  206 (227)
                      +..|.+|      ..+||||--.|-=-=+|.   ...||...++.+-.-||++
T Consensus       417 mQTlGVALPWAI~AaLlrP~~KVVSVSGDGGFLfSsmELETAVRLk~nIvHIi  469 (553)
T TIGR02418       417 MQTLGVALPWAIGAALLRPNTKVVSVSGDGGFLFSSMELETAVRLKLNIVHII  469 (553)
T ss_pred             CCHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCEEEEE
T ss_conf             50311121899999973889758998728312002578899998408948999


No 280
>pfam11324 DUF3126 Protein of unknown function (DUF3126). This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=52.47  E-value=19  Score=16.98  Aligned_cols=32  Identities=22%  Similarity=0.518  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHCCE-EEEECCCCCCCCCCEEEE
Q ss_conf             89999999862584-699768665755824989
Q gi|254780313|r  189 TNDILCLLKKHFQK-VIHVKPVASRAESVEMFL  220 (227)
Q Consensus       189 ~~~l~~~l~~~F~~-V~~~KP~aSR~~S~E~Yl  220 (227)
                      ...+...|++.|.. --.+||......|.|+|+
T Consensus         2 i~klq~yLr~~F~n~~i~v~~r~k~~DSaEV~~   34 (63)
T pfam11324         2 IKKLQAYLKRKFGNPTLRVKARPKKGDSAEVYI   34 (63)
T ss_pred             HHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEE
T ss_conf             589999999971999659976799998769985


No 281
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=52.47  E-value=19  Score=16.98  Aligned_cols=73  Identities=15%  Similarity=0.199  Sum_probs=48.6

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCC-CCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEECCC
Q ss_conf             796788850455306899999706878832786411213334-698178301122079999999731388748975320
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP-ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA  144 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~-i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDma  144 (227)
                      .|.+||=-|++-| -=.-+++.....|  .+|+++|..+.+. -.++.+++.|++++. .+.+.+.+ ++.|+++.-.+
T Consensus         4 ~gK~alVTGas~G-IG~aia~~~a~~G--a~V~~~d~~~~~~~~~~~~~~~~Dv~~~~-v~~~~~~~-g~iDiLvNnAG   77 (237)
T PRK06550          4 MTKTVLVTGAASG-IGLAQARAFLEQG--AHVYGVDKSDKPDLSGNFHFIQLDLSSDK-LEPLFKVV-PSVDILCNTAG   77 (237)
T ss_pred             CCCEEEEECCCCH-HHHHHHHHHHHCC--CEEEEEECCHHHHCCCCEEEEECCCCHHH-HHHHHHHC-CCCCEEEECCC
T ss_conf             9989999374779-9999999999879--99999708612430697389986388899-99999975-99979998988


No 282
>PRK08324 short chain dehydrogenase; Validated
Probab=51.88  E-value=19  Score=16.92  Aligned_cols=111  Identities=17%  Similarity=0.170  Sum_probs=60.7

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CCCCCCCEEEECCCCHHHHHHHHH----HHCC
Q ss_conf             796788850455306899999706878832786411213---------334698178301122079999999----7313
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------MEPILGVKFFKFDFLDLDSWEFIR----QAIG  133 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~~i~gv~~~~gDi~~~~~~~~i~----~~l~  133 (227)
                      .|.++|=-|+|-| -=.-+++.....|  ..|+.+|+.+         +..-..+..+++|+++++..+.+.    ..+ 
T Consensus       420 ~GKVALVTGga~G-IG~A~A~~fa~eG--A~Vvl~D~~~~~l~~~a~el~~~~~~~~~~~DVtd~~~v~~~v~~~~~~f-  495 (676)
T PRK08324        420 AGKVALVTGAAGG-IGLATAKRLAAEG--ACVVLADIDEEAAEAAAAELGGRDRALGVACDVTDEAAVQAAFEEAALAF-  495 (676)
T ss_pred             CCCEEEEECCCCC-HHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHH-
T ss_conf             9987999479881-6299999999879--98999958889999999997079947999806899999999999999985-


Q ss_pred             CCCCEEEECCCHHHCCC-CCC---HHHHHHHHHHHH----HHHHHHCCC---CCCEEEE
Q ss_conf             88748975320211022-210---157889899988----987641148---7746999
Q gi|254780313|r  134 GNPDLVLSDMAYPTIGH-RKI---DHLRTMSLCEAA----TFFALEMLN---IGGDFLV  181 (227)
Q Consensus       134 ~~~DlVlSDmapn~SG~-~~~---D~~~~~~L~~~a----l~~A~~~Lk---~gG~fV~  181 (227)
                      |.+|++++-.+-..+|. .++   +-.++++++...    ...|...++   .||..|.
T Consensus       496 GgIDiLVnNAGi~~~~~~~e~s~e~w~~~~~vNl~g~f~~~r~a~p~M~~qg~GG~IV~  554 (676)
T PRK08324        496 GGVDIVVSNAGIALSGPIGETSDELWRRSFEVNFTGHFLVAREAVRIMKAQGTGGNLVF  554 (676)
T ss_pred             CCCCEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf             99888997677789988265999999999988609999999999999997699919999


No 283
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=51.65  E-value=20  Score=16.90  Aligned_cols=126  Identities=21%  Similarity=0.196  Sum_probs=67.3

Q ss_pred             CEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC-----C-CC-CCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             6788850455306899999706878832786411213-----3-34-698178301122079999999731388748975
Q gi|254780313|r   69 RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-----M-EP-ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLS  141 (227)
Q Consensus        69 ~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~-----~-~~-i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlS  141 (227)
                      ++||=|||  |+--++++..+..++. +.|...|-.+     + ++ ...+.+++-|+.+.+...++   +.+ +|+|++
T Consensus         2 ~~ilviGa--G~Vg~~va~~la~~~d-~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~l---i~~-~d~VIn   74 (389)
T COG1748           2 MKILVIGA--GGVGSVVAHKLAQNGD-GEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVAL---IKD-FDLVIN   74 (389)
T ss_pred             CCEEEECC--CHHHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHH---HHC-CCEEEE
T ss_conf             72899898--6667999999985789-6299984888899998753346631699425675889998---725-778999


Q ss_pred             CCCHHH----------CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE-ECCCCHHHHHHHHHHH-CCEEE
Q ss_conf             320211----------022210157889899988987641148774699993-0599989999999862-58469
Q gi|254780313|r  142 DMAYPT----------IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT-FQGGTTNDILCLLKKH-FQKVI  204 (227)
Q Consensus       142 Dmapn~----------SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~-F~G~~~~~l~~~l~~~-F~~V~  204 (227)
                      =+-|..          +|...+|.....+-   ...+....-+.|=+.|.-+ |+=.-.+-+...+... |++++
T Consensus        75 ~~p~~~~~~i~ka~i~~gv~yvDts~~~~~---~~~~~~~a~~Agit~v~~~G~dPGi~nv~a~~a~~~~~~~i~  146 (389)
T COG1748          75 AAPPFVDLTILKACIKTGVDYVDTSYYEEP---PWKLDEEAKKAGITAVLGCGFDPGITNVLAAYAAKELFDEIE  146 (389)
T ss_pred             ECCCHHHHHHHHHHHHHCCCEEECCCCCCH---HHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf             287054299999999859988975467750---656548988749079716676864579999999998616564


No 284
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=51.60  E-value=6.8  Score=19.80  Aligned_cols=22  Identities=23%  Similarity=0.342  Sum_probs=8.7

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHH
Q ss_conf             79678885045530689999970
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARIT   89 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~   89 (227)
                      ....||=.|. +|.-=+.+++.+
T Consensus       161 s~~pVLI~GE-~GTGK~~~Ar~I  182 (441)
T PRK10365        161 SEATVLIHGD-SGTGKELVARAI  182 (441)
T ss_pred             CCCCEEEECC-CCHHHHHHHHHH
T ss_conf             8994899899-981099999999


No 285
>KOG3178 consensus
Probab=51.32  E-value=20  Score=16.87  Aligned_cols=53  Identities=15%  Similarity=0.142  Sum_probs=28.5

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC----CCCC-CCCEEEECCCCH
Q ss_conf             13796788850455306899999706878832786411213----3346-981783011220
Q gi|254780313|r   65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD----MEPI-LGVKFFKFDFLD  121 (227)
Q Consensus        65 ~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~----~~~i-~gv~~~~gDi~~  121 (227)
                      |+-....||+|++-|.-+--+...-+    ....+-.|+..    ...+ +||.++-||.+.
T Consensus       175 f~~v~~avDvGgGiG~v~k~ll~~fp----~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq  232 (342)
T KOG3178         175 FKGVNVAVDVGGGIGRVLKNLLSKYP----HIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQ  232 (342)
T ss_pred             CCCCCEEEECCCCHHHHHHHHHHHCC----CCCEEECCHHHHHHHHHHHCCCCCEECCCCCC
T ss_conf             55676688758747699999997588----77255147899985223206786512364534


No 286
>TIGR01096 3A0103s03R lysine-arginine-ornithine-binding periplasmic protein; InterPro: IPR005768   Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins (ABC transporters; see IPR003439 from INTERPRO) and a high affinity periplasmic solute-binding protein. The later are thought to bind the substrate in the vicinity of the inner membrane, and to transfer it to a complex of inner membrane proteins for concentration into the cytoplasm.     In Gram-positive bacteria which are surrounded by a single membrane and have therefore no periplasmic region the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homolog proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute through the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition at least some solute-binding proteins function in the initiation of sensory transduction pathways.    On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped into eight families of clusters, which generally correlate with the nature of the solute bound. Family 3 groups together specific amino acids and opine-binding periplasmic proteins and a periplasmic homolog with catalytic activity. ; GO: 0005215 transporter activity, 0006810 transport, 0030288 outer membrane-bounded periplasmic space.
Probab=51.10  E-value=20  Score=16.85  Aligned_cols=51  Identities=18%  Similarity=0.239  Sum_probs=31.9

Q ss_pred             CCEEEEEECCC-------CCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEE-CCC
Q ss_conf             83278641121-------3334698178301122079999999731388748975-320
Q gi|254780313|r   94 NNTRVVAIDIL-------DMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLS-DMA  144 (227)
Q Consensus        94 ~~~~VigVDl~-------~~~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlS-Dma  144 (227)
                      .+|.++|.|+-       .|.--+|-..+++-+.+.+....|-.+-.+++|+|+| =|.
T Consensus        45 a~G~~~GFDvDl~~alc~~~~gD~GWdh~~c~~~~~~~~~liPsL~~k~~Dai~an~~~  103 (333)
T TIGR01096        45 ADGKLVGFDVDLANALCKEMKGDPGWDHAKCKFVEQAFDGLIPSLKAKKVDAIMANAMS  103 (333)
T ss_pred             CCCCEEEHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHCCCEEEEEECCCC
T ss_conf             89545632678999999984589996431488842756652025453806899726655


No 287
>pfam11312 DUF3115 Protein of unknown function (DUF3115). This eukaryotic family of proteins has no known function.
Probab=50.94  E-value=20  Score=16.83  Aligned_cols=73  Identities=26%  Similarity=0.314  Sum_probs=40.5

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHH-------CCCCCCEEEEEECCCCC-------------CCC--------CCCEEEECC
Q ss_conf             79678885045530689999970-------68788327864112133-------------346--------981783011
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARIT-------GSNANNTRVVAIDILDM-------------EPI--------LGVKFFKFD  118 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~-------~~~~~~~~VigVDl~~~-------------~~i--------~gv~~~~gD  118 (227)
                      +..+||=+|-++|+-.--.+...       ........|-+||+-+.             .|+        -++.|.++|
T Consensus        79 ~~~~VlcIGGGAgaElvAla~~~~~~~~~~~~~~~~l~it~vDiAdWs~VV~~L~~~i~s~~~~~~~~~~~~~v~F~~~D  158 (288)
T pfam11312        79 STLNVLCIGGGAGAELVALAAVFRLSREHLSKSPSGLSVTLVDIADWSNVVDRLATAIRSPWVPQSIEADRFNVKFRQGD  158 (288)
T ss_pred             CCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCHHHHHHHHHHHCCCCCCCCCCCCHHCEEEEEECC
T ss_conf             77656997888238999999998742431578888861789974256999999986435889866688203025466544


Q ss_pred             CCHHHHHHHHHHHCCCCCCEEE
Q ss_conf             2207999999973138874897
Q gi|254780313|r  119 FLDLDSWEFIRQAIGGNPDLVL  140 (227)
Q Consensus       119 i~~~~~~~~i~~~l~~~~DlVl  140 (227)
                      +...+..+ +...+....++|+
T Consensus       159 vL~~~~~~-l~~l~~~~~~LiT  179 (288)
T pfam11312       159 VLSLSKDE-LIGLLGDKLDLVT  179 (288)
T ss_pred             CCCCCHHH-HHHCCCCCCCCHH
T ss_conf             01378466-6530478861303


No 288
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=48.89  E-value=22  Score=16.63  Aligned_cols=79  Identities=16%  Similarity=0.144  Sum_probs=48.1

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC-----------CCCCCCEEEECCCCHHHHHHHHHHHCC--
Q ss_conf             7967888504553068999997068788327864112133-----------346981783011220799999997313--
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM-----------EPILGVKFFKFDFLDLDSWEFIRQAIG--  133 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~-----------~~i~gv~~~~gDi~~~~~~~~i~~~l~--  133 (227)
                      +|.++|=.|++-|==...|.+.. ..|  ..|+.+|...-           ..-..+.+++.|+++++..+.+.+...  
T Consensus         6 kgK~~lITGas~GIG~aia~~la-~~G--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   82 (250)
T PRK12825          6 SGRVALVTGAARGIGRAIALRLA-AAG--ADVIVHPPSDEAAAEETVAAVEALGRRAQAVQADVTDAAALEAAVEELVER   82 (250)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHH-HCC--CEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHH
T ss_conf             97889993895589999999999-879--989999798878999999999853994899994189999999999999997


Q ss_pred             -CCCCEEEECCCHHHC
Q ss_conf             -887489753202110
Q gi|254780313|r  134 -GNPDLVLSDMAYPTI  148 (227)
Q Consensus       134 -~~~DlVlSDmapn~S  148 (227)
                       +++|+++.-.++...
T Consensus        83 ~g~iDilInnAg~~~~   98 (250)
T PRK12825         83 FGAIDILVNNAGITGD   98 (250)
T ss_pred             CCCCCEEEECCCCCCC
T ss_conf             6999899989988999


No 289
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=48.78  E-value=14  Score=17.81  Aligned_cols=37  Identities=30%  Similarity=0.558  Sum_probs=29.8

Q ss_pred             HHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEE-EECCCC
Q ss_conf             99998818447999999999864583137967888-504553
Q gi|254780313|r   39 VQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVD-LGSSPG   79 (227)
Q Consensus        39 ~~~Ak~~gyrsRaafKL~eId~kf~l~k~g~~VlD-LGaaPG   79 (227)
                      +-+++-+||  |-|-.|+++-+||++  |--+++| -||.||
T Consensus       128 FGm~~PeGy--RKAlRlm~~AekF~l--PiitfIDT~GAypG  165 (317)
T COG0825         128 FGMPRPEGY--RKALRLMKLAEKFGL--PIITFIDTPGAYPG  165 (317)
T ss_pred             CCCCCCHHH--HHHHHHHHHHHHHCC--CEEEEECCCCCCCC
T ss_conf             799992688--999999999998599--87999508987788


No 290
>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]
Probab=48.52  E-value=22  Score=16.60  Aligned_cols=50  Identities=24%  Similarity=0.234  Sum_probs=35.1

Q ss_pred             CCEEEEEECCCC----------CCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCH
Q ss_conf             832786411213----------3346981783011220799999997313887489753202
Q gi|254780313|r   94 NNTRVVAIDILD----------MEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAY  145 (227)
Q Consensus        94 ~~~~VigVDl~~----------~~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDmap  145 (227)
                      .+..|+-+|-+.          ++.-++..|++|||.+.+....+...  ..+|+|+.=+|-
T Consensus        25 ~d~~v~~~DkLTYAgn~~~l~~~~~~~~~~fv~~DI~D~~~v~~~~~~--~~~D~VvhfAAE   84 (340)
T COG1088          25 PDDHVVNLDKLTYAGNLENLADVEDSPRYRFVQGDICDRELVDRLFKE--YQPDAVVHFAAE   84 (340)
T ss_pred             CCCEEEEEECCCCCCCHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHH--CCCCEEEEECHH
T ss_conf             975289975233157787888640699715885455479999999974--488759981100


No 291
>TIGR00437 feoB ferrous iron transport protein B; InterPro: IPR003373 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent .; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=48.11  E-value=17  Score=17.35  Aligned_cols=78  Identities=22%  Similarity=0.245  Sum_probs=41.4

Q ss_pred             CCCCCEEEECCC-CHHH-HHHHHHHHCCCCCCEEEECCCHHHCCCCCCHH---HHHHHHHHHHHHH-------------H
Q ss_conf             469817830112-2079-99999973138874897532021102221015---7889899988987-------------6
Q gi|254780313|r  108 PILGVKFFKFDF-LDLD-SWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDH---LRTMSLCEAATFF-------------A  169 (227)
Q Consensus       108 ~i~gv~~~~gDi-~~~~-~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~---~~~~~L~~~al~~-------------A  169 (227)
                      .+||+.-++.-= .|+. +++.   .+++++|||++          .+|.   .|.+.|....+++             |
T Consensus        47 DLPG~YSL~~~S~~dE~v~~dy---l~~e~~DLv~n----------VVDA~nLERnL~LTLQL~E~G~p~i~~LN~~DeA  113 (733)
T TIGR00437        47 DLPGIYSLTTFSGLDEKVARDY---LLNEKPDLVVN----------VVDASNLERNLYLTLQLLELGIPMILALNLVDEA  113 (733)
T ss_pred             ECCCCCCCCCCCCCHHHHHHHH---HHCCCCCEEEE----------EECHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf             4487300589987427999899---75389967999----------7256677789999999997162585687267899


Q ss_pred             H--------HCC-CCCCEEEEEE--ECCCCHHHHHHHHHH
Q ss_conf             4--------114-8774699993--059998999999986
Q gi|254780313|r  170 L--------EML-NIGGDFLVKT--FQGGTTNDILCLLKK  198 (227)
Q Consensus       170 ~--------~~L-k~gG~fV~K~--F~G~~~~~l~~~l~~  198 (227)
                      .        +-| +-=|.=|+|+  -.|.+.+++...+..
T Consensus       114 ~k~GI~Id~~~Lee~LGvPVv~~~A~~g~G~~~L~~~i~~  153 (733)
T TIGR00437       114 EKKGIRIDEEKLEERLGVPVVPTSATEGRGIEELKDAIRE  153 (733)
T ss_pred             HHCCCEECHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHH
T ss_conf             7729631257775433865256532105778999999999


No 292
>PRK11127 autonomous glycyl radical cofactor GrcA; Provisional
Probab=47.67  E-value=18  Score=17.08  Aligned_cols=67  Identities=15%  Similarity=0.179  Sum_probs=47.9

Q ss_pred             EEECCCCHHHH---HHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             85045530689---9999706878832786411213334698178301122079999999731388748975
Q gi|254780313|r   73 DLGSSPGSWSQ---VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLS  141 (227)
Q Consensus        73 DLGaaPGgWsQ---va~~~~~~~~~~~~VigVDl~~~~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlS  141 (227)
                      -+=||.+|+.+   ++....|.  ...+-+.|+..|...++|-..++-++.+.++.....+......||++-
T Consensus        30 rci~a~~~y~~dqiv~~s~lg~--~e~re~~~~~~~~~~~~GG~HlqvNVldreTL~dAqk~PE~Yp~L~VR   99 (127)
T PRK11127         30 RCIVAKAGYAEDQVVAVSKLGE--IEYREVPVEVKPEVRVEGGQHLNVNVLRRETLEDAVKHPEKYPQLTIR   99 (127)
T ss_pred             EEEEEECCCCCCCEEEHHHHCC--CCCCEEEECCCCCCEECCCCEEEEEECCHHHHHHHHHCHHHCCCCEEE
T ss_conf             7899834634034676244178--534120021477411145547899761789999999697548781999


No 293
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=47.63  E-value=23  Score=16.51  Aligned_cols=83  Identities=16%  Similarity=0.145  Sum_probs=49.6

Q ss_pred             HHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC--CCC--------CCCCEEEECCCCHHHHHHH
Q ss_conf             986458313796788850455306899999706878832786411213--334--------6981783011220799999
Q gi|254780313|r   58 INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD--MEP--------ILGVKFFKFDFLDLDSWEF  127 (227)
Q Consensus        58 Id~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~--~~~--------i~gv~~~~gDi~~~~~~~~  127 (227)
                      +.++|+|  .|.++|=.|++-|== .-+++.....|-  .|+-.|..+  .+.        -..+.++.+|+++++..+.
T Consensus         6 ~~~~~~L--~gK~alITGgs~GIG-~~ia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~   80 (259)
T PRK06124          6 YLQRFSL--AGQVALVTGSARGLG-LEIARALAEAGA--HVLVNGRNAARVEAAVAALRAAGGAAEALVFDISDEEAVAA   80 (259)
T ss_pred             CHHHCCC--CCCEEEEECCCCHHH-HHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHH
T ss_conf             2364099--999899928674899-999999998799--99999698899999999999659958999951799999999


Q ss_pred             HHHHCC---CCCCEEEECCCH
Q ss_conf             997313---887489753202
Q gi|254780313|r  128 IRQAIG---GNPDLVLSDMAY  145 (227)
Q Consensus       128 i~~~l~---~~~DlVlSDmap  145 (227)
                      +.+...   ++.|+++.-.+-
T Consensus        81 ~~~~~~~~~g~iDiLVnnAG~  101 (259)
T PRK06124         81 AFARIDAEHGRLDILVNNVGA  101 (259)
T ss_pred             HHHHHHHHCCCCCEEEECCCC
T ss_conf             999999975999799989888


No 294
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=47.21  E-value=23  Score=16.47  Aligned_cols=95  Identities=17%  Similarity=0.173  Sum_probs=48.7

Q ss_pred             CCCCEEEEEECCCCHHHHH-HHHHHCCCCCCEEEEEECCCCCC----CCCCCEEEECCCCHHHHHHHHHHHC-CCCCCEE
Q ss_conf             3796788850455306899-99970687883278641121333----4698178301122079999999731-3887489
Q gi|254780313|r   66 QSNRRIVDLGSSPGSWSQV-AARITGSNANNTRVVAIDILDME----PILGVKFFKFDFLDLDSWEFIRQAI-GGNPDLV  139 (227)
Q Consensus        66 k~g~~VlDLGaaPGgWsQv-a~~~~~~~~~~~~VigVDl~~~~----~i~gv~~~~gDi~~~~~~~~i~~~l-~~~~DlV  139 (227)
                      ++|++||=+|++|-|=.-+ +++..|.    ..|+++|..+-.    .--|+...- |-.+.+ .+.+.... +..+|.|
T Consensus       159 ~~g~~vlV~GaG~vGl~aiq~ak~~Ga----~~V~~~d~~~~kl~~a~~lGAd~~i-~~~~~~-~~~~~~~~~~~~~d~v  232 (347)
T PRK10309        159 CEGKNVIIIGAGTIGLLAIQCAVALGA----KSVTAIDINSEKLALAKSLGAMQTF-NSREMS-APQIQSVLRELRFDQL  232 (347)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHCCC----CEEEEEECCHHHHHHHHHCCCCEEE-CCCCCC-HHHHHHHHCCCCCCEE
T ss_conf             889869998998389999999998599----7699992899999999972998998-688779-9999998629988869


Q ss_pred             EECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf             7532021102221015788989998898764114877469999
Q gi|254780313|r  140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK  182 (227)
Q Consensus       140 lSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K  182 (227)
                      +-|    ++|..            ..++.+...++++|.+++-
T Consensus       233 vid----~~G~~------------~~~~~a~~~~~~~G~iv~~  259 (347)
T PRK10309        233 ILE----TAGVP------------QTVELAIEIAGPRAQLALV  259 (347)
T ss_pred             EEE----CCCCH------------HHHHHHHHHHCCCEEEEEE
T ss_conf             997----99998------------9999999961897499998


No 295
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=47.01  E-value=23  Score=16.45  Aligned_cols=75  Identities=16%  Similarity=0.189  Sum_probs=49.3

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCC-CCCCCEEEECCCCHHHHHHHHH----HHCCCCCCEEEE
Q ss_conf             79678885045530689999970687883278641121333-4698178301122079999999----731388748975
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME-PILGVKFFKFDFLDLDSWEFIR----QAIGGNPDLVLS  141 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~-~i~gv~~~~gDi~~~~~~~~i~----~~l~~~~DlVlS  141 (227)
                      .|.++|=-|++-|==...| +.....  +..|+.+|+.+-+ .-.++.+++.|+++++..+.+.    +.+ ++.|+++.
T Consensus         8 ~gKvalVTGgs~GIG~aia-~~la~~--Ga~V~~~d~~~~~~~~~~~~~~~~Dvt~~~~v~~~v~~~~~~~-G~iDiLVN   83 (266)
T PRK06171          8 QGKIIIVTGGSSGIGLAIV-EELLAQ--GANVQMVDIHGGDEKHKGYQFWPTDISSAKEVNHTVAEIIERF-GRIDGLVN   83 (266)
T ss_pred             CCCEEEEECCCCHHHHHHH-HHHHHC--CCEEEEEECCHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHH-CCCCEEEE
T ss_conf             9997999477878999999-999987--9999999788535058976999816999999999999999983-99889998


Q ss_pred             CCCH
Q ss_conf             3202
Q gi|254780313|r  142 DMAY  145 (227)
Q Consensus       142 Dmap  145 (227)
                      -.+-
T Consensus        84 NAGi   87 (266)
T PRK06171         84 NAGI   87 (266)
T ss_pred             CCCC
T ss_conf             8866


No 296
>PRK11430 hypothetical protein; Provisional
Probab=45.33  E-value=25  Score=16.29  Aligned_cols=21  Identities=5%  Similarity=0.001  Sum_probs=8.9

Q ss_pred             CEEEECCCCHHHHHHHHHHHC
Q ss_conf             178301122079999999731
Q gi|254780313|r  112 VKFFKFDFLDLDSWEFIRQAI  132 (227)
Q Consensus       112 v~~~~gDi~~~~~~~~i~~~l  132 (227)
                      ...+.-|+.+++-++.+.+.+
T Consensus        71 Krsi~ldlk~~~g~~~~~~Lv   91 (381)
T PRK11430         71 KESVVLDLKNDHDKSIFINML   91 (381)
T ss_pred             CEEEEEECCCHHHHHHHHHHH
T ss_conf             969987792878889999998


No 297
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=45.01  E-value=25  Score=16.26  Aligned_cols=74  Identities=22%  Similarity=0.169  Sum_probs=45.3

Q ss_pred             CCCCCEEEEEECCCCHHHH-HHHHHHCCCCCCEEEEEECCCC-----CCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCE
Q ss_conf             1379678885045530689-9999706878832786411213-----334698178301122079999999731388748
Q gi|254780313|r   65 LQSNRRIVDLGSSPGSWSQ-VAARITGSNANNTRVVAIDILD-----MEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDL  138 (227)
Q Consensus        65 ~k~g~~VlDLGaaPGgWsQ-va~~~~~~~~~~~~VigVDl~~-----~~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~Dl  138 (227)
                      ++.-..||=||  --||.- ...+++-.. .++.|.|.|+..     .-.-|+.+|..|||+-.  .+.|..+. .++|+
T Consensus       312 ~~~~~~vlilg--vngfig~hl~~~~l~~-~~~~v~g~d~~~~~i~~~~~~p~~~f~~gdi~~~--~~wie~~i-kkcdv  385 (660)
T PRK08125        312 AKRRTRVLILG--VNGFIGNHLTERLLRD-DNYEVYGLDIGSDAISRFLGHPRFHFVEGDISIH--SEWIEYHI-KKCDV  385 (660)
T ss_pred             CCCCEEEEEEE--CCCHHHHHHHHHHHCC-CCEEEEEEECCCCHHHHHHCCCCEEEEECCCHHH--HHHHHHHH-HHCCE
T ss_conf             56522799983--4413678999998503-8858998865753455753499548881561466--89999887-54576


Q ss_pred             EEECCC
Q ss_conf             975320
Q gi|254780313|r  139 VLSDMA  144 (227)
Q Consensus       139 VlSDma  144 (227)
                      |+-=.|
T Consensus       386 vlplva  391 (660)
T PRK08125        386 VLPLVA  391 (660)
T ss_pred             EEEEHH
T ss_conf             732055


No 298
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=44.35  E-value=25  Score=16.19  Aligned_cols=116  Identities=17%  Similarity=0.185  Sum_probs=60.7

Q ss_pred             CCCEEEEEECCCCH-HHHHHHHHHCCCCCCEEEEEECCCC---------CCCCCCCEEEECCCCHHHHHHHHHHHCC---
Q ss_conf             79678885045530-6899999706878832786411213---------3346981783011220799999997313---
Q gi|254780313|r   67 SNRRIVDLGSSPGS-WSQVAARITGSNANNTRVVAIDILD---------MEPILGVKFFKFDFLDLDSWEFIRQAIG---  133 (227)
Q Consensus        67 ~g~~VlDLGaaPGg-WsQva~~~~~~~~~~~~VigVDl~~---------~~~i~gv~~~~gDi~~~~~~~~i~~~l~---  133 (227)
                      .|.++|=.|+|-|. ==.-+++.....|-  +|+-.|+.+         .+......+++.|+++++..+.+.+...   
T Consensus         5 ~GK~alVTGaa~g~GIG~aiA~~la~~Ga--~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~   82 (254)
T PRK07533          5 AGKRGLVVGIANEQSIAWGCARAFRALGA--ELAVTYLNDKARPYVEPLAEELDAPLLMPLDVREPGQLEAVFARIAEEW   82 (254)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHH
T ss_conf             99989996888980899999999998799--9999828877899999999745981899916999999999999999984


Q ss_pred             CCCCEEEECCC--HH--HCC-CCCCH---HHHHHHHHHH----HHHHHHHCCCCCCEEEEEEE
Q ss_conf             88748975320--21--102-22101---5788989998----89876411487746999930
Q gi|254780313|r  134 GNPDLVLSDMA--YP--TIG-HRKID---HLRTMSLCEA----ATFFALEMLNIGGDFLVKTF  184 (227)
Q Consensus       134 ~~~DlVlSDma--pn--~SG-~~~~D---~~~~~~L~~~----al~~A~~~Lk~gG~fV~K~F  184 (227)
                      ++.|+++.-.+  |.  ..+ ..+.+   -.+.++++..    ....+...++.||..+.=.+
T Consensus        83 G~iDilVnna~~~~~~~~~~~~~d~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~gG~iv~iss  145 (254)
T PRK07533         83 GRLDFVLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMSY  145 (254)
T ss_pred             CCCCEEEECCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf             997789742212660111476014999999999999859999999998888651783156732


No 299
>pfam03492 Methyltransf_7 SAM dependent carboxyl methyltransferase. This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine.
Probab=44.24  E-value=26  Score=16.18  Aligned_cols=29  Identities=31%  Similarity=0.468  Sum_probs=20.3

Q ss_pred             HHHHC--CCCCCCCEEEEEECCCCHHHHHHH
Q ss_conf             98645--831379678885045530689999
Q gi|254780313|r   58 INEKH--QILQSNRRIVDLGSSPGSWSQVAA   86 (227)
Q Consensus        58 Id~kf--~l~k~g~~VlDLGaaPGgWsQva~   86 (227)
                      |.+.|  +++.+..+|.||||+-|.=|-.+.
T Consensus         5 i~~l~~~~~~p~~~~IADlGCSsGpNtl~~v   35 (331)
T pfam03492         5 ISELLLRNLFPNSIKIADLGCSSGPNTFLAV   35 (331)
T ss_pred             HHHHHHCCCCCCCEEEEEECCCCCHHHHHHH
T ss_conf             9999855789985599981799975289999


No 300
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=43.88  E-value=26  Score=16.15  Aligned_cols=81  Identities=23%  Similarity=0.203  Sum_probs=48.1

Q ss_pred             HHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC--C----CCC----CCCEEEECCCCHHHHHHHH
Q ss_conf             86458313796788850455306899999706878832786411213--3----346----9817830112207999999
Q gi|254780313|r   59 NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD--M----EPI----LGVKFFKFDFLDLDSWEFI  128 (227)
Q Consensus        59 d~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~--~----~~i----~gv~~~~gDi~~~~~~~~i  128 (227)
                      ++-|+|  .|.++|=-|++-|==.. +++.....|-  +|+-+|...  .    +.+    ..+.++++|+++++..+.+
T Consensus         3 ~~lf~L--~gKvalVTGas~GIG~a-ia~~la~~Ga--~V~i~~~~~~~~~~~~~~l~~~g~~~~~~~~Dvtd~~~v~~~   77 (278)
T PRK08277          3 NNLFSL--KGKVAVITGGGGVLGGA-MAKELARAGA--KVAILDRNQEKAEAVVEEIKANGGEAIALKADVLDKESLEQA   77 (278)
T ss_pred             CCCCCC--CCCEEEEECCCCHHHHH-HHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHH
T ss_conf             006388--99989995867489999-9999998799--899997988999999999984599099998248999999999


Q ss_pred             HHHCC---CCCCEEEECCC
Q ss_conf             97313---88748975320
Q gi|254780313|r  129 RQAIG---GNPDLVLSDMA  144 (227)
Q Consensus       129 ~~~l~---~~~DlVlSDma  144 (227)
                      .+...   ++.|+++.-.+
T Consensus        78 ~~~~~~~~G~iDiLVNnAG   96 (278)
T PRK08277         78 RQQILKDFGRCDILINGAG   96 (278)
T ss_pred             HHHHHHHHCCCCEEEECCC
T ss_conf             9999998499888998898


No 301
>PRK07825 short chain dehydrogenase; Provisional
Probab=43.54  E-value=26  Score=16.12  Aligned_cols=80  Identities=19%  Similarity=0.186  Sum_probs=48.7

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC------CCCCCCCEEEECCCCHHHHHHHHHHHCC---CCCC
Q ss_conf             796788850455306899999706878832786411213------3346981783011220799999997313---8874
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD------MEPILGVKFFKFDFLDLDSWEFIRQAIG---GNPD  137 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~------~~~i~gv~~~~gDi~~~~~~~~i~~~l~---~~~D  137 (227)
                      .|.+||=-|++-| -=.-+++.....|.  +|+..|+..      .+.+..+..++.|+++++..+.+.+...   |.+|
T Consensus         4 ~gKvvlITGassG-IG~a~A~~la~~Ga--~V~i~~r~~~~l~~~~~~~~~~~~~~~DVtd~~~v~~~~~~~~~~~G~iD   80 (273)
T PRK07825          4 RGKVIAITGGARG-IGLATARALAALGA--KVAIGDLDEALAKESAAELGLVVGGPLDVTDPASFAAFLDAVEADLGPID   80 (273)
T ss_pred             CCCEEEEECCCCH-HHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf             9988999262339-99999999998799--89999799999999998607855999147999999999999999709977


Q ss_pred             EEEECCCHHHCC
Q ss_conf             897532021102
Q gi|254780313|r  138 LVLSDMAYPTIG  149 (227)
Q Consensus       138 lVlSDmapn~SG  149 (227)
                      +++.-.+....|
T Consensus        81 iLVNNAGi~~~~   92 (273)
T PRK07825         81 VLVNNAGIMPVG   92 (273)
T ss_pred             EEEECCCCCCCC
T ss_conf             899878778998


No 302
>PRK08671 methionine aminopeptidase; Provisional
Probab=42.89  E-value=27  Score=16.05  Aligned_cols=30  Identities=7%  Similarity=0.176  Sum_probs=19.7

Q ss_pred             HHHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf             99881844799999999986458313796788850
Q gi|254780313|r   41 RAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLG   75 (227)
Q Consensus        41 ~Ak~~gyrsRaafKL~eId~kf~l~k~g~~VlDLG   75 (227)
                      +-++.|-.++.+.+.+.     .+++||.+++|||
T Consensus         4 kyr~Ag~I~~~vl~~~~-----~~~kpG~t~~el~   33 (293)
T PRK08671          4 KYREAGKIASKVREEAA-----KLIKPGASLLEVA   33 (293)
T ss_pred             HHHHHHHHHHHHHHHHH-----HHCCCCCCHHHHH
T ss_conf             99999999999999999-----7676999099999


No 303
>cd01088 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=42.81  E-value=27  Score=16.05  Aligned_cols=113  Identities=13%  Similarity=0.092  Sum_probs=46.9

Q ss_pred             HHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCC---CEEEEEECCC--CCCCCC--CCEEEE
Q ss_conf             818447999999999864583137967888504553068999997068788---3278641121--333469--817830
Q gi|254780313|r   44 LEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN---NTRVVAIDIL--DMEPIL--GVKFFK  116 (227)
Q Consensus        44 ~~gyrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~---~~~VigVDl~--~~~~i~--gv~~~~  116 (227)
                      +.|=.++.+.+...     .+++||.+++|||.       .+-+.+...+.   -+.-++|.=.  .--|.+  ...+-.
T Consensus         6 ~Ag~i~~~vl~~~~-----~~~kpG~s~~el~~-------~~e~~i~~~~a~~aFP~~iSvN~~v~H~~P~~~d~~~lk~   73 (291)
T cd01088           6 EAGEIHRQVRKYAQ-----SLIKPGMTLLEIAE-------FVENRIRELGAGPAFPVNLSINECAAHYTPNAGDDTVLKE   73 (291)
T ss_pred             HHHHHHHHHHHHHH-----HHCCCCCCHHHHHH-------HHHHHHHHCCCCCCCCCEECCCCEEECCCCCCCCCEEECC
T ss_conf             99999999999999-----66769995999999-------9999999859806778622454677568899887546337


Q ss_pred             CCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCE
Q ss_conf             11220799999997313887489753202110222101578898999889876411487746
Q gi|254780313|r  117 FDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD  178 (227)
Q Consensus       117 gDi~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~  178 (227)
                      ||+.+.+        ++-..|=.++|.|.-+. . .-.....++-+..||..|.+.++||..
T Consensus        74 GDiVkiD--------~G~~idG~~~D~A~Tv~-v-~~~~~~Li~aa~~al~~ai~~~kpG~~  125 (291)
T cd01088          74 GDVVKLD--------FGAHVDGYIADSAFTVD-F-DPKYDDLLEAAKEALNAAIKEAGPDVR  125 (291)
T ss_pred             CCEEEEE--------EEEEECCEEEEEEEEEE-C-CCCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             9989986--------65787788868889996-3-831778999999999999998538989


No 304
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=42.75  E-value=12  Score=18.23  Aligned_cols=38  Identities=18%  Similarity=0.337  Sum_probs=31.0

Q ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEE-EECCCC
Q ss_conf             999998818447999999999864583137967888-504553
Q gi|254780313|r   38 YVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVD-LGSSPG   79 (227)
Q Consensus        38 y~~~Ak~~gyrsRaafKL~eId~kf~l~k~g~~VlD-LGaaPG   79 (227)
                      .+=+++-+||  |-|-.|+.+-+||++  |--+.+| -||.||
T Consensus       131 NFGm~~PeGY--RKAlRlm~lAekf~~--Pvit~IDTpGAypG  169 (322)
T CHL00198        131 NFGMPSPGGY--RKALRLMEHANRFGL--PILTFIDTPGAWAG  169 (322)
T ss_pred             CCCCCCHHHH--HHHHHHHHHHHHCCC--CEEEEECCCCCCCC
T ss_conf             1899985999--999999999997099--77998328986788


No 305
>PRK06128 oxidoreductase; Provisional
Probab=42.44  E-value=27  Score=16.01  Aligned_cols=111  Identities=14%  Similarity=0.066  Sum_probs=58.2

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC----C-------CC-CCCCEEEECCCCHHHHHHHHH----H
Q ss_conf             796788850455306899999706878832786411213----3-------34-698178301122079999999----7
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD----M-------EP-ILGVKFFKFDFLDLDSWEFIR----Q  130 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~----~-------~~-i~gv~~~~gDi~~~~~~~~i~----~  130 (227)
                      .|.++|=-|++-|== .-++......|-  .|+-.|+..    .       +. -..+..+.+|+.+++..+.+.    +
T Consensus        54 ~GKvAlVTGgssGIG-~AiA~~lA~eGA--~Vvi~~~~~~~~~a~~~~~~i~~~G~~a~~v~~Dvsd~~~~~~~v~~~~~  130 (300)
T PRK06128         54 QGRKALITGADSGIG-RATAIAFAREGA--DIVLNYLPEEEQDAAEVVQLIQAEGRKAVAVPGDLKDEAFCRQLVERAVK  130 (300)
T ss_pred             CCCEEEEECCCCHHH-HHHHHHHHHCCC--EEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf             999589917366999-999999998699--99994299556789999999996598189997478999999999999999


Q ss_pred             HCCCCCCEEEECCCHHHC--CCCCCHH---HHHHHHHHHH----HHHHHHCCCCCCEEEE
Q ss_conf             313887489753202110--2221015---7889899988----9876411487746999
Q gi|254780313|r  131 AIGGNPDLVLSDMAYPTI--GHRKIDH---LRTMSLCEAA----TFFALEMLNIGGDFLV  181 (227)
Q Consensus       131 ~l~~~~DlVlSDmapn~S--G~~~~D~---~~~~~L~~~a----l~~A~~~Lk~gG~fV~  181 (227)
                      .+ ++.|+++.-.+....  ...+++.   .+.++++...    ...++..|++||..|.
T Consensus       131 ~~-G~iDiLVNNAG~~~~~~~~~~~~~e~w~~~~~vNl~g~f~~~~aa~p~m~~gGsIIn  189 (300)
T PRK06128        131 EL-GGLDILVNIAGKQTARKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIIN  189 (300)
T ss_pred             HH-CCCCEEEECCCCCCCCCCHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf             80-999989989999778999177999999999866115899999999998753871478


No 306
>PRK06914 short chain dehydrogenase; Provisional
Probab=42.43  E-value=27  Score=16.01  Aligned_cols=110  Identities=15%  Similarity=0.130  Sum_probs=58.4

Q ss_pred             CCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC------------CCCCCCCEEEECCCCHHHHHHHHHHHCC--
Q ss_conf             96788850455306899999706878832786411213------------3346981783011220799999997313--
Q gi|254780313|r   68 NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD------------MEPILGVKFFKFDFLDLDSWEFIRQAIG--  133 (227)
Q Consensus        68 g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~------------~~~i~gv~~~~gDi~~~~~~~~i~~~l~--  133 (227)
                      +.++|=-||+-|==-..| ......|  .+|++.+..+            ..+-.++..++.|+++.+..+.+.+.+.  
T Consensus         3 ~K~alITGassGIG~a~A-~~la~~G--~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~~~   79 (280)
T PRK06914          3 KKIAIITGASSGFGLLTT-LELAKKD--YLVIATMRNLEKQENLISQAAQLNLSQNIKVQQLDVTDQNSIHNFQLFLKEY   79 (280)
T ss_pred             CCEEEEECCCCHHHHHHH-HHHHHCC--CEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf             198999073449999999-9999879--9899998988999999999996499976699968899999999999999982


Q ss_pred             CCCCEEEECCCHHHCCCC-C---CHHHHHHHHHHHHHH----HHHHCCC--CCCEEE
Q ss_conf             887489753202110222-1---015788989998898----7641148--774699
Q gi|254780313|r  134 GNPDLVLSDMAYPTIGHR-K---IDHLRTMSLCEAATF----FALEMLN--IGGDFL  180 (227)
Q Consensus       134 ~~~DlVlSDmapn~SG~~-~---~D~~~~~~L~~~al~----~A~~~Lk--~gG~fV  180 (227)
                      +++|+++.-.+....|.- +   -|..+.++.+.....    .++..++  .+|..|
T Consensus        80 g~iDvLVNNAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~lp~m~~~~~G~Iv  136 (280)
T PRK06914         80 GRIDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQKSGKII  136 (280)
T ss_pred             CCCCEEEECCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf             998789978866778742117799999999871289998999997877756995899


No 307
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=42.13  E-value=28  Score=15.98  Aligned_cols=148  Identities=18%  Similarity=0.164  Sum_probs=79.5

Q ss_pred             CCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC----CCCC-----CCEEEECCCCHHHHHHHHHHHCCC--
Q ss_conf             37967888504553068999997068788327864112133----3469-----817830112207999999973138--
Q gi|254780313|r   66 QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM----EPIL-----GVKFFKFDFLDLDSWEFIRQAIGG--  134 (227)
Q Consensus        66 k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~----~~i~-----gv~~~~gDi~~~~~~~~i~~~l~~--  134 (227)
                      .++.++|=-||+-|==-++| +....+|.+-.++|=+-...    +.+.     .|.++..|+.+++....+...+..  
T Consensus         4 ~~~~~~lITGASsGIG~~~A-~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~~   82 (265)
T COG0300           4 MKGKTALITGASSGIGAELA-KQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKERG   82 (265)
T ss_pred             CCCCEEEEECCCCHHHHHHH-HHHHHCCCEEEEEECCHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHCC
T ss_conf             77867999778864899999-99997799799996769999999999987308627999776788367999999998248


Q ss_pred             -CCCEEEECCCHHHCCC----CCCHHHHHHHHHHHHHHHH-----HHCCCCCCEEEEEE-----EC--------------
Q ss_conf             -8748975320211022----2101578898999889876-----41148774699993-----05--------------
Q gi|254780313|r  135 -NPDLVLSDMAYPTIGH----RKIDHLRTMSLCEAATFFA-----LEMLNIGGDFLVKT-----FQ--------------  185 (227)
Q Consensus       135 -~~DlVlSDmapn~SG~----~~~D~~~~~~L~~~al~~A-----~~~Lk~gG~fV~K~-----F~--------------  185 (227)
                       .+|+.+--.+.-..|.    ...+...+++|+..++...     ..+.+.|+--|+=+     |.              
T Consensus        83 ~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~~G~IiNI~S~ag~~p~p~~avY~ATKa~  162 (265)
T COG0300          83 GPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERGAGHIINIGSAAGLIPTPYMAVYSATKAF  162 (265)
T ss_pred             CCCCEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHCCCCCCHHHHHHHHHH
T ss_conf             85238997787477665421885899999999999999999999999986589669998434532888632799999999


Q ss_pred             -CCCHHHHHHHHHHHCCEEEEECCCCCCCC
Q ss_conf             -99989999999862584699768665755
Q gi|254780313|r  186 -GGTTNDILCLLKKHFQKVIHVKPVASRAE  214 (227)
Q Consensus       186 -G~~~~~l~~~l~~~F~~V~~~KP~aSR~~  214 (227)
                       -.-++.|...++..=-.|..+=|-..|.+
T Consensus       163 v~~fSeaL~~EL~~~gV~V~~v~PG~~~T~  192 (265)
T COG0300         163 VLSFSEALREELKGTGVKVTAVCPGPTRTE  192 (265)
T ss_pred             HHHHHHHHHHHHCCCCEEEEEEECCCCCCC
T ss_conf             999999999983589849999965733355


No 308
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=41.57  E-value=28  Score=15.92  Aligned_cols=179  Identities=18%  Similarity=0.220  Sum_probs=99.3

Q ss_pred             HHHHHCCCHHHHH--HHHHCCHHHHHHHHHHHHHHC--CCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCC
Q ss_conf             9996408999999--988184479999999998645--831379678885045530689999970687883278641121
Q gi|254780313|r   29 WLNRHINDPYVQR--AQLEGWRARSAYKLLQINEKH--QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL  104 (227)
Q Consensus        29 W~~r~~~D~y~~~--Ak~~gyrsRaafKL~eId~kf--~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~  104 (227)
                      |+-..+-...+-+  .-.|=|..|+-..+++-...-  ..+.++..+|||||+-+--+....+....   ..+-++||+.
T Consensus        21 ~~YD~~Gs~LFe~It~lpEYY~tr~E~~IL~~~~~~Ia~~~~~~~~lIElGsG~~~Kt~~LL~al~~---~~~Y~plDIS   97 (301)
T TIGR03438        21 YFYDARGSELFEQICELPEYYPTRTEAAILERHADEIAAATGAGCELVELGSGSSRKTRLLLDALRQ---PARYVPIDIS   97 (301)
T ss_pred             HCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHC---CCEEEEEECC
T ss_conf             5015627799999977986687168999999889999986276764773178862378999998621---5638877568


Q ss_pred             C---------C-CCCCC--CEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf             3---------3-34698--1783011220799999997313887489753202110222101578898999889876411
Q gi|254780313|r  105 D---------M-EPILG--VKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEM  172 (227)
Q Consensus       105 ~---------~-~~i~g--v~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~  172 (227)
                      .         + ...|+  |.-+.||+++.-.  .. .......-+++.=+  ++-||-+.+++..+      |.-....
T Consensus        98 ~~~L~~s~~~l~~~~p~l~v~~v~~dy~~~l~--~~-~~~~~~~rl~~flG--SsIGNf~~~ea~~f------L~~~~~~  166 (301)
T TIGR03438        98 ADALKESAAALAADYPQLEVHGICADFTQPLA--LP-PEPAAGRRLGFFPG--STIGNFTPEEAVAF------LRRIRQL  166 (301)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEEEECHHCHHH--CC-CCCCCCCCEEEECC--CCCCCCCHHHHHHH------HHHHHHH
T ss_conf             99999999999977899768999633315744--56-65578875899707--54478998999999------9999997


Q ss_pred             CCCCCEEEEEE------------EC---C--CCHH-HHHHHHH---------HHCCEEEEECCCCCCCCCCEEEEEECC
Q ss_conf             48774699993------------05---9--9989-9999998---------625846997686657558249898307
Q gi|254780313|r  173 LNIGGDFLVKT------------FQ---G--GTTN-DILCLLK---------KHFQKVIHVKPVASRAESVEMFLLAKG  224 (227)
Q Consensus       173 Lk~gG~fV~K~------------F~---G--~~~~-~l~~~l~---------~~F~~V~~~KP~aSR~~S~E~Ylv~~g  224 (227)
                      |.+|+.|++=+            ++   |  ..|+ .++..+.         ..|+.+-.+-|..+|-+   +|++.+.
T Consensus       167 l~~~d~lLiG~Dl~Kd~~~l~~AYnD~~GvTa~FnlN~L~~iNr~Lg~dF~~~~f~h~a~yn~~~~rie---m~L~s~~  242 (301)
T TIGR03438       167 LGPGGGLLIGVDLVKDPAVLEAAYNDAAGVTAAFNLNLLRRLNRELGGDFDPDAFRHRAFYNEERSRIE---MHLVSRR  242 (301)
T ss_pred             HCCCCEEEEEECCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHCEEEEEECCCCCEEE---EEEEECC
T ss_conf             199984899404456989999873296442478999799999998477857655679999868778799---9998168


No 309
>pfam00107 ADH_zinc_N Zinc-binding dehydrogenase.
Probab=41.45  E-value=28  Score=15.91  Aligned_cols=72  Identities=32%  Similarity=0.468  Sum_probs=41.9

Q ss_pred             EEEEEECCCCC----CCCCCCEEEECCCCHHHHHHHHHHHCCC-CCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             27864112133----3469817830112207999999973138-874897532021102221015788989998898764
Q gi|254780313|r   96 TRVVAIDILDM----EPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFAL  170 (227)
Q Consensus        96 ~~VigVDl~~~----~~i~gv~~~~gDi~~~~~~~~i~~~l~~-~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~  170 (227)
                      .+|+++|..+-    ..--|+..+ -|..+.+..+.+....++ .+|+|+-     ++|..            ..+..+.
T Consensus        16 ~~Vi~~~~~~~r~~~a~~lGa~~~-i~~~~~~~~~~i~~~~~~~g~d~vid-----~~g~~------------~~~~~~~   77 (131)
T pfam00107        16 ARVIAVDRSEEKLELAKELGADHV-INYRDEDFVERVRELTGGRGVDVVID-----CVGAP------------ATLEQAL   77 (131)
T ss_pred             CEEEEEECCHHHHHHHHHCCCCCC-CCCCCCCHHHHHHHCCCCCCCEEEEE-----CCCCH------------HHHHHHH
T ss_conf             879999698899999997599732-35332212455654049977649886-----68866------------6799998


Q ss_pred             HCCCCCCEEEEEEEC
Q ss_conf             114877469999305
Q gi|254780313|r  171 EMLNIGGDFLVKTFQ  185 (227)
Q Consensus       171 ~~Lk~gG~fV~K~F~  185 (227)
                      .+++++|++++=-.-
T Consensus        78 ~~~~~~G~iv~~G~~   92 (131)
T pfam00107        78 ELLRPGGRVVVVGLP   92 (131)
T ss_pred             HHHCCCCEEEEEECC
T ss_conf             753599789999467


No 310
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=41.09  E-value=29  Score=15.88  Aligned_cols=86  Identities=22%  Similarity=0.227  Sum_probs=47.3

Q ss_pred             HHHHHCCCCCCEEEEEECCCC--CCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHH
Q ss_conf             999706878832786411213--334698178301122079999999731388748975320211022210157889899
Q gi|254780313|r   85 AARITGSNANNTRVVAIDILD--MEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLC  162 (227)
Q Consensus        85 a~~~~~~~~~~~~VigVDl~~--~~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~  162 (227)
                      +.+..-..|+  .|.+|--.+  +...+++..++.||++++...   +.+.+ +|+|+|--.+-.+++ +..|..+++..
T Consensus        16 i~~EA~~RGH--eVTAivRn~~K~~~~~~~~i~q~Difd~~~~a---~~l~g-~DaVIsA~~~~~~~~-~~~~~k~~~~l   88 (211)
T COG2910          16 ILKEALKRGH--EVTAIVRNASKLAARQGVTILQKDIFDLTSLA---SDLAG-HDAVISAFGAGASDN-DELHSKSIEAL   88 (211)
T ss_pred             HHHHHHHCCC--EEEEEEECHHHCCCCCCCEEECCCCCCHHHHH---HHHCC-CCEEEEECCCCCCCH-HHHHHHHHHHH
T ss_conf             9999986798--04899807676652235302000222745667---66358-766997215788871-57788899999


Q ss_pred             HHHHHHH--HHCCCCCC
Q ss_conf             9889876--41148774
Q gi|254780313|r  163 EAATFFA--LEMLNIGG  177 (227)
Q Consensus       163 ~~al~~A--~~~Lk~gG  177 (227)
                      ..++.=+  .++|--||
T Consensus        89 i~~l~~agv~RllVVGG  105 (211)
T COG2910          89 IEALKGAGVPRLLVVGG  105 (211)
T ss_pred             HHHHHHCCCEEEEEECC
T ss_conf             99986159705999847


No 311
>COG4022 Uncharacterized protein conserved in archaea [Function unknown]
Probab=40.86  E-value=29  Score=15.86  Aligned_cols=59  Identities=14%  Similarity=0.097  Sum_probs=41.3

Q ss_pred             EEECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             8301122079999999731388748975320211022210157889899988987641148
Q gi|254780313|r  114 FFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLN  174 (227)
Q Consensus       114 ~~~gDi~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk  174 (227)
                      ++.--+.+.++-+.+++..++..|+++-  |..+||....+.+...+-+..+..+|-+.++
T Consensus       170 kvAVTvada~~Ak~lR~le~~~l~llv~--aVH~TGi~~eeaq~l~~~~DiVT~CASK~iR  228 (286)
T COG4022         170 KVAVTVADAETAKRLRKLEADELDLLVI--AVHVTGIDEEEAQGLVENSDIVTSCASKYIR  228 (286)
T ss_pred             EEEEEECCHHHHHHHHHHHCCCCEEEEE--EEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             4899954878799999864676418999--9984366837777787630287772279999


No 312
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=40.76  E-value=29  Score=15.85  Aligned_cols=128  Identities=16%  Similarity=0.177  Sum_probs=62.9

Q ss_pred             CHHHHHHHHHHHHHHCCCCC--C--CCEEEEEECCCCHHH--H--HHHHHHCC-CCCCEEEEEECCCCC---------CC
Q ss_conf             44799999999986458313--7--967888504553068--9--99997068-788327864112133---------34
Q gi|254780313|r   47 WRARSAYKLLQINEKHQILQ--S--NRRIVDLGSSPGSWS--Q--VAARITGS-NANNTRVVAIDILDM---------EP  108 (227)
Q Consensus        47 yrsRaafKL~eId~kf~l~k--~--g~~VlDLGaaPGgWs--Q--va~~~~~~-~~~~~~VigVDl~~~---------~~  108 (227)
                      +|.+..|..++=.-.-.|++  +  --+|.-.||+-|-=.  -  .+.+..+. .+....|+|.||..-         -|
T Consensus        72 FR~~~~f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~  151 (268)
T COG1352          72 FRDPEHFEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYP  151 (268)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHCCCCC
T ss_conf             06908999999998799873046985399966768995589999999987332258743899997999999998628887


Q ss_pred             ----CCCC-------EEEEC-CC-C--HHHHHHHH--------HHH-CCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHH
Q ss_conf             ----6981-------78301-12-2--07999999--------973-138874897532021102221015788989998
Q gi|254780313|r  109 ----ILGV-------KFFKF-DF-L--DLDSWEFI--------RQA-IGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEA  164 (227)
Q Consensus       109 ----i~gv-------~~~~g-Di-~--~~~~~~~i--------~~~-l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~  164 (227)
                          ..|+       .|.++ |= .  .++....+        .+. +.+++|+|.|=   |+--  ..|...+.++   
T Consensus       152 ~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCR---NVLI--YFd~~~q~~i---  223 (268)
T COG1352         152 SRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCR---NVLI--YFDEETQERI---  223 (268)
T ss_pred             HHHHHCCCCHHHHHHHEEECCCCCEEECHHHHCCCEEEECCCCCCCCCCCCCCEEEEC---CEEE--EECHHHHHHH---
T ss_conf             6676544998999633764699847987687624377535788875435898889984---1488--6378999999---


Q ss_pred             HHHHHHHCCCCCCEEEEEE
Q ss_conf             8987641148774699993
Q gi|254780313|r  165 ATFFALEMLNIGGDFLVKT  183 (227)
Q Consensus       165 al~~A~~~Lk~gG~fV~K~  183 (227)
                       +..-...|++||.+++=.
T Consensus       224 -l~~f~~~L~~gG~LflG~  241 (268)
T COG1352         224 -LRRFADSLKPGGLLFLGH  241 (268)
T ss_pred             -HHHHHHHHCCCCEEEECC
T ss_conf             -999999748997899826


No 313
>pfam06859 Bin3 Bicoid-interacting protein 3 (Bin3). This family represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation. Note that family members contain a conserved HLN motif.
Probab=40.60  E-value=29  Score=15.83  Aligned_cols=19  Identities=16%  Similarity=0.186  Sum_probs=13.8

Q ss_pred             HHHHHHHCCCCCCEEEEEE
Q ss_conf             8987641148774699993
Q gi|254780313|r  165 ATFFALEMLNIGGDFLVKT  183 (227)
Q Consensus       165 al~~A~~~Lk~gG~fV~K~  183 (227)
                      .+.-....|+|||.||+.-
T Consensus        26 ~f~~~~~~l~pgg~lilEp   44 (110)
T pfam06859        26 FFRRIYRLLRPGGILILEP   44 (110)
T ss_pred             HHHHHHHHHCCCCEEEEEC
T ss_conf             9999999618898899967


No 314
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=40.33  E-value=29  Score=15.81  Aligned_cols=29  Identities=14%  Similarity=0.063  Sum_probs=12.0

Q ss_pred             CCEEEECCCCHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf             817830112207999999973138874897532
Q gi|254780313|r  111 GVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDM  143 (227)
Q Consensus       111 gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDm  143 (227)
                      ++.+++||+++.+.....   +. .+|+|++=+
T Consensus        44 ~~~~~~gDl~d~~~~~~~---~~-~~d~ViH~A   72 (328)
T TIGR03466        44 DVEIVEGDLRDPASLRKA---LA-GCRALFHVA   72 (328)
T ss_pred             CCEEEEEECCCHHHHHHH---HH-CCCEEEEEC
T ss_conf             977998207999999999---71-785897613


No 315
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB; InterPro: IPR011879    PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself . It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0000160 two-component signal transduction system (phosphorelay), 0006817 phosphate transport.
Probab=39.84  E-value=17  Score=17.21  Aligned_cols=73  Identities=26%  Similarity=0.417  Sum_probs=42.3

Q ss_pred             HHHHHHHHHCCCCCCEEEEC-CCHHHCCCCCCHHHHHHHHHHHH--HHHH--------HHCCCCCC-EEEEEEECCCCHH
Q ss_conf             99999997313887489753-20211022210157889899988--9876--------41148774-6999930599989
Q gi|254780313|r  123 DSWEFIRQAIGGNPDLVLSD-MAYPTIGHRKIDHLRTMSLCEAA--TFFA--------LEMLNIGG-DFLVKTFQGGTTN  190 (227)
Q Consensus       123 ~~~~~i~~~l~~~~DlVlSD-mapn~SG~~~~D~~~~~~L~~~a--l~~A--------~~~Lk~gG-~fV~K~F~G~~~~  190 (227)
                      +++..|.+   ..+||||=| |-|-+||+.-.-+.+.-+....+  +.+.        ..-|..|. -.|+|=|-   -.
T Consensus        37 ~A~~~~~E---~~PDLILLDWMLPG~SGIel~R~Lr~~~~Tr~iPIIMLTARGeE~Drv~GLetGADDYvtKPFS---p~  110 (226)
T TIGR02154        37 EALTLINE---RLPDLILLDWMLPGTSGIELARRLRREPETRAIPIIMLTARGEEEDRVRGLETGADDYVTKPFS---PR  110 (226)
T ss_pred             HHHHHHHC---CCCCEEEECCCCCCCCHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCC---HH
T ss_conf             99999860---7998899614789975699998734763314888177405556000113113688750367886---58


Q ss_pred             HHHHHHHHHCC
Q ss_conf             99999986258
Q gi|254780313|r  191 DILCLLKKHFQ  201 (227)
Q Consensus       191 ~l~~~l~~~F~  201 (227)
                      +|++.++....
T Consensus       111 EL~ARikAVLR  121 (226)
T TIGR02154       111 ELLARIKAVLR  121 (226)
T ss_pred             HHHHHHHHHHH
T ss_conf             89999999983


No 316
>PRK06182 short chain dehydrogenase; Validated
Probab=39.78  E-value=30  Score=15.75  Aligned_cols=145  Identities=17%  Similarity=0.224  Sum_probs=72.3

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCC--CCCC--CCCCEEEECCCCHHHHHHHHHHHC---CCCCCEE
Q ss_conf             79678885045530689999970687883278641121--3334--698178301122079999999731---3887489
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL--DMEP--ILGVKFFKFDFLDLDSWEFIRQAI---GGNPDLV  139 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~--~~~~--i~gv~~~~gDi~~~~~~~~i~~~l---~~~~DlV  139 (227)
                      ++.++|=-||+-| -=.-+++.....|  .+|++++..  ..+.  -.++..++.|+++++..+.+.+.+   -++.|++
T Consensus         2 k~Kv~lITGassG-IG~a~a~~la~~G--~~V~~~~r~~~~l~~l~~~~~~~~~~Dvt~~~~v~~~~~~i~~~~g~iDiL   78 (273)
T PRK06182          2 KKKVALVTGASSG-IGKATARKLIAEG--FTVYGAARRVDKMEDLASLGIHPLALDVTDEASMKAAVATILAEEGRIDVL   78 (273)
T ss_pred             CCCEEEEECCCHH-HHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCEE
T ss_conf             4698999063209-9999999999879--989999798999999996799799985899999999999999983998877


Q ss_pred             EECCCHHHCCC-CCC---HHHHHHHHHHHHH----HHHHHCCC--CCCEEEEE------E---ECC----------CCHH
Q ss_conf             75320211022-210---1578898999889----87641148--77469999------3---059----------9989
Q gi|254780313|r  140 LSDMAYPTIGH-RKI---DHLRTMSLCEAAT----FFALEMLN--IGGDFLVK------T---FQG----------GTTN  190 (227)
Q Consensus       140 lSDmapn~SG~-~~~---D~~~~~~L~~~al----~~A~~~Lk--~gG~fV~K------~---F~G----------~~~~  190 (227)
                      +.-.+....|. .+.   |-...++++....    ..++..++  .+|..|.=      +   +.+          .-++
T Consensus        79 VNNAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~lp~m~~~~~G~IvnisS~ag~~~~p~~~~Y~asK~av~~~t~  158 (273)
T PRK06182         79 VNNAGYGSYGAIEDVPIDEARAQFEVNLFGAARLTQLVLPHMRAQRSGRIINITSMGGKIYTPLGAWYHATKFALEGLSD  158 (273)
T ss_pred             EECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             50586777874887319999999998869999999985334214899589998684440779997579999999999999


Q ss_pred             HHHHHHHHHCCEEEEECCCCCCCC
Q ss_conf             999999862584699768665755
Q gi|254780313|r  191 DILCLLKKHFQKVIHVKPVASRAE  214 (227)
Q Consensus       191 ~l~~~l~~~F~~V~~~KP~aSR~~  214 (227)
                      .|...+..+=-.|..+-|-.-+.+
T Consensus       159 ~La~El~~~gI~V~~v~PG~v~T~  182 (273)
T PRK06182        159 ALRLEVAPFGIDVVVIEPGGIKTE  182 (273)
T ss_pred             HHHHHHCHHCCEEEEEECCCCCCC
T ss_conf             999984403878999973898688


No 317
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=39.40  E-value=30  Score=15.72  Aligned_cols=111  Identities=13%  Similarity=0.221  Sum_probs=61.1

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCC--------CCCCEEEECCCCHHHHHHHHHHHCC---CC
Q ss_conf             796788850455306899999706878832786411213334--------6981783011220799999997313---88
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP--------ILGVKFFKFDFLDLDSWEFIRQAIG---GN  135 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~--------i~gv~~~~gDi~~~~~~~~i~~~l~---~~  135 (227)
                      .|.++|=-|++-|==...+..+. ..|  ..|+.+|....+.        -..+.++++|+++++..+.+.+..-   ++
T Consensus         7 ~gKvalVTGas~GIG~aia~~la-~~G--a~Vv~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~   83 (251)
T PRK12481          7 NGKVAIITGCNTGLGQGMAIGLA-KAG--ADIVGVGVAEAPETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEVMGH   83 (251)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHH-HCC--CEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCC
T ss_conf             99989994867689999999999-869--999997898719999999975994799991279999999999999998199


Q ss_pred             CCEEEECCCHHHCC-CC---CCHHHHHHHHHHHHHH-----HHHHCCCC--CCEEE
Q ss_conf             74897532021102-22---1015788989998898-----76411487--74699
Q gi|254780313|r  136 PDLVLSDMAYPTIG-HR---KIDHLRTMSLCEAATF-----FALEMLNI--GGDFL  180 (227)
Q Consensus       136 ~DlVlSDmapn~SG-~~---~~D~~~~~~L~~~al~-----~A~~~Lk~--gG~fV  180 (227)
                      .|+++.-.+....+ ..   ..|-...++++.....     ++..++++  +|..|
T Consensus        84 iDilVNNAG~~~~~~~~~~~~~~w~~~~~vNl~~~~~~~q~~~~~m~~~~~~G~IV  139 (251)
T PRK12481         84 IDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKII  139 (251)
T ss_pred             CCEEEECCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf             98999899899999903499999999999983779999999999999856993487


No 318
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=39.03  E-value=31  Score=15.68  Aligned_cols=112  Identities=13%  Similarity=0.073  Sum_probs=59.4

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CCCCCCCEEEECCCCHHHHHHHHHHHC---CC
Q ss_conf             796788850455306899999706878832786411213---------334698178301122079999999731---38
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------MEPILGVKFFKFDFLDLDSWEFIRQAI---GG  134 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~~i~gv~~~~gDi~~~~~~~~i~~~l---~~  134 (227)
                      .|.++|=.|++-| -=.-+++.....|.  .|+.+|..+         +....++.++.+|+.+++..+.+.+..   -+
T Consensus         4 ~gK~~lVTGas~G-IG~aiA~~la~~Ga--~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~Dvs~~~~v~~~~~~~~~~~g   80 (238)
T PRK05786          4 KGKNVLIVGVSPG-LGYAVAYFALREGA--SVYAFARSEEKLKEIKKTLAKYGNVIYVVGDVSKLEGAREAAEKAAKVFG   80 (238)
T ss_pred             CCCEEEEECCCCH-HHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHC
T ss_conf             9988999289878-99999999998799--99999698899999999874359779997578999999999999999839


Q ss_pred             CCCEEEECCCHHHCCCC-CC-HHHHHHHHHH----HHHHHHHHCCCCCCEEEE
Q ss_conf             87489753202110222-10-1578898999----889876411487746999
Q gi|254780313|r  135 NPDLVLSDMAYPTIGHR-KI-DHLRTMSLCE----AATFFALEMLNIGGDFLV  181 (227)
Q Consensus       135 ~~DlVlSDmapn~SG~~-~~-D~~~~~~L~~----~al~~A~~~Lk~gG~fV~  181 (227)
                      ..|.++.-.+....... +. +....++.+.    .+...+...+++||..|.
T Consensus        81 ~iD~lv~naG~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~g~~ii~  133 (238)
T PRK05786         81 ALHGLVVTAGGYIEDTVEELAGLEDMLNNHLKAPLYAVNASLPLLREGSSIVL  133 (238)
T ss_pred             CCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE
T ss_conf             98879980575678852318999999999858999999999997421677999


No 319
>pfam05404 TRAP-delta Translocon-associated protein, delta subunit precursor (TRAP-delta). This family consists of several eukaryotic translocon-associated protein, delta subunit precursors (TRAP-delta or SSR-delta). The exact function of this protein is unknown.
Probab=38.46  E-value=26  Score=16.15  Aligned_cols=38  Identities=18%  Similarity=0.197  Sum_probs=26.3

Q ss_pred             CCCCCEEEEEEECCCCHHHHHHHHHHHCCEEEEECCCCC
Q ss_conf             487746999930599989999999862584699768665
Q gi|254780313|r  173 LNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVAS  211 (227)
Q Consensus       173 Lk~gG~fV~K~F~G~~~~~l~~~l~~~F~~V~~~KP~aS  211 (227)
                      -...|++.+|+|+-+.+..+++..+...+ +..+||-.+
T Consensus        90 ~a~sG~y~V~~fDEegysalRKAqR~ged-~s~VkpLft  127 (167)
T pfam05404        90 KASSGTYNVRFFDEEGYAALRKAQRNGED-VSSVKPLFT  127 (167)
T ss_pred             CCCCCCEEEEEECHHHHHHHHHHHHCCCC-CCCCCCCEE
T ss_conf             16678568999670889999988655886-444786679


No 320
>PRK09072 short chain dehydrogenase; Provisional
Probab=38.35  E-value=31  Score=15.61  Aligned_cols=145  Identities=16%  Similarity=0.159  Sum_probs=73.3

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC--C----CC--CCCCEEEECCCCHHHHHHHHHHHCC--CCC
Q ss_conf             796788850455306899999706878832786411213--3----34--6981783011220799999997313--887
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD--M----EP--ILGVKFFKFDFLDLDSWEFIRQAIG--GNP  136 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~--~----~~--i~gv~~~~gDi~~~~~~~~i~~~l~--~~~  136 (227)
                      .|.+||=-|++-| -=+-+++.....|.  +|+.++..+  .    +.  -.++..+..|+++.+..+.+.+...  +.+
T Consensus         4 ~~K~vlITGassG-IG~a~A~~la~~G~--~vil~~R~~~~L~~~~~~l~~~~~~~~~~Dls~~~~~~~~~~~~~~~g~i   80 (262)
T PRK09072          4 KDKRVLLTGASGG-IGEALAEALCAAGA--RLLLVGRNAEKLEALAARPYPGRVRWVVADLTSEAGREAVLARAREMGGI   80 (262)
T ss_pred             CCCEEEEECCCCH-HHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHCCC
T ss_conf             9988999486239-99999999998799--89999898999999999845897699997179999999999999984999


Q ss_pred             CEEEECCCHHHCCCC-CCH---HHHHHHHHHHHH-HH---HHHCCC--CCCEEEEE--E--ECCC---------------
Q ss_conf             489753202110222-101---578898999889-87---641148--77469999--3--0599---------------
Q gi|254780313|r  137 DLVLSDMAYPTIGHR-KID---HLRTMSLCEAAT-FF---ALEMLN--IGGDFLVK--T--FQGG---------------  187 (227)
Q Consensus       137 DlVlSDmapn~SG~~-~~D---~~~~~~L~~~al-~~---A~~~Lk--~gG~fV~K--~--F~G~---------------  187 (227)
                      |+++.-.+....|.- +.|   ....++++.... .+   ++..++  .+|..|.=  +  +.+.               
T Consensus        81 DiLInNAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~lt~~~lp~m~~~~~G~IvnisS~ag~~~~p~~~~Y~ASKaal~~  160 (262)
T PRK09072         81 NVLINNAGVNHFALLDQQDPEAIDRLLALNLTAPMQLTRALLPLLRAQPSAAVVNVGSTFGSIGYPGYASYCASKFALRG  160 (262)
T ss_pred             CEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCHHHHHHHHHHHH
T ss_conf             89998997788986354999999999999568999999999999987699489996686662578998179999999999


Q ss_pred             CHHHHHHHHHHHCCEEEEECCCCCCCC
Q ss_conf             989999999862584699768665755
Q gi|254780313|r  188 TTNDILCLLKKHFQKVIHVKPVASRAE  214 (227)
Q Consensus       188 ~~~~l~~~l~~~F~~V~~~KP~aSR~~  214 (227)
                      -++.|...+...=-.|..+-|-.-+..
T Consensus       161 ~s~sL~~El~~~gI~V~~v~Pg~v~T~  187 (262)
T PRK09072        161 FSEALRRELADTGVRVLYLAPRATRTA  187 (262)
T ss_pred             HHHHHHHHHCCCCEEEEEEECCCCCCC
T ss_conf             999999984622908999972899988


No 321
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=38.29  E-value=16  Score=17.50  Aligned_cols=38  Identities=26%  Similarity=0.526  Sum_probs=30.8

Q ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEE-EECCCC
Q ss_conf             999998818447999999999864583137967888-504553
Q gi|254780313|r   38 YVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVD-LGSSPG   79 (227)
Q Consensus        38 y~~~Ak~~gyrsRaafKL~eId~kf~l~k~g~~VlD-LGaaPG   79 (227)
                      .+=+++-+||  |-|-.|+.+-+||++  |--+.+| =||.||
T Consensus       127 NFGm~~PeGY--RKAlRlm~lAekf~~--Pvit~IDTpGAypG  165 (318)
T PRK05724        127 NFGMPRPEGY--RKALRLMEMAERFGL--PIITFIDTPGAYPG  165 (318)
T ss_pred             CCCCCCHHHH--HHHHHHHHHHHHCCC--CEEEEECCCCCCCC
T ss_conf             6799991789--999999999997099--77999348976789


No 322
>PRK04143 hypothetical protein; Provisional
Probab=38.25  E-value=5.6  Score=20.33  Aligned_cols=60  Identities=12%  Similarity=0.244  Sum_probs=37.7

Q ss_pred             HHHHCCCCCCCCEEEEEECCCCHHHHHH----HHHHCCCCCCEEEEEECCCCCCCC--CCCEEEECCCCHHH
Q ss_conf             9864583137967888504553068999----997068788327864112133346--98178301122079
Q gi|254780313|r   58 INEKHQILQSNRRIVDLGSSPGSWSQVA----ARITGSNANNTRVVAIDILDMEPI--LGVKFFKFDFLDLD  123 (227)
Q Consensus        58 Id~kf~l~k~g~~VlDLGaaPGgWsQva----~~~~~~~~~~~~VigVDl~~~~~i--~gv~~~~gDi~~~~  123 (227)
                      ..++..|+|.-++|-.=..+|-.|+++-    .......|    |+  |+..+.|+  +++...+||||...
T Consensus        32 ~~~~~~llR~L~Nvr~p~~~~~~~l~~qd~~L~~~~~~~~----i~--~~~~l~~~~~~~i~lw~GDIT~L~   97 (267)
T PRK04143         32 LTDLQDLLRALANVRPALPLSDEYLNLEDAYLSDENAERV----PT--DVKDLQPIKGTNIFLWHGDITTLK   97 (267)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCC----CC--CHHHCCCCCCCCEEEECCCCCEEE
T ss_conf             7999999999845589878998999999999999998568----61--488778478996679716353356


No 323
>KOG0822 consensus
Probab=38.04  E-value=32  Score=15.58  Aligned_cols=26  Identities=15%  Similarity=0.063  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf             98999889876411487746999930
Q gi|254780313|r  159 MSLCEAATFFALEMLNIGGDFLVKTF  184 (227)
Q Consensus       159 ~~L~~~al~~A~~~Lk~gG~fV~K~F  184 (227)
                      .||.-.+|+=|.++|++.|.++=--+
T Consensus       454 NELSPECLDG~q~fLkpdgIsIP~sY  479 (649)
T KOG0822         454 NELSPECLDGAQKFLKPDGISIPSSY  479 (649)
T ss_pred             CCCCHHHHHHHHHHCCCCCEECCCHH
T ss_conf             66797787778851588855756011


No 324
>pfam03435 Saccharop_dh Saccharopine dehydrogenase. This family comprised of three structural domains that can not be separated in the linear sequence. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase. The saccharopine dehydrogenase can also function as a saccharopine reductase.
Probab=37.68  E-value=32  Score=15.55  Aligned_cols=10  Identities=30%  Similarity=0.713  Sum_probs=6.4

Q ss_pred             EEEEEECCCC
Q ss_conf             7888504553
Q gi|254780313|r   70 RIVDLGSSPG   79 (227)
Q Consensus        70 ~VlDLGaaPG   79 (227)
                      .++++|.+||
T Consensus       118 ~~~~~G~~PG  127 (384)
T pfam03435       118 AVLGCGFDPG  127 (384)
T ss_pred             EEECCCCCCC
T ss_conf             9967888988


No 325
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=36.60  E-value=31  Score=15.67  Aligned_cols=58  Identities=24%  Similarity=0.287  Sum_probs=25.4

Q ss_pred             CCCCEEEEC-CCHHHCCCCCCHHHHHHHH--------HHHHHHHHHHCCCCCC-EEEEEEECCCCHHH
Q ss_conf             887489753-2021102221015788989--------9988987641148774-69999305999899
Q gi|254780313|r  134 GNPDLVLSD-MAYPTIGHRKIDHLRTMSL--------CEAATFFALEMLNIGG-DFLVKTFQGGTTND  191 (227)
Q Consensus       134 ~~~DlVlSD-mapn~SG~~~~D~~~~~~L--------~~~al~~A~~~Lk~gG-~fV~K~F~G~~~~~  191 (227)
                      .++|+|+.| ..|+.+|.....+.+....        +..-.+.+..-++-|- .+++|=|.-+.+.+
T Consensus        48 ~~~DLILLDi~mPd~~Glell~~lR~~~~~~~VI~ITa~~d~~~v~~Al~~Ga~DYLiKPf~~~rl~~  115 (239)
T PRK10430         48 TPIDLILLDIYMQQENGLDLLPVLHEAGCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEE  115 (239)
T ss_pred             CCCCEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHCCCHHHEECCCCHHHHHH
T ss_conf             99858997899999978999999998589981999972688999999998395030489999999999


No 326
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=36.51  E-value=29  Score=15.83  Aligned_cols=26  Identities=31%  Similarity=0.429  Sum_probs=18.2

Q ss_pred             CCCCCEEEEC-CCHHHCCCCCCHHHHH
Q ss_conf             3887489753-2021102221015788
Q gi|254780313|r  133 GGNPDLVLSD-MAYPTIGHRKIDHLRT  158 (227)
Q Consensus       133 ~~~~DlVlSD-mapn~SG~~~~D~~~~  158 (227)
                      ...+|+|+.| ..|..+|.....+.++
T Consensus        39 ~~~~dlvi~D~~mP~~~G~el~~~ir~   65 (113)
T cd00156          39 EEKPDLILLDIMMPGMDGLELLRRIRK   65 (113)
T ss_pred             HCCCCEEEECCCCCCCCCHHHHHHHHH
T ss_conf             579999997799989872699999998


No 327
>pfam00072 Response_reg Response regulator receiver domain. This domain receives the signal from the sensor partner in bacterial two-component systems. It is usually found N-terminal to a DNA binding effector domain.
Probab=36.36  E-value=34  Score=15.42  Aligned_cols=23  Identities=26%  Similarity=0.277  Sum_probs=16.5

Q ss_pred             CCCCCEEEEC-CCHHHCCCCCCHH
Q ss_conf             3887489753-2021102221015
Q gi|254780313|r  133 GGNPDLVLSD-MAYPTIGHRKIDH  155 (227)
Q Consensus       133 ~~~~DlVlSD-mapn~SG~~~~D~  155 (227)
                      ...+|+|+.| +.|+.+|.....+
T Consensus        40 ~~~~dlvi~Di~mP~~dG~el~~~   63 (111)
T pfam00072        40 EKRPDLILLDIRMPGMDGLELLRR   63 (111)
T ss_pred             HCCCCEEEEECCCCCCCHHHHHHH
T ss_conf             479989999536899501579999


No 328
>PRK06523 short chain dehydrogenase; Provisional
Probab=36.20  E-value=34  Score=15.40  Aligned_cols=110  Identities=16%  Similarity=0.200  Sum_probs=60.2

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC-CCCCCCEEEECCCCHHHHHHHHH----HHCCCCCCEEEE
Q ss_conf             7967888504553068999997068788327864112133-34698178301122079999999----731388748975
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM-EPILGVKFFKFDFLDLDSWEFIR----QAIGGNPDLVLS  141 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~-~~i~gv~~~~gDi~~~~~~~~i~----~~l~~~~DlVlS  141 (227)
                      .|.++|=.|++-|==.. +++.....|.  .|+..+.... +....+.++++|+++++..+.+.    +.+ +++|.++.
T Consensus         8 ~gK~alITG~s~GIG~a-ia~~la~~Ga--~V~~~~r~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~-g~iDiLVn   83 (260)
T PRK06523          8 AGKRALVTGGTKGIGAA-TVARFREAGA--RVVTTARSRPDDLPEGVEFVAADLTTAEGCAAVARAVLERL-GGVDILVH   83 (260)
T ss_pred             CCCEEEEECCCCHHHHH-HHHHHHHCCC--EEEEEECCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHC-CCCCEEEE
T ss_conf             99989994757699999-9999998799--99999488401379862899837999999999999999974-99979998


Q ss_pred             CCC---HHHCCCCCCHHH---HHHHHHHHH----HHHHHHCC--CCCCEEE
Q ss_conf             320---211022210157---889899988----98764114--8774699
Q gi|254780313|r  142 DMA---YPTIGHRKIDHL---RTMSLCEAA----TFFALEML--NIGGDFL  180 (227)
Q Consensus       142 Dma---pn~SG~~~~D~~---~~~~L~~~a----l~~A~~~L--k~gG~fV  180 (227)
                      -.+   |...+..+++..   ..++++...    +..+...+  +.+|..|
T Consensus        84 NAG~~~~~~~~~~~~~~~~w~~~~~~Nl~~~~~~~q~~~p~m~~~~~G~Ii  134 (260)
T PRK06523         84 VLGGSSAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPAMIARGSGVII  134 (260)
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf             998876799880319999999999998499999999999999983998669


No 329
>PRK06057 short chain dehydrogenase; Provisional
Probab=35.92  E-value=34  Score=15.37  Aligned_cols=110  Identities=19%  Similarity=0.211  Sum_probs=59.0

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC------CCCCCCCEEEECCCCHHHHHHHHHHHCC---CCCC
Q ss_conf             796788850455306899999706878832786411213------3346981783011220799999997313---8874
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD------MEPILGVKFFKFDFLDLDSWEFIRQAIG---GNPD  137 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~------~~~i~gv~~~~gDi~~~~~~~~i~~~l~---~~~D  137 (227)
                      .|.++|=-|++-|== .-+++.....|  .+|+.+|+.+      .+.+ +..++++|+++++..+.+.+...   ++.|
T Consensus         6 ~gKvalVTGas~GIG-~aia~~la~~G--a~Vvi~d~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~v~~~~~~~G~iD   81 (255)
T PRK06057          6 AGRVAVITGGASGIG-LATARRMRAEG--ATVVVGDIDPEAGKAAADEL-GGLFVQVDVTDEDAVNALFDTAAETYGSVD   81 (255)
T ss_pred             CCCEEEEECCCCHHH-HHHHHHHHHCC--CEEEEEECCHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHHHHHHHHCCCC
T ss_conf             999899968488899-99999999869--98999969889999999864-997999816999999999999999819987


Q ss_pred             EEEECCCHHH---CCCCCCHH---HHHHHHHHHHHH----HHHHCCCC--CCEEE
Q ss_conf             8975320211---02221015---788989998898----76411487--74699
Q gi|254780313|r  138 LVLSDMAYPT---IGHRKIDH---LRTMSLCEAATF----FALEMLNI--GGDFL  180 (227)
Q Consensus       138 lVlSDmapn~---SG~~~~D~---~~~~~L~~~al~----~A~~~Lk~--gG~fV  180 (227)
                      +++.-.+...   ....+.+.   .+.++++.....    .+...+++  +|..|
T Consensus        82 iLVNnAGi~~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IV  136 (255)
T PRK06057         82 IAFNNAGISPPEDDSILNTGLDAWQRVQDVNLKSVYLCCKAALPHMVEAGKGSII  136 (255)
T ss_pred             EEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf             8998885578899862009999999999998299999999999999983995899


No 330
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=35.70  E-value=35  Score=15.35  Aligned_cols=111  Identities=17%  Similarity=0.214  Sum_probs=59.5

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC--CCC--------CCCCEEEECCCCHHHHHHHH----HHHC
Q ss_conf             796788850455306899999706878832786411213--334--------69817830112207999999----9731
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD--MEP--------ILGVKFFKFDFLDLDSWEFI----RQAI  132 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~--~~~--------i~gv~~~~gDi~~~~~~~~i----~~~l  132 (227)
                      .|.++|=-|++- |-=.-+++.....|-  +|+-+|...  .+.        -..+..+++|+++++..+.+    .+.+
T Consensus         2 ~gKvalITG~s~-GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~g~~~~~~~~Dv~d~~~v~~~v~~~~~~~   78 (250)
T TIGR03206         2 KDKTAIVTGGGG-GIGGATCRRFAEEGA--KVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQAL   78 (250)
T ss_pred             CCCEEEEECCCC-HHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHC
T ss_conf             519999968576-899999999998799--99999798899999999999539928999944899999999999999975


Q ss_pred             CCCCCEEEECCCHHHCCCC-CC---HHHHHHHHHHHHHH----HHHHCC--CCCCEEEE
Q ss_conf             3887489753202110222-10---15788989998898----764114--87746999
Q gi|254780313|r  133 GGNPDLVLSDMAYPTIGHR-KI---DHLRTMSLCEAATF----FALEML--NIGGDFLV  181 (227)
Q Consensus       133 ~~~~DlVlSDmapn~SG~~-~~---D~~~~~~L~~~al~----~A~~~L--k~gG~fV~  181 (227)
                       ++.|+++.-.+.+..+.- +.   |-...++++.....    .+...+  +.+|..|.
T Consensus        79 -G~iDilvnnAg~~~~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVn  136 (250)
T TIGR03206        79 -GPVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERGAGRIVN  136 (250)
T ss_pred             -CCCCEEEECCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf             -9997999898889998903499999999999982999999999999999749917999


No 331
>PRK11173 two-component response regulator; Provisional
Probab=35.62  E-value=35  Score=15.34  Aligned_cols=50  Identities=14%  Similarity=0.044  Sum_probs=32.5

Q ss_pred             HHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHH
Q ss_conf             99998818447999999999864583137967888504553068999997
Q gi|254780313|r   39 VQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI   88 (227)
Q Consensus        39 ~~~Ak~~gyrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~   88 (227)
                      ..--..+||.-..|.-..|..+.+.--.+.-.++|++-.-....+++.+.
T Consensus        20 ~~~L~~~G~~V~~a~~~~ea~~~l~~~~~DlvilDi~lp~~~G~~l~~~i   69 (237)
T PRK11173         20 KSIFEAEGYDVFEATDGAEMHQILSENDINLVIMDINLPGKNGLLLAREL   69 (237)
T ss_pred             HHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHH
T ss_conf             99999889999998999999999863899899993899988730355566


No 332
>KOG1198 consensus
Probab=35.32  E-value=35  Score=15.31  Aligned_cols=79  Identities=24%  Similarity=0.379  Sum_probs=46.4

Q ss_pred             HHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECC---CCCCCCCCCEEEECCCCHHHHHHHHHHHCCCC
Q ss_conf             864583137967888504553068999997068788327864112---13334698178301122079999999731388
Q gi|254780313|r   59 NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI---LDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN  135 (227)
Q Consensus        59 d~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl---~~~~~i~gv~~~~gDi~~~~~~~~i~~~l~~~  135 (227)
                      +..++ .++|+.||=+|++ ||-.|.|.++....+ -..|+++=-   .++..--|+... -|-.+++..+.+.+..+++
T Consensus       150 ~~~~~-~~~g~~vLv~ggs-ggVG~~aiQlAk~~~-~~~v~t~~s~e~~~l~k~lGAd~v-vdy~~~~~~e~~kk~~~~~  225 (347)
T KOG1198         150 KRSKK-LSKGKSVLVLGGS-GGVGTAAIQLAKHAG-AIKVVTACSKEKLELVKKLGADEV-VDYKDENVVELIKKYTGKG  225 (347)
T ss_pred             CCCCC-CCCCCEEEEEECC-CHHHHHHHHHHHHCC-CCEEEEEECCCCHHHHHHCCCCCC-CCCCCHHHHHHHHHHCCCC
T ss_conf             43235-6899869999387-489999999998749-747999815541689997299651-2488577999987622788


Q ss_pred             CCEEEE
Q ss_conf             748975
Q gi|254780313|r  136 PDLVLS  141 (227)
Q Consensus       136 ~DlVlS  141 (227)
                      +|+|+-
T Consensus       226 ~DvVlD  231 (347)
T KOG1198         226 VDVVLD  231 (347)
T ss_pred             CEEEEE
T ss_conf             509998


No 333
>PRK11917 bifunctional adhesin/ABC transporter aspartate/glutamate-binding protein; Reviewed
Probab=34.91  E-value=11  Score=18.48  Aligned_cols=20  Identities=15%  Similarity=0.057  Sum_probs=14.0

Q ss_pred             HHHHHCCCCCCEEEECCCHH
Q ss_conf             99973138874897532021
Q gi|254780313|r  127 FIRQAIGGNPDLVLSDMAYP  146 (227)
Q Consensus       127 ~i~~~l~~~~DlVlSDmapn  146 (227)
                      .+.....+++|+|++.|..+
T Consensus        93 ~~p~L~~gkvD~i~~~~tiT  112 (259)
T PRK11917         93 RGPLLDNGSVDAVIATFTIT  112 (259)
T ss_pred             HHHHHHCCCEEEEEECCCCC
T ss_conf             76898779855998664767


No 334
>PRK09186 flagellin modification protein A; Provisional
Probab=34.83  E-value=36  Score=15.26  Aligned_cols=78  Identities=15%  Similarity=0.078  Sum_probs=46.7

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CCC--CCCCEEEECCCCHHHHHHHHHHHCC--
Q ss_conf             796788850455306899999706878832786411213---------334--6981783011220799999997313--
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------MEP--ILGVKFFKFDFLDLDSWEFIRQAIG--  133 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~~--i~gv~~~~gDi~~~~~~~~i~~~l~--  133 (227)
                      .|.++|=-|++-|== .-+++.....|  ..|+.+|+..         +..  -..+.++++|+++++..+.+.+...  
T Consensus         3 ~gK~~lVTGgs~GIG-~aia~~la~~G--a~V~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~Dvt~~~~v~~~~~~~~~~   79 (255)
T PRK09186          3 EGKTILITGAGGLIG-SALVKAILEAG--GIVIAADINKEALNKLLESLGTIEKTKLTLVELDITDQESLEEFLSKSQER   79 (255)
T ss_pred             CCCEEEEECCCCHHH-HHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf             959899979586899-99999999879--999999698899999999998705980799984689999999999999998


Q ss_pred             -CCCCEEEECCCHHH
Q ss_conf             -88748975320211
Q gi|254780313|r  134 -GNPDLVLSDMAYPT  147 (227)
Q Consensus       134 -~~~DlVlSDmapn~  147 (227)
                       ++.|+++.-.+|..
T Consensus        80 ~g~id~lVnnA~~~~   94 (255)
T PRK09186         80 YGKIDGAVNCAYPRN   94 (255)
T ss_pred             HCCCCEEEECCCCCC
T ss_conf             199778997576678


No 335
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=34.83  E-value=36  Score=15.26  Aligned_cols=11  Identities=0%  Similarity=0.208  Sum_probs=5.7

Q ss_pred             CEEEEEECCCC
Q ss_conf             67888504553
Q gi|254780313|r   69 RRIVDLGSSPG   79 (227)
Q Consensus        69 ~~VlDLGaaPG   79 (227)
                      +.|++|+|.++
T Consensus        75 d~V~HlAa~~~   85 (338)
T PRK10675         75 DTVIHFAGLKA   85 (338)
T ss_pred             CEEEECCCCCC
T ss_conf             99998986545


No 336
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=34.77  E-value=36  Score=15.26  Aligned_cols=79  Identities=22%  Similarity=0.280  Sum_probs=44.0

Q ss_pred             CCCCC-CEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCC--CCCC------------------CCC--CEEEECCCC
Q ss_conf             31379-678885045530689999970687883278641121--3334------------------698--178301122
Q gi|254780313|r   64 ILQSN-RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL--DMEP------------------ILG--VKFFKFDFL  120 (227)
Q Consensus        64 l~k~g-~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~--~~~~------------------i~g--v~~~~gDi~  120 (227)
                      -+..| .+||=+||+-|-=  .|++....-|.+...+||=.-  +-+.                  -.|  +..+.||.+
T Consensus        36 ~~~~gpK~VLViGaStGyG--LAsRI~aaFg~gA~TiGV~fEr~~~~~k~gtaGWYN~~aF~~~A~~~Gl~a~~~ngDAF  113 (400)
T PRK13656         36 PIANGPKKVLVIGASSGYG--LASRITAAFGSGADTLGVFFERPGSEKKPGTAGWYNSAAFDKFAKAAGLYAKSINGDAF  113 (400)
T ss_pred             CCCCCCCEEEEEECCCCCC--HHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEECCCCCC
T ss_conf             8678996389994687631--99999998548987267885158889987786431689999999977972121452006


Q ss_pred             HHHHHHH----HHHHCCCCCCEEEEC-CCH
Q ss_conf             0799999----997313887489753-202
Q gi|254780313|r  121 DLDSWEF----IRQAIGGNPDLVLSD-MAY  145 (227)
Q Consensus       121 ~~~~~~~----i~~~l~~~~DlVlSD-map  145 (227)
                      +.++.+.    |++.+ |++|+|+=- .||
T Consensus       114 S~e~K~~vI~~Ik~~~-G~vDlvVYSLAap  142 (400)
T PRK13656        114 SDEIKQKVIELIKQDL-GQVDLVVYSLASP  142 (400)
T ss_pred             CHHHHHHHHHHHHHHC-CCCCEEEEECCCC
T ss_conf             7899999999999865-9846799964577


No 337
>KOG4022 consensus
Probab=34.44  E-value=36  Score=15.22  Aligned_cols=88  Identities=18%  Similarity=0.173  Sum_probs=48.9

Q ss_pred             CCEEEEEECCCCCCCCCCCEEEECC--CCH--HHHHHHHHHHCC-CCCCEEEECCCHHHCCCC-CCHHHHHHHH------
Q ss_conf             8327864112133346981783011--220--799999997313-887489753202110222-1015788989------
Q gi|254780313|r   94 NNTRVVAIDILDMEPILGVKFFKFD--FLD--LDSWEFIRQAIG-GNPDLVLSDMAYPTIGHR-KIDHLRTMSL------  161 (227)
Q Consensus        94 ~~~~VigVDl~~~~~i~gv~~~~gD--i~~--~~~~~~i~~~l~-~~~DlVlSDmapn~SG~~-~~D~~~~~~L------  161 (227)
                      ++..|..||+.+-+.-.--..+.+|  +++  ....+++-+.+. .++|.|+|=..-=..|+. +.|-....+|      
T Consensus        26 nnywV~siDl~eNe~Ad~sI~V~~~~swtEQe~~v~~~vg~sL~gekvDav~CVAGGWAGGnAksKdl~KNaDLMwKQSv  105 (236)
T KOG4022          26 NNYWVLSIDLSENEQADSSILVDGNKSWTEQEQSVLEQVGSSLQGEKVDAVFCVAGGWAGGNAKSKDLVKNADLMWKQSV  105 (236)
T ss_pred             CCEEEEEEEECCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHCHHHHHHHHH
T ss_conf             68689997502566566117963775356889999999987624253436999605545777422566643026778889


Q ss_pred             --HHHHHHHHHHCCCCCCEEEE
Q ss_conf             --99889876411487746999
Q gi|254780313|r  162 --CEAATFFALEMLNIGGDFLV  181 (227)
Q Consensus       162 --~~~al~~A~~~Lk~gG~fV~  181 (227)
                        ......+|...|++||-+-.
T Consensus       106 wtSaIsa~lAt~HLK~GGLL~L  127 (236)
T KOG4022         106 WTSAISAKLATTHLKPGGLLQL  127 (236)
T ss_pred             HHHHHHHHHHHHCCCCCCEEEE
T ss_conf             9999999999843588853552


No 338
>CHL00194 ycf39 Ycf39; Provisional
Probab=34.28  E-value=37  Score=15.21  Aligned_cols=67  Identities=12%  Similarity=0.189  Sum_probs=30.2

Q ss_pred             CEEEEEECCCCHHH-HHHHHHHCCCCCCEEEEEECCCCCCC--CCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             67888504553068-99999706878832786411213334--698178301122079999999731388748975
Q gi|254780313|r   69 RRIVDLGSSPGSWS-QVAARITGSNANNTRVVAIDILDMEP--ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLS  141 (227)
Q Consensus        69 ~~VlDLGaaPGgWs-Qva~~~~~~~~~~~~VigVDl~~~~~--i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlS  141 (227)
                      |+||=.|+ -|-== +++.++. ..|...+++.=+......  ..|+..+.||+.++++...   .+.| +|.|+.
T Consensus         1 M~ILV~GA-TG~lGr~vVr~Ll-~~G~~Vr~lvRnp~ka~~l~~~Gve~v~gDl~dpesl~~---Al~G-vdaVi~   70 (319)
T CHL00194          1 MSLLVIGA-TGTLGRQIVRRAL-DEGYQVKCLVRNLRKAAFLKEWGAELVYGDLSLPETIPP---ALEG-ITAIID   70 (319)
T ss_pred             CEEEEECC-CCHHHHHHHHHHH-HCCCCEEEEECCHHHHHHHHHCCCEEEEECCCCHHHHHH---HHCC-CCEEEE
T ss_conf             97999899-8589999999999-688908999578676323421596799942788778999---9659-967999


No 339
>pfam12241 Enoyl_reductase Trans-2-enoyl-CoA reductase catalytic region. This family of trans-2-enoyl-CoA reductases, EC:1.3.1.44, carries the the catalytic sites of the enzyme, characterized by the conserved sequence motifs: YNThhhFxK, and YShAPxR. In Euglena where the enzyme has been characterized it catalyses the reduction of enoyl-CoA to acyl-CoA in an unusual fatty acid pathway in mitochondria. the whole path performs a malonyl-CoA independent synthesis of fatty acids leading to accumulation of wax esters, which serve as the sink for electrons stemming from glycolytic ATP synthesis and pyruvate oxidation.
Probab=34.27  E-value=37  Score=15.21  Aligned_cols=21  Identities=29%  Similarity=0.567  Sum_probs=15.5

Q ss_pred             HHHHHHCCCHHHHHHHHHCCHHHH
Q ss_conf             999964089999999881844799
Q gi|254780313|r   28 DWLNRHINDPYVQRAQLEGWRARS   51 (227)
Q Consensus        28 ~W~~r~~~D~y~~~Ak~~gyrsRa   51 (227)
                      -|++..   .|-+.|+++|+-+++
T Consensus         7 GWYN~~---aF~~~A~~~Gl~Ak~   27 (237)
T pfam12241         7 GWYNNA---AFEKEAEEAGLYAKS   27 (237)
T ss_pred             CHHHHH---HHHHHHHHCCCEEEE
T ss_conf             237689---999999977983464


No 340
>PRK12746 short chain dehydrogenase; Provisional
Probab=34.15  E-value=37  Score=15.20  Aligned_cols=114  Identities=13%  Similarity=0.131  Sum_probs=59.3

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEE-EEECCCC-------CCC-CCCCEEEECCCCHHHHHHHHH----HHC-
Q ss_conf             79678885045530689999970687883278-6411213-------334-698178301122079999999----731-
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRV-VAIDILD-------MEP-ILGVKFFKFDFLDLDSWEFIR----QAI-  132 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~V-igVDl~~-------~~~-i~gv~~~~gDi~~~~~~~~i~----~~l-  132 (227)
                      .|.++|=.|++.| -=.-+++....+|....+ .+.|-..       ++. -..+.++++|+++.+..+.+.    +.+ 
T Consensus         5 ~gKvalITGga~G-IG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~   83 (254)
T PRK12746          5 DGKVALVTGASRG-IGRAIAMRLANDGALVAIHYGRNKAAADETIREIESNGGKAFLIEADLNSIDGVKKLVEQLKNELQ   83 (254)
T ss_pred             CCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHH
T ss_conf             9988999484768-999999999987999999659998999999999985599289997577999999999999999986


Q ss_pred             ----CCCCCEEEECCCHHHCCC-CCCH---HHHHHHHHHHH----HHHHHHCCCCCCEEEE
Q ss_conf             ----388748975320211022-2101---57889899988----9876411487746999
Q gi|254780313|r  133 ----GGNPDLVLSDMAYPTIGH-RKID---HLRTMSLCEAA----TFFALEMLNIGGDFLV  181 (227)
Q Consensus       133 ----~~~~DlVlSDmapn~SG~-~~~D---~~~~~~L~~~a----l~~A~~~Lk~gG~fV~  181 (227)
                          .+++|++++..+....+. .+.+   -...++++...    ...+...++.+|..|.
T Consensus        84 ~~~g~g~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~f~~~k~~~p~m~~~G~IVn  144 (254)
T PRK12746         84 IRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVIN  144 (254)
T ss_pred             HHCCCCCCCEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf             6416898518997997889999144999999999998534689999999999861696699


No 341
>KOG2232 consensus
Probab=33.48  E-value=11  Score=18.55  Aligned_cols=37  Identities=16%  Similarity=0.264  Sum_probs=25.0

Q ss_pred             HHHHHHHCCCCCCCCEE----EEEECCCCHHHHHHHHHHCC
Q ss_conf             99998645831379678----88504553068999997068
Q gi|254780313|r   55 LLQINEKHQILQSNRRI----VDLGSSPGSWSQVAARITGS   91 (227)
Q Consensus        55 L~eId~kf~l~k~g~~V----lDLGaaPGgWsQva~~~~~~   91 (227)
                      +..++.+|.-+...++|    .+--++|||+.||+...+..
T Consensus       101 i~RLqarYG~lY~~~NVaiSGtHTHagPgGylqy~~y~vts  141 (734)
T KOG2232         101 IERLQARYGNLYTEDNVAISGTHTHAGPGGYLQYVLYIVTS  141 (734)
T ss_pred             HHHHHHHHCCCCCCCCEEEECCCCCCCCCCEEEEEEEEEHH
T ss_conf             99998764342003644675210367886415552231012


No 342
>pfam01073 3Beta_HSD 3-beta hydroxysteroid dehydrogenase/isomerase family. The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones.
Probab=32.86  E-value=38  Score=15.06  Aligned_cols=30  Identities=17%  Similarity=0.188  Sum_probs=14.8

Q ss_pred             CCCEEEECCCCHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf             9817830112207999999973138874897532
Q gi|254780313|r  110 LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDM  143 (227)
Q Consensus       110 ~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDm  143 (227)
                      ..+.+++||+++.+..+.+.+    .+|+|++=+
T Consensus        45 ~~~~~v~gDl~d~~~l~~~~~----~~D~V~H~A   74 (280)
T pfam01073        45 QVITYIEGDVTDKQDLRRALQ----GSDVVIHTA   74 (280)
T ss_pred             CCCEEEECCCCCHHHHHHHHH----CCCEEEEEC
T ss_conf             887599912899999999984----799899721


No 343
>pfam05575 V_cholerae_RfbT Vibrio cholerae RfbT protein. This family consists of several RfbT proteins from Vibrio cholerae. It has been found that genetic alteration of the rfbT gene is responsible for serotype conversion of Vibrio cholerae O1 and determines the difference between the Ogawa and Inaba serotypes, in that the presence of rfbT is sufficient for Inaba-to-Ogawa serotype conversion.
Probab=32.84  E-value=39  Score=15.06  Aligned_cols=141  Identities=21%  Similarity=0.321  Sum_probs=69.5

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCC-CCCC-C--------CCCEEEE--CCCCHHH--HH-----
Q ss_conf             1379678885045530689999970687883278641121-3334-6--------9817830--1122079--99-----
Q gi|254780313|r   65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL-DMEP-I--------LGVKFFK--FDFLDLD--SW-----  125 (227)
Q Consensus        65 ~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~-~~~~-i--------~gv~~~~--gDi~~~~--~~-----  125 (227)
                      .+...+.+|+|+.-|-|+-.|++.+.    .|+|+++..+ +|+. +        |-|.|..  +-|.+.+  ..     
T Consensus        77 ckhdttyidiganvgtfcgiaarhit----qgkiiaiepltemensirmnvqlnnplvefhhfgcaigenegenifevye  152 (286)
T pfam05575        77 CKHDTTYIDIGANVGTFCGIAARHIT----QGKIIAIEPLTEMENSIRMNVQLNNPLVEFHHFGCAIGENEGENIFEVYE  152 (286)
T ss_pred             CCCCCEEEEECCCCCCCHHHHHHHCC----CCCEEEEECHHHHHHHEEEEEEECCCCEEEEECCEEECCCCCCCEEEEEE
T ss_conf             25776389706662121105556404----67269983005542023664560785125343122204667763478987


Q ss_pred             --HH-----------HHHHCC-CCC---CEEEECCCHHHCCCCCCHHH-HHHHHHHHHHHHHHHCCCCCCE--EEEEEEC
Q ss_conf             --99-----------997313-887---48975320211022210157-8898999889876411487746--9999305
Q gi|254780313|r  126 --EF-----------IRQAIG-GNP---DLVLSDMAYPTIGHRKIDHL-RTMSLCEAATFFALEMLNIGGD--FLVKTFQ  185 (227)
Q Consensus       126 --~~-----------i~~~l~-~~~---DlVlSDmapn~SG~~~~D~~-~~~~L~~~al~~A~~~Lk~gG~--fV~K~F~  185 (227)
                        ..           |..... ..+   .+---|++|--|-.-.+|.. .-+++.....++..   +.+|.  .+|=-|.
T Consensus       153 fdnrvsslyfkkntdiadkvknsqvlvrklssldisptnsvvikidaegaeieilnqiyefte---khngieyyicfefa  229 (286)
T pfam05575       153 FDNRVSSLYFKKNTDIADKVKNSQVLVRKLSSLDISPTNSVVIKIDAEGAEIEILNQIYEFTE---KHNGIEYYICFEFA  229 (286)
T ss_pred             ECCCEEEEEEECCCCHHHHHCCHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH---HCCCEEEEEEEHHH
T ss_conf             337100467732774787613307777555206658886089998378750258989998776---33886899870443


Q ss_pred             -------CCCHHHHHHHHHHHCC-EEEEECCCCCC
Q ss_conf             -------9998999999986258-46997686657
Q gi|254780313|r  186 -------GGTTNDILCLLKKHFQ-KVIHVKPVASR  212 (227)
Q Consensus       186 -------G~~~~~l~~~l~~~F~-~V~~~KP~aSR  212 (227)
                             ...+.++...+...|. +.+.+.|.+|-
T Consensus       230 mghiqrsnrtfdeifniinskfgskayfihplssa  264 (286)
T pfam05575       230 MGHIQRSNRTFDEIFNIINSKFGSKAYFIHPLSSA  264 (286)
T ss_pred             HHHHHHCCCCHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf             22465336549999998753036723786005434


No 344
>pfam03341 Pox_mRNA-cap Poxvirus mRNA capping enzyme, small subunit. The small subunit of the poxvirus mRNA capping enzyme has been found to have a structure which suggests that it started life as an RNA cap 2-prime O-methyltransferase. It has subsequently evolved to a catalytically inactive form that has been retained in order to help stabilize the large subunit, D1, and to enhance its methyltransferase activity through an allosteric mechanism.
Probab=32.81  E-value=30  Score=15.73  Aligned_cols=89  Identities=20%  Similarity=0.261  Sum_probs=48.0

Q ss_pred             CCCCEEEECCCHHHC-CCCCCHHHHHHH-HHHHHHHHH------HHC------CCCCCEEEEEE--ECCCCHHHHHHHHH
Q ss_conf             887489753202110-222101578898-999889876------411------48774699993--05999899999998
Q gi|254780313|r  134 GNPDLVLSDMAYPTI-GHRKIDHLRTMS-LCEAATFFA------LEM------LNIGGDFLVKT--FQGGTTNDILCLLK  197 (227)
Q Consensus       134 ~~~DlVlSDmapn~S-G~~~~D~~~~~~-L~~~al~~A------~~~------Lk~gG~fV~K~--F~G~~~~~l~~~l~  197 (227)
                      .++|.|+.|+++.-. =-++.+..++.. |.+.-|.++      ..+      +...-..|+|+  .-|.....-++...
T Consensus        94 ikADAVV~DLSA~nkLfkker~~ikSNN~L~eNNLyisdY~mlTFeVfRPlf~~~sEk~civKlPTLFGr~vv~~~RVYC  173 (287)
T pfam03341        94 IKADAVVADLSARNKLFKKERDAIKSNNYLTENNLYISDYKMLTFEVFRPLFDISSEKFCIVKLPTLFGRTVVNAVRVYC  173 (287)
T ss_pred             CCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCEEEHHHHHHHHHHCCCEEEEEECCCHHCCHHHHHHHHHH
T ss_conf             44567998430122566644667634672232646774041341135567877232417999754041311577778877


Q ss_pred             HHCCEEEEECCCC-CC-CCCCEEEEEECC
Q ss_conf             6258469976866-57-558249898307
Q gi|254780313|r  198 KHFQKVIHVKPVA-SR-AESVEMFLLAKG  224 (227)
Q Consensus       198 ~~F~~V~~~KP~a-SR-~~S~E~Ylv~~g  224 (227)
                      ..|+.|+.+|-.+ |- ++|+  -+||.+
T Consensus       174 SlFk~VrLfKc~sDSWlKDSA--imVas~  200 (287)
T pfam03341       174 SLFKNVRLFKCVSDSWLKDSA--IMVASD  200 (287)
T ss_pred             HHHHHEEEEECCCCCHHCCCE--EEEECC
T ss_conf             553004666316510112413--778547


No 345
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=32.68  E-value=39  Score=15.04  Aligned_cols=158  Identities=10%  Similarity=0.091  Sum_probs=69.4

Q ss_pred             HHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCH-HHHHHHHHHCCCC---CCEEEE-EECCCCCCCCC----CC
Q ss_conf             988184479999999998645831379678885045530-6899999706878---832786-41121333469----81
Q gi|254780313|r   42 AQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS-WSQVAARITGSNA---NNTRVV-AIDILDMEPIL----GV  112 (227)
Q Consensus        42 Ak~~gyrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGg-WsQva~~~~~~~~---~~~~Vi-gVDl~~~~~i~----gv  112 (227)
                      =..+||....|.-..|..+.+.--.+.-.+||++- |++ =.+++.+ +...+   .-+.|+ +-.-...+-+.    |+
T Consensus        22 L~~~g~~v~~a~~g~~a~~~l~~~~~DliilDi~l-P~~dG~~~~~~-ir~~~~~~~~PII~lta~~~~~d~v~gl~~GA   99 (229)
T PRK10161         22 LEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWML-PGGSGIQFIKH-LKRESMTRDIPVVMLTARGEEEDRVRGLETGA   99 (229)
T ss_pred             HHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCC-CCCCCHHHHHH-HHHCCCCCCCCEEEEECCCCHHHHHHHHHCCC
T ss_conf             99779999998999999999852899899997899-88763358788-77502468975899955666577999987698


Q ss_pred             -EEEECCCCHHHHHHHHHHHCCC----CCCEE--EECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE---
Q ss_conf             -7830112207999999973138----87489--7532021102221015788989998898764114877469999---
Q gi|254780313|r  113 -KFFKFDFLDLDSWEFIRQAIGG----NPDLV--LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK---  182 (227)
Q Consensus       113 -~~~~gDi~~~~~~~~i~~~l~~----~~DlV--lSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K---  182 (227)
                       .++.--|.-.+....|...+..    ..+-+  ..|...|.+.....-.-..++|......+-.-++...|..|.+   
T Consensus       100 DDYl~KPf~~~EL~aRi~a~lrR~~~~~~~~~~~~~~l~~d~~~~~v~~~~~~i~LT~~E~~LL~~L~~~~g~vvsr~~L  179 (229)
T PRK10161        100 DDYITKPFSPKELVARIKAVMRRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL  179 (229)
T ss_pred             CEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCEEEEEEEEEEEECCEEEECCHHHHHHHHHHHHCCCCCCCHHHH
T ss_conf             76520899989999999999712377776543267778986101599999999870689999999999779987979999


Q ss_pred             ---EECC-----C-CHHHHHHHHHHHCC
Q ss_conf             ---3059-----9-98999999986258
Q gi|254780313|r  183 ---TFQG-----G-TTNDILCLLKKHFQ  201 (227)
Q Consensus       183 ---~F~G-----~-~~~~l~~~l~~~F~  201 (227)
                         +|..     . .....+..+++.++
T Consensus       180 ~~~vwg~~~~~~~rtldv~I~rLRkKl~  207 (229)
T PRK10161        180 LNHVWGTNVYVEDRTVDVHIRRLRKALE  207 (229)
T ss_pred             HHHHCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf             9986399989884739999999999745


No 346
>PRK05866 short chain dehydrogenase; Provisional
Probab=32.55  E-value=39  Score=15.03  Aligned_cols=111  Identities=22%  Similarity=0.281  Sum_probs=59.2

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC--C----CCC----CCCEEEECCCCHHHHHHHHHHHCC---
Q ss_conf             796788850455306899999706878832786411213--3----346----981783011220799999997313---
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD--M----EPI----LGVKFFKFDFLDLDSWEFIRQAIG---  133 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~--~----~~i----~gv~~~~gDi~~~~~~~~i~~~l~---  133 (227)
                      .|.+||=-|++-|==...|.... ..|  .+|+.+|...  .    +.+    ..+..+..|+++.+..+.+.+...   
T Consensus        39 ~GKvaLITGassGIG~aiA~~la-~~G--a~Vvl~~R~~~~l~~~~~~i~~~g~~~~~~~~Dvtd~~~v~~~v~~~~~~~  115 (290)
T PRK05866         39 TGKRILLTGASSGIGEAAAEKFA-RRG--ATVVAVARRKDLLDAVADRITAAGGDAMAIPCDLSDLDAVDALVADVEERI  115 (290)
T ss_pred             CCCEEEECCCCCHHHHHHHHHHH-HCC--CEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf             99989990813099999999999-869--989999899999999999999649908999778898999999999999985


Q ss_pred             CCCCEEEECCCHHHCCC--CCC----HHHHHHHHHHHHHHH-HH----HCCC-CCCEEE
Q ss_conf             88748975320211022--210----157889899988987-64----1148-774699
Q gi|254780313|r  134 GNPDLVLSDMAYPTIGH--RKI----DHLRTMSLCEAATFF-AL----EMLN-IGGDFL  180 (227)
Q Consensus       134 ~~~DlVlSDmapn~SG~--~~~----D~~~~~~L~~~al~~-A~----~~Lk-~gG~fV  180 (227)
                      +..|+++.-.+....+.  ...    |-.+.++++...... +.    .+++ .+|..|
T Consensus       116 G~iDiLVNNAG~~~~~~~~~~~~~~~d~~~~~~vN~~g~~~l~~~~lp~M~~~~~G~IV  174 (290)
T PRK05866        116 GGVDILINNAGRSIRRPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMIERGDGHII  174 (290)
T ss_pred             CCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf             99888997576667874222157799999999998399999998750999966996499


No 347
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=32.31  E-value=39  Score=15.01  Aligned_cols=35  Identities=20%  Similarity=0.142  Sum_probs=20.7

Q ss_pred             HHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEC
Q ss_conf             98818447999999999864583137967888504
Q gi|254780313|r   42 AQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS   76 (227)
Q Consensus        42 Ak~~gyrsRaafKL~eId~kf~l~k~g~~VlDLGa   76 (227)
                      =+.+||...+|.-..|..+.+.-..+.-.+||+.-
T Consensus        25 L~~~g~~v~~a~~~~~a~~~~~~~~~DlvilDi~l   59 (239)
T PRK09468         25 LTEQGFQVRSAANAEQMDRLLTRESFHLMVLDLML   59 (239)
T ss_pred             HHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCC
T ss_conf             99889999998999999999975899899987899


No 348
>pfam08471 Ribonuc_red_2_N Class II vitamin B12-dependent ribonucleotide reductase. This domain is found to the N-terminus of the ribonucleotide reductase barrel domain (pfam02867). It occurs in bacterial class II ribonucleotide reductase proteins which depend upon coenzyme B12 (deoxyadenosylcobalamine).
Probab=32.00  E-value=23  Score=16.50  Aligned_cols=16  Identities=50%  Similarity=0.804  Sum_probs=12.6

Q ss_pred             CCCCHHHHHHHHHHCC
Q ss_conf             4553068999997068
Q gi|254780313|r   76 SSPGSWSQVAARITGS   91 (227)
Q Consensus        76 aaPGgWsQva~~~~~~   91 (227)
                      ..|-+|||+|++.+..
T Consensus        12 E~P~~WSq~A~~Ivaq   27 (86)
T pfam08471        12 EVPESWSQVASDIVAQ   27 (86)
T ss_pred             CCCCHHHHHHHHHHHH
T ss_conf             3683276768899999


No 349
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=31.73  E-value=40  Score=14.95  Aligned_cols=48  Identities=13%  Similarity=0.155  Sum_probs=18.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHH
Q ss_conf             2221015788989998898764114877469999305999899999998
Q gi|254780313|r  149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK  197 (227)
Q Consensus       149 G~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~  197 (227)
                      |....|-.-.-+++.+ +.++...-++|..|-+=--......++...+.
T Consensus       220 G~q~Rdf~yV~D~v~a-~~~~~~~~~~ge~yNiG~g~~~~~~~~~~~i~  267 (355)
T PRK10217        220 GQQIRDWLYVEDHARA-LYCVATTGKVGETYNIGGHNERKNLDVVETIC  267 (355)
T ss_pred             CCEEEEEEEHHHHHHH-HHHHHHCCCCCCEEEECCCCCCCHHHHHHHHH
T ss_conf             9828975858999999-99999669999979979999620799999999


No 350
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=31.67  E-value=40  Score=14.94  Aligned_cols=76  Identities=17%  Similarity=0.248  Sum_probs=46.4

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CCC-CCCCEEEECCCCHHHHHHHHHHHCC---
Q ss_conf             796788850455306899999706878832786411213---------334-6981783011220799999997313---
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------MEP-ILGVKFFKFDFLDLDSWEFIRQAIG---  133 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~~-i~gv~~~~gDi~~~~~~~~i~~~l~---  133 (227)
                      .|.++|=.|++-|==...+..+ ...|  ..|+.+|..+         ++. -..+.++++|+++++..+.+.+...   
T Consensus         5 ~gK~alITGgs~GIG~aia~~l-a~~G--~~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dl~~~~~~~~~~~~~~~~~   81 (253)
T PRK12826          5 MGRVALVTGAARGIGRAIAVRF-AADG--ADVIVVDICGQAAAATAELVAAAGGKARAYQVDVRDRAALKALVAAGVERF   81 (253)
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHCC--CEEEEEECCHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHH
T ss_conf             9988999489778999999999-9879--989999898899999999998509958999951799999999999999983


Q ss_pred             CCCCEEEECCCH
Q ss_conf             887489753202
Q gi|254780313|r  134 GNPDLVLSDMAY  145 (227)
Q Consensus       134 ~~~DlVlSDmap  145 (227)
                      +++|+++.-.+.
T Consensus        82 g~iD~lvnnAg~   93 (253)
T PRK12826         82 GRLDILVANAGI   93 (253)
T ss_pred             CCCCEEEECCCC
T ss_conf             998789989988


No 351
>PRK12744 short chain dehydrogenase; Provisional
Probab=31.61  E-value=40  Score=14.93  Aligned_cols=112  Identities=15%  Similarity=0.149  Sum_probs=60.9

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC------C----CCC----CCCEEEECCCCHHHHHHHHHHHC
Q ss_conf             796788850455306899999706878832786411213------3----346----98178301122079999999731
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD------M----EPI----LGVKFFKFDFLDLDSWEFIRQAI  132 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~------~----~~i----~gv~~~~gDi~~~~~~~~i~~~l  132 (227)
                      .|.++|=-|++-| -=..+++.....|  ..|+.+|+..      .    +.+    ..+.++++|+++++..+.+.+..
T Consensus         7 ~gKvalVTGgs~G-IG~aiA~~la~~G--a~vv~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~   83 (257)
T PRK12744          7 KGKVVLIAGGAKN-LGGLIARDLAAQG--AKAVAIHYNSAATKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDA   83 (257)
T ss_pred             CCCEEEEECCCCH-HHHHHHHHHHHCC--CEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHH
T ss_conf             9998999288758-9999999999879--989999378743689999999999973992899976889999999999999


Q ss_pred             C---CCCCEEEECCCHHHCC-CCCCH---HHHHHHHHHHH----HHHHHHCCCCCCEEEE
Q ss_conf             3---8874897532021102-22101---57889899988----9876411487746999
Q gi|254780313|r  133 G---GNPDLVLSDMAYPTIG-HRKID---HLRTMSLCEAA----TFFALEMLNIGGDFLV  181 (227)
Q Consensus       133 ~---~~~DlVlSDmapn~SG-~~~~D---~~~~~~L~~~a----l~~A~~~Lk~gG~fV~  181 (227)
                      .   ++.|+++.-.+....+ ..+++   -.+.++++...    +.-+...++.+|..|.
T Consensus        84 ~~~~G~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~m~~~G~ii~  143 (257)
T PRK12744         84 KAAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVT  143 (257)
T ss_pred             HHHCCCCCEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf             998099889997664456772333228888889888876699999999998741894999


No 352
>COG5136 U1 snRNP-specific protein C [RNA processing and modification]
Probab=31.02  E-value=35  Score=15.31  Aligned_cols=44  Identities=18%  Similarity=0.154  Sum_probs=27.4

Q ss_pred             CCCHHHHHHHHHCCHHHHHHHHHHHHHH----------------CCCCCCCCEEEEEECCCC
Q ss_conf             0899999998818447999999999864----------------583137967888504553
Q gi|254780313|r   34 INDPYVQRAQLEGWRARSAYKLLQINEK----------------HQILQSNRRIVDLGSSPG   79 (227)
Q Consensus        34 ~~D~y~~~Ak~~gyrsRaafKL~eId~k----------------f~l~k~g~~VlDLGaaPG   79 (227)
                      +.|+|.++|.  .-..-++-+|.+|-..                |.-+.|+++++-|+|.|-
T Consensus        34 ~~dYY~~~a~--di~~e~~~~lr~i~~~G~kv~c~gnks~~~p~~~a~~p~d~~~nL~~p~p   93 (188)
T COG5136          34 RKDYYMEMAE--DIAAEMASILRDIKTAGEKVECEGNKSTSYPPFPAFPPGDFYLNLALPEP   93 (188)
T ss_pred             HHHHHHHHHH--HHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCHHHHCCCCCC
T ss_conf             9999999999--99999999999886157557863677667787566896222220037999


No 353
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=30.82  E-value=42  Score=14.85  Aligned_cols=80  Identities=14%  Similarity=0.176  Sum_probs=49.5

Q ss_pred             HCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCC-------C-CCCCEEEECCCCHHHHHHHHHHHC
Q ss_conf             45831379678885045530689999970687883278641121333-------4-698178301122079999999731
Q gi|254780313|r   61 KHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME-------P-ILGVKFFKFDFLDLDSWEFIRQAI  132 (227)
Q Consensus        61 kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~-------~-i~gv~~~~gDi~~~~~~~~i~~~l  132 (227)
                      .|+|  .|.++|=.|++-|==...|.. ....|  ..|+++|+....       . -..+..+++|+++++..+.+.+..
T Consensus         5 ~~~L--~gK~alITGas~GIG~aia~~-la~~G--a~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~   79 (253)
T PRK08993          5 AFSL--EGKVAVVTGCDTGLGQGMALG-LAEAG--CDIVGINIVEPTETIEQVTALGRRFLSLTADLRKIDGIPALLERA   79 (253)
T ss_pred             CCCC--CCCEEEEECCCCHHHHHHHHH-HHHCC--CEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHH
T ss_conf             6399--999899938876899999999-99879--999995587749999999965995799980379999999999999


Q ss_pred             C---CCCCEEEECCCH
Q ss_conf             3---887489753202
Q gi|254780313|r  133 G---GNPDLVLSDMAY  145 (227)
Q Consensus       133 ~---~~~DlVlSDmap  145 (227)
                      .   +++|+++.-.+.
T Consensus        80 ~~~~G~iDilVnnAG~   95 (253)
T PRK08993         80 VAEFGHIDILVNNAGL   95 (253)
T ss_pred             HHHHCCCEEEEECCCC
T ss_conf             9984997299989977


No 354
>PRK10508 hypothetical protein; Provisional
Probab=30.72  E-value=40  Score=14.95  Aligned_cols=33  Identities=24%  Similarity=0.240  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHH
Q ss_conf             999999999864583137967888504553068
Q gi|254780313|r   50 RSAYKLLQINEKHQILQSNRRIVDLGSSPGSWS   82 (227)
Q Consensus        50 RaafKL~eId~kf~l~k~g~~VlDLGaaPGgWs   82 (227)
                      -|.||..|.-.--.-+-||..=|-||-|||+=-
T Consensus        86 ysP~kVAE~f~~L~~L~PgRiDLGlGRapG~~~  118 (333)
T PRK10508         86 HSPLVIAEQFGTLNTLYPGRIDLGLGRAPGSDQ  118 (333)
T ss_pred             CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCH
T ss_conf             988999999999986379877998357899861


No 355
>KOG2775 consensus
Probab=30.37  E-value=18  Score=17.20  Aligned_cols=47  Identities=17%  Similarity=0.294  Sum_probs=30.3

Q ss_pred             CCCCHHHHHHHHCCCHH--HHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEC
Q ss_conf             64007999996408999--99998818447999999999864583137967888504
Q gi|254780313|r   22 CQGSSRDWLNRHINDPY--VQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS   76 (227)
Q Consensus        22 ~~~ss~~W~~r~~~D~y--~~~Ak~~gyrsRaafKL~eId~kf~l~k~g~~VlDLGa   76 (227)
                      .+.+.++-|.|...|.|  +++|-+.+-+.|-+-+        .+++||++.+|+|-
T Consensus        69 ~tdeekr~ler~~~~i~~d~rraAE~HRqvR~yv~--------s~ikPGmtm~ei~e  117 (397)
T KOG2775          69 TTDEEKRELERTESDIYQDLRRAAEAHRQVRKYVQ--------SIIKPGMTMIEICE  117 (397)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHCCCCCCHHHHHH
T ss_conf             33388888875304878889999999999999999--------86167642999999


No 356
>COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=30.26  E-value=35  Score=15.34  Aligned_cols=35  Identities=11%  Similarity=0.234  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHH
Q ss_conf             99999999986458313796788850455306899
Q gi|254780313|r   50 RSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV   84 (227)
Q Consensus        50 RaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQv   84 (227)
                      |--+=+.|+..+.++--+.-.-+-.+++||+||-+
T Consensus        40 ~l~~~i~~ll~~~~~~~~dld~Iav~~GPGSFTGl   74 (220)
T COG1214          40 RLMPMIDELLKEAGLSLQDLDAIAVAKGPGSFTGL   74 (220)
T ss_pred             HHHHHHHHHHHHCCCCHHHCCEEEEECCCCCCHHH
T ss_conf             99999999998759997784889993089742238


No 357
>PRK10201 G/U mismatch-specific DNA glycosylase; Provisional
Probab=30.13  E-value=39  Score=15.03  Aligned_cols=23  Identities=35%  Similarity=0.382  Sum_probs=19.8

Q ss_pred             CCCCCCCEEEEEECCCCHHHHHH
Q ss_conf             83137967888504553068999
Q gi|254780313|r   63 QILQSNRRIVDLGSSPGSWSQVA   85 (227)
Q Consensus        63 ~l~k~g~~VlDLGaaPGgWsQva   85 (227)
                      +++.|+..||=+|-.||-||-..
T Consensus         4 D~l~p~L~vlF~GiNPgl~Sa~~   26 (168)
T PRK10201          4 DILAPGLRVVFCGINPGLSSAGT   26 (168)
T ss_pred             CCCCCCCEEEEEEECCCHHHHHC
T ss_conf             54589984899974978888853


No 358
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=30.13  E-value=40  Score=14.98  Aligned_cols=38  Identities=26%  Similarity=0.467  Sum_probs=29.7

Q ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEE-EECCCC
Q ss_conf             999998818447999999999864583137967888-504553
Q gi|254780313|r   38 YVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVD-LGSSPG   79 (227)
Q Consensus        38 y~~~Ak~~gyrsRaafKL~eId~kf~l~k~g~~VlD-LGaaPG   79 (227)
                      -+-.++-+||  |-|--|+.+-+||++  |--+++| =||.||
T Consensus        75 nfGm~~PeGY--RKA~Rlm~lAekf~~--PvitfIDTpGA~pg  113 (256)
T PRK12319         75 NFGQPHPEGY--RKALRLMKQAEKFGR--PVVTFINTAGAYPG  113 (256)
T ss_pred             CCCCCCHHHH--HHHHHHHHHHHHHCC--CEEEEECCCCCCCC
T ss_conf             6999981799--999999999998099--87999607986788


No 359
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=30.01  E-value=43  Score=14.77  Aligned_cols=35  Identities=23%  Similarity=0.305  Sum_probs=23.3

Q ss_pred             EEECCCCHHHHHHHHHH-------HCCCCCCEEEECCCHHHC
Q ss_conf             83011220799999997-------313887489753202110
Q gi|254780313|r  114 FFKFDFLDLDSWEFIRQ-------AIGGNPDLVLSDMAYPTI  148 (227)
Q Consensus       114 ~~~gDi~~~~~~~~i~~-------~l~~~~DlVlSDmapn~S  148 (227)
                      -+-||..+.++.+..++       .++-..|+|.|||-|+..
T Consensus       422 Q~iGdls~~~t~~~~~ea~~~~~~~~~~~pd~i~cDlHP~y~  463 (750)
T COG0068         422 QHIGDLSNLETLEFFREALRHFLKIYDFEPDYIVCDLHPNYN  463 (750)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf             012750024689999999999998716897648872576521


No 360
>cd01269 PLX Pollux (PLX) Phosphotyrosine-binding (PTB) domain. PLX is calmodulin-binding protein containing a TBC domain, which is conserved from yeast to man, but it only has an N-terminal PTB domain in mammals. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=29.79  E-value=35  Score=15.33  Aligned_cols=53  Identities=21%  Similarity=0.442  Sum_probs=37.0

Q ss_pred             ECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCC-CEEEEEEECCCCH---HHHHHHHHHHCCE
Q ss_conf             532021102221015788989998898764114877-4699993059998---9999999862584
Q gi|254780313|r  141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIG-GDFLVKTFQGGTT---NDILCLLKKHFQK  202 (227)
Q Consensus       141 SDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~g-G~fV~K~F~G~~~---~~l~~~l~~~F~~  202 (227)
                      .|++.-.-|++..||...         ++.+...+| -.|||=+|+...+   ++++..++..|..
T Consensus        71 kdIs~C~QGik~~dHFGf---------iCRe~~~~g~~~yvcYVFkC~sesvadeim~tlkQAF~~  127 (129)
T cd01269          71 KDIASCSHGIKHLDHFGF---------ICRELNEPGLDGYICYVFKCASEHLCDDIMAAIAQAFDT  127 (129)
T ss_pred             HHHHHHHHCCCCCCCEEE---------EECCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHH
T ss_conf             066687605766501447---------861477778764799999828588999999999998652


No 361
>PRK06346 consensus
Probab=29.61  E-value=44  Score=14.72  Aligned_cols=112  Identities=11%  Similarity=0.120  Sum_probs=58.8

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC--CC-------CC-CCCEEEECCCCHHHHHHHHHHHCC---
Q ss_conf             796788850455306899999706878832786411213--33-------46-981783011220799999997313---
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD--ME-------PI-LGVKFFKFDFLDLDSWEFIRQAIG---  133 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~--~~-------~i-~gv~~~~gDi~~~~~~~~i~~~l~---  133 (227)
                      .|.+||=-|++-| -=.-+++.....|-  .|+-+|..+  .+       .. ..+.++++|+++++..+.+.+..-   
T Consensus         4 ~gKv~lITGgs~G-IG~a~a~~la~~Ga--~V~i~~r~~e~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~i~~~~~~f   80 (251)
T PRK06346          4 KGKVAIVTGAASG-MGKSIAELFAKEGA--KVVVADLNLERAQKVVEEITSNGGTAIAVVANVTKQEDIENMVDTAVDTY   80 (251)
T ss_pred             CCCEEEEECCCCH-HHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf             9988999475788-99999999998799--89999798999999999999639908999778898999999999999982


Q ss_pred             CCCCEEEECCCH--HHCCCCCCHHH---HHHHHHHHHH----HHHHHCC--CCCCEEEE
Q ss_conf             887489753202--11022210157---8898999889----8764114--87746999
Q gi|254780313|r  134 GNPDLVLSDMAY--PTIGHRKIDHL---RTMSLCEAAT----FFALEML--NIGGDFLV  181 (227)
Q Consensus       134 ~~~DlVlSDmap--n~SG~~~~D~~---~~~~L~~~al----~~A~~~L--k~gG~fV~  181 (227)
                      ++.|+++.-.+.  +..-..+.|..   +.++++....    ..+...+  +.+|..|.
T Consensus        81 g~iDiLVnNAgi~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IIn  139 (251)
T PRK06346         81 GTLDILVNNAGIMDNFVPVGELTDELWDKVFAVNTTGVMRATRKALPIFEEKGSGVIVN  139 (251)
T ss_pred             CCCCEEEECCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf             99979998998899998711289999999999970999999999999999859954999


No 362
>KOG1371 consensus
Probab=29.54  E-value=44  Score=14.72  Aligned_cols=71  Identities=20%  Similarity=0.150  Sum_probs=39.1

Q ss_pred             CEEEEEECC-CCHHHHHHHHHHCCCCCCEEEEEECCC---------CCC----CCCCCEEEECCCCHHHHHHHHHHHCCC
Q ss_conf             678885045-530689999970687883278641121---------333----469817830112207999999973138
Q gi|254780313|r   69 RRIVDLGSS-PGSWSQVAARITGSNANNTRVVAIDIL---------DME----PILGVKFFKFDFLDLDSWEFIRQAIGG  134 (227)
Q Consensus        69 ~~VlDLGaa-PGgWsQva~~~~~~~~~~~~VigVDl~---------~~~----~i~gv~~~~gDi~~~~~~~~i~~~l~~  134 (227)
                      .+||=.|+| ==||--+ .++..   .+-.|+.||=+         +.+    +-.++.|+++|+.|....+++.+..  
T Consensus         3 ~~VLVtGgaGyiGsht~-l~L~~---~gy~v~~vDNl~n~~~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~~--   76 (343)
T KOG1371           3 KHVLVTGGAGYIGSHTV-LALLK---RGYGVVIVDNLNNSYLESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFSEV--   76 (343)
T ss_pred             CEEEEECCCCCEEHHHH-HHHHH---CCCCEEEEECCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHC--
T ss_conf             37999668763105999-99986---7981799824332124677889986278774389981566899999998633--


Q ss_pred             CCCEEEECCCH
Q ss_conf             87489753202
Q gi|254780313|r  135 NPDLVLSDMAY  145 (227)
Q Consensus       135 ~~DlVlSDmap  145 (227)
                      ++|-|+.=.|-
T Consensus        77 ~fd~V~Hfa~~   87 (343)
T KOG1371          77 KFDAVMHFAAL   87 (343)
T ss_pred             CCCEEEEEHHH
T ss_conf             88657762444


No 363
>PRK06500 short chain dehydrogenase; Provisional
Probab=29.45  E-value=44  Score=14.71  Aligned_cols=112  Identities=14%  Similarity=0.134  Sum_probs=60.3

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC--CC----CC-CCCEEEECCCCHHHHHHHHHHHCC---CCC
Q ss_conf             796788850455306899999706878832786411213--33----46-981783011220799999997313---887
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD--ME----PI-LGVKFFKFDFLDLDSWEFIRQAIG---GNP  136 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~--~~----~i-~gv~~~~gDi~~~~~~~~i~~~l~---~~~  136 (227)
                      .|.+||=.|++.|==...|.... ..|.  .|+-+|..+  .+    .+ ..+.++++|+.+.+..+.+.+...   ++.
T Consensus         5 ~gK~~lITGas~GIG~aiA~~la-~~Ga--~V~i~~r~~~~l~~~~~~l~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~i   81 (249)
T PRK06500          5 QGKTALITGGTSGIGLETARQFA-AEGA--RVAITGRDAATLEAARAELGEDALVIRNDAGSVAAQRALAQALAEAGGRL   81 (249)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHH-HCCC--EEEEEECCHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHCCCC
T ss_conf             99889993768789999999999-8799--99999699899999999858975999951799999999999999976999


Q ss_pred             CEEEECCCHHHCC-CCCC---HHHHHHHHHHHH----HHHHHHCCCCCCEEEE
Q ss_conf             4897532021102-2210---157889899988----9876411487746999
Q gi|254780313|r  137 DLVLSDMAYPTIG-HRKI---DHLRTMSLCEAA----TFFALEMLNIGGDFLV  181 (227)
Q Consensus       137 DlVlSDmapn~SG-~~~~---D~~~~~~L~~~a----l~~A~~~Lk~gG~fV~  181 (227)
                      |+++.-.+....+ ..+.   |-...++++...    +..+...++.+|..|.
T Consensus        82 DiLvnnAG~~~~~~~~~~~~e~w~~~~~vNl~~~f~~~~~~~p~m~~~g~iI~  134 (249)
T PRK06500         82 DAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLNNPASIVL  134 (249)
T ss_pred             CEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf             89998998789999166999999999998645699999999998622981899


No 364
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=29.41  E-value=44  Score=14.70  Aligned_cols=115  Identities=15%  Similarity=0.087  Sum_probs=59.4

Q ss_pred             CCCEEEEEECCCC-HHHHHHHHHHCCCCCCEEEEEECCCC---------CCCCCCCEEEECCCCHHHHHHHHHHHCC---
Q ss_conf             7967888504553-06899999706878832786411213---------3346981783011220799999997313---
Q gi|254780313|r   67 SNRRIVDLGSSPG-SWSQVAARITGSNANNTRVVAIDILD---------MEPILGVKFFKFDFLDLDSWEFIRQAIG---  133 (227)
Q Consensus        67 ~g~~VlDLGaaPG-gWsQva~~~~~~~~~~~~VigVDl~~---------~~~i~gv~~~~gDi~~~~~~~~i~~~l~---  133 (227)
                      .|.++|=-|++.| |--.-+++.....|-+  |+-.+..+         .........+++|+.+++..+.+.....   
T Consensus         5 ~GK~alVTGaa~~~GiG~aiA~~la~~GA~--V~i~~~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~   82 (262)
T PRK07984          5 SGKRILVTGVASKLSIAYGIAQAMHREGAE--LAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDAMFAELGKVW   82 (262)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf             998799989999725999999999987999--999827778999999999754982899888999999999999999983


Q ss_pred             CCCCEEEECCCHHHCCCCCCHH---------HHHHHHHHH----HHHHHHHCCCCCCEEEEEE
Q ss_conf             8874897532021102221015---------788989998----8987641148774699993
Q gi|254780313|r  134 GNPDLVLSDMAYPTIGHRKIDH---------LRTMSLCEA----ATFFALEMLNIGGDFLVKT  183 (227)
Q Consensus       134 ~~~DlVlSDmapn~SG~~~~D~---------~~~~~L~~~----al~~A~~~Lk~gG~fV~K~  183 (227)
                      +++|.++.-.+.......+.|+         ....+++..    ....+...+++||..|.=.
T Consensus        83 g~iD~lVnnag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~is  145 (262)
T PRK07984         83 PKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLS  145 (262)
T ss_pred             CCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             877889995022763224631788860999999998878999999998887514797599995


No 365
>PRK06139 short chain dehydrogenase; Provisional
Probab=29.10  E-value=45  Score=14.67  Aligned_cols=144  Identities=17%  Similarity=0.154  Sum_probs=72.7

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC--CC----CC----CCCEEEECCCCHHHHHHHHHHHC---C
Q ss_conf             796788850455306899999706878832786411213--33----46----98178301122079999999731---3
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD--ME----PI----LGVKFFKFDFLDLDSWEFIRQAI---G  133 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~--~~----~i----~gv~~~~gDi~~~~~~~~i~~~l---~  133 (227)
                      .|.+||=-|++-|== .-+++.....|.  +|+.+|...  .+    .+    ..+..+..|+++.+..+.+.+..   -
T Consensus         5 ~gKvvlITGASsGIG-~aiA~~~A~~Ga--~Vvl~~R~~~~L~~~a~e~~~~G~~~~~v~~DVsd~~~v~~~~~~~~~~~   81 (324)
T PRK06139          5 HGAVVVITGASSGIG-RATAEAFARRGA--RLVLAARDEEALFEVAEECRALGAEVLVVPTDVTHADQVQALATQAASFL   81 (324)
T ss_pred             CCCEEEEECHHHHHH-HHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf             997799938254999-999999998799--89999899999999999999549948999766788578999999999974


Q ss_pred             CCCCEEEECCCHHHCCCC-CC---HHHHHHHHHHHHH----HHHHHCCCC--CCEEEEE--E--E-----CC--------
Q ss_conf             887489753202110222-10---1578898999889----876411487--7469999--3--0-----59--------
Q gi|254780313|r  134 GNPDLVLSDMAYPTIGHR-KI---DHLRTMSLCEAAT----FFALEMLNI--GGDFLVK--T--F-----QG--------  186 (227)
Q Consensus       134 ~~~DlVlSDmapn~SG~~-~~---D~~~~~~L~~~al----~~A~~~Lk~--gG~fV~K--~--F-----~G--------  186 (227)
                      +++|+++.-.+....|.- ++   |..+.++.+....    ..++..+++  .|.+|-=  +  +     ++        
T Consensus        82 G~IDiLVNNAGi~~~g~~~e~~~e~~~~vi~vNl~G~~~~~~aalp~M~~~g~G~IINisS~ag~~~~P~~saY~ASK~A  161 (324)
T PRK06139         82 GRIDVWFNNVGVGAVGRFEETPLEAHEQVIQTNLIGYLRDAHAALPIFKAQGHGIFINMISLGGFAAQPYAAAYSASKFG  161 (324)
T ss_pred             CCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCHHHHHHHH
T ss_conf             99878864575577775355999999999999869999999999999986599189997363241369998419899999


Q ss_pred             --CCHHHHHHHHHHH-CCEEEEECCCCCCC
Q ss_conf             --9989999999862-58469976866575
Q gi|254780313|r  187 --GTTNDILCLLKKH-FQKVIHVKPVASRA  213 (227)
Q Consensus       187 --~~~~~l~~~l~~~-F~~V~~~KP~aSR~  213 (227)
                        .-++.|...|..+ =-+|..+.|-.-+.
T Consensus       162 v~gftesLr~EL~~~~gI~Vt~V~Pg~v~T  191 (324)
T PRK06139        162 LRGFSEALRAELTDFPDIHVCDVYPAFVDT  191 (324)
T ss_pred             HHHHHHHHHHHHCCCCCCEEEEEECCCCCC
T ss_conf             999999999983799891899985799588


No 366
>PRK06101 short chain dehydrogenase; Provisional
Probab=28.91  E-value=45  Score=14.65  Aligned_cols=109  Identities=13%  Similarity=0.133  Sum_probs=57.8

Q ss_pred             EEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC--C----CCCCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf             788850455306899999706878832786411213--3----3469817830112207999999973138874897532
Q gi|254780313|r   70 RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD--M----EPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDM  143 (227)
Q Consensus        70 ~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~--~----~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDm  143 (227)
                      +||=.|++-|==...|.+.. ..|  .+|+.+|..+  .    +...++..++.|+++.+........+....|+++.-.
T Consensus         3 tvlITGassGIG~a~A~~la-~~G--~~Vi~~~R~~~~l~~~~~~~~~~~~~~~Dvtd~~~~~~~~~~~~~~~d~~i~na   79 (241)
T PRK06101          3 SVLITGATSGIGKQLALDYA-KAG--WKVIACGRNEAVLDELHDQSSNIFTLAFDVTDYEETKAALSQLPFIPELWIFNA   79 (241)
T ss_pred             EEEEECCCHHHHHHHHHHHH-HCC--CEEEEEECCHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHCCCCCEEEECC
T ss_conf             89992240499999999999-879--989999899999999997328804898522679999999997187777899988


Q ss_pred             CHH-HCCCCCCHH---HHHHHHHHHH----HHHHHHCCCCCCEEEE
Q ss_conf             021-102221015---7889899988----9876411487746999
Q gi|254780313|r  144 AYP-TIGHRKIDH---LRTMSLCEAA----TFFALEMLNIGGDFLV  181 (227)
Q Consensus       144 apn-~SG~~~~D~---~~~~~L~~~a----l~~A~~~Lk~gG~fV~  181 (227)
                      +.. .......|.   .+.++++...    +..+...+++||..|.
T Consensus        80 G~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~m~~~~~iv~  125 (241)
T PRK06101         80 GDCEYMDDGIVDAQLMARVFNVNVVGVANCIEACQPHFQRGHRVVI  125 (241)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf             6667687344899999999999889999999999999873895057


No 367
>PRK05717 oxidoreductase; Validated
Probab=28.74  E-value=45  Score=14.63  Aligned_cols=111  Identities=14%  Similarity=0.090  Sum_probs=58.5

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC--C----CCC-CCCEEEECCCCHHHHHHHH----HHHCCCC
Q ss_conf             796788850455306899999706878832786411213--3----346-9817830112207999999----9731388
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD--M----EPI-LGVKFFKFDFLDLDSWEFI----RQAIGGN  135 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~--~----~~i-~gv~~~~gDi~~~~~~~~i----~~~l~~~  135 (227)
                      .|.++|=-|++-|==.. +++.....|.  .|+-.|...  .    +.+ ..+.++++|+++++..+..    .+.+ ++
T Consensus         9 ~GKvalITG~s~GIG~a-ia~~la~~Ga--~V~i~~~~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~i~~~~~~~-G~   84 (255)
T PRK05717          9 NGRVALVTGAARGIGLG-IAAWLIAEGW--QVVLADLDRERGAKVAKALGENAWFIAMDVADEAQVAAGVAEVLGQF-GR   84 (255)
T ss_pred             CCCEEEEECCCCHHHHH-HHHHHHHCCC--EEEEEECCHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHH-CC
T ss_conf             99889995878889999-9999998799--89999698899999999848975899930799999999999999982-99


Q ss_pred             CCEEEECCCHHH---CCCCCCH---HHHHHHHHHHHH----HHHHHCC-CCCCEEEE
Q ss_conf             748975320211---0222101---578898999889----8764114-87746999
Q gi|254780313|r  136 PDLVLSDMAYPT---IGHRKID---HLRTMSLCEAAT----FFALEML-NIGGDFLV  181 (227)
Q Consensus       136 ~DlVlSDmapn~---SG~~~~D---~~~~~~L~~~al----~~A~~~L-k~gG~fV~  181 (227)
                      .|++++-.+...   .-..+.+   -...++++....    ..+...| ..+|..|.
T Consensus        85 id~lvnNAg~~~~~~~~l~~~~~~~w~~~~~vNl~g~f~~~k~~~~~m~~~~G~IIn  141 (255)
T PRK05717         85 LDALVCNAAIANPHNTTLESLSLAQWNRVLAVNLGGPMLLAKHCAPYLRAHNGAIVN  141 (255)
T ss_pred             CCEEEECCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCEEE
T ss_conf             989998773057899983559999999999986042657766431988747998699


No 368
>PRK08589 short chain dehydrogenase; Validated
Probab=28.15  E-value=46  Score=14.56  Aligned_cols=112  Identities=22%  Similarity=0.278  Sum_probs=60.4

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC-----CC----CCCCEEEECCCCHHHHHHHHHHHCC---C
Q ss_conf             7967888504553068999997068788327864112133-----34----6981783011220799999997313---8
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM-----EP----ILGVKFFKFDFLDLDSWEFIRQAIG---G  134 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~-----~~----i~gv~~~~gDi~~~~~~~~i~~~l~---~  134 (227)
                      .|.++|=-|++-|== .-+++.....|  .+|+..|+.+-     +.    -..+.+++.|+++++..+.+.+...   +
T Consensus         5 ~gKvalVTGas~GIG-~aiA~~la~~G--a~Vv~~d~~~~~~~~~~~i~~~g~~~~~~~~Dvsd~~~v~~~v~~~~~~~G   81 (272)
T PRK08589          5 ENKVAVITGASTGIG-QASAIALAQEG--AYVLAVDIAEAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASDIKEQFG   81 (272)
T ss_pred             CCCEEEEECCCCHHH-HHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHC
T ss_conf             979899978256999-99999999869--999998382789999999995599489999607999999999999999829


Q ss_pred             CCCEEEECCCH-HHCC-CCCCHH---HHHHHHHHHHHHH----HHH-CCCCCCEEEE
Q ss_conf             87489753202-1102-221015---7889899988987----641-1487746999
Q gi|254780313|r  135 NPDLVLSDMAY-PTIG-HRKIDH---LRTMSLCEAATFF----ALE-MLNIGGDFLV  181 (227)
Q Consensus       135 ~~DlVlSDmap-n~SG-~~~~D~---~~~~~L~~~al~~----A~~-~Lk~gG~fV~  181 (227)
                      +.|+++.-.+. +..| ..+.+.   .+.++++.....+    +.. +.+.||..|.
T Consensus        82 ~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~f~~~~~~~p~m~~~gG~IVn  138 (272)
T PRK08589         82 HIDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQGGSIIN  138 (272)
T ss_pred             CCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf             987899898667888871009999999999998299999999999999975990799


No 369
>TIGR03120 one_C_mch methenyltetrahydromethanopterin cyclohydrolase. Members of this protein family are the enzyme methenyltetrahydromethanopterin cyclohydrolase, a key enzyme for tetrahydromethanopterin (H4MPT)-linked C1 transfer metabolism.
Probab=27.86  E-value=47  Score=14.53  Aligned_cols=35  Identities=26%  Similarity=0.536  Sum_probs=22.8

Q ss_pred             HHHHHHHCCC----CCCCCEEEEEE-CCCCHHHH--HHHHHH
Q ss_conf             9999864583----13796788850-45530689--999970
Q gi|254780313|r   55 LLQINEKHQI----LQSNRRIVDLG-SSPGSWSQ--VAARIT   89 (227)
Q Consensus        55 L~eId~kf~l----~k~g~~VlDLG-aaPGgWsQ--va~~~~   89 (227)
                      |++--+.+++    +.+|-+|+|+| .+||||--  ..++.+
T Consensus        13 li~~aeeL~i~v~~l~nGatviD~Gv~~~Gs~eAG~l~aeIc   54 (312)
T TIGR03120        13 MIRNAEKLRVEVAKLENGATVIDCGVNVPGSLEAGLLFAEVC   54 (312)
T ss_pred             HHHHHHHHCCEEEECCCCCEEEECCCCCCCHHHHHHHHHHHH
T ss_conf             984699719279984899789974767887189999999998


No 370
>PRK13774 formimidoylglutamase; Provisional
Probab=27.54  E-value=47  Score=14.50  Aligned_cols=10  Identities=30%  Similarity=0.567  Sum_probs=4.5

Q ss_pred             CCCEEEEEEC
Q ss_conf             7967888504
Q gi|254780313|r   67 SNRRIVDLGS   76 (227)
Q Consensus        67 ~g~~VlDLGa   76 (227)
                      +...++|+|-
T Consensus        85 ~~~~i~D~Gd   94 (311)
T PRK13774         85 QCETLVDYGN   94 (311)
T ss_pred             CCCEEEECCC
T ss_conf             6775565787


No 371
>pfam02254 TrkA_N TrkA-N domain. This domain is found in a wide variety of proteins. These protein include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD.
Probab=27.40  E-value=48  Score=14.48  Aligned_cols=88  Identities=20%  Similarity=0.112  Sum_probs=52.7

Q ss_pred             CCHHHHHHHHHHCCCCCCEEEEEECCCC--CCC--CCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCC
Q ss_conf             5306899999706878832786411213--334--698178301122079999999731388748975320211022210
Q gi|254780313|r   78 PGSWSQVAARITGSNANNTRVVAIDILD--MEP--ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKI  153 (227)
Q Consensus        78 PGgWsQva~~~~~~~~~~~~VigVDl~~--~~~--i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~  153 (227)
                      =|-..+.+++.....+   .|+.||..+  ++.  -.|...+.||.+++++....   --.++|.|++.+     +    
T Consensus         6 ~g~~G~~la~~L~~~~---~v~vId~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a---~i~~a~~vi~~~-----~----   70 (115)
T pfam02254         6 YGRVGRSLAEELREGG---PVVVIDKDPERVEELREEGVPVVVGDATDEEVLEEA---GIEDADAVVAAT-----G----   70 (115)
T ss_pred             CCHHHHHHHHHHHHCC---CEEEEECCHHHHHHHHHCCCEEEEEECCCHHHHHHH---CCCCCCEEEEEC-----C----
T ss_conf             8889999999998089---999999987998778866986999956886678761---920287999962-----9----


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEC
Q ss_conf             15788989998898764114877469999305
Q gi|254780313|r  154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ  185 (227)
Q Consensus       154 D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~  185 (227)
                      |....+.++..     .+-+.+....++++-.
T Consensus        71 ~d~~n~~~~~~-----~r~~~~~~~iiar~~~   97 (115)
T pfam02254        71 DDEANILIVLL-----ARELNPAKKIIARAND   97 (115)
T ss_pred             CHHHHHHHHHH-----HHHHCCCCEEEEEECC
T ss_conf             84999999999-----9997899809999878


No 372
>PRK07479 consensus
Probab=27.21  E-value=48  Score=14.46  Aligned_cols=112  Identities=15%  Similarity=0.104  Sum_probs=59.6

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CC-CCCCCEEEECCCCHHHHHHHHHHHCC---
Q ss_conf             796788850455306899999706878832786411213---------33-46981783011220799999997313---
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------ME-PILGVKFFKFDFLDLDSWEFIRQAIG---  133 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~-~i~gv~~~~gDi~~~~~~~~i~~~l~---  133 (227)
                      .|.++|=-|++-|==...|.. ....|.  .|+-.|..+         +. .-..+.++++|+++++..+.+.+...   
T Consensus         4 ~gK~alITGgs~GIG~a~a~~-la~~G~--~V~i~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~~~~~~~~~~~~~   80 (252)
T PRK07479          4 SGKVAIVTGAGSGFGEGIAKR-FAREGA--KVVVADLNAAAAERVASEIADAGGNAIAVAADVSRGADVEALVEAALEAF   80 (252)
T ss_pred             CCCEEEEECCCCHHHHHHHHH-HHHCCC--EEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf             998899938876899999999-998799--99999798999999999998539978999925899999999999999981


Q ss_pred             CCCCEEEECCCHH-HCC-CCCCHH---HHHHHHHHHHH----HHHHHCCC--CCCEEEE
Q ss_conf             8874897532021-102-221015---78898999889----87641148--7746999
Q gi|254780313|r  134 GNPDLVLSDMAYP-TIG-HRKIDH---LRTMSLCEAAT----FFALEMLN--IGGDFLV  181 (227)
Q Consensus       134 ~~~DlVlSDmapn-~SG-~~~~D~---~~~~~L~~~al----~~A~~~Lk--~gG~fV~  181 (227)
                      ++.|+++.-.+.. ..+ ..+.+.   ...++++....    ..+...++  .+|.+|.
T Consensus        81 G~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~~~G~Iv~  139 (252)
T PRK07479         81 GRVDIVVNNAGTTHRNKPMLDVTEAEFDRVYAVNVKSIYLSTRHFVPHFRAQGGGVIIN  139 (252)
T ss_pred             CCCCEEEECCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf             99859998997668998827699999999999986310565444049898679972999


No 373
>PRK07326 short chain dehydrogenase; Provisional
Probab=27.09  E-value=48  Score=14.45  Aligned_cols=111  Identities=15%  Similarity=0.174  Sum_probs=58.9

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCC--CC----CCC--CCCEEEECCCCHHHHHHHHH----HHCCC
Q ss_conf             79678885045530689999970687883278641121--33----346--98178301122079999999----73138
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL--DM----EPI--LGVKFFKFDFLDLDSWEFIR----QAIGG  134 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~--~~----~~i--~gv~~~~gDi~~~~~~~~i~----~~l~~  134 (227)
                      +|.++|=-|++-|== .-+++.....|.  +|+.+|..  ..    +.+  .++..+++|+++.+..+.+.    +.+ +
T Consensus         4 ~GKvalITGas~GIG-~aiA~~la~~Ga--~V~i~~r~~~~l~~~~~~l~~~~~~~~~~Dv~d~~~v~~~v~~~~~~~-G   79 (235)
T PRK07326          4 NGKAALVTGGSKGIG-FAVAEALAAAGY--RVAICARDESELEAAAQELGKRNVLGLACDVRDEADVRQAVDAHVEAF-G   79 (235)
T ss_pred             CCCEEEEECCCCHHH-HHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHC-C
T ss_conf             998999938267999-999999998799--999998988999999998423986999963899999999999999982-9


Q ss_pred             CCCEEEECCCHHHCCC-CCC---HHHHHHHHHHHHHHH----HHHCC--CCCCEEEE
Q ss_conf             8748975320211022-210---157889899988987----64114--87746999
Q gi|254780313|r  135 NPDLVLSDMAYPTIGH-RKI---DHLRTMSLCEAATFF----ALEML--NIGGDFLV  181 (227)
Q Consensus       135 ~~DlVlSDmapn~SG~-~~~---D~~~~~~L~~~al~~----A~~~L--k~gG~fV~  181 (227)
                      +.|+++.-.+-...|. .+.   |-.+.++++.....+    ++..+  +.+|..|.
T Consensus        80 ~iDiLVNNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Iin  136 (235)
T PRK07326         80 GLDILVNNAGVGHFAPVEELTLEEWRLVIDTNLTGAFYTIKAAVPALLKRGGGYIVN  136 (235)
T ss_pred             CCEEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf             966999888778998826599999999999987999999999999999719988999


No 374
>KOG1201 consensus
Probab=26.89  E-value=49  Score=14.42  Aligned_cols=113  Identities=18%  Similarity=0.215  Sum_probs=65.2

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC------CCCCC---CCEEEECCCCHHHHHHHHHHHCC---C
Q ss_conf             796788850455306899999706878832786411213------33469---81783011220799999997313---8
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD------MEPIL---GVKFFKFDFLDLDSWEFIRQAIG---G  134 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~------~~~i~---gv~~~~gDi~~~~~~~~i~~~l~---~  134 (227)
                      .|..||=-|++-|===+.|.+...   .+.+++-.|++.      .+.+.   .++.++.|+.+.+-.....+.+.   |
T Consensus        37 ~g~~vLITGgg~GlGr~ialefa~---rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~e~G  113 (300)
T KOG1201          37 SGEIVLITGGGSGLGRLIALEFAK---RGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKKEVG  113 (300)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHH---HCCEEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHCC
T ss_conf             698899968986078999999997---07848999556512399999998448525899558988999999999998619


Q ss_pred             CCCEEEECCC--HHHCCCCCCHHH--HHHHHHHHH-----HHHHHHCCC-CCCEEEEE
Q ss_conf             8748975320--211022210157--889899988-----987641148-77469999
Q gi|254780313|r  135 NPDLVLSDMA--YPTIGHRKIDHL--RTMSLCEAA-----TFFALEMLN-IGGDFLVK  182 (227)
Q Consensus       135 ~~DlVlSDma--pn~SG~~~~D~~--~~~~L~~~a-----l~~A~~~Lk-~gG~fV~K  182 (227)
                      .+|+++.-++  |..+.....|+.  ++++.+..+     -.|.-..+. ..|+.|+=
T Consensus       114 ~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~~GHIV~I  171 (300)
T KOG1201         114 DVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENNNGHIVTI  171 (300)
T ss_pred             CCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             9549983664244887567998999999987668999999987388874579639983


No 375
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=26.48  E-value=49  Score=14.43  Aligned_cols=158  Identities=9%  Similarity=0.061  Sum_probs=65.8

Q ss_pred             HHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCC-C-CCCC----CCC-EE
Q ss_conf             988184479999999998645831379678885045530689999970687883278641121-3-3346----981-78
Q gi|254780313|r   42 AQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL-D-MEPI----LGV-KF  114 (227)
Q Consensus        42 Ak~~gyrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~-~-~~~i----~gv-~~  114 (227)
                      =+.+||....|.--.|--+.+.--.+.-.+||+.---+.-.+++.+. ......+ |+-+.-. . -+.+    .|+ .+
T Consensus        20 L~~~g~~V~~a~~g~~al~~~~~~~~DlvilDi~lP~~dG~~l~~~i-R~~~~~p-II~lta~~~~~d~i~~l~~GADDY   97 (223)
T PRK11517         20 LSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQILQTL-RTAKQTP-VICLTARDSVDDRVRGLDSGANDY   97 (223)
T ss_pred             HHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHH-HHCCCCC-EEEEECCCCHHHHHHHHHCCCCEE
T ss_conf             99889999998999999999852899999984999873689999999-8568864-899956556578999998398776


Q ss_pred             EECCCCHHHHHHHHHHHCCCC----CCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE------EE
Q ss_conf             301122079999999731388----74897532021102221015788989998898764114877469999------30
Q gi|254780313|r  115 FKFDFLDLDSWEFIRQAIGGN----PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK------TF  184 (227)
Q Consensus       115 ~~gDi~~~~~~~~i~~~l~~~----~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K------~F  184 (227)
                      +.--|.-.+....|...+...    ..+-+.|...|.....-.-....+.|......+..-+++..|..|.+      +|
T Consensus        98 l~KPf~~~EL~aRi~a~lrr~~~~~~~~~~~~l~ld~~~~~v~~~~~~i~LT~~E~~LL~~L~~~~g~vvsre~l~~~vw  177 (223)
T PRK11517         98 LVKPFSFSELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW  177 (223)
T ss_pred             EECCCCHHHHHHHHHHHHCCCCCCCCCEEECCEEEEHHHEEEEECCEEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHC
T ss_conf             20897789999999999641457787179887898001318962998982999999999999868998598999999962


Q ss_pred             C----C--CCHHHHHHHHHHHCC
Q ss_conf             5----9--998999999986258
Q gi|254780313|r  185 Q----G--GTTNDILCLLKKHFQ  201 (227)
Q Consensus       185 ~----G--~~~~~l~~~l~~~F~  201 (227)
                      .    +  ......+..+++..+
T Consensus       178 g~~~~~~~~~idv~I~rLRkKl~  200 (223)
T PRK11517        178 GINFDSDTNTVDVAIRRLRAKVD  200 (223)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHC
T ss_conf             98878885879999999999857


No 376
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain; InterPro: IPR013476    Methylamine dehydrogenase is a periplasmic enzyme found in Gram-negative methylotrophs . It is induced when grown on methylamine as a growth substrate and catalyses the oxidative deamination of primary amines to their corresponding aldehydes. ; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0042597 periplasmic space.
Probab=26.47  E-value=12  Score=18.17  Aligned_cols=11  Identities=55%  Similarity=1.081  Sum_probs=5.2

Q ss_pred             CCCHHHHHHHH
Q ss_conf             55306899999
Q gi|254780313|r   77 SPGSWSQVAAR   87 (227)
Q Consensus        77 aPGgWsQva~~   87 (227)
                      .||||-|||-.
T Consensus       254 rPGGWQ~vAyH  264 (360)
T TIGR02658       254 RPGGWQQVAYH  264 (360)
T ss_pred             CCCCCCEEEEE
T ss_conf             77873225677


No 377
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=26.21  E-value=22  Score=16.55  Aligned_cols=18  Identities=28%  Similarity=0.433  Sum_probs=9.2

Q ss_pred             CCCCEEEEEECCCCHHHH
Q ss_conf             379678885045530689
Q gi|254780313|r   66 QSNRRIVDLGSSPGSWSQ   83 (227)
Q Consensus        66 k~g~~VlDLGaaPGgWsQ   83 (227)
                      |||..|+||.++-||=++
T Consensus       272 kpGSViVDlAa~~GGNce  289 (356)
T COG3288         272 KPGSVIVDLAAETGGNCE  289 (356)
T ss_pred             CCCCEEEEEHHHCCCCCC
T ss_conf             899689981322289865


No 378
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=26.02  E-value=50  Score=14.33  Aligned_cols=33  Identities=18%  Similarity=-0.023  Sum_probs=14.6

Q ss_pred             HHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEC
Q ss_conf             818447999999999864583137967888504
Q gi|254780313|r   44 LEGWRARSAYKLLQINEKHQILQSNRRIVDLGS   76 (227)
Q Consensus        44 ~~gyrsRaafKL~eId~kf~l~k~g~~VlDLGa   76 (227)
                      .+||.-..|.--.|-.+.+.--.+.-.+||+.-
T Consensus        22 ~~g~~V~~a~~g~~a~~~~~~~~~DlvilDi~l   54 (219)
T PRK10336         22 KMGFSVDWFTQGRQGKEALYSAPYDAVILDLTL   54 (219)
T ss_pred             HCCCEEEEECCHHHHHHHHHCCCCCEEEEECCC
T ss_conf             879999998999999999862896999997999


No 379
>pfam11775 CobT_C Cobalamin biosynthesis protein CobT VWA domain. This family consists of several bacterial cobalamin biosynthesis (CobT) proteins. CobT is involved in the transformation of precorrin-3 into cobyrinic acid.
Probab=25.76  E-value=38  Score=15.09  Aligned_cols=11  Identities=36%  Similarity=0.162  Sum_probs=9.1

Q ss_pred             CCCEEEECCCH
Q ss_conf             87489753202
Q gi|254780313|r  135 NPDLVLSDMAY  145 (227)
Q Consensus       135 ~~DlVlSDmap  145 (227)
                      +.=.|+||+||
T Consensus       137 kILmViSDGaP  147 (220)
T pfam11775       137 KILLMISDGAP  147 (220)
T ss_pred             EEEEEECCCCC
T ss_conf             69999758996


No 380
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=25.64  E-value=48  Score=14.44  Aligned_cols=14  Identities=14%  Similarity=0.223  Sum_probs=7.8

Q ss_pred             CHHHHHHHHHHHCC
Q ss_conf             20799999997313
Q gi|254780313|r  120 LDLDSWEFIRQAIG  133 (227)
Q Consensus       120 ~~~~~~~~i~~~l~  133 (227)
                      ..++.+..+...+.
T Consensus       244 L~~~~Q~kLl~~L~  257 (469)
T PRK10923        244 MPLDVQTRLLRVLA  257 (469)
T ss_pred             CCHHHHHHHHHHHH
T ss_conf             89999999999985


No 381
>TIGR00841 bass bile acid transporter; InterPro: IPR004710   Functionally characterised members of the bile Acid:Na+ Symporter (BASS) family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants and bacteria. ; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0015711 organic anion transport, 0016021 integral to membrane.
Probab=25.61  E-value=21  Score=16.77  Aligned_cols=16  Identities=19%  Similarity=0.370  Sum_probs=10.7

Q ss_pred             EEEEECCCCHHHHHHH
Q ss_conf             8885045530689999
Q gi|254780313|r   71 IVDLGSSPGSWSQVAA   86 (227)
Q Consensus        71 VlDLGaaPGgWsQva~   86 (227)
                      |+=+||+|||=.=++.
T Consensus       114 ~~i~gccPGG~aSNv~  129 (374)
T TIGR00841       114 VLIVGCCPGGTASNVF  129 (374)
T ss_pred             HHHHHCCCCCCHHHHH
T ss_conf             5664138986289999


No 382
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=25.60  E-value=51  Score=14.28  Aligned_cols=33  Identities=24%  Similarity=0.235  Sum_probs=21.4

Q ss_pred             CCCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEECCC
Q ss_conf             4698178301122079999999731388748975320
Q gi|254780313|r  108 PILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA  144 (227)
Q Consensus       108 ~i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDma  144 (227)
                      +-+.+.|+.|||.|.+....+.   . .+|+|++=+|
T Consensus        51 ~~~~i~f~~gDIrD~~~l~~~~---~-~vD~VfHaAA   83 (324)
T TIGR03589        51 PAPCLRFFIGDVRDKERLTRAL---R-GVDYVVHAAA   83 (324)
T ss_pred             CCCCEEEEECCCCCHHHHHHHH---C-CCCEEEECCC
T ss_conf             8987599967777889999763---4-8889999462


No 383
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=25.06  E-value=53  Score=14.21  Aligned_cols=79  Identities=16%  Similarity=0.098  Sum_probs=47.0

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC----------CC-CCCCEEEECCCCHHHHHHHHHHHCC--
Q ss_conf             7967888504553068999997068788327864112133----------34-6981783011220799999997313--
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM----------EP-ILGVKFFKFDFLDLDSWEFIRQAIG--  133 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~----------~~-i~gv~~~~gDi~~~~~~~~i~~~l~--  133 (227)
                      .|.++|=.|++-|==...|..+ ...|  ..|+-.|...-          .. -..+.++++|+++++..+.+.+...  
T Consensus         4 ~gK~~lITGgs~GIG~aia~~l-a~~G--~~Vii~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlt~~~~v~~~~~~~~~~   80 (248)
T PRK05557          4 EGKVALVTGASRGIGRAIAERL-AAQG--ANVVLNYASSEAGAEALVAEIGALGGKALAVQGDVADAESIERAVDEAKAE   80 (248)
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHCC--CEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHH
T ss_conf             9988999489768999999999-9879--989999698565899999999963995899990389999999999999998


Q ss_pred             -CCCCEEEECCCHHHC
Q ss_conf             -887489753202110
Q gi|254780313|r  134 -GNPDLVLSDMAYPTI  148 (227)
Q Consensus       134 -~~~DlVlSDmapn~S  148 (227)
                       ++.|+++.-.+....
T Consensus        81 ~g~iD~linnAg~~~~   96 (248)
T PRK05557         81 FGGVDILVNNAGITRD   96 (248)
T ss_pred             CCCCCEEEECCCCCCC
T ss_conf             2997199989977999


No 384
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=24.80  E-value=53  Score=14.18  Aligned_cols=158  Identities=10%  Similarity=0.082  Sum_probs=63.0

Q ss_pred             HHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEEC-CCCC-CCC----CCC-EEE
Q ss_conf             881844799999999986458313796788850455306899999706878832786411-2133-346----981-783
Q gi|254780313|r   43 QLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID-ILDM-EPI----LGV-KFF  115 (227)
Q Consensus        43 k~~gyrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVD-l~~~-~~i----~gv-~~~  115 (227)
                      .++||....|.--.|-.+.+.--.+.-.+||+.---+...+++.+ +...+...-|+-+- .... +.+    .|+ .++
T Consensus        21 ~~~G~~v~~a~~g~~a~~~~~~~~~DlvilDi~lP~~~G~~l~~~-iR~~~~~~PII~Lta~~~~~d~i~~l~~GADDYl   99 (226)
T PRK09836         21 TEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDIVRM-LRSANKGMPILLLTALGTIEHRVKGLELGADDYL   99 (226)
T ss_pred             HHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHH-HHHHCCCCEEEEEECCCCHHHHHHHHHCCCCEEE
T ss_conf             878999999899999999985189999998899999987204356-7761679609999445898899999976996886


Q ss_pred             ECCCCHHHHHHHHHHHCCCC------CCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE------E
Q ss_conf             01122079999999731388------74897532021102221015788989998898764114877469999------3
Q gi|254780313|r  116 KFDFLDLDSWEFIRQAIGGN------PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK------T  183 (227)
Q Consensus       116 ~gDi~~~~~~~~i~~~l~~~------~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K------~  183 (227)
                      .--|.-.+....|...+...      ..+.+.|...|.....-.-.-..+.|......+..-++...|..|.+      +
T Consensus       100 ~KPf~~~EL~aRi~allrr~~~~~~~~~~~~~~l~~d~~~~~v~~~g~~v~LT~~E~~lL~~L~~~~g~vvsre~l~~~v  179 (226)
T PRK09836        100 VKPFAFAELLARVRTLLRRGAAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV  179 (226)
T ss_pred             ECCCCHHHHHHHHHHHHCCCCCCCCCCEEEECCEEEECCCEEEEECCEEEECCHHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf             36876799999999996626666776507987799851411898899998568899999999986899648799999996


Q ss_pred             ECC----C--CHHHHHHHHHHHCC
Q ss_conf             059----9--98999999986258
Q gi|254780313|r  184 FQG----G--TTNDILCLLKKHFQ  201 (227)
Q Consensus       184 F~G----~--~~~~l~~~l~~~F~  201 (227)
                      |..    .  .....+..+++..+
T Consensus       180 w~~~~~~~~~~vdv~I~rLR~Kl~  203 (226)
T PRK09836        180 WDMNFDSDTNAIDVAVKRLRGKID  203 (226)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf             288878885889999999999857


No 385
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=24.36  E-value=49  Score=14.38  Aligned_cols=52  Identities=15%  Similarity=0.205  Sum_probs=40.6

Q ss_pred             HHHHHHCCHHHHHHHHHHHHHHCCC-CCCCCEEEEEECCCCHHHHHHHHHHCC
Q ss_conf             9998818447999999999864583-137967888504553068999997068
Q gi|254780313|r   40 QRAQLEGWRARSAYKLLQINEKHQI-LQSNRRIVDLGSSPGSWSQVAARITGS   91 (227)
Q Consensus        40 ~~Ak~~gyrsRaafKL~eId~kf~l-~k~g~~VlDLGaaPGgWsQva~~~~~~   91 (227)
                      .++++.+|-+|..|+.+-.++.... -+=+.+|+++|..=|+-++-++++.|-
T Consensus       191 ~~~~~~~~~~~~~f~~ig~~~l~~~~~~l~~~i~~~g~~vg~Lt~e~A~~lGL  243 (544)
T COG1069         191 WLEHEGGLWSADFFDKIGLDDLRELDSKLPEDIVPAGEPVGGLTPEAAQELGL  243 (544)
T ss_pred             EECCCCCCCCHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHCC
T ss_conf             20323478878899754934542146668865203776566569999998389


No 386
>KOG2352 consensus
Probab=24.35  E-value=54  Score=14.13  Aligned_cols=131  Identities=18%  Similarity=0.248  Sum_probs=72.7

Q ss_pred             CCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC--C-CCCCCEEEECCCCH---HHHHHHHHHHCC-----CCC
Q ss_conf             967888504553068999997068788327864112133--3-46981783011220---799999997313-----887
Q gi|254780313|r   68 NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM--E-PILGVKFFKFDFLD---LDSWEFIRQAIG-----GNP  136 (227)
Q Consensus        68 g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~--~-~i~gv~~~~gDi~~---~~~~~~i~~~l~-----~~~  136 (227)
                      ...|+.||+  |+..++..--.+    .-.|.+|-+-|.  + +-....|.+-|-.+   .+-.+.+++..+     -.+
T Consensus       298 ~~lvvg~gg--G~l~sfl~~~~p----~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~  371 (482)
T KOG2352         298 KQLVVGLGG--GGLPSFLHMSLP----KFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICP  371 (482)
T ss_pred             CEEEEECCC--CCCCCCEEEECC----CCCEEEEEECHHHHHCCHHHHCHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCC
T ss_conf             579983287--754002002057----34115999781684055765253565522003730359999986156446687


Q ss_pred             CEEEECC-CHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE-CCCCH-HHHHHHHHHHCCEEEEEC
Q ss_conf             4897532-02110222101578898999889876411487746999930-59998-999999986258469976
Q gi|254780313|r  137 DLVLSDM-AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF-QGGTT-NDILCLLKKHFQKVIHVK  207 (227)
Q Consensus       137 DlVlSDm-apn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F-~G~~~-~~l~~~l~~~F~~V~~~K  207 (227)
                      |+++-|- +++ +  +-....-+.-++..+|--+...|.|.|-|++-+- +.+.+ .+++..++..|...+..+
T Consensus       372 dvl~~dvds~d-~--~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~~~~~~~~~~l~~vf~~l~~~~  442 (482)
T KOG2352         372 DVLMVDVDSKD-S--HGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNSSFKDEVLMNLAKVFPQLYHHQ  442 (482)
T ss_pred             CEEEEECCCCC-C--CCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             57999778998-5--66728964787899988776106866348998753884231999975643237776343


No 387
>KOG2811 consensus
Probab=24.30  E-value=54  Score=14.13  Aligned_cols=38  Identities=21%  Similarity=0.257  Sum_probs=27.6

Q ss_pred             HHHHHHHCCCC-CCCCEEEEEECCCCHHHHHHHHHHCCC
Q ss_conf             99998645831-379678885045530689999970687
Q gi|254780313|r   55 LLQINEKHQIL-QSNRRIVDLGSSPGSWSQVAARITGSN   92 (227)
Q Consensus        55 L~eId~kf~l~-k~g~~VlDLGaaPGgWsQva~~~~~~~   92 (227)
                      |++.-+.-++| .|+..++++||+-|-.+++++......
T Consensus       169 llg~lE~~~~l~~~~~~~vEFGAGrg~Ls~~vs~~l~~~  207 (420)
T KOG2811         169 LLGHLEELGLLTAPSSCFVEFGAGRGELSRWVSDCLQIQ  207 (420)
T ss_pred             HHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCC
T ss_conf             876787535667876258996687028999999985346


No 388
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=24.25  E-value=54  Score=14.12  Aligned_cols=68  Identities=18%  Similarity=0.311  Sum_probs=35.5

Q ss_pred             CCCCCEEEEC-CCHHHCCCCCCHHHHHHHH-----H---HHHHHHHHHCCCCCC-EEEEEEECCCCHHHHHHHHHHHCCE
Q ss_conf             3887489753-2021102221015788989-----9---988987641148774-6999930599989999999862584
Q gi|254780313|r  133 GGNPDLVLSD-MAYPTIGHRKIDHLRTMSL-----C---EAATFFALEMLNIGG-DFLVKTFQGGTTNDILCLLKKHFQK  202 (227)
Q Consensus       133 ~~~~DlVlSD-mapn~SG~~~~D~~~~~~L-----~---~~al~~A~~~Lk~gG-~fV~K~F~G~~~~~l~~~l~~~F~~  202 (227)
                      ...+|+|+.| ..|+.+|.......+...-     .   ......+...++-|- -||.|-+.   .++++..++..+..
T Consensus        45 ~~~pdlvllDi~mP~~~G~e~l~~l~~~~p~~~vivlT~~~~~~~~~~al~~GA~gyl~K~~~---~~~L~~aI~~~l~~  121 (202)
T PRK09390         45 GLRFGCVVTDVRMPGIDGIELLRRLKARGSPLPVIVMTGHGDVPLAVEAMKLGAIDFIEKPFE---DERLIGAIERALAQ  121 (202)
T ss_pred             CCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHCCCHHHCCCCCC---HHHHHHHHHHHHHH
T ss_conf             579799987799999896079999872289986799974574888899998294644559999---99999999999971


Q ss_pred             E
Q ss_conf             6
Q gi|254780313|r  203 V  203 (227)
Q Consensus       203 V  203 (227)
                      .
T Consensus       122 ~  122 (202)
T PRK09390        122 A  122 (202)
T ss_pred             C
T ss_conf             5


No 389
>COG3252 Methenyltetrahydromethanopterin cyclohydrolase [Coenzyme metabolism]
Probab=24.24  E-value=45  Score=14.66  Aligned_cols=26  Identities=15%  Similarity=0.420  Sum_probs=18.8

Q ss_pred             CCCCCCEEEEEEC-CCCHHHH--HHHHHH
Q ss_conf             3137967888504-5530689--999970
Q gi|254780313|r   64 ILQSNRRIVDLGS-SPGSWSQ--VAARIT   89 (227)
Q Consensus        64 l~k~g~~VlDLGa-aPGgWsQ--va~~~~   89 (227)
                      -+.+|.+|+|+|- +||||--  +..+.+
T Consensus        27 kLenGatViDcGV~~~Gg~eAG~l~t~vc   55 (314)
T COG3252          27 KLENGATVIDCGVNVDGGYEAGLLLTEVC   55 (314)
T ss_pred             EECCCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf             81389889982222587355778999887


No 390
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=24.21  E-value=55  Score=14.11  Aligned_cols=115  Identities=14%  Similarity=0.178  Sum_probs=58.9

Q ss_pred             HHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC--C--CCCCCEEEEC
Q ss_conf             98818447999999999864583137967888504553068999997068788327864112133--3--4698178301
Q gi|254780313|r   42 AQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM--E--PILGVKFFKF  117 (227)
Q Consensus        42 Ak~~gyrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~--~--~i~gv~~~~g  117 (227)
                      |-.-..-.-.||-++   .+..-++++++||=.|+ -||--+++.++....|  .+|++++-.+-  +  .--|+..+ -
T Consensus       118 AA~~~~~~~Ta~~~l---~~~~~~~~g~~vLi~ga-aGgVG~~avQlAk~~G--a~Vi~t~~s~~k~e~~~~lGA~~v-i  190 (327)
T PRK10754        118 AAASFLKGLTVYYLL---RKTYEIKPDEQFLFHAA-AGGVGLIACQWAKALG--AKLIGTVGSAQKAQRALKAGAWQV-I  190 (327)
T ss_pred             HHHHHHHHHHHHHHH---HHCCCCCCCCEEEEECC-CCCCCHHHHHHHHHCC--CEEEEEECCHHHHHHHHHCCCCEE-E
T ss_conf             775213588798876---53137899999999817-7611268999999869--999999898999999996699999-9


Q ss_pred             CCCHHHHHHHHHHHCCC-CCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             12207999999973138-87489753202110222101578898999889876411487746999
Q gi|254780313|r  118 DFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV  181 (227)
Q Consensus       118 Di~~~~~~~~i~~~l~~-~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~  181 (227)
                      |..+.+..+.+.+..++ .+|+|+--     .|...             +.-+..+|+++|.+|.
T Consensus       191 ~~~~~~~~~~i~~~t~g~gvdvv~D~-----vG~~~-------------~~~~~~~l~~~G~iv~  237 (327)
T PRK10754        191 NYREENIVERVKEITGGKKVRVVYDS-----VGKDT-------------WEASLDCLQRRGLMVS  237 (327)
T ss_pred             ECCCCCHHHHHHHHHCCCCCEEEEEC-----CCHHH-------------HHHHHHHHHCCCEEEE
T ss_conf             89999999999998689983699989-----88899-------------9999998634989999


No 391
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase; InterPro: IPR011831    This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2, beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this entry. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This entry describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.; GO: 0008878 glucose-1-phosphate adenylyltransferase activity.
Probab=24.18  E-value=55  Score=14.11  Aligned_cols=42  Identities=17%  Similarity=0.180  Sum_probs=34.7

Q ss_pred             CCCCC-CCCCCCEEEECC-CCHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf             12133-346981783011-2207999999973138874897532
Q gi|254780313|r  102 DILDM-EPILGVKFFKFD-FLDLDSWEFIRQAIGGNPDLVLSDM  143 (227)
Q Consensus       102 Dl~~~-~~i~gv~~~~gD-i~~~~~~~~i~~~l~~~~DlVlSDm  143 (227)
                      +++.. ..++.|-.+-|| |..++..+++..+...++|+.+|=+
T Consensus       111 ~~i~~~~~p~yvlILsGDHiYkMDy~~mL~~H~e~~Ad~Tia~~  154 (421)
T TIGR02091       111 DLIEETYDPEYVLILSGDHIYKMDYEKMLDYHIEKGADLTIACI  154 (421)
T ss_pred             HHHHCCCCCCEEEEECCCCEECCCHHHHHHHHHHCCCCEEEEEE
T ss_conf             98740169248999346610104878999999856798799854


No 392
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=23.90  E-value=50  Score=14.36  Aligned_cols=158  Identities=16%  Similarity=0.133  Sum_probs=64.2

Q ss_pred             HHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEE-EECCCCCCCCC----CC-EEEE
Q ss_conf             881844799999999986458313796788850455306899999706878832786-41121333469----81-7830
Q gi|254780313|r   43 QLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV-AIDILDMEPIL----GV-KFFK  116 (227)
Q Consensus        43 k~~gyrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~Vi-gVDl~~~~~i~----gv-~~~~  116 (227)
                      +.+||.-..|.-..|-.+.+.-.++.-.+||+.---+.-.+++.+. .....-+.|+ .-.-...+.+.    |+ .++.
T Consensus        22 ~~~g~~V~~a~~~~~al~~~~~~~~DlviLDi~lP~~dG~~l~~~i-R~~~~~pII~lta~~~~~d~i~~l~~GADDYl~  100 (225)
T PRK10529         22 EGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDL-RQWSAIPVIVLSARSEESDKIAALDAGADDYLS  100 (225)
T ss_pred             HHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEE-ECCCCCCEEEEECCCCHHHHHHHHHCCCCEEEE
T ss_conf             9889999997999999998611799899980788888876331000-127998789995468989999999769876540


Q ss_pred             CCCCHHHHHHHHHHHCCC-----CCCEEE--ECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE------E
Q ss_conf             112207999999973138-----874897--532021102221015788989998898764114877469999------3
Q gi|254780313|r  117 FDFLDLDSWEFIRQAIGG-----NPDLVL--SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK------T  183 (227)
Q Consensus       117 gDi~~~~~~~~i~~~l~~-----~~DlVl--SDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K------~  183 (227)
                      --|.-.+....|...+..     ..+-++  .|...|.....-.-.-..+.|......+..-+++..|..|.+      +
T Consensus       101 KPf~~~eL~aRi~a~lrr~~~~~~~~~~~~~~~l~~d~~~~~v~~~g~~i~LT~~E~~lL~~L~~~~g~vvsre~L~~~v  180 (225)
T PRK10529        101 KPFGIGELQARLRVALRRHSATPAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV  180 (225)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCEEEECCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCEECHHHHHHHH
T ss_conf             78545999999999971403788878649999999990339999999613136689999999997799619699999996


Q ss_pred             ECC----CC--HHHHHHHHHHHCC
Q ss_conf             059----99--8999999986258
Q gi|254780313|r  184 FQG----GT--TNDILCLLKKHFQ  201 (227)
Q Consensus       184 F~G----~~--~~~l~~~l~~~F~  201 (227)
                      |..    .+  ....+..+++.++
T Consensus       181 w~~~~~~~~~~idv~I~rLRkKl~  204 (225)
T PRK10529        181 WGPNAVEHSHYLRIYMGHLRQKLE  204 (225)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf             499989886879999999999720


No 393
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=23.82  E-value=55  Score=14.07  Aligned_cols=47  Identities=4%  Similarity=-0.111  Sum_probs=29.0

Q ss_pred             HHHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHH
Q ss_conf             99881844799999999986458313796788850455306899999
Q gi|254780313|r   41 RAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR   87 (227)
Q Consensus        41 ~Ak~~gyrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~   87 (227)
                      .-..+||-...|.-..|..+.+.-..|.-.++|+.-.=+...+++.+
T Consensus        29 ~L~~~g~~V~~a~~~~eal~~~~~~~~DliilDi~lp~~~Gl~l~~~   75 (240)
T PRK10710         29 YLRAASYAPTLISHGDEVLPYVRQTPPDLILLDLMLPGTDGLTLCRE   75 (240)
T ss_pred             HHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHH
T ss_conf             99988999999899999999997379989998799988877632112


No 394
>KOG0023 consensus
Probab=23.80  E-value=56  Score=14.06  Aligned_cols=94  Identities=21%  Similarity=0.276  Sum_probs=51.0

Q ss_pred             HCCCCCCCCEEEEEECC-CCHHHHHHHHHHCCCCCCEEEEEECCCC------CCCCCCCEEEECCCC-HHHHHHHHHHHC
Q ss_conf             45831379678885045-5306899999706878832786411213------334698178301122-079999999731
Q gi|254780313|r   61 KHQILQSNRRIVDLGSS-PGSWSQVAARITGSNANNTRVVAIDILD------MEPILGVKFFKFDFL-DLDSWEFIRQAI  132 (227)
Q Consensus        61 kf~l~k~g~~VlDLGaa-PGgWsQva~~~~~~~~~~~~VigVDl~~------~~~i~gv~~~~gDi~-~~~~~~~i~~~l  132 (227)
                      .+++- ||+.|-=.|++ =|+.   +.+.-..  .+.+|+++|--.      ++.+ |+..+- |.+ +++-.+.+...+
T Consensus       176 ~~g~~-pG~~vgI~GlGGLGh~---aVq~AKA--MG~rV~vis~~~~kkeea~~~L-GAd~fv-~~~~d~d~~~~~~~~~  247 (360)
T KOG0023         176 RSGLG-PGKWVGIVGLGGLGHM---AVQYAKA--MGMRVTVISTSSKKKEEAIKSL-GADVFV-DSTEDPDIMKAIMKTT  247 (360)
T ss_pred             HCCCC-CCCEEEEECCCCCCHH---HHHHHHH--HCCEEEEEECCCHHHHHHHHHC-CCCEEE-EECCCHHHHHHHHHHH
T ss_conf             73999-9868988557640168---9999987--0867999927853489999854-962158-8427878999998752


Q ss_pred             CCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             3887489753202110222101578898999889876411487746999
Q gi|254780313|r  133 GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV  181 (227)
Q Consensus       133 ~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~  181 (227)
                      ++-+|-|.+     .              +..+++-++.+||++|++|.
T Consensus       248 dg~~~~v~~-----~--------------a~~~~~~~~~~lk~~Gt~V~  277 (360)
T KOG0023         248 DGGIDTVSN-----L--------------AEHALEPLLGLLKVNGTLVL  277 (360)
T ss_pred             CCCCEEEEE-----C--------------CCCCHHHHHHHHCCCCEEEE
T ss_conf             675023210-----2--------------32443888876103978999


No 395
>PRK05650 short chain dehydrogenase; Provisional
Probab=23.79  E-value=56  Score=14.06  Aligned_cols=140  Identities=16%  Similarity=0.181  Sum_probs=70.5

Q ss_pred             EEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CC-CCCCCEEEECCCCHHHHHHHHHHHCC---CCC
Q ss_conf             788850455306899999706878832786411213---------33-46981783011220799999997313---887
Q gi|254780313|r   70 RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------ME-PILGVKFFKFDFLDLDSWEFIRQAIG---GNP  136 (227)
Q Consensus        70 ~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~-~i~gv~~~~gDi~~~~~~~~i~~~l~---~~~  136 (227)
                      +||=-|++-|==...|.+.. ..|  .+|+-+|...         +. .-..+.++..|+++++..+.+.+...   +.+
T Consensus         2 rVlITGassGIG~alA~~la-~~G--~~V~l~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~~~~~~~~v~~~~g~i   78 (270)
T PRK05650          2 RVMITGAASGLGRAIALRWA-REG--WRLALADVNEEGGEETLKELREAGGDGFYQRCDVRDYSQLTALAQACEEKWGGI   78 (270)
T ss_pred             EEEEECCCCHHHHHHHHHHH-HCC--CEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCC
T ss_conf             79998876499999999999-889--989999798899999999998449928999845899999999999999983997


Q ss_pred             CEEEECCCHHHCCC-CCC---HHHHHHHHHHHHHHH----HHHCCC--CCCEEEEEE----ECCC---------------
Q ss_conf             48975320211022-210---157889899988987----641148--774699993----0599---------------
Q gi|254780313|r  137 DLVLSDMAYPTIGH-RKI---DHLRTMSLCEAATFF----ALEMLN--IGGDFLVKT----FQGG---------------  187 (227)
Q Consensus       137 DlVlSDmapn~SG~-~~~---D~~~~~~L~~~al~~----A~~~Lk--~gG~fV~K~----F~G~---------------  187 (227)
                      |+++.-.+-..-|. .+.   |....++++...+..    .+..++  .+|..|.=-    +.+.               
T Consensus        79 DiLVNNAGi~~~g~~~~~~~e~~~~~~~vNl~g~~~~~~~~lp~m~~~~~G~IvnisS~ag~~~~p~~~~Y~asK~av~~  158 (270)
T PRK05650         79 DVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKEQGKGRIVNIASMAGLMQGPAMSSYNVAKAGVVA  158 (270)
T ss_pred             CEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCHHHHHHHHHHHH
T ss_conf             78962476679986201999999999999659999999999976755699589998585552899996679999999999


Q ss_pred             CHHHHHHHHHHHCCEEEEECCCCCC
Q ss_conf             9899999998625846997686657
Q gi|254780313|r  188 TTNDILCLLKKHFQKVIHVKPVASR  212 (227)
Q Consensus       188 ~~~~l~~~l~~~F~~V~~~KP~aSR  212 (227)
                      -++.|...+..+=-.|..+-|-.-+
T Consensus       159 ~tesL~~El~~~gI~V~~v~PG~v~  183 (270)
T PRK05650        159 LSETLLVELADDEIGVHVVCPSFFQ  183 (270)
T ss_pred             HHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf             9999999853219689999738898


No 396
>CHL00148 orf27 Ycf27; Reviewed
Probab=23.74  E-value=56  Score=14.06  Aligned_cols=36  Identities=17%  Similarity=0.121  Sum_probs=21.6

Q ss_pred             HHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC
Q ss_conf             8818447999999999864583137967888504553
Q gi|254780313|r   43 QLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPG   79 (227)
Q Consensus        43 k~~gyrsRaafKL~eId~kf~l~k~g~~VlDLGaaPG   79 (227)
                      ..+||..-.|.--.|..+.+.--.|.-.+||++- |+
T Consensus        27 ~~~G~~v~~a~~g~~a~~~~~~~~~DlviLDi~L-P~   62 (240)
T CHL00148         27 SIIGYEVITASDGEEALKLFHQEQPDLVILDVMM-PK   62 (240)
T ss_pred             HHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCC-CC
T ss_conf             9789999998999999999974799999997999-98


No 397
>PRK07060 short chain dehydrogenase; Provisional
Probab=23.23  E-value=57  Score=14.00  Aligned_cols=111  Identities=17%  Similarity=0.217  Sum_probs=62.1

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC--C---CCCCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             796788850455306899999706878832786411213--3---34698178301122079999999731388748975
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD--M---EPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLS  141 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~--~---~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlS  141 (227)
                      .|.++|=-|++-| -=.-+++.....|  .+|+.+|...  .   ..-.++..++.|+.+....+.+.+.+ ++.|+++.
T Consensus         8 ~gK~~lVTG~~~G-IG~aia~~la~~G--a~V~~~~r~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~-g~iDilVn   83 (245)
T PRK07060          8 SGKSVLVTGASSG-IGRACAVALAARG--ARVVAAARNQADLDRLAGETGCEPLRLDVGDDAAIRAALAGA-GAFDGLVN   83 (245)
T ss_pred             CCCEEEEECCCCH-HHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHC-CCCCEEEE
T ss_conf             9998999477768-9999999999879--999999799899999998639879998079999999999965-99989998


Q ss_pred             CCCHHHCC-CCCC---HHHHHHHHHHHHHHH----HHH-CCC--CCCEEEE
Q ss_conf             32021102-2210---157889899988987----641-148--7746999
Q gi|254780313|r  142 DMAYPTIG-HRKI---DHLRTMSLCEAATFF----ALE-MLN--IGGDFLV  181 (227)
Q Consensus       142 Dmapn~SG-~~~~---D~~~~~~L~~~al~~----A~~-~Lk--~gG~fV~  181 (227)
                      -.+....+ ..+.   |-.+.++++.....+    +.+ +++  .+|..|.
T Consensus        84 nAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~k~~~~~m~~~~~~G~IIn  134 (245)
T PRK07060         84 CAGIASLESAIDMTAAGFDRVMAVNARGALLVARHVARAMIRAGRGGSIVN  134 (245)
T ss_pred             CCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf             988799999013999999999999709999999999999998089807999


No 398
>PRK12939 short chain dehydrogenase; Provisional
Probab=22.98  E-value=58  Score=13.97  Aligned_cols=111  Identities=16%  Similarity=0.121  Sum_probs=59.8

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC--C----CCC----CCCEEEECCCCHHHHHHHHHHHCC---
Q ss_conf             796788850455306899999706878832786411213--3----346----981783011220799999997313---
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD--M----EPI----LGVKFFKFDFLDLDSWEFIRQAIG---  133 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~--~----~~i----~gv~~~~gDi~~~~~~~~i~~~l~---  133 (227)
                      .|.++|=-|++-| -=+-+++.....|.  .|+..|...  .    +.+    ..+.++++|+++.+..+.+.+...   
T Consensus         6 ~~KvalVTGgs~G-IG~aia~~la~~Ga--~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~~~~~~~~~~~~~   82 (250)
T PRK12939          6 AGKRALVTGAARG-LGAAFAEALAEAGA--TVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAAL   82 (250)
T ss_pred             CCCEEEEECCCCH-HHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHC
T ss_conf             9987999583668-99999999998799--99999698899999999999559909999924899999999999999974


Q ss_pred             CCCCEEEECCCHHHCCC-CCC---HHHHHHHHHHHH----HHHHHHCCC--CCCEEE
Q ss_conf             88748975320211022-210---157889899988----987641148--774699
Q gi|254780313|r  134 GNPDLVLSDMAYPTIGH-RKI---DHLRTMSLCEAA----TFFALEMLN--IGGDFL  180 (227)
Q Consensus       134 ~~~DlVlSDmapn~SG~-~~~---D~~~~~~L~~~a----l~~A~~~Lk--~gG~fV  180 (227)
                      ++.|+++.-.+....+. .+.   |-...++++...    ...+.+.|+  .+|..|
T Consensus        83 g~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~iNl~~~~~~~k~~~~~m~~~~~G~II  139 (250)
T PRK12939         83 GGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMSRAALPHLRDSGRGRIV  139 (250)
T ss_pred             CCCCEEEECCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf             999799988778999990349999999999998299999999999999984993799


No 399
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role  in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3-  ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=22.93  E-value=58  Score=13.96  Aligned_cols=65  Identities=15%  Similarity=-0.084  Sum_probs=32.1

Q ss_pred             CCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCH-HHHHHHHHHHCCEE
Q ss_conf             88748975320211022210157889899988987641148774699993059998-99999998625846
Q gi|254780313|r  134 GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT-NDILCLLKKHFQKV  203 (227)
Q Consensus       134 ~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~-~~l~~~l~~~F~~V  203 (227)
                      .+.=+|+||+.||-.+...-++....+. ..    |..-++.-|.-+.=++-+.+. ..-.+.++..|.+.
T Consensus       104 rkiliviSDG~P~D~~~~~~~~~~~~D~-~~----av~e~~~~GI~~~~i~i~~~~~~~~~~~l~~i~g~~  169 (174)
T cd01454         104 RKILLVISDGEPNDLDYYEGNVFATEDA-LR----AVIEARKLGIEVFGITIDRDATTVDKEYLKNIFGEE  169 (174)
T ss_pred             CEEEEEEECCCCCCCCCCCCCHHHHHHH-HH----HHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             6799998389976677788755389999-99----999999879889999989855566999999842878


No 400
>PRK06841 short chain dehydrogenase; Provisional
Probab=22.87  E-value=58  Score=13.95  Aligned_cols=82  Identities=20%  Similarity=0.150  Sum_probs=49.3

Q ss_pred             HHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC-----C--CCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf             864583137967888504553068999997068788327864112133-----3--469817830112207999999973
Q gi|254780313|r   59 NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM-----E--PILGVKFFKFDFLDLDSWEFIRQA  131 (227)
Q Consensus        59 d~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~-----~--~i~gv~~~~gDi~~~~~~~~i~~~  131 (227)
                      |-.|+|  .|.++|=-|++-|==...| +.....|  .+|+.+|..+-     .  .-.++..+++|+++++..+.+.+.
T Consensus         8 ~m~~~l--~gKvalVTGas~GIG~aiA-~~la~~G--a~V~i~d~~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~v~~   82 (255)
T PRK06841          8 DLAFDL--SGKVAVVTGGASGIGHAIA-ELFAAKG--ARVALLDRSEDVAEVAAQLLGGNAKGLVCDVSDSQSVEAAVAA   82 (255)
T ss_pred             CCCCCC--CCCEEEEECCCCHHHHHHH-HHHHHCC--CEEEEEECCHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHH
T ss_conf             837589--9999999796778999999-9999879--9999996987899999984599669999846999999999999


Q ss_pred             CC---CCCCEEEECCCH
Q ss_conf             13---887489753202
Q gi|254780313|r  132 IG---GNPDLVLSDMAY  145 (227)
Q Consensus       132 l~---~~~DlVlSDmap  145 (227)
                      ..   ++.|+++.-.+.
T Consensus        83 ~~~~~g~iDiLVNNAGi   99 (255)
T PRK06841         83 AISAFGRIDILVNSAGV   99 (255)
T ss_pred             HHHHHCCCCEEEECCCC
T ss_conf             99981998799989978


No 401
>TIGR00308 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA:  S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs . The enzyme is found in both eukaryotes and archaea .; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing.
Probab=22.74  E-value=58  Score=13.94  Aligned_cols=145  Identities=20%  Similarity=0.154  Sum_probs=77.9

Q ss_pred             EEEEEECCCCHHH-HHHHHHHCCCCCCEEEEEECCCCC--CCCC-C--CEEEE-CCCCHHHHHHHHHHH---CCCCCCEE
Q ss_conf             7888504553068-999997068788327864112133--3469-8--17830-112207999999973---13887489
Q gi|254780313|r   70 RIVDLGSSPGSWS-QVAARITGSNANNTRVVAIDILDM--EPIL-G--VKFFK-FDFLDLDSWEFIRQA---IGGNPDLV  139 (227)
Q Consensus        70 ~VlDLGaaPGgWs-Qva~~~~~~~~~~~~VigVDl~~~--~~i~-g--v~~~~-gDi~~~~~~~~i~~~---l~~~~DlV  139 (227)
                      .|+|-=+|-|==- -||.+.- -+ .--+|++-||+|-  +.|. |  ..-+. +++.+.|.-..+...   -...||+|
T Consensus        97 ~~~dALSasGiRaiRya~E~~-fn-gv~~v~~ND~~P~Ave~I~~N~~~N~v~N~~v~n~Da~~~L~~~nkat~~~F~vi  174 (462)
T TIGR00308        97 EIADALSASGIRAIRYALEVE-FN-GVKKVFANDINPKAVESIKNNVKLNSVENIEVINEDAAAVLRKRNKATFRKFEVI  174 (462)
T ss_pred             HHHHHHHCCCHHHHHHHHHCC-CC-CCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCHHHCCCCCEE
T ss_conf             999875104088999987446-57-6106775347737889988412324422765455037999875121123676437


Q ss_pred             EECCCHHHCCCCCCHHHH-HHH-----HHHHHHHHHH--------HCCCCC-CEEEEEEECCCCHH--HHHHHHHHHCCE
Q ss_conf             753202110222101578-898-----9998898764--------114877-46999930599989--999999862584
Q gi|254780313|r  140 LSDMAYPTIGHRKIDHLR-TMS-----LCEAATFFAL--------EMLNIG-GDFLVKTFQGGTTN--DILCLLKKHFQK  202 (227)
Q Consensus       140 lSDmapn~SG~~~~D~~~-~~~-----L~~~al~~A~--------~~Lk~g-G~fV~K~F~G~~~~--~l~~~l~~~F~~  202 (227)
                      ==|  |-=|=-..+|++. ++.     |+..|.+.|.        .+|++= |.+-+|.=...|+-  -|+-.+.+.-.+
T Consensus       175 DiD--PFGspAPFvd~A~~~~~~~NglL~vTATDta~LcG~G~~~~CL~kY~GA~~l~~~~~HE~aLR~l~gf~~~~aak  252 (462)
T TIGR00308       175 DID--PFGSPAPFVDSAIRASAKRNGLLLVTATDTAALCGSGYKKSCLRKYGGAFPLKTESCHEVALRLLVGFVVREAAK  252 (462)
T ss_pred             EEC--CCCCCCCHHHHHHHHHHHCCCCEEEHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             647--877974158999999974686044066789986278886212454301345467643068999999999988875


Q ss_pred             EE-EECCCCCCCCCCEEEE
Q ss_conf             69-9768665755824989
Q gi|254780313|r  203 VI-HVKPVASRAESVEMFL  220 (227)
Q Consensus       203 V~-~~KP~aSR~~S~E~Yl  220 (227)
                      .+ ..+|.=|  -|+|.|+
T Consensus       253 Y~kA~~pllS--~~~~hY~  269 (462)
T TIGR00308       253 YEKALEPLLS--HSSDHYV  269 (462)
T ss_pred             HHHHHHHHHH--EEEEEEE
T ss_conf             6776445530--2231057


No 402
>pfam00106 adh_short short chain dehydrogenase. This family contains a wide variety of dehydrogenases.
Probab=22.59  E-value=59  Score=13.92  Aligned_cols=70  Identities=19%  Similarity=0.167  Sum_probs=36.6

Q ss_pred             CCEEEECCCCHHHHHHHHHHHC---CCCCCEEEECCCHHHCCC-CCC---HHHHHHHHHHHHHH-HHHHCCC-CCCEEE
Q ss_conf             8178301122079999999731---388748975320211022-210---15788989998898-7641148-774699
Q gi|254780313|r  111 GVKFFKFDFLDLDSWEFIRQAI---GGNPDLVLSDMAYPTIGH-RKI---DHLRTMSLCEAATF-FALEMLN-IGGDFL  180 (227)
Q Consensus       111 gv~~~~gDi~~~~~~~~i~~~l---~~~~DlVlSDmapn~SG~-~~~---D~~~~~~L~~~al~-~A~~~Lk-~gG~fV  180 (227)
                      .+.++++|+++++..+.+.+..   .++.|+++.-.+-...+. .+.   +-...++.+..... ++..++. .+|.+|
T Consensus        53 ~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~linnAG~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~~~G~Ii  131 (167)
T pfam00106        53 EVTVAACDVADRDALAALLAALPAALGPLDGVVHNAGVLDDGPLEELTPERFERVLAPKVTGAWNLHELTLDLDLGAFV  131 (167)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE
T ss_conf             5999984699999999999999997599739998871268986565269999999999869999999997553589579


No 403
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase; InterPro: IPR004393   Nicotinate-nucleotide pyrophosphorylase (2.4.2.19 from EC), also known as quinolinate phosphoribosyltransferase (decarboxylating), catalyses the conversion of nicotinate D-ribonucleotide, pyrophosphate and carbon dioxide into pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate. This enzyme is a type II phosphoribosyltransferase which provides the de novo source of nicotinate mononucleotide (NAMN) for NAD biosynthesis in both prokaryotes and eukaryotes , .   Structural studies have shown that the active form of this enzyme is a homodimer with an unsual fold , , . The N-terminal forms a mixed alpha/beta domain, while the C-terminal region forms a multi-stranded, open alpha/beta barrel. The active site is found at the C-terminal ends of the beta strands of the alpha/beta barrel, and is bordered by the N-terminal domain of the second subunit of the dimer. It contains several conserved charged residues thought to be important determinants of substrate binding and catalysis. ; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0019363 pyridine nucleotide biosynthetic process.
Probab=22.34  E-value=44  Score=14.70  Aligned_cols=25  Identities=20%  Similarity=0.296  Sum_probs=17.5

Q ss_pred             HHHHHHHHHCCCCCCEEEEC-CCHHH
Q ss_conf             99999997313887489753-20211
Q gi|254780313|r  123 DSWEFIRQAIGGNPDLVLSD-MAYPT  147 (227)
Q Consensus       123 ~~~~~i~~~l~~~~DlVlSD-mapn~  147 (227)
                      ++.+++.+.+.-.+|+||=| |.|..
T Consensus       194 enlE~a~eA~~AGADiImLDNm~p~~  219 (276)
T TIGR00078       194 ENLEEAEEAAEAGADIIMLDNMKPEE  219 (276)
T ss_pred             CCHHHHHHHHHCCCCEEECCCCCHHH
T ss_conf             89899999997099599806989479


No 404
>TIGR00675 dcm DNA-cytosine methyltransferase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.73 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine , , . In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA , . The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A : the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation.
Probab=22.19  E-value=58  Score=13.96  Aligned_cols=130  Identities=22%  Similarity=0.162  Sum_probs=68.1

Q ss_pred             EEEEECCCCHHHHHHHHHHCCC-C-CCEEEEEECC--CCCC-----CCCCC--EEEECCCCHHHHHHHHHHHCCCCCCEE
Q ss_conf             8885045530689999970687-8-8327864112--1333-----46981--783011220799999997313887489
Q gi|254780313|r   71 IVDLGSSPGSWSQVAARITGSN-A-NNTRVVAIDI--LDME-----PILGV--KFFKFDFLDLDSWEFIRQAIGGNPDLV  139 (227)
Q Consensus        71 VlDLGaaPGgWsQva~~~~~~~-~-~~~~VigVDl--~~~~-----~i~gv--~~~~gDi~~~~~~~~i~~~l~~~~DlV  139 (227)
                      ++||.|+=||.-.= -+.++.. + .--.|++.++  .+-.     ..-+.  .+..+||++.+.-+.++...-..+|++
T Consensus         1 ~idLFaGiGG~rlG-fe~~g~~l~~~~~~V~~sE~PRdk~A~~tY~~Nf~~~~~~~~~DI~~i~~~~~~~~~~~Pd~D~L   79 (425)
T TIGR00675         1 VIDLFAGIGGIRLG-FEQAGKELTVAFKCVFASEIPRDKYAQKTYEANFGNDEKVPFGDITKISPSDLLRHIAIPDFDIL   79 (425)
T ss_pred             CEEEECCCCHHHHH-HHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf             94542551357899-99741014111378872016687789999997647884206776333660115001248867899


Q ss_pred             EECCCHHH-----CCCCC----CH--HHHHHHHHHHHHHHHHHCCCCCCEEE------EEEEC---CCCHHHHHHHHHHH
Q ss_conf             75320211-----02221----01--57889899988987641148774699------99305---99989999999862
Q gi|254780313|r  140 LSDMAYPT-----IGHRK----ID--HLRTMSLCEAATFFALEMLNIGGDFL------VKTFQ---GGTTNDILCLLKKH  199 (227)
Q Consensus       140 lSDmapn~-----SG~~~----~D--~~~~~~L~~~al~~A~~~Lk~gG~fV------~K~F~---G~~~~~l~~~l~~~  199 (227)
                      |+  +|.|     .|...    .+  ..| =.|......+ ++.=+|..-|+      +.-=.   |..+.-+++.|...
T Consensus        80 ~g--GFPCQ~FS~AG~~~~~~GF~dED~R-GtLFFe~~Ri-lK~KkP~~FllENVkgL~~hd~~~~G~Tf~vI~~~Le~l  155 (425)
T TIGR00675        80 LG--GFPCQPFSIAGKRKGELGFEDEDTR-GTLFFEIVRI-LKEKKPKFFLLENVKGLVSHDKSQRGRTFKVIIETLEEL  155 (425)
T ss_pred             EC--CCCCCHHHHHCCCCCCCCCCCCCCC-CCHHHHHHHH-HHHCCCCEEEEECCCHHCCCCCCCCCCHHHHHHHHHHHC
T ss_conf             63--8997134464116766886566777-7528998999-985189578844361101788613452789999999873


Q ss_pred             CCEEEE
Q ss_conf             584699
Q gi|254780313|r  200 FQKVIH  205 (227)
Q Consensus       200 F~~V~~  205 (227)
                      =.+|..
T Consensus       156 GY~v~~  161 (425)
T TIGR00675       156 GYKVEY  161 (425)
T ss_pred             CCEEEH
T ss_conf             887733


No 405
>pfam04734 Ceramidase_alk Neutral/alkaline non-lysosomal ceramidase. This family represents a group of neutral/alkaline ceramidases found in both bacteria and eukaryotes.
Probab=22.05  E-value=60  Score=13.85  Aligned_cols=34  Identities=12%  Similarity=0.191  Sum_probs=21.4

Q ss_pred             HHHHCCCCCCCCEEE----EEECCCCHHHHHHHHHHCC
Q ss_conf             986458313796788----8504553068999997068
Q gi|254780313|r   58 INEKHQILQSNRRIV----DLGSSPGSWSQVAARITGS   91 (227)
Q Consensus        58 Id~kf~l~k~g~~Vl----DLGaaPGgWsQva~~~~~~   91 (227)
                      |.++|.=+-.-.+|+    +-=++||||+||....+..
T Consensus        75 L~~~~g~lY~~~NV~isgTHTHsgPgG~~~~~ly~its  112 (671)
T pfam04734        75 LKARYGDLYTEQNVALSGTHTHAGPGGYLHYLLYQITS  112 (671)
T ss_pred             HHHHHCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCC
T ss_conf             87651565562448998654477763203444310356


No 406
>pfam11968 DUF3321 Protein of unknown function (DUF3321). This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=21.85  E-value=61  Score=13.82  Aligned_cols=114  Identities=18%  Similarity=0.225  Sum_probs=58.4

Q ss_pred             CEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHC
Q ss_conf             67888504553068999997068788327864112133346981783011220799999997313887489753202110
Q gi|254780313|r   69 RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTI  148 (227)
Q Consensus        69 ~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDmapn~S  148 (227)
                      .++||+||=--   +-++...+   . -.|..|||..-+|  +  ..+-||++....    ..-..+||+|-+-+--|+-
T Consensus        54 lr~LEVGALst---~N~~S~~~---~-~dv~rIDLnSq~p--~--I~qqDFmerPlP----~~e~e~F~iISlSLVLNfV  118 (220)
T pfam11968        54 LRALEVGALST---KNACSKSG---L-FDVTRIDLNSQEP--G--ILQQDFMERPLP----KDESEKFDIISLSLVLNFV  118 (220)
T ss_pred             CEEEEECCCCC---CCHHCCCC---E-EEEEEEECCCCCC--C--CHHHHHHHCCCC----CCCCCCCCEEEEEEEEECC
T ss_conf             31775545564---21222567---4-7778852589998--7--144324407788----8831141358887777416


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHCCCCCCE------EEEE----EECC--CCHHHHHHHHHHH-CCEEEE
Q ss_conf             222101578898999889876411487746------9999----3059--9989999999862-584699
Q gi|254780313|r  149 GHRKIDHLRTMSLCEAATFFALEMLNIGGD------FLVK----TFQG--GTTNDILCLLKKH-FQKVIH  205 (227)
Q Consensus       149 G~~~~D~~~~~~L~~~al~~A~~~Lk~gG~------fV~K----~F~G--~~~~~l~~~l~~~-F~~V~~  205 (227)
                      .    |...-=++    |.-+..+|+|+|.      |++=    +-.+  -+.+.|.+.|... |..|+.
T Consensus       119 P----~~~~RGeM----L~r~~~fL~~~~~~~~~~lFlVLPlpCv~NSRY~~~~~l~~im~slGf~~~~~  180 (220)
T pfam11968       119 P----DPADRGEM----LKRTTKFLRPPGPGSPPSLFLVLPLPCVTNSRYMDEERLQAIMSSLGFVLVKS  180 (220)
T ss_pred             C----CHHHHHHH----HHHHHHHHCCCCCCCCCEEEEEEEHHHHHCCCCCCHHHHHHHHHHCCCEEEEE
T ss_conf             9----87888699----99999971799766663268873245640440019999999999679558876


No 407
>PRK08628 short chain dehydrogenase; Provisional
Probab=21.74  E-value=61  Score=13.81  Aligned_cols=111  Identities=10%  Similarity=0.074  Sum_probs=58.2

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC---------CCCCCCEEEECCCCHHHHHHHHH----HHCC
Q ss_conf             7967888504553068999997068788327864112133---------34698178301122079999999----7313
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM---------EPILGVKFFKFDFLDLDSWEFIR----QAIG  133 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~---------~~i~gv~~~~gDi~~~~~~~~i~----~~l~  133 (227)
                      .|.++|=-|++-| -=.-+++.....|.  .|+-+|..+-         ..-..+.++++|+++++..+.+.    +.+ 
T Consensus         6 ~gKvalVTG~s~G-IG~a~a~~la~~Ga--~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~v~~~~~~~-   81 (258)
T PRK08628          6 KDKVVIVTGGASG-IGAAISLRLAEEGA--IPVVFGRSAPDDEFAEELRALQPRAEFVQVDLQDDAQCRDAVAQTVAKF-   81 (258)
T ss_pred             CCCEEEEECCCCH-HHHHHHHHHHHCCC--EEEEEECCCCHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHH-
T ss_conf             9998999277778-99999999998799--8999808802399999999539978999952799999999999999982-


Q ss_pred             CCCCEEEECCCHHHCCCCCCHH---HHHHHHHHH----HHHHHHHCCCCC-CEEEE
Q ss_conf             8874897532021102221015---788989998----898764114877-46999
Q gi|254780313|r  134 GNPDLVLSDMAYPTIGHRKIDH---LRTMSLCEA----ATFFALEMLNIG-GDFLV  181 (227)
Q Consensus       134 ~~~DlVlSDmapn~SG~~~~D~---~~~~~L~~~----al~~A~~~Lk~g-G~fV~  181 (227)
                      ++.|+++.-.+.+-....+.+.   .+.+++...    ....+...|+.+ |..|.
T Consensus        82 g~iDiLVnnAGi~~~~~~e~~~e~~~~~~~~Nl~~~~~l~~~~~p~l~~~~GsIIn  137 (258)
T PRK08628         82 GRIDGLVNNAGVNDGVGLDAGRDAFVASLERNLIHYYVMAHYCLPHLKASRGAIVN  137 (258)
T ss_pred             CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf             99889998882278877789999999999987499999999999988854954999


No 408
>PRK07576 short chain dehydrogenase; Provisional
Probab=21.66  E-value=61  Score=13.80  Aligned_cols=76  Identities=14%  Similarity=0.106  Sum_probs=44.9

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CCC-CCCCEEEECCCCHHHHHHHH----HHHC
Q ss_conf             796788850455306899999706878832786411213---------334-69817830112207999999----9731
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------MEP-ILGVKFFKFDFLDLDSWEFI----RQAI  132 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~~-i~gv~~~~gDi~~~~~~~~i----~~~l  132 (227)
                      .|.++|=.|++-| -=..+++.....|-  +|+-.|..+         +.+ -..+.++++|+++.+..+.+    .+.+
T Consensus         7 ~gK~alVTGgs~G-IG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~   83 (260)
T PRK07576          7 AGKNVFVVGGTSG-INLGIAQAFARAGA--NVAVASRSQEKVDAAVAQLQQAGPEALGVSADVRDYAAVEAAFAAIADEF   83 (260)
T ss_pred             CCCEEEEECCCCH-HHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHH
T ss_conf             8998999589619-99999999998799--99999798899999999999539948999931899999999999999984


Q ss_pred             CCCCCEEEECCCHH
Q ss_conf             38874897532021
Q gi|254780313|r  133 GGNPDLVLSDMAYP  146 (227)
Q Consensus       133 ~~~~DlVlSDmapn  146 (227)
                       ++.|++++-.+.+
T Consensus        84 -G~iDiLVnnAg~~   96 (260)
T PRK07576         84 -GPIDVLVSGAAGN   96 (260)
T ss_pred             -CCCCEEEECCCCC
T ss_conf             -9998999898678


No 409
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase; InterPro: IPR013445    This entry contains CDP-glucose 4,6-dehydratases from a variety of Gram-negative and Gram-positive bacteria. Members are typically encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate CDP-D-glucose. This is used by the proteins in this entry to produce CDP-4-keto-6-deoxyglucose..
Probab=21.56  E-value=62  Score=13.79  Aligned_cols=60  Identities=18%  Similarity=0.153  Sum_probs=37.0

Q ss_pred             CCHHHHHHHHHHCCCCCCEEEEEECCCCCCCC---------CCC------EEEECCCCHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf             53068999997068788327864112133346---------981------783011220799999997313887489753
Q gi|254780313|r   78 PGSWSQVAARITGSNANNTRVVAIDILDMEPI---------LGV------KFFKFDFLDLDSWEFIRQAIGGNPDLVLSD  142 (227)
Q Consensus        78 PGgWsQva~~~~~~~~~~~~VigVDl~~~~~i---------~gv------~~~~gDi~~~~~~~~i~~~l~~~~DlVlSD  142 (227)
                      =|||+-+=...+|.     .|.|.=|.|-..+         ...      ..+.|||+|.+....+...+  ++|+|.+=
T Consensus        16 KGSWL~lWL~~lGA-----~V~GYSL~P~t~PnlFe~l~l~~~~~~~Wyf~~~~gDIrD~~~L~~~~~~~--~PeIvFHl   88 (361)
T TIGR02622        16 KGSWLSLWLLELGA-----EVAGYSLDPPTSPNLFELLNLAKKIKDSWYFSSIFGDIRDAAKLEKAIAEF--KPEIVFHL   88 (361)
T ss_pred             CHHHHHHHHHHCCC-----EEEEEECCCCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCHHHHHHHHHHC--CCCEEEHH
T ss_conf             25589999984796-----798971688788405557525424323505542330323278999999972--89898333


Q ss_pred             CC
Q ss_conf             20
Q gi|254780313|r  143 MA  144 (227)
Q Consensus       143 ma  144 (227)
                      +|
T Consensus        89 AA   90 (361)
T TIGR02622        89 AA   90 (361)
T ss_pred             HH
T ss_conf             54


No 410
>PRK07024 short chain dehydrogenase; Provisional
Probab=21.42  E-value=62  Score=13.77  Aligned_cols=74  Identities=16%  Similarity=0.222  Sum_probs=44.0

Q ss_pred             CEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCC--CC----CCC--CCCEEEECCCCHHHHHHHHHHHCC---CCCC
Q ss_conf             678885045530689999970687883278641121--33----346--981783011220799999997313---8874
Q gi|254780313|r   69 RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL--DM----EPI--LGVKFFKFDFLDLDSWEFIRQAIG---GNPD  137 (227)
Q Consensus        69 ~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~--~~----~~i--~gv~~~~gDi~~~~~~~~i~~~l~---~~~D  137 (227)
                      ++||=.||+-|==-+.|.+.. ..|.  +|+.++..  ..    +.+  .++..+..|+++.+..+.+.+.+.   +..|
T Consensus         3 ~~VlITGassGIG~a~A~~la-~~G~--~v~l~~R~~~~L~~~~~~~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~iD   79 (256)
T PRK07024          3 LKVFITGASSGIGQALAREYA-RQGA--TLGLVARRTDALQAFAARLPKARVSVYAADVRDADALAAAAADFIAAHGCPD   79 (256)
T ss_pred             CEEEEECCCHHHHHHHHHHHH-HCCC--EEEEEECCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCC
T ss_conf             989998460299999999999-8899--8999989889999999976799769998117999999999999999839987


Q ss_pred             EEEECCCH
Q ss_conf             89753202
Q gi|254780313|r  138 LVLSDMAY  145 (227)
Q Consensus       138 lVlSDmap  145 (227)
                      +++.-.+.
T Consensus        80 ilinNAGi   87 (256)
T PRK07024         80 VVIANAGI   87 (256)
T ss_pred             EEEECCCC
T ss_conf             99988855


No 411
>PRK11519 tyrosine kinase; Provisional
Probab=21.34  E-value=62  Score=13.76  Aligned_cols=82  Identities=18%  Similarity=0.179  Sum_probs=46.6

Q ss_pred             CCCCEEEEEECCCC-HHHHHHHHH---HCCCCCCEEEEEECCCC--------CCC----------------------CCC
Q ss_conf             37967888504553-068999997---06878832786411213--------334----------------------698
Q gi|254780313|r   66 QSNRRIVDLGSSPG-SWSQVAARI---TGSNANNTRVVAIDILD--------MEP----------------------ILG  111 (227)
Q Consensus        66 k~g~~VlDLGaaPG-gWsQva~~~---~~~~~~~~~VigVDl~~--------~~~----------------------i~g  111 (227)
                      +++..|+=-.+.|| |-|-+++.+   ....|.+..+|..|+..        ..+                      ++|
T Consensus       524 ~~~~vi~vTS~~pgEGKSt~a~nLA~~~A~~G~rvLLID~DlRrp~l~~~~~~~~~~GLs~~L~g~~~~~~~i~~~~~~~  603 (720)
T PRK11519        524 AQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSEILIGQGDITTAAKPTSIAN  603 (720)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHCCCCCCCCHHHHCCCCCCHHHHCCCCCCCC
T ss_conf             88767999708999978999999999998379919999387777016775399999985998079997899703579899


Q ss_pred             CEEEE-CC-------CCHHHHHHHHHHHCCCCCCEEEECCCHHH
Q ss_conf             17830-11-------22079999999731388748975320211
Q gi|254780313|r  112 VKFFK-FD-------FLDLDSWEFIRQAIGGNPDLVLSDMAYPT  147 (227)
Q Consensus       112 v~~~~-gD-------i~~~~~~~~i~~~l~~~~DlVlSDmapn~  147 (227)
                      ..++. |-       +........+.+.+...+|.|+=|.+|=.
T Consensus       604 l~vl~~G~~~pnp~elL~s~~~~~ll~~l~~~yD~IIiDtpPv~  647 (720)
T PRK11519        604 FDLIPRGQVPPNPSELLMSERFAELVAWASKNYDLVLIDTPPIL  647 (720)
T ss_pred             EEEECCCCCCCCHHHHHCCHHHHHHHHHHHHHCCEEEEECCCCC
T ss_conf             89976999994989983875999999999852999999399965


No 412
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=21.32  E-value=62  Score=13.76  Aligned_cols=82  Identities=16%  Similarity=0.203  Sum_probs=48.1

Q ss_pred             HHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CCCC-CCCEEEECCCCHHHHHHHH
Q ss_conf             86458313796788850455306899999706878832786411213---------3346-9817830112207999999
Q gi|254780313|r   59 NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------MEPI-LGVKFFKFDFLDLDSWEFI  128 (227)
Q Consensus        59 d~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~~i-~gv~~~~gDi~~~~~~~~i  128 (227)
                      ++-|+|  .|.++|=-|++-| -=.-+++.....|-  +|+-.|..+         ++.. ..+..+++|+++.+..+.+
T Consensus         3 ~~~f~l--~gK~alVTG~s~G-IG~aiA~~la~~Ga--~Vii~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~   77 (265)
T PRK07097          3 ENMFSL--KGKIALITGASYG-IGFAIAKAYAEAGA--TIVFNDIKQELVDKGLAAYRELGIEAHGYVCDVTDEDGIQAM   77 (265)
T ss_pred             CCCCCC--CCCEEEEECCCCH-HHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHH
T ss_conf             404198--9998999585768-99999999998699--999995998999999999995499179999328999999999


Q ss_pred             HHHCC---CCCCEEEECCCH
Q ss_conf             97313---887489753202
Q gi|254780313|r  129 RQAIG---GNPDLVLSDMAY  145 (227)
Q Consensus       129 ~~~l~---~~~DlVlSDmap  145 (227)
                      .+...   ++.|+++.-.+-
T Consensus        78 ~~~~~~~~g~iDiLVnNAG~   97 (265)
T PRK07097         78 VAQIEKEVGVIDILVNNAGI   97 (265)
T ss_pred             HHHHHHHCCCCCEEEECCCC
T ss_conf             99999982999899989989


No 413
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=21.14  E-value=62  Score=13.77  Aligned_cols=38  Identities=8%  Similarity=-0.100  Sum_probs=16.7

Q ss_pred             HHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCH
Q ss_conf             88184479999999998645831379678885045530
Q gi|254780313|r   43 QLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS   80 (227)
Q Consensus        43 k~~gyrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGg   80 (227)
                      +++||..-.|.--.|-.+.+.--.+.-.|||++--.+.
T Consensus        22 ~~~g~~v~~a~~g~~a~~~~~~~~~DlvilDi~LP~~d   59 (240)
T PRK10701         22 AKHDIDVTVEPRGDRAEETILREQPDLVLLDIMLPGKD   59 (240)
T ss_pred             HHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf             88799999989999999998617999999928997678


No 414
>KOG0229 consensus
Probab=21.01  E-value=61  Score=13.81  Aligned_cols=43  Identities=21%  Similarity=0.437  Sum_probs=30.8

Q ss_pred             EEEEEEECCCCHHHHHHHHHHHCCE---------------EEEECCCCCCCCCCEEEEEECC
Q ss_conf             6999930599989999999862584---------------6997686657558249898307
Q gi|254780313|r  178 DFLVKTFQGGTTNDILCLLKKHFQK---------------VIHVKPVASRAESVEMFLLAKG  224 (227)
Q Consensus       178 ~fV~K~F~G~~~~~l~~~l~~~F~~---------------V~~~KP~aSR~~S~E~Ylv~~g  224 (227)
                      .||+|..+.++...+.+.|..+++.               ++.+||..    +.++|+|-.+
T Consensus       152 rFiIKTv~~~E~~~l~~mLp~Yy~~v~~~~~~TLl~kf~Gly~vk~~g----g~k~yfvVM~  209 (420)
T KOG0229         152 RFIIKTVRKSEVKVLLKMLPGYYQHVVEQNNRTLLPKFFGLYRVKPDG----GKKIYFVVMN  209 (420)
T ss_pred             EEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHCCEEEEEECC----CCEEEEEEEC
T ss_conf             289985348899999998788889986269974460021047986169----8279999964


No 415
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=21.01  E-value=63  Score=13.72  Aligned_cols=40  Identities=25%  Similarity=0.246  Sum_probs=25.1

Q ss_pred             HHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC
Q ss_conf             99998818447999999999864583137967888504553
Q gi|254780313|r   39 VQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPG   79 (227)
Q Consensus        39 ~~~Ak~~gyrsRaafKL~eId~kf~l~k~g~~VlDLGaaPG   79 (227)
                      ...=+.+||..-.+.--.|..+.+.-..+.-.+||++ -|+
T Consensus        20 ~~~L~~~g~~v~~~~~~~~al~~~~~~~~DlvilDi~-LP~   59 (229)
T PRK11083         20 VYALQSEGFTVEWFERGLPALDKLRQQPPDLVILDVG-LPD   59 (229)
T ss_pred             HHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCC-CCC
T ss_conf             9999988999999899999999997189989997388-999


No 416
>PRK07890 short chain dehydrogenase; Provisional
Probab=20.88  E-value=64  Score=13.70  Aligned_cols=110  Identities=15%  Similarity=0.109  Sum_probs=56.5

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCC--C-------CCCC-CCCEEEECCCCHHHHHHHH----HHHC
Q ss_conf             79678885045530689999970687883278641121--3-------3346-9817830112207999999----9731
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL--D-------MEPI-LGVKFFKFDFLDLDSWEFI----RQAI  132 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~--~-------~~~i-~gv~~~~gDi~~~~~~~~i----~~~l  132 (227)
                      .|.++|=-|++-| -=.-+++.....|.  +|+-.|..  .       +... ..+.++++|+++.+..+.+    .+.+
T Consensus         4 ~gK~alVTG~s~G-IG~aia~~la~~Ga--~V~i~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~~~~~v~~~~~~f   80 (258)
T PRK07890          4 KDKVVVVSGVGPG-LGTTLAVRAAREGA--DVVLAARTAERLDEVAKQIDDLGRRALAVVTDITDEAQVANLVDAALERF   80 (258)
T ss_pred             CCCEEEEECCCCH-HHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf             9988999685658-99999999998799--89999798999999999999649958999816999999999999999984


Q ss_pred             CCCCCEEEECCCH--HHCCCCCCHHH---HHHHHHHHH----HHHHHHCCC-CCCEEE
Q ss_conf             3887489753202--11022210157---889899988----987641148-774699
Q gi|254780313|r  133 GGNPDLVLSDMAY--PTIGHRKIDHL---RTMSLCEAA----TFFALEMLN-IGGDFL  180 (227)
Q Consensus       133 ~~~~DlVlSDmap--n~SG~~~~D~~---~~~~L~~~a----l~~A~~~Lk-~gG~fV  180 (227)
                       ++.|+++.-.+.  ......+.|..   ..++++...    ...+...|+ .||..|
T Consensus        81 -G~iDiLVnnAg~~~~~~~~~~~~~e~~~~~~~~nl~~~~~~~k~~~p~m~~~~G~IV  137 (258)
T PRK07890         81 -GRVDVLVNNAFRVPSMKPLAGADFDHWRDVIETNVLGTLRLTQAFTPALAESGGSVV  137 (258)
T ss_pred             -CCCCEEEECCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf             -999899986866789998002999999999998759999999988999997698599


No 417
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=20.77  E-value=64  Score=13.68  Aligned_cols=114  Identities=15%  Similarity=0.207  Sum_probs=58.6

Q ss_pred             CCCEEEEEECCCC-HHHHHHHHHHCCCCCCEEEEEECCC-----------CC-CCCCCCEEEECCCCHHHHHHHHHHHCC
Q ss_conf             7967888504553-0689999970687883278641121-----------33-346981783011220799999997313
Q gi|254780313|r   67 SNRRIVDLGSSPG-SWSQVAARITGSNANNTRVVAIDIL-----------DM-EPILGVKFFKFDFLDLDSWEFIRQAIG  133 (227)
Q Consensus        67 ~g~~VlDLGaaPG-gWsQva~~~~~~~~~~~~VigVDl~-----------~~-~~i~gv~~~~gDi~~~~~~~~i~~~l~  133 (227)
                      .|.++|=.|++-| |--.-+++.....|-  +|+-.|+.           .+ ++...+.++++|+++++..+.+.+...
T Consensus         6 ~GK~alVTGaag~~GiG~aia~~la~~GA--~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~   83 (259)
T PRK07370          6 TGKKALVTGIANNRSIAWGIAQQLHAAGA--ELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCNVQDDAQIEEVFETIK   83 (259)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHCCC--EEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHH
T ss_conf             99989997989985799999999998699--9999947870135899999998412864899912899999999999999


Q ss_pred             ---CCCCEEEECCCHH----HCCC-CCC---HHHHHHHHHHHH----HHHHHHCCCCCCEEEEE
Q ss_conf             ---8874897532021----1022-210---157889899988----98764114877469999
Q gi|254780313|r  134 ---GNPDLVLSDMAYP----TIGH-RKI---DHLRTMSLCEAA----TFFALEMLNIGGDFLVK  182 (227)
Q Consensus       134 ---~~~DlVlSDmapn----~SG~-~~~---D~~~~~~L~~~a----l~~A~~~Lk~gG~fV~K  182 (227)
                         ++.|+++.-.+..    ..|. .++   |-.+.+++....    ...+...++++|..|.=
T Consensus        84 ~~~G~iDilVnna~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~g~Ii~i  147 (259)
T PRK07370         84 QKWGQLDILVHCLAFAGKEELSGDFSATSREGFARALEISAYSLAPLCRAAKPLMSEGGSIVTL  147 (259)
T ss_pred             HHHCCCCEEEEEECCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf             9858987798630114643367992559999999999998799999999998860458853127


No 418
>COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]
Probab=20.51  E-value=44  Score=14.69  Aligned_cols=115  Identities=17%  Similarity=0.130  Sum_probs=55.1

Q ss_pred             HHHHHHCCCCCCEEEEEECC--------------CCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCC
Q ss_conf             99997068788327864112--------------1333469817830112207999999973138874897532021102
Q gi|254780313|r   84 VAARITGSNANNTRVVAIDI--------------LDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIG  149 (227)
Q Consensus        84 va~~~~~~~~~~~~VigVDl--------------~~~~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDmapn~SG  149 (227)
                      |.+++.-+.|.  .|.|+.-              .+....+..+++.||.+|..+...+.+..  .+|-|-.=+|...-|
T Consensus        17 YLa~lLLekGY--~VhGi~Rrss~~n~~ri~L~~~~~~~~~~l~l~~gDLtD~~~l~r~l~~v--~PdEIYNLaAQS~V~   92 (345)
T COG1089          17 YLAELLLEKGY--EVHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLHYGDLTDSSNLLRILEEV--QPDEIYNLAAQSHVG   92 (345)
T ss_pred             HHHHHHHHCCC--EEEEEEECCCCCCCCCCHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHC--CCHHHEECCCCCCCC
T ss_conf             99999985694--89878603355776530111165557861799965543568899999860--944533034323455


Q ss_pred             C--------CCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHCCEEEEECCCC
Q ss_conf             2--------210157889899988987641148774699993059998999999986258469976866
Q gi|254780313|r  150 H--------RKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVA  210 (227)
Q Consensus       150 ~--------~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~~~F~~V~~~KP~a  210 (227)
                      .        -++|......|.++     .+.|.   .-=++++|.+..+.|=.....--++-..|.|.|
T Consensus        93 vSFe~P~~T~~~~~iGtlrlLEa-----iR~~~---~~~~rfYQAStSE~fG~v~~~pq~E~TPFyPrS  153 (345)
T COG1089          93 VSFEQPEYTADVDAIGTLRLLEA-----IRILG---EKKTRFYQASTSELYGLVQEIPQKETTPFYPRS  153 (345)
T ss_pred             CCCCCCCEEEEECHHHHHHHHHH-----HHHHC---CCCCEEEECCCHHHHCCCCCCCCCCCCCCCCCC
T ss_conf             30358640253100678899999-----99748---766079965617760676667544689998897


No 419
>PRK12937 short chain dehydrogenase; Provisional
Probab=20.49  E-value=65  Score=13.65  Aligned_cols=112  Identities=18%  Similarity=0.104  Sum_probs=59.3

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC----------CC-CCCCCEEEECCCCHHHHHHHHHHHCC--
Q ss_conf             796788850455306899999706878832786411213----------33-46981783011220799999997313--
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD----------ME-PILGVKFFKFDFLDLDSWEFIRQAIG--  133 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~----------~~-~i~gv~~~~gDi~~~~~~~~i~~~l~--  133 (227)
                      .|.++|=-|++-| -=.-+++.....|.  .|+-.+...          ++ .-..+..+++|+.+.+..+.+.+...  
T Consensus         4 sgK~alVTGgs~G-IG~aia~~la~~Ga--~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~v~~~~~~   80 (245)
T PRK12937          4 SNKVAIVTGASRG-IGAAIARRLAADGF--AVAVNYAGSAAMADELVEEIEAAGGRAIAVQADVADAAAVDRLFEAAETA   80 (245)
T ss_pred             CCCEEEEECCCCH-HHHHHHHHHHHCCC--EEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf             9988999485778-99999999998799--99997699868999999999965995899983789999999999999998


Q ss_pred             -CCCCEEEECCCHHHCCC-CCC---HHHHHHHHHHHH----HHHHHHCCCCCCEEEE
Q ss_conf             -88748975320211022-210---157889899988----9876411487746999
Q gi|254780313|r  134 -GNPDLVLSDMAYPTIGH-RKI---DHLRTMSLCEAA----TFFALEMLNIGGDFLV  181 (227)
Q Consensus       134 -~~~DlVlSDmapn~SG~-~~~---D~~~~~~L~~~a----l~~A~~~Lk~gG~fV~  181 (227)
                       ++.|+++.-.+....+. .+.   |-.+.++++...    +..+...|+++|..|.
T Consensus        81 ~g~iDilVnNAg~~~~~~~~~~~~e~w~~~~~vNl~~~~~~~~~~~~~m~~~G~IIn  137 (245)
T PRK12937         81 FGRIDVLVNSAGIMPLAPIADGDLEGFDRTIAVNLRGAFNVLGEAARHLRRGGRIIN  137 (245)
T ss_pred             HCCCCEEEEECCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf             199889998054899988134999999999999859999999999999972882999


No 420
>pfam03269 DUF268 Caenorhabditis protein of unknown function, DUF268.
Probab=20.41  E-value=65  Score=13.64  Aligned_cols=126  Identities=16%  Similarity=0.171  Sum_probs=65.1

Q ss_pred             CCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCC----CCCEEEECCCCHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf             967888504553068999997068788327864112133346----9817830112207999999973138874897532
Q gi|254780313|r   68 NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPI----LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDM  143 (227)
Q Consensus        68 g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~i----~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDm  143 (227)
                      |..+|=+|+ ---|.++.+-..|++    .|+-|+.+..+-.    +.+..    |.-.+..+.... ..+.||.++|=-
T Consensus         2 gk~glVvGS-~~PWvE~~aL~~GA~----~vlTvEYn~l~i~~~~~~rlss----i~p~ef~~~~~~-~~~~FD~a~SfS   71 (177)
T pfam03269         2 GKSGVVIGS-MQPWVEVSALQNGAS----KILTVEYNKLTIQEEFRDRLSS----ILPTDFAKNFKK-YAESFDFAASFS   71 (177)
T ss_pred             CCEEEEECC-CCHHHHHHHHHCCCC----CEEEEEECCCCCCCHHHHCCCC----CCHHHHHHHHHH-HCCCEEEEEEEE
T ss_conf             951899847-753999999981887----3489972355566133210011----568899999875-235323899961


Q ss_pred             CHHHCCCCC----CHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHH----------HHHHHHHCCEEEEEC
Q ss_conf             021102221----0157889899988987641148774699993059998999----------999986258469976
Q gi|254780313|r  144 AYPTIGHRK----IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI----------LCLLKKHFQKVIHVK  207 (227)
Q Consensus       144 apn~SG~~~----~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l----------~~~l~~~F~~V~~~K  207 (227)
                      +..-+|..-    +|...-    ..++.-...+|++||.|.+-+=-|.+...+          +..|-.-|+-+-.|-
T Consensus        72 SiEH~GLGRYGDpidp~Gd----lk~m~~i~~~Lk~~G~l~l~vPiG~d~v~fN~HRiYG~~Rl~~m~~Gfewi~tfs  145 (177)
T pfam03269        72 SIEHSGLGRYGDPIDPIGD----LREMLKIKCVLKKGGLLFLGLPLGTDAIIFNAHRIYGSVRLAMMMYGFEWIDTFS  145 (177)
T ss_pred             EEEECCCCCCCCCCCCCCC----HHHHHHHHHHHCCCCEEEEEECCCCCCEEEECCEEECHHHHHHHHCCCEEEEECC
T ss_conf             2444056556897798510----9999999986178967999953777616870340234668899864846654417


No 421
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family; InterPro: IPR014188   This entry represents a subfamily of the alcohol dehydrogenase, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This entry includes YhdH from Escherichia coli and YhfP from Bacillus subtilis both of which bind NADPH or NAD, but not zinc. Both proteins have been studied crystallographically for insight into function. .
Probab=20.41  E-value=34  Score=15.39  Aligned_cols=22  Identities=23%  Similarity=0.382  Sum_probs=13.6

Q ss_pred             CCCCCCEEEEEEC-----CCCHHHHHH
Q ss_conf             3137967888504-----553068999
Q gi|254780313|r   64 ILQSNRRIVDLGS-----SPGSWSQVA   85 (227)
Q Consensus        64 l~k~g~~VlDLGa-----aPGgWsQva   85 (227)
                      -|++|+.||=-|.     ..||++|||
T Consensus        77 ~F~~GD~VivTGyglG~~H~GGysqya  103 (330)
T TIGR02823        77 RFRPGDEVIVTGYGLGVSHDGGYSQYA  103 (330)
T ss_pred             CCCCCCEEEEEEECCCCCCCCCCEEEE
T ss_conf             757887189974024565157622356


No 422
>KOG3201 consensus
Probab=20.35  E-value=65  Score=13.63  Aligned_cols=119  Identities=19%  Similarity=0.215  Sum_probs=55.6

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEE-CC----CCH-----HHHHHHHHHHCCCCC
Q ss_conf             79678885045530689999970687883278641121333469817830-11----220-----799999997313887
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFK-FD----FLD-----LDSWEFIRQAIGGNP  136 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~i~gv~~~~-gD----i~~-----~~~~~~i~~~l~~~~  136 (227)
                      .|..|++||   ||++-.|.-.+.-.....-|.--|-. ++.+.+|.-+. -+    ++.     -.............|
T Consensus        29 rg~~ilelg---ggft~laglmia~~a~~~~v~ltdgn-e~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tF  104 (201)
T KOG3201          29 RGRRILELG---GGFTGLAGLMIACKAPDSSVWLTDGN-EESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTF  104 (201)
T ss_pred             HHHHHHHHC---CCHHHHHHHHEEEECCCCEEEEECCC-HHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHCCC
T ss_conf             678898726---74465545520453587358871697-89999799998512002565000347877644888751702


Q ss_pred             CEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEE-EEEEECCCCHHHHHHHHHHHC
Q ss_conf             4897532021102221015788989998898764114877469-999305999899999998625
Q gi|254780313|r  137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF-LVKTFQGGTTNDILCLLKKHF  200 (227)
Q Consensus       137 DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~f-V~K~F~G~~~~~l~~~l~~~F  200 (227)
                      |.|++-   ++.   ..|+.+     .+..+..-..|+|.|.- +.---+|...+.|.+.+...-
T Consensus       105 DiIlaA---DCl---FfdE~h-----~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de~~~~g  158 (201)
T KOG3201         105 DIILAA---DCL---FFDEHH-----ESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDEVGTVG  158 (201)
T ss_pred             CEEEEC---CCH---HHHHHH-----HHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCE
T ss_conf             279860---102---588999-----999999999858466616766755556999999987540


No 423
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=20.27  E-value=65  Score=13.62  Aligned_cols=112  Identities=13%  Similarity=0.128  Sum_probs=57.7

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CCC-CCCCEEEECCCCHHHHHHHHHHHCC---
Q ss_conf             796788850455306899999706878832786411213---------334-6981783011220799999997313---
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------MEP-ILGVKFFKFDFLDLDSWEFIRQAIG---  133 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~~-i~gv~~~~gDi~~~~~~~~i~~~l~---  133 (227)
                      .|.++|=.|++-| -=.-+++.....|.  .|+.+|...         ++. -..+.++++|+++++..+.+.+...   
T Consensus         3 ~gK~alITGas~G-IG~aia~~la~~Ga--~V~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~   79 (258)
T PRK12429          3 KGKTALVTGAASG-IGLEIALALAKEGA--KVVIADLNDEAAAKAAEAIKKAGGKAIGVAMDVTDEEAINAGIDKVVETF   79 (258)
T ss_pred             CCCEEEEECCCCH-HHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf             9598999488758-99999999998799--99999798899999999998449918999835899999999999999982


Q ss_pred             CCCCEEEECCCHHHCC-CCCC---HHHHHHHHHHHHH----HHHHHCCC--CCCEEEE
Q ss_conf             8874897532021102-2210---1578898999889----87641148--7746999
Q gi|254780313|r  134 GNPDLVLSDMAYPTIG-HRKI---DHLRTMSLCEAAT----FFALEMLN--IGGDFLV  181 (227)
Q Consensus       134 ~~~DlVlSDmapn~SG-~~~~---D~~~~~~L~~~al----~~A~~~Lk--~gG~fV~  181 (227)
                      ++.|+++.-.+....+ ..+.   |-...++++....    ..+...|+  .+|..|.
T Consensus        80 g~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~~~G~Iv~  137 (258)
T PRK12429         80 GGVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPHMKAQKWGRIIN  137 (258)
T ss_pred             CCCCEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHEEEHHHHHHHHHHCCCCEEEE
T ss_conf             9970999899888998815599999999999762321220067777664359928999


No 424
>PRK07035 short chain dehydrogenase; Provisional
Probab=20.27  E-value=65  Score=13.62  Aligned_cols=77  Identities=12%  Similarity=0.150  Sum_probs=46.7

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CC-CCCCCEEEECCCCHHHHHHHHHHHCC---
Q ss_conf             796788850455306899999706878832786411213---------33-46981783011220799999997313---
Q gi|254780313|r   67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------ME-PILGVKFFKFDFLDLDSWEFIRQAIG---  133 (227)
Q Consensus        67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~-~i~gv~~~~gDi~~~~~~~~i~~~l~---  133 (227)
                      .|.++|=.|++-| -=.-+++.....|.  .|+.+|...         +. .-..+..+++|+.+++..+.+.+...   
T Consensus         7 ~gKvalITGas~G-IG~aia~~la~~Ga--~V~i~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~   83 (252)
T PRK07035          7 TGKIALVTGASRG-IGEAIAKLLAQQGA--HVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAQIRERH   83 (252)
T ss_pred             CCCEEEEECCCCH-HHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf             8998999588749-99999999998799--89999798899999999999649957999824899999999999999982


Q ss_pred             CCCCEEEECCCHH
Q ss_conf             8874897532021
Q gi|254780313|r  134 GNPDLVLSDMAYP  146 (227)
Q Consensus       134 ~~~DlVlSDmapn  146 (227)
                      +++|+++.-.+.+
T Consensus        84 G~iDilVnnAg~~   96 (252)
T PRK07035         84 GRLDILVNNAAAN   96 (252)
T ss_pred             CCCCEEEECCCCC
T ss_conf             9977898768558


No 425
>KOG3115 consensus
Probab=20.11  E-value=52  Score=14.22  Aligned_cols=32  Identities=19%  Similarity=0.236  Sum_probs=22.5

Q ss_pred             CEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCC
Q ss_conf             678885045530689999970687883278641121
Q gi|254780313|r   69 RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL  104 (227)
Q Consensus        69 ~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~  104 (227)
                      --..|+||+=||.+--.+.+.    .+..|+|..|.
T Consensus        62 vefaDIGCGyGGLlv~Lsp~f----PdtLiLGmEIR   93 (249)
T KOG3115          62 VEFADIGCGYGGLLMKLAPKF----PDTLILGMEIR   93 (249)
T ss_pred             CEEEEECCCCCCHHHHCCCCC----CCCEEEEEHHH
T ss_conf             427860467650101205468----63012200126


No 426
>KOG3206 consensus
Probab=20.02  E-value=66  Score=13.58  Aligned_cols=99  Identities=20%  Similarity=0.211  Sum_probs=51.3

Q ss_pred             CCCCCHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCC--------CCCC-----EEEE---EECCCCHHHHH
Q ss_conf             464007999996408999999988184479999999998645831--------3796-----7888---50455306899
Q gi|254780313|r   21 SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL--------QSNR-----RIVD---LGSSPGSWSQV   84 (227)
Q Consensus        21 ~~~~ss~~W~~r~~~D~y~~~Ak~~gyrsRaafKL~eId~kf~l~--------k~g~-----~VlD---LGaaPGgWsQv   84 (227)
                      .++.|-++|+++|.--.|-..-+ ..--+-|.-+|.|+.++-.+-        -||+     +|-=   |-.-||-|+-|
T Consensus       107 qRtdSvr~~kk~~~~gryn~~~~-~q~ea~~~~~~~e~~~~~~i~vG~rCeVtv~G~~~Rrg~vrYvG~~~~k~G~wiGV  185 (234)
T KOG3206         107 QRTDSVRRFKKKHGYGRYNAEEQ-AQAEAEAKQDLAEERAQATIAVGRRCEVTVPGQAPRRGTVRYVGPLEFKPGYWIGV  185 (234)
T ss_pred             HHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCEEEEEECCCCCCCCEEEEE
T ss_conf             65589999999851154341326-58988867779999873005137806895389787514788832468888428877


Q ss_pred             HHHH-HCCCCCCEEEEEECCCCCCCCCCC-----EEEECCCCHH
Q ss_conf             9997-068788327864112133346981-----7830112207
Q gi|254780313|r   85 AARI-TGSNANNTRVVAIDILDMEPILGV-----KFFKFDFLDL  122 (227)
Q Consensus        85 a~~~-~~~~~~~~~VigVDl~~~~~i~gv-----~~~~gDi~~~  122 (227)
                      --.. +|  .++|.|-|+-+-++.|..|-     ..-.||+-+.
T Consensus       186 eydEplG--KnDGsv~G~ryF~c~p~yGgfVrP~~V~Vgdfpee  227 (234)
T KOG3206         186 EYDEPLG--KNDGSVNGKRYFECAPKYGGFVRPRAVTVGDFPEE  227 (234)
T ss_pred             ECCCCCC--CCCCCCCCEEEEECCCCCCCCCCCCEEEECCCCHH
T ss_conf             5477666--67773266686542776687016515662688813


Done!