Query gi|254780313|ref|YP_003064726.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 227
No_of_seqs 152 out of 1749
Neff 6.2
Searched_HMMs 39220
Date Sun May 29 16:04:56 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780313.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11188 rrmJ 23S rRNA methylt 100.0 0 0 547.9 22.6 207 17-226 1-208 (209)
2 TIGR00438 rrmJ ribosomal RNA l 100.0 0 0 520.0 17.1 187 36-225 1-192 (192)
3 COG0293 FtsJ 23S rRNA methylas 100.0 0 0 474.7 21.3 202 23-227 1-203 (205)
4 KOG4589 consensus 100.0 0 0 472.4 18.2 215 10-227 12-228 (232)
5 KOG1099 consensus 100.0 0 0 403.3 14.2 193 34-226 8-206 (294)
6 pfam01728 FtsJ FtsJ-like methy 100.0 0 0 383.7 19.3 175 47-225 1-176 (176)
7 KOG1098 consensus 100.0 0 0 386.6 11.3 191 33-226 10-201 (780)
8 KOG3673 consensus 99.9 5.8E-25 1.5E-29 176.9 8.8 193 34-227 207-446 (845)
9 KOG3674 consensus 99.9 4.8E-23 1.2E-27 164.9 9.8 184 43-226 105-319 (696)
10 PRK11873 arsM arsenite S-adeno 99.3 5E-12 1.3E-16 95.8 7.8 129 63-212 69-231 (258)
11 PRK11933 yebU rRNA (cytosine-C 99.3 3.9E-11 9.9E-16 90.2 12.2 130 65-205 111-267 (471)
12 COG1189 Predicted rRNA methyla 99.3 5.5E-12 1.4E-16 95.6 7.5 157 43-223 55-241 (245)
13 PRK11760 putative RNA 2'-O-rib 99.3 1.2E-11 3.1E-16 93.4 6.4 131 43-201 179-327 (356)
14 PRK01683 trans-aconitate 2-met 99.2 1.7E-10 4.3E-15 86.3 9.5 116 42-184 10-131 (252)
15 PRK10901 16S rRNA methyltransf 99.2 1.9E-10 4.9E-15 85.9 9.8 123 66-199 244-392 (428)
16 COG0144 Sun tRNA and rRNA cyto 99.1 9.8E-10 2.5E-14 81.5 11.6 127 65-200 154-308 (355)
17 PRK08317 hypothetical protein; 99.1 2E-10 5E-15 85.8 7.8 97 65-182 17-123 (241)
18 pfam01189 Nol1_Nop2_Fmu NOL1/N 99.1 2E-09 5E-14 79.6 11.4 126 65-200 82-234 (277)
19 TIGR00446 nop2p NOL1/NOP2/sun 99.0 2.1E-09 5.4E-14 79.4 9.5 129 67-206 77-238 (284)
20 pfam01209 Ubie_methyltran ubiE 99.0 1.9E-09 4.7E-14 79.7 7.9 116 65-201 45-171 (233)
21 PRK00216 ubiE ubiquinone/menaq 99.0 2.8E-09 7.2E-14 78.6 8.5 103 65-188 49-163 (239)
22 TIGR00563 rsmB ribosomal RNA s 98.9 2.8E-09 7.1E-14 78.6 6.7 126 66-197 270-425 (487)
23 TIGR00478 tly hemolysin A; Int 98.9 2.3E-09 5.9E-14 79.1 4.3 101 36-144 44-155 (240)
24 pfam05175 MTS Methyltransferas 98.8 5.6E-08 1.4E-12 70.5 10.8 119 66-207 30-161 (170)
25 PRK10258 biotin biosynthesis p 98.8 3.5E-08 8.8E-13 71.8 9.1 141 37-208 19-167 (251)
26 COG2230 Cfa Cyclopropane fatty 98.8 9.1E-08 2.3E-12 69.1 10.3 112 52-188 58-181 (283)
27 PTZ00098 phosphoethanolamine N 98.8 5.5E-08 1.4E-12 70.5 9.0 132 45-199 30-176 (263)
28 cd02440 AdoMet_MTases S-adenos 98.7 4.1E-08 1E-12 71.3 7.3 94 70-184 1-105 (107)
29 KOG1122 consensus 98.7 8.3E-08 2.1E-12 69.4 8.7 129 66-205 240-395 (460)
30 COG2226 UbiE Methylase involve 98.7 8.1E-08 2.1E-12 69.5 8.4 110 66-197 50-170 (238)
31 pfam02353 CMAS Cyclopropane-fa 98.7 2.2E-07 5.6E-12 66.7 9.7 109 53-186 49-169 (273)
32 TIGR02072 BioC biotin biosynth 98.6 5.8E-08 1.5E-12 70.4 5.7 137 36-197 7-161 (272)
33 KOG2198 consensus 98.6 8.9E-08 2.3E-12 69.2 6.6 153 65-219 153-340 (375)
34 smart00828 PKS_MT Methyltransf 98.5 3E-07 7.7E-12 65.9 6.8 94 69-185 1-106 (224)
35 COG1092 Predicted SAM-dependen 98.5 3.8E-06 9.6E-11 59.0 12.3 123 67-199 217-353 (393)
36 pfam06460 NSP13 Coronavirus NS 98.5 1.9E-06 4.9E-11 60.8 10.7 145 63-225 57-210 (300)
37 pfam07021 MetW Methionine bios 98.5 2.9E-07 7.3E-12 66.0 6.1 77 50-141 1-81 (193)
38 TIGR01934 MenG_MenH_UbiE ubiqu 98.5 9E-07 2.3E-11 62.9 8.5 137 46-204 26-183 (242)
39 COG2933 Predicted SAM-dependen 98.4 3.6E-07 9.3E-12 65.4 5.4 86 47-145 184-280 (358)
40 PRK11705 cyclopropane fatty ac 98.4 3.7E-06 9.3E-11 59.1 9.3 109 51-184 152-268 (383)
41 PRK05134 3-demethylubiquinone- 98.3 2.9E-06 7.4E-11 59.7 7.7 96 66-184 47-152 (233)
42 TIGR03534 RF_mod_HemK protein- 98.3 1.9E-05 4.9E-10 54.6 11.1 133 67-214 87-248 (251)
43 PRK09328 N5-glutamine S-adenos 98.2 3.8E-05 9.6E-10 52.7 12.0 140 67-225 109-276 (277)
44 pfam03291 Pox_MCEL mRNA cappin 98.2 4E-05 1E-09 52.6 10.6 136 27-199 43-200 (327)
45 KOG1271 consensus 98.2 8.3E-06 2.1E-10 56.8 7.0 129 61-207 61-205 (227)
46 pfam08241 Methyltransf_11 Meth 98.1 3.8E-06 9.6E-11 59.0 4.9 87 72-181 1-95 (95)
47 TIGR03533 L3_gln_methyl protei 98.1 5.5E-05 1.4E-09 51.7 10.8 119 67-204 121-266 (284)
48 pfam01269 Fibrillarin Fibrilla 98.1 3.6E-05 9.1E-10 52.9 9.5 123 64-206 70-211 (229)
49 PRK00377 cbiT cobalt-precorrin 98.1 7.4E-05 1.9E-09 50.9 11.0 126 65-213 38-175 (198)
50 KOG1975 consensus 98.1 1.4E-05 3.5E-10 55.5 6.9 149 34-199 76-250 (389)
51 PRK07580 Mg-protoporphyrin IX 98.1 3.6E-05 9.1E-10 52.9 9.0 107 67-200 63-181 (230)
52 PRK07402 precorrin-6B methylas 98.1 0.00011 2.8E-09 49.8 11.1 127 63-215 37-175 (196)
53 PRK11207 tellurite resistance 98.0 3.6E-05 9.2E-10 52.9 8.5 120 63-206 27-166 (198)
54 COG4106 Tam Trans-aconitate me 98.0 1.3E-05 3.4E-10 55.6 5.9 119 43-188 10-134 (257)
55 pfam01135 PCMT Protein-L-isoas 98.0 2.3E-05 5.8E-10 54.1 7.0 92 65-183 71-173 (205)
56 PRK11805 N5-glutamine S-adenos 98.0 0.00015 3.8E-09 49.0 11.2 134 68-221 134-294 (307)
57 PRK11036 putative metallothion 98.0 4.2E-05 1.1E-09 52.5 8.3 112 68-203 45-168 (256)
58 PTZ00146 fibrillarin; Provisio 98.0 7.6E-05 1.9E-09 50.8 9.3 99 65-183 133-240 (296)
59 PRK04266 fibrillarin; Provisio 98.0 6.3E-05 1.6E-09 51.3 8.9 121 65-206 70-209 (226)
60 pfam10672 Methyltrans_SAM S-ad 98.0 0.00018 4.7E-09 48.4 10.9 125 66-205 122-261 (286)
61 COG4123 Predicted O-methyltran 97.9 4.6E-05 1.2E-09 52.2 7.5 140 65-214 42-203 (248)
62 pfam08704 GCD14 tRNA methyltra 97.9 0.00015 3.8E-09 48.9 9.6 129 47-206 87-232 (309)
63 KOG1596 consensus 97.9 2.5E-05 6.4E-10 53.8 5.3 100 65-184 154-262 (317)
64 COG2519 GCD14 tRNA(1-methylade 97.9 0.0001 2.6E-09 50.0 8.3 138 47-216 79-238 (256)
65 PRK09329 N5-glutamine S-adenos 97.9 0.00054 1.4E-08 45.5 11.8 137 67-223 109-272 (285)
66 PRK09489 rsmC 16S ribosomal RN 97.9 0.0003 7.7E-09 47.1 10.4 117 67-206 196-323 (342)
67 TIGR01983 UbiG ubiquinone bios 97.8 3.1E-05 8E-10 53.2 5.1 113 54-184 68-197 (275)
68 PRK00517 prmA ribosomal protei 97.8 0.00075 1.9E-08 44.6 11.7 114 64-206 159-285 (298)
69 COG2813 RsmC 16S RNA G1207 met 97.8 0.00053 1.3E-08 45.5 10.9 118 68-207 159-287 (300)
70 COG2264 PrmA Ribosomal protein 97.8 0.00016 4E-09 48.8 7.8 125 64-208 159-289 (300)
71 COG1041 Predicted DNA modifica 97.8 0.00049 1.3E-08 45.7 10.2 147 48-222 185-345 (347)
72 COG2227 UbiG 2-polyprenyl-3-me 97.8 0.0001 2.6E-09 50.0 6.7 102 58-184 52-162 (243)
73 pfam02475 Met_10 Met-10+ like- 97.7 0.00015 3.8E-09 49.0 7.3 90 63-179 96-197 (199)
74 pfam08242 Methyltransf_12 Meth 97.7 5.1E-05 1.3E-09 51.9 4.5 87 72-179 1-98 (98)
75 KOG1540 consensus 97.7 0.00057 1.5E-08 45.3 9.7 140 46-203 64-234 (296)
76 TIGR02081 metW methionine bios 97.7 5.8E-05 1.5E-09 51.6 4.3 75 62-141 8-89 (205)
77 COG2890 HemK Methylase of poly 97.7 0.00057 1.5E-08 45.3 9.3 129 70-213 113-269 (280)
78 pfam06325 PrmA Ribosomal prote 97.7 4.8E-05 1.2E-09 52.1 3.8 119 64-205 157-280 (294)
79 PRK04457 spermidine synthase; 97.6 0.0027 6.9E-08 41.1 12.6 130 64-210 62-206 (262)
80 PRK13942 protein-L-isoaspartat 97.6 0.00021 5.3E-09 48.1 6.7 92 65-183 74-176 (214)
81 pfam04989 CmcI Cephalosporin h 97.6 0.00097 2.5E-08 43.9 9.8 104 67-182 32-142 (202)
82 PRK01544 bifunctional N5-gluta 97.6 0.00075 1.9E-08 44.6 9.2 103 67-183 135-266 (503)
83 PRK11088 rrmA 23S rRNA methylt 97.6 0.00043 1.1E-08 46.1 7.8 108 67-204 85-199 (272)
84 PRK08287 cobalt-precorrin-6Y C 97.6 0.0009 2.3E-08 44.1 9.4 122 65-213 28-161 (186)
85 pfam09445 Methyltransf_15 RNA 97.6 0.00044 1.1E-08 46.1 7.7 115 68-198 1-136 (165)
86 pfam05401 NodS Nodulation prot 97.5 0.00019 4.8E-09 48.4 5.6 115 68-205 44-177 (201)
87 TIGR02752 MenG_heptapren 2-hep 97.5 0.00025 6.4E-09 47.5 5.4 118 66-204 44-172 (231)
88 pfam01795 Methyltransf_5 MraW 97.5 0.011 2.8E-07 37.3 13.6 84 55-144 9-102 (310)
89 COG0421 SpeE Spermidine syntha 97.4 0.0039 9.9E-08 40.1 11.3 137 69-223 78-235 (282)
90 pfam01170 UPF0020 Putative RNA 97.4 0.0011 2.8E-08 43.5 8.1 109 48-174 13-133 (171)
91 TIGR02021 BchM-ChlM magnesium 97.3 0.00046 1.2E-08 45.9 5.2 86 39-141 28-126 (224)
92 PRK00312 pcm protein-L-isoaspa 97.3 0.0009 2.3E-08 44.1 6.5 93 65-187 76-179 (213)
93 COG2242 CobL Precorrin-6B meth 97.3 0.012 3E-07 37.1 12.0 108 65-199 32-151 (187)
94 pfam03848 TehB Tellurite resis 97.2 0.0032 8.1E-08 40.6 8.5 120 63-207 27-166 (192)
95 COG2263 Predicted RNA methylas 97.1 0.0084 2.1E-07 38.0 10.2 117 49-196 29-155 (198)
96 pfam06016 Reovirus_L2 Reovirus 97.1 0.0062 1.6E-07 38.9 9.4 142 61-222 501-654 (1289)
97 PRK00050 mraW S-adenosyl-methy 97.1 0.025 6.5E-07 35.0 13.4 82 55-144 12-103 (309)
98 COG0275 Predicted S-adenosylme 97.1 0.026 6.6E-07 34.9 13.1 84 55-144 12-105 (314)
99 PRK06202 hypothetical protein; 97.1 0.0055 1.4E-07 39.2 8.9 67 68-143 62-138 (233)
100 KOG1499 consensus 97.1 0.0016 4E-08 42.6 5.9 105 52-179 47-163 (346)
101 COG1889 NOP1 Fibrillarin-like 97.1 0.0045 1.2E-07 39.7 8.1 120 65-205 74-212 (231)
102 PRK13944 protein-L-isoaspartat 97.0 0.0011 2.8E-08 43.5 4.7 95 65-186 70-176 (205)
103 PRK03522 rumB 23S rRNA methylu 97.0 0.0068 1.7E-07 38.6 8.7 89 49-151 215-314 (375)
104 PRK06922 hypothetical protein; 97.0 0.0069 1.8E-07 38.5 8.7 103 66-182 419-538 (679)
105 pfam02384 N6_Mtase N-6 DNA Met 97.0 0.0035 8.9E-08 40.4 7.1 141 47-201 29-207 (312)
106 pfam00891 Methyltransf_2 O-met 97.0 0.034 8.6E-07 34.2 12.1 126 34-182 68-197 (239)
107 PRK12335 tellurite resistance 97.0 0.0042 1.1E-07 39.9 7.4 105 59-188 115-231 (289)
108 PRK13943 protein-L-isoaspartat 97.0 0.0012 3E-08 43.4 4.5 90 65-181 73-173 (317)
109 KOG1270 consensus 96.9 0.0036 9.2E-08 40.3 6.6 101 61-183 77-195 (282)
110 PRK13168 rumA 23S rRNA 5-methy 96.8 0.0089 2.3E-07 37.8 7.9 75 65-150 292-377 (440)
111 pfam01596 Methyltransf_3 O-met 96.8 0.03 7.6E-07 34.6 10.5 116 49-186 29-159 (204)
112 COG2521 Predicted archaeal met 96.8 0.05 1.3E-06 33.2 12.1 162 28-207 53-277 (287)
113 PRK00811 spermidine synthase; 96.8 0.032 8.1E-07 34.4 10.4 123 67-207 78-221 (283)
114 TIGR02469 CbiT precorrin-6Y C5 96.7 0.013 3.4E-07 36.8 8.2 103 65-183 17-133 (135)
115 TIGR00406 prmA ribosomal prote 96.7 0.0035 8.8E-08 40.4 5.1 130 56-205 185-323 (330)
116 COG4976 Predicted methyltransf 96.6 0.0029 7.4E-08 40.9 4.2 121 44-188 105-230 (287)
117 KOG1500 consensus 96.6 0.0064 1.6E-07 38.8 5.9 120 36-180 144-279 (517)
118 PRK05031 tRNA (uracil-5-)-meth 96.4 0.035 8.8E-07 34.2 8.8 92 52-152 193-304 (363)
119 pfam08123 DOT1 Histone methyla 96.4 0.052 1.3E-06 33.0 9.5 109 55-186 31-162 (205)
120 COG2520 Predicted methyltransf 96.3 0.057 1.4E-06 32.8 9.4 136 64-226 185-338 (341)
121 KOG3420 consensus 96.3 0.01 2.7E-07 37.4 5.6 126 27-170 6-144 (185)
122 TIGR00537 hemK_rel_arch methyl 96.3 0.01 2.5E-07 37.5 5.3 128 63-206 17-167 (183)
123 KOG2899 consensus 96.3 0.016 4E-07 36.3 6.3 45 57-105 44-92 (288)
124 TIGR00080 pimt protein-L-isoas 96.1 0.039 9.9E-07 33.8 7.5 96 63-185 78-189 (228)
125 COG4122 Predicted O-methyltran 96.1 0.085 2.2E-06 31.7 9.2 100 66-186 58-170 (219)
126 COG2265 TrmA SAM-dependent met 96.1 0.022 5.5E-07 35.4 6.1 87 53-151 279-376 (432)
127 COG3963 Phospholipid N-methylt 96.0 0.052 1.3E-06 33.1 8.0 130 66-210 47-185 (194)
128 pfam05958 tRNA_U5-meth_tr tRNA 96.0 0.047 1.2E-06 33.3 7.7 89 53-150 184-292 (353)
129 KOG0820 consensus 96.0 0.01 2.7E-07 37.4 4.4 110 23-149 13-137 (315)
130 TIGR00006 TIGR00006 S-adenosyl 96.0 0.14 3.7E-06 30.3 10.2 84 52-144 16-111 (323)
131 KOG2904 consensus 96.0 0.056 1.4E-06 32.9 7.9 136 68-214 149-321 (328)
132 pfam10294 Methyltransf_16 Puta 95.9 0.1 2.6E-06 31.2 9.0 115 66-199 43-171 (171)
133 COG3510 CmcI Cephalosporin hyd 95.9 0.11 2.8E-06 31.0 9.1 103 67-181 69-178 (237)
134 PRK05785 hypothetical protein; 95.9 0.045 1.2E-06 33.4 7.1 64 66-143 50-116 (225)
135 pfam08003 Methyltransf_9 Prote 95.9 0.062 1.6E-06 32.6 7.8 117 67-207 115-267 (315)
136 COG0030 KsgA Dimethyladenosine 95.9 0.041 1E-06 33.7 6.8 82 55-149 19-109 (259)
137 TIGR03451 mycoS_dep_FDH mycoth 95.8 0.069 1.8E-06 32.3 7.8 97 65-183 174-276 (358)
138 PRK00274 ksgA dimethyladenosin 95.8 0.029 7.4E-07 34.6 5.9 103 65-177 37-149 (267)
139 pfam01564 Spermine_synth Sperm 95.8 0.16 4.1E-06 30.0 9.7 124 67-207 75-217 (240)
140 smart00650 rADc Ribosomal RNA 95.8 0.025 6.5E-07 35.0 5.4 100 66-178 12-125 (169)
141 KOG2915 consensus 95.7 0.023 5.8E-07 35.3 5.2 84 47-143 90-185 (314)
142 PTZ00338 dimethyladenosine tra 95.7 0.035 8.9E-07 34.1 5.9 70 65-149 36-117 (296)
143 PRK00121 trmB tRNA (guanine-N( 95.7 0.069 1.8E-06 32.3 7.4 121 67-203 54-192 (229)
144 COG0357 GidB Predicted S-adeno 95.7 0.15 3.9E-06 30.1 9.2 112 68-206 68-196 (215)
145 KOG2940 consensus 95.6 0.012 3.1E-07 37.0 3.4 136 28-197 44-188 (325)
146 KOG3010 consensus 95.5 0.026 6.6E-07 34.9 4.7 111 69-201 35-157 (261)
147 pfam00398 RrnaAD Ribosomal RNA 95.4 0.045 1.1E-06 33.4 5.8 77 58-148 22-107 (258)
148 pfam02390 Methyltransf_4 Putat 95.4 0.087 2.2E-06 31.7 7.0 117 66-198 19-152 (199)
149 KOG3045 consensus 95.3 0.084 2.1E-06 31.7 6.8 115 55-202 168-286 (325)
150 COG4076 Predicted RNA methylas 95.3 0.028 7.1E-07 34.7 4.3 94 69-186 34-139 (252)
151 TIGR00740 TIGR00740 methyltran 95.2 0.029 7.4E-07 34.6 4.1 128 52-202 44-191 (247)
152 pfam01234 NNMT_PNMT_TEMT NNMT/ 95.1 0.3 7.6E-06 28.3 10.0 48 52-105 40-89 (261)
153 PHA02056 putative methyltransf 95.1 0.018 4.5E-07 36.0 2.9 120 50-182 46-175 (279)
154 KOG1663 consensus 95.0 0.27 7E-06 28.5 8.7 102 66-186 72-188 (237)
155 COG2518 Pcm Protein-L-isoaspar 94.9 0.043 1.1E-06 33.6 4.4 96 54-184 63-170 (209)
156 PRK00536 speE spermidine synth 94.7 0.38 9.7E-06 27.6 10.1 128 57-209 60-201 (262)
157 COG0742 N6-adenine-specific me 94.7 0.23 5.9E-06 29.0 7.7 104 62-186 34-157 (187)
158 KOG2187 consensus 94.6 0.099 2.5E-06 31.3 5.5 92 51-152 367-470 (534)
159 PRK10909 rsmD 16S rRNA m(2)G96 94.6 0.28 7.1E-06 28.5 7.8 99 67-186 52-161 (198)
160 PRK11783 rlmL 23S rRNA m(2)G24 94.5 0.3 7.6E-06 28.3 7.8 103 66-187 551-675 (716)
161 TIGR00477 tehB tellurite resis 94.4 0.045 1.2E-06 33.4 3.5 111 57-188 64-183 (239)
162 KOG4300 consensus 94.4 0.19 4.9E-06 29.5 6.6 120 61-202 68-201 (252)
163 KOG2361 consensus 94.4 0.11 2.8E-06 31.0 5.4 154 34-207 38-207 (264)
164 pfam03686 UPF0146 Uncharacteri 94.4 0.46 1.2E-05 27.1 8.6 97 67-190 13-109 (127)
165 KOG0024 consensus 94.1 0.036 9.2E-07 34.1 2.5 100 65-184 167-274 (354)
166 pfam05148 Methyltransf_8 Hypot 94.1 0.53 1.3E-05 26.8 11.2 164 4-203 4-176 (214)
167 COG1255 Uncharacterized protei 94.0 0.39 9.9E-06 27.6 7.6 96 66-189 13-108 (129)
168 pfam00145 DNA_methylase C-5 cy 94.0 0.46 1.2E-05 27.1 7.9 136 69-222 1-159 (319)
169 KOG2671 consensus 93.8 0.17 4.4E-06 29.8 5.5 114 58-183 199-354 (421)
170 pfam05206 TRM13 Methyltransfer 93.6 0.5 1.3E-05 26.9 7.6 101 55-173 6-117 (256)
171 KOG2360 consensus 93.5 0.049 1.3E-06 33.2 2.2 147 67-224 213-391 (413)
172 cd00315 Cyt_C5_DNA_methylase C 93.0 0.8 2E-05 25.6 8.1 138 69-222 1-161 (275)
173 pfam06962 rRNA_methylase Putat 92.8 0.86 2.2E-05 25.4 7.8 83 98-188 2-97 (140)
174 KOG1661 consensus 92.7 0.04 1E-06 33.8 0.8 140 63-214 78-231 (237)
175 KOG1541 consensus 92.4 0.62 1.6E-05 26.3 6.6 137 68-221 51-200 (270)
176 pfam05185 PRMT5 PRMT5 arginine 92.4 0.39 1E-05 27.5 5.6 99 69-184 188-298 (447)
177 COG4798 Predicted methyltransf 92.3 0.77 2E-05 25.7 7.0 35 65-102 46-80 (238)
178 PRK09422 alcohol dehydrogenase 92.3 1 2.5E-05 25.0 8.0 112 46-182 145-260 (338)
179 PRK10083 putative dehydrogenas 92.1 0.72 1.8E-05 25.9 6.6 99 65-186 158-262 (339)
180 PRK04148 hypothetical protein; 92.1 0.73 1.8E-05 25.9 6.6 104 58-189 8-115 (135)
181 PRK10611 chemotaxis methyltran 91.5 1.2 3.1E-05 24.5 9.0 126 47-183 97-262 (287)
182 COG0220 Predicted S-adenosylme 91.3 0.85 2.2E-05 25.4 6.3 113 63-191 42-172 (227)
183 TIGR00479 rumA 23S rRNA (uraci 91.3 0.35 9E-06 27.8 4.3 85 54-149 281-376 (434)
184 KOG3191 consensus 91.2 1.3 3.3E-05 24.3 12.4 145 68-226 44-208 (209)
185 TIGR00182 plsX fatty acid/phos 91.0 0.45 1.1E-05 27.2 4.6 73 68-150 138-233 (344)
186 TIGR01181 dTDP_gluc_dehyt dTDP 91.0 0.67 1.7E-05 26.1 5.5 59 80-144 14-82 (340)
187 TIGR00417 speE spermidine synt 90.8 0.61 1.6E-05 26.3 5.1 130 61-206 67-224 (284)
188 pfam05724 TPMT Thiopurine S-me 90.7 1.4 3.7E-05 24.0 7.6 116 65-201 20-169 (203)
189 PRK05396 tdh L-threonine 3-deh 90.7 1.4 3.7E-05 24.0 7.9 97 67-186 163-266 (341)
190 COG1063 Tdh Threonine dehydrog 90.2 1.6 4E-05 23.7 10.2 104 63-188 164-274 (350)
191 pfam03602 Cons_hypoth95 Conser 90.2 1.6 4.1E-05 23.7 8.1 99 67-186 43-154 (181)
192 TIGR03366 HpnZ_proposed putati 90.0 0.47 1.2E-05 27.0 4.0 94 65-182 118-217 (280)
193 KOG2730 consensus 89.7 0.4 1E-05 27.5 3.5 74 44-125 70-158 (263)
194 pfam12147 Hydrolase_5 Putative 89.3 1.9 4.8E-05 23.3 8.9 138 26-181 95-247 (311)
195 TIGR03201 dearomat_had 6-hydro 89.0 2 5.1E-05 23.1 7.0 103 65-184 164-273 (349)
196 PRK09880 L-idonate 5-dehydroge 88.6 0.31 7.9E-06 28.2 2.2 97 66-186 168-269 (343)
197 PRK11524 putative methyltransf 88.3 2.2 5.6E-05 22.9 7.7 28 173-200 205-233 (284)
198 TIGR00091 TIGR00091 tRNA (guan 88.2 2.2 5.7E-05 22.8 7.5 122 66-206 18-171 (216)
199 pfam03141 DUF248 Putative meth 87.7 0.66 1.7E-05 26.1 3.5 162 38-223 339-505 (506)
200 pfam06080 DUF938 Protein of un 87.6 2.4 6.2E-05 22.6 6.7 28 155-182 110-137 (201)
201 KOG1331 consensus 87.4 2.2 5.7E-05 22.8 6.1 127 33-185 13-145 (293)
202 TIGR03439 methyl_EasF probable 87.0 2.6 6.6E-05 22.4 10.0 183 29-223 34-262 (319)
203 PRK13771 putative alcohol dehy 86.7 2.2 5.7E-05 22.8 5.7 93 61-182 157-254 (332)
204 TIGR00095 TIGR00095 putative m 86.6 1.9 4.8E-05 23.3 5.3 106 67-184 55-178 (210)
205 pfam01739 CheR CheR methyltran 86.1 2.9 7.5E-05 22.1 9.0 98 68-182 31-172 (194)
206 pfam04672 DUF574 Protein of un 86.0 2.9 7.5E-05 22.1 8.4 135 47-202 56-210 (268)
207 PRK06567 putative bifunctional 85.9 1.1 2.7E-05 24.9 3.7 41 67-111 400-440 (1048)
208 KOG1269 consensus 85.6 0.73 1.9E-05 25.9 2.8 104 64-184 107-216 (364)
209 PRK13845 putative glycerol-3-p 85.4 0.87 2.2E-05 25.4 3.1 92 47-150 207-333 (437)
210 COG1062 AdhC Zn-dependent alco 84.2 2.9 7.5E-05 22.1 5.3 97 66-184 184-286 (366)
211 pfam09243 Rsm22 Mitochondrial 83.6 2.1 5.2E-05 23.0 4.3 46 54-103 22-67 (275)
212 COG1064 AdhP Zn-dependent alco 83.2 3.9 0.0001 21.3 7.8 90 65-182 164-258 (339)
213 PRK06179 short chain dehydroge 82.9 4 0.0001 21.2 9.3 80 67-149 3-87 (270)
214 smart00138 MeTrc Methyltransfe 82.7 4.1 0.0001 21.2 7.2 120 47-183 74-242 (264)
215 PRK12428 3-alpha-hydroxysteroi 82.6 4.2 0.00011 21.1 10.5 72 67-142 4-75 (261)
216 pfam02527 GidB rRNA small subu 81.9 3.1 7.8E-05 21.9 4.7 104 68-200 49-163 (184)
217 KOG1209 consensus 81.9 4.4 0.00011 21.0 5.6 81 68-150 7-96 (289)
218 KOG4169 consensus 81.8 4.4 0.00011 20.9 8.2 152 67-225 4-184 (261)
219 COG0500 SmtA SAM-dependent met 81.0 4.7 0.00012 20.8 9.2 95 71-186 52-158 (257)
220 KOG2651 consensus 80.6 1.5 3.9E-05 23.8 2.8 44 55-103 141-184 (476)
221 KOG2920 consensus 80.3 5 0.00013 20.6 5.4 134 51-193 98-249 (282)
222 PRK05331 putative glycerol-3-p 79.7 2.1 5.3E-05 23.0 3.2 103 36-150 97-233 (317)
223 PRK10846 bifunctional folylpol 79.7 5.2 0.00013 20.5 12.6 66 139-217 299-366 (416)
224 pfam01358 PARP_regulatory Poly 79.4 5.3 0.00014 20.5 7.1 98 46-145 30-138 (295)
225 PRK13846 putative glycerol-3-p 78.7 2.6 6.6E-05 22.4 3.5 92 47-150 110-234 (316)
226 PRK11908 NAD-dependent epimera 78.7 5.6 0.00014 20.3 7.8 47 95-145 26-78 (347)
227 COG3897 Predicted methyltransf 78.5 5.7 0.00014 20.3 5.4 99 58-186 71-180 (218)
228 pfam02504 FA_synthesis Fatty a 78.0 2.7 6.9E-05 22.3 3.4 93 46-150 104-230 (322)
229 KOG3924 consensus 77.5 3.7 9.4E-05 21.5 3.9 92 43-142 161-279 (419)
230 PRK01581 speE spermidine synth 76.6 6.4 0.00016 19.9 9.3 99 68-183 140-257 (363)
231 COG1236 YSH1 Predicted exonucl 76.3 5.1 0.00013 20.6 4.4 99 96-200 141-240 (427)
232 COG5459 Predicted rRNA methyla 76.2 3 7.6E-05 22.0 3.2 34 44-80 92-126 (484)
233 PRK12767 carbamoyl phosphate s 76.1 6.6 0.00017 19.9 9.0 148 69-221 2-166 (325)
234 COG0416 PlsX Fatty acid/phosph 75.5 2.5 6.3E-05 22.6 2.6 162 26-202 83-318 (338)
235 TIGR00452 TIGR00452 methyltran 74.7 3.8 9.7E-05 21.4 3.4 32 67-103 121-152 (316)
236 pfam07757 AdoMet_MTase Predict 73.1 3.9 1E-04 21.3 3.1 51 48-105 40-90 (112)
237 COG0286 HsdM Type I restrictio 72.3 8.2 0.00021 19.3 7.7 156 28-198 151-346 (489)
238 TIGR00755 ksgA dimethyladenosi 72.2 7 0.00018 19.7 4.3 82 58-148 21-115 (277)
239 PRK13255 thiopurine S-methyltr 72.1 8.3 0.00021 19.2 7.1 115 66-201 36-184 (218)
240 TIGR01179 galE UDP-glucose 4-e 72.1 8.3 0.00021 19.2 5.1 58 111-169 50-118 (341)
241 TIGR00513 accA acetyl-CoA carb 71.9 1.4 3.6E-05 24.1 0.6 59 39-109 137-196 (329)
242 TIGR03675 arCOG00543 arCOG0178 71.8 8.4 0.00021 19.2 4.7 86 113-202 341-428 (630)
243 PRK03612 spermidine synthase; 71.5 8.5 0.00022 19.2 8.9 124 67-206 293-438 (516)
244 PRK06398 aldose dehydrogenase; 71.5 8.6 0.00022 19.2 8.6 78 67-147 5-85 (256)
245 TIGR01444 fkbM_fam methyltrans 70.8 4.7 0.00012 20.8 3.1 34 70-105 1-34 (142)
246 smart00829 PKS_ER Enoylreducta 69.9 9.3 0.00024 18.9 7.3 94 65-180 102-202 (288)
247 PRK10693 response regulator of 68.3 9 0.00023 19.0 4.1 20 66-85 51-70 (337)
248 pfam07942 N2227 N2227-like pro 68.0 8.9 0.00023 19.1 4.0 78 110-205 145-237 (268)
249 PRK07806 short chain dehydroge 67.4 10 0.00027 18.6 9.9 112 67-181 5-132 (248)
250 PRK00107 gidB glucose-inhibite 67.3 11 0.00027 18.6 9.9 102 67-197 69-181 (216)
251 COG0623 FabI Enoyl-[acyl-carri 66.7 11 0.00027 18.5 6.7 78 109-188 55-149 (259)
252 PRK13699 putative methylase; P 65.9 11 0.00028 18.4 5.3 41 157-201 148-189 (227)
253 pfam05219 DREV DREV methyltran 65.6 11 0.00029 18.4 8.7 29 69-103 96-124 (265)
254 COG0270 Dcm Site-specific DNA 65.4 5.9 0.00015 20.2 2.7 117 68-199 3-138 (328)
255 TIGR01230 agmatinase agmatinas 65.4 6 0.00015 20.1 2.8 56 72-131 229-293 (296)
256 KOG0022 consensus 64.9 12 0.0003 18.3 4.9 77 66-152 191-274 (375)
257 PRK10046 dpiA two-component re 64.1 6.8 0.00017 19.8 2.8 65 134-198 49-123 (225)
258 PRK10610 chemotaxis regulatory 62.9 5.8 0.00015 20.2 2.3 27 132-158 47-74 (129)
259 PRK07578 short chain dehydroge 60.4 14 0.00036 17.8 8.6 101 69-181 1-109 (199)
260 TIGR00959 ffh signal recogniti 60.2 14 0.00036 17.8 4.6 117 70-195 104-242 (439)
261 PRK05872 short chain dehydroge 59.8 14 0.00037 17.7 9.5 112 67-181 8-138 (296)
262 PRK10955 DNA-binding transcrip 59.6 15 0.00037 17.7 3.9 43 159-201 155-209 (232)
263 PRK06603 enoyl-(acyl carrier p 59.1 15 0.00038 17.7 8.4 113 67-181 7-144 (260)
264 pfam05891 Hydroxy-O-Methy Puta 58.2 15 0.00039 17.6 7.3 93 69-183 57-161 (217)
265 pfam01555 N6_N4_Mtase DNA meth 57.8 16 0.0004 17.5 4.8 41 157-201 166-207 (221)
266 PRK08220 2,3-dihydroxybenzoate 56.9 16 0.00041 17.4 8.5 112 67-181 7-133 (253)
267 pfam10356 DUF2034 Protein of u 56.6 16 0.00042 17.4 5.8 90 113-204 2-114 (185)
268 TIGR03587 Pse_Me-ase pseudamin 56.3 17 0.00042 17.4 7.0 98 29-143 9-113 (204)
269 pfam10237 N6-adenineMlase Prob 56.2 17 0.00042 17.4 9.8 133 67-222 25-157 (161)
270 TIGR00138 gidB methyltransfera 56.1 7.1 0.00018 19.7 1.8 108 56-189 35-157 (197)
271 KOG1197 consensus 55.7 17 0.00043 17.3 7.2 79 58-141 138-221 (336)
272 pfam10354 DUF2431 Domain of un 55.4 17 0.00043 17.3 4.7 75 111-190 53-132 (166)
273 TIGR03315 Se_ygfK putative sel 54.7 17 0.00045 17.2 4.7 16 67-82 536-551 (1012)
274 PRK09853 putative selenate red 54.5 18 0.00045 17.2 5.0 31 66-98 548-578 (1032)
275 KOG2078 consensus 54.4 5 0.00013 20.6 0.8 49 47-105 232-281 (495)
276 PRK11361 acetoacetate metaboli 54.3 8.9 0.00023 19.1 2.0 28 48-77 148-175 (457)
277 PRK08213 gluconate 5-dehydroge 54.3 18 0.00045 17.2 9.2 86 56-146 2-100 (259)
278 PRK09242 tropinone reductase; 53.7 18 0.00046 17.1 8.5 117 60-181 4-145 (258)
279 TIGR02418 acolac_catab acetola 52.9 17 0.00044 17.3 3.3 136 63-206 265-469 (553)
280 pfam11324 DUF3126 Protein of u 52.5 19 0.00048 17.0 3.9 32 189-220 2-34 (63)
281 PRK06550 fabG 3-ketoacyl-(acyl 52.5 19 0.00048 17.0 9.2 73 67-144 4-77 (237)
282 PRK08324 short chain dehydroge 51.9 19 0.0005 16.9 9.9 111 67-181 420-554 (676)
283 COG1748 LYS9 Saccharopine dehy 51.6 20 0.0005 16.9 8.7 126 69-204 2-146 (389)
284 PRK10365 transcriptional regul 51.6 6.8 0.00017 19.8 1.1 22 67-89 161-182 (441)
285 KOG3178 consensus 51.3 20 0.00051 16.9 7.8 53 65-121 175-232 (342)
286 TIGR01096 3A0103s03R lysine-ar 51.1 20 0.00051 16.8 3.4 51 94-144 45-103 (333)
287 pfam11312 DUF3115 Protein of u 50.9 20 0.00051 16.8 4.0 73 67-140 79-179 (288)
288 PRK12825 fabG 3-ketoacyl-(acyl 48.9 22 0.00055 16.6 7.7 79 67-148 6-98 (250)
289 COG0825 AccA Acetyl-CoA carbox 48.8 14 0.00036 17.8 2.3 37 39-79 128-165 (317)
290 COG1088 RfbB dTDP-D-glucose 4, 48.5 22 0.00056 16.6 5.9 50 94-145 25-84 (340)
291 TIGR00437 feoB ferrous iron tr 48.1 17 0.00042 17.4 2.6 78 108-198 47-153 (733)
292 PRK11127 autonomous glycyl rad 47.7 18 0.00047 17.1 2.8 67 73-141 30-99 (127)
293 PRK06124 gluconate 5-dehydroge 47.6 23 0.00058 16.5 7.8 83 58-145 6-101 (259)
294 PRK10309 galactitol-1-phosphat 47.2 23 0.00059 16.5 7.8 95 66-182 159-259 (347)
295 PRK06171 sorbitol-6-phosphate 47.0 23 0.00059 16.4 9.0 75 67-145 8-87 (266)
296 PRK11430 hypothetical protein; 45.3 25 0.00063 16.3 4.2 21 112-132 71-91 (381)
297 PRK08125 bifunctional UDP-gluc 45.0 25 0.00063 16.3 5.7 74 65-144 312-391 (660)
298 PRK07533 enoyl-(acyl carrier p 44.3 25 0.00065 16.2 10.0 116 67-184 5-145 (254)
299 pfam03492 Methyltransf_7 SAM d 44.2 26 0.00065 16.2 3.6 29 58-86 5-35 (331)
300 PRK08277 D-mannonate oxidoredu 43.9 26 0.00066 16.1 10.3 81 59-144 3-96 (278)
301 PRK07825 short chain dehydroge 43.5 26 0.00067 16.1 7.7 80 67-149 4-92 (273)
302 PRK08671 methionine aminopepti 42.9 27 0.00068 16.1 4.3 30 41-75 4-33 (293)
303 cd01088 MetAP2 Methionine Amin 42.8 27 0.00068 16.0 4.2 113 44-178 6-125 (291)
304 CHL00198 accA acetyl-CoA carbo 42.8 12 0.00031 18.2 1.2 38 38-79 131-169 (322)
305 PRK06128 oxidoreductase; Provi 42.4 27 0.00069 16.0 5.4 111 67-181 54-189 (300)
306 PRK06914 short chain dehydroge 42.4 27 0.00069 16.0 8.6 110 68-180 3-136 (280)
307 COG0300 DltE Short-chain dehyd 42.1 28 0.0007 16.0 6.6 148 66-214 4-192 (265)
308 TIGR03438 probable methyltrans 41.6 28 0.00072 15.9 13.3 179 29-224 21-242 (301)
309 pfam00107 ADH_zinc_N Zinc-bind 41.5 28 0.00072 15.9 3.4 72 96-185 16-92 (131)
310 COG2910 Putative NADH-flavin r 41.1 29 0.00073 15.9 7.3 86 85-177 16-105 (211)
311 COG4022 Uncharacterized protei 40.9 29 0.00073 15.9 4.5 59 114-174 170-228 (286)
312 COG1352 CheR Methylase of chem 40.8 29 0.00074 15.8 3.9 128 47-183 72-241 (268)
313 pfam06859 Bin3 Bicoid-interact 40.6 29 0.00074 15.8 3.3 19 165-183 26-44 (110)
314 TIGR03466 HpnA hopanoid-associ 40.3 29 0.00075 15.8 8.7 29 111-143 44-72 (328)
315 TIGR02154 PhoB phosphate regul 39.8 17 0.00045 17.2 1.7 73 123-201 37-121 (226)
316 PRK06182 short chain dehydroge 39.8 30 0.00076 15.8 7.9 145 67-214 2-182 (273)
317 PRK12481 2-deoxy-D-gluconate 3 39.4 30 0.00077 15.7 7.7 111 67-180 7-139 (251)
318 PRK05786 fabG 3-ketoacyl-(acyl 39.0 31 0.00078 15.7 10.6 112 67-181 4-133 (238)
319 pfam05404 TRAP-delta Transloco 38.5 26 0.00066 16.2 2.4 38 173-211 90-127 (167)
320 PRK09072 short chain dehydroge 38.4 31 0.0008 15.6 8.5 145 67-214 4-187 (262)
321 PRK05724 acetyl-CoA carboxylas 38.3 16 0.0004 17.5 1.3 38 38-79 127-165 (318)
322 PRK04143 hypothetical protein; 38.2 5.6 0.00014 20.3 -1.1 60 58-123 32-97 (267)
323 KOG0822 consensus 38.0 32 0.00081 15.6 5.0 26 159-184 454-479 (649)
324 pfam03435 Saccharop_dh Sacchar 37.7 32 0.00082 15.5 8.7 10 70-79 118-127 (384)
325 PRK10430 DNA-binding transcrip 36.6 31 0.00079 15.7 2.5 58 134-191 48-115 (239)
326 cd00156 REC Signal receiver do 36.5 29 0.00074 15.8 2.4 26 133-158 39-65 (113)
327 pfam00072 Response_reg Respons 36.4 34 0.00086 15.4 5.7 23 133-155 40-63 (111)
328 PRK06523 short chain dehydroge 36.2 34 0.00087 15.4 9.5 110 67-180 8-134 (260)
329 PRK06057 short chain dehydroge 35.9 34 0.00088 15.4 9.0 110 67-180 6-136 (255)
330 TIGR03206 benzo_BadH 2-hydroxy 35.7 35 0.00088 15.4 7.0 111 67-181 2-136 (250)
331 PRK11173 two-component respons 35.6 35 0.00089 15.3 4.6 50 39-88 20-69 (237)
332 KOG1198 consensus 35.3 35 0.0009 15.3 5.9 79 59-141 150-231 (347)
333 PRK11917 bifunctional adhesin/ 34.9 11 0.00028 18.5 0.0 20 127-146 93-112 (259)
334 PRK09186 flagellin modificatio 34.8 36 0.00091 15.3 9.3 78 67-147 3-94 (255)
335 PRK10675 UDP-galactose-4-epime 34.8 36 0.00091 15.3 8.7 11 69-79 75-85 (338)
336 PRK13656 trans-2-enoyl-CoA red 34.8 36 0.00091 15.3 4.7 79 64-145 36-142 (400)
337 KOG4022 consensus 34.4 36 0.00093 15.2 7.7 88 94-181 26-127 (236)
338 CHL00194 ycf39 Ycf39; Provisio 34.3 37 0.00093 15.2 6.5 67 69-141 1-70 (319)
339 pfam12241 Enoyl_reductase Tran 34.3 37 0.00093 15.2 2.8 21 28-51 7-27 (237)
340 PRK12746 short chain dehydroge 34.2 37 0.00094 15.2 7.4 114 67-181 5-144 (254)
341 KOG2232 consensus 33.5 11 0.00027 18.5 -0.2 37 55-91 101-141 (734)
342 pfam01073 3Beta_HSD 3-beta hyd 32.9 38 0.00098 15.1 8.2 30 110-143 45-74 (280)
343 pfam05575 V_cholerae_RfbT Vibr 32.8 39 0.00098 15.1 2.9 141 65-212 77-264 (286)
344 pfam03341 Pox_mRNA-cap Poxviru 32.8 30 0.00077 15.7 2.0 89 134-224 94-200 (287)
345 PRK10161 transcriptional regul 32.7 39 0.00099 15.0 3.7 158 42-201 22-207 (229)
346 PRK05866 short chain dehydroge 32.5 39 0.00099 15.0 9.7 111 67-180 39-174 (290)
347 PRK09468 ompR osmolarity respo 32.3 39 0.001 15.0 5.2 35 42-76 25-59 (239)
348 pfam08471 Ribonuc_red_2_N Clas 32.0 23 0.00058 16.5 1.2 16 76-91 12-27 (86)
349 PRK10217 dTDP-glucose 4,6-dehy 31.7 40 0.001 14.9 7.5 48 149-197 220-267 (355)
350 PRK12826 3-ketoacyl-(acyl-carr 31.7 40 0.001 14.9 7.7 76 67-145 5-93 (253)
351 PRK12744 short chain dehydroge 31.6 40 0.001 14.9 9.8 112 67-181 7-143 (257)
352 COG5136 U1 snRNP-specific prot 31.0 35 0.0009 15.3 2.1 44 34-79 34-93 (188)
353 PRK08993 2-deoxy-D-gluconate 3 30.8 42 0.0011 14.9 8.7 80 61-145 5-95 (253)
354 PRK10508 hypothetical protein; 30.7 40 0.001 15.0 2.3 33 50-82 86-118 (333)
355 KOG2775 consensus 30.4 18 0.00045 17.2 0.4 47 22-76 69-117 (397)
356 COG1214 Inactive homolog of me 30.3 35 0.00089 15.3 1.9 35 50-84 40-74 (220)
357 PRK10201 G/U mismatch-specific 30.1 39 0.00099 15.0 2.2 23 63-85 4-26 (168)
358 PRK12319 acetyl-CoA carboxylas 30.1 40 0.001 15.0 2.2 38 38-79 75-113 (256)
359 COG0068 HypF Hydrogenase matur 30.0 43 0.0011 14.8 5.6 35 114-148 422-463 (750)
360 cd01269 PLX Pollux (PLX) Phosp 29.8 35 0.00089 15.3 1.9 53 141-202 71-127 (129)
361 PRK06346 consensus 29.6 44 0.0011 14.7 8.8 112 67-181 4-139 (251)
362 KOG1371 consensus 29.5 44 0.0011 14.7 6.0 71 69-145 3-87 (343)
363 PRK06500 short chain dehydroge 29.4 44 0.0011 14.7 10.1 112 67-181 5-134 (249)
364 PRK07984 enoyl-(acyl carrier p 29.4 44 0.0011 14.7 10.3 115 67-183 5-145 (262)
365 PRK06139 short chain dehydroge 29.1 45 0.0011 14.7 9.0 144 67-213 5-191 (324)
366 PRK06101 short chain dehydroge 28.9 45 0.0011 14.6 9.7 109 70-181 3-125 (241)
367 PRK05717 oxidoreductase; Valid 28.7 45 0.0012 14.6 7.9 111 67-181 9-141 (255)
368 PRK08589 short chain dehydroge 28.2 46 0.0012 14.6 9.9 112 67-181 5-138 (272)
369 TIGR03120 one_C_mch methenylte 27.9 47 0.0012 14.5 2.9 35 55-89 13-54 (312)
370 PRK13774 formimidoylglutamase; 27.5 47 0.0012 14.5 2.7 10 67-76 85-94 (311)
371 pfam02254 TrkA_N TrkA-N domain 27.4 48 0.0012 14.5 7.2 88 78-185 6-97 (115)
372 PRK07479 consensus 27.2 48 0.0012 14.5 10.4 112 67-181 4-139 (252)
373 PRK07326 short chain dehydroge 27.1 48 0.0012 14.4 8.6 111 67-181 4-136 (235)
374 KOG1201 consensus 26.9 49 0.0012 14.4 9.4 113 67-182 37-171 (300)
375 PRK11517 transcriptional regul 26.5 49 0.0012 14.4 2.1 158 42-201 20-200 (223)
376 TIGR02658 TTQ_MADH_Hv methylam 26.5 12 0.00031 18.2 -0.9 11 77-87 254-264 (360)
377 COG3288 PntA NAD/NADP transhyd 26.2 22 0.00057 16.5 0.4 18 66-83 272-289 (356)
378 PRK10336 DNA-binding transcrip 26.0 50 0.0013 14.3 2.6 33 44-76 22-54 (219)
379 pfam11775 CobT_C Cobalamin bio 25.8 38 0.00097 15.1 1.5 11 135-145 137-147 (220)
380 PRK10923 glnG nitrogen regulat 25.6 48 0.0012 14.4 2.0 14 120-133 244-257 (469)
381 TIGR00841 bass bile acid trans 25.6 21 0.00052 16.8 0.1 16 71-86 114-129 (374)
382 TIGR03589 PseB UDP-N-acetylglu 25.6 51 0.0013 14.3 7.1 33 108-144 51-83 (324)
383 PRK05557 fabG 3-ketoacyl-(acyl 25.1 53 0.0013 14.2 9.2 79 67-148 4-96 (248)
384 PRK09836 DNA-binding transcrip 24.8 53 0.0014 14.2 2.7 158 43-201 21-203 (226)
385 COG1069 AraB Ribulose kinase [ 24.4 49 0.0013 14.4 1.9 52 40-91 191-243 (544)
386 KOG2352 consensus 24.4 54 0.0014 14.1 5.1 131 68-207 298-442 (482)
387 KOG2811 consensus 24.3 54 0.0014 14.1 5.1 38 55-92 169-207 (420)
388 PRK09390 fixJ response regulat 24.2 54 0.0014 14.1 2.4 68 133-203 45-122 (202)
389 COG3252 Methenyltetrahydrometh 24.2 45 0.0011 14.7 1.6 26 64-89 27-55 (314)
390 PRK10754 quinone oxidoreductas 24.2 55 0.0014 14.1 9.2 115 42-181 118-237 (327)
391 TIGR02091 glgC glucose-1-phosp 24.2 55 0.0014 14.1 2.1 42 102-143 111-154 (421)
392 PRK10529 DNA-binding transcrip 23.9 50 0.0013 14.4 1.8 158 43-201 22-204 (225)
393 PRK10710 DNA-binding transcrip 23.8 55 0.0014 14.1 2.1 47 41-87 29-75 (240)
394 KOG0023 consensus 23.8 56 0.0014 14.1 7.1 94 61-181 176-277 (360)
395 PRK05650 short chain dehydroge 23.8 56 0.0014 14.1 8.6 140 70-212 2-183 (270)
396 CHL00148 orf27 Ycf27; Reviewed 23.7 56 0.0014 14.1 3.8 36 43-79 27-62 (240)
397 PRK07060 short chain dehydroge 23.2 57 0.0015 14.0 9.0 111 67-181 8-134 (245)
398 PRK12939 short chain dehydroge 23.0 58 0.0015 14.0 7.4 111 67-180 6-139 (250)
399 cd01454 vWA_norD_type norD typ 22.9 58 0.0015 14.0 6.6 65 134-203 104-169 (174)
400 PRK06841 short chain dehydroge 22.9 58 0.0015 14.0 8.1 82 59-145 8-99 (255)
401 TIGR00308 TRM1 N2,N2-dimethylg 22.7 58 0.0015 13.9 3.6 145 70-220 97-269 (462)
402 pfam00106 adh_short short chai 22.6 59 0.0015 13.9 6.5 70 111-180 53-131 (167)
403 TIGR00078 nadC nicotinate-nucl 22.3 44 0.0011 14.7 1.3 25 123-147 194-219 (276)
404 TIGR00675 dcm DNA-cytosine met 22.2 58 0.0015 14.0 1.9 130 71-205 1-161 (425)
405 pfam04734 Ceramidase_alk Neutr 22.1 60 0.0015 13.8 3.0 34 58-91 75-112 (671)
406 pfam11968 DUF3321 Protein of u 21.8 61 0.0015 13.8 2.8 114 69-205 54-180 (220)
407 PRK08628 short chain dehydroge 21.7 61 0.0016 13.8 10.5 111 67-181 6-137 (258)
408 PRK07576 short chain dehydroge 21.7 61 0.0016 13.8 8.9 76 67-146 7-96 (260)
409 TIGR02622 CDP_4_6_dhtase CDP-g 21.6 62 0.0016 13.8 4.6 60 78-144 16-90 (361)
410 PRK07024 short chain dehydroge 21.4 62 0.0016 13.8 9.0 74 69-145 3-87 (256)
411 PRK11519 tyrosine kinase; Prov 21.3 62 0.0016 13.8 7.0 82 66-147 524-647 (720)
412 PRK07097 gluconate 5-dehydroge 21.3 62 0.0016 13.8 7.9 82 59-145 3-97 (265)
413 PRK10701 DNA-binding transcrip 21.1 62 0.0016 13.8 1.8 38 43-80 22-59 (240)
414 KOG0229 consensus 21.0 61 0.0016 13.8 1.8 43 178-224 152-209 (420)
415 PRK11083 DNA-binding response 21.0 63 0.0016 13.7 2.2 40 39-79 20-59 (229)
416 PRK07890 short chain dehydroge 20.9 64 0.0016 13.7 7.4 110 67-180 4-137 (258)
417 PRK07370 enoyl-(acyl carrier p 20.8 64 0.0016 13.7 10.4 114 67-182 6-147 (259)
418 COG1089 Gmd GDP-D-mannose dehy 20.5 44 0.0011 14.7 1.0 115 84-210 17-153 (345)
419 PRK12937 short chain dehydroge 20.5 65 0.0017 13.6 8.9 112 67-181 4-137 (245)
420 pfam03269 DUF268 Caenorhabditi 20.4 65 0.0017 13.6 8.2 126 68-207 2-145 (177)
421 TIGR02823 oxido_YhdH putative 20.4 34 0.00087 15.4 0.4 22 64-85 77-103 (330)
422 KOG3201 consensus 20.3 65 0.0017 13.6 5.9 119 67-200 29-158 (201)
423 PRK12429 3-hydroxybutyrate deh 20.3 65 0.0017 13.6 7.8 112 67-181 3-137 (258)
424 PRK07035 short chain dehydroge 20.3 65 0.0017 13.6 7.2 77 67-146 7-96 (252)
425 KOG3115 consensus 20.1 52 0.0013 14.2 1.3 32 69-104 62-93 (249)
426 KOG3206 consensus 20.0 66 0.0017 13.6 3.1 99 21-122 107-227 (234)
No 1
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=100.00 E-value=0 Score=547.94 Aligned_cols=207 Identities=38% Similarity=0.620 Sum_probs=199.7
Q ss_pred ECCCCCCCCHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCE
Q ss_conf 00014640079999964089999999881844799999999986458313796788850455306899999706878832
Q gi|254780313|r 17 VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNT 96 (227)
Q Consensus 17 ~~~k~~~~ss~~W~~r~~~D~y~~~Ak~~gyrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~ 96 (227)
|..|++++||++|++||.+|+||++||++||||||||||+|||+||+||+||++|||||||||||+|||++++++ .|
T Consensus 1 ~~~~~r~~sS~~W~~rq~~D~y~k~Ak~~gyRsRaafKL~EId~K~~l~~~~~~VlDLGaAPG~WsQva~~~~~~---~g 77 (209)
T PRK11188 1 MSGKKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGD---KG 77 (209)
T ss_pred CCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCC---CC
T ss_conf 997668803599999871799999999868278999979999988564578998998068997578999997399---97
Q ss_pred EEEEECCCCCCCCCCCEEEECCCCHHHHHHHHHHHCC-CCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 7864112133346981783011220799999997313-887489753202110222101578898999889876411487
Q gi|254780313|r 97 RVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNI 175 (227)
Q Consensus 97 ~VigVDl~~~~~i~gv~~~~gDi~~~~~~~~i~~~l~-~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~ 175 (227)
+|+||||+||+|++||+|++|||+++++++.+.+.++ .++|+||||||||+||++++||+++++||+.+|++|..+|++
T Consensus 78 ~VigVDl~~~~pi~gv~~i~gDi~~~~~~~~i~~~~~~~~~DvVlSDmAPn~tG~~~~D~~~s~~L~~~al~~a~~~Lk~ 157 (209)
T PRK11188 78 RVIACDILPMDPIVGVDFLQGDFRDELVLKALLERVGDSKVDVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRQVLAP 157 (209)
T ss_pred EEEEEECCCCCCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 39998653045378967640344588999999998589873089666665667870335999999999999999986267
Q ss_pred CCEEEEEEECCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEECCCC
Q ss_conf 746999930599989999999862584699768665755824989830755
Q gi|254780313|r 176 GGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226 (227)
Q Consensus 176 gG~fV~K~F~G~~~~~l~~~l~~~F~~V~~~KP~aSR~~S~E~Ylv~~gfK 226 (227)
||+||+|+|+|.++++++..++.+|++|+++||+|||++|+|+|+||+|||
T Consensus 158 gG~fv~K~F~G~~~~~~~~~~k~~F~~V~~~KP~ASR~~S~E~Ylv~~gfK 208 (209)
T PRK11188 158 GGSFVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIVATGYK 208 (209)
T ss_pred CCEEEEEEECCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEEECCC
T ss_conf 988999996487999999999702597889998674667854677870564
No 2
>TIGR00438 rrmJ ribosomal RNA large subunit methyltransferase J; InterPro: IPR004512 The ribosomal RNA large subunit methyltransferase J 2.1.1 from EC methylates the 23S rRNA. It specifically methylates the uridine in position 2552 of 23s rRNA in the 50S particle using S-adenosyl-L-methionine as a substrate. It was previously known as cell division protein ftsJ.; GO: 0016436 rRNA (uridine) methyltransferase activity, 0006364 rRNA processing.
Probab=100.00 E-value=0 Score=520.03 Aligned_cols=187 Identities=42% Similarity=0.670 Sum_probs=183.6
Q ss_pred CHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCC--CCCCCE
Q ss_conf 999999988184479999999998645831379678885045530689999970687883278641121333--469817
Q gi|254780313|r 36 DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME--PILGVK 113 (227)
Q Consensus 36 D~y~~~Ak~~gyrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~--~i~gv~ 113 (227)
|+||++|||++|||||+|||+|||++|+|||+|++|||||||||||||||.+.+|. .|.||||||+||+ |+.||.
T Consensus 1 D~Yy~~AkK~~yRSRA~fKL~qln~~~kLik~G~~VlDLGAAPGGWsQva~~~~G~---kG~ViA~Dl~~~k~FP~~nv~ 77 (192)
T TIGR00438 1 DYYYQKAKKEKYRSRASFKLLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGG---KGRVIAVDLQPMKGFPIENVD 77 (192)
T ss_pred CCCHHHHHHCCCCHHHHHHHHHHCCCCCCEECCCEEEECCCCCCCHHHHHHHHHCC---CCEEEEEECCCCCCCCCCCEE
T ss_conf 94124243248801667899985021561107886786578987387788776068---533899854557885646614
Q ss_pred EEECCCCHHHHHHHHHHHCCC---CCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHH
Q ss_conf 830112207999999973138---87489753202110222101578898999889876411487746999930599989
Q gi|254780313|r 114 FFKFDFLDLDSWEFIRQAIGG---NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTN 190 (227)
Q Consensus 114 ~~~gDi~~~~~~~~i~~~l~~---~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~ 190 (227)
||+||||++++.+.|++.+++ ++||||||||||+||.|++||.|+++|++.||++|..+|+++||||+|+|||+++.
T Consensus 78 fi~GDftdee~l~ki~~~~g~dekk~DVV~SDaaP~~SG~~~iDh~Rs~dLv~~aL~ia~~vL~~~GnfvvKvFqGe~~d 157 (192)
T TIGR00438 78 FIRGDFTDEEVLNKILERVGDDEKKVDVVMSDAAPNISGIWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEID 157 (192)
T ss_pred EEECCCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHH
T ss_conf 75447678789999998578987437789852688878987543443799999999999998615898999985374288
Q ss_pred HHHHHHHHHCCEEEEECCCCCCCCCCEEEEEECCC
Q ss_conf 99999986258469976866575582498983075
Q gi|254780313|r 191 DILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225 (227)
Q Consensus 191 ~l~~~l~~~F~~V~~~KP~aSR~~S~E~Ylv~~gf 225 (227)
++++.++++|.+|++.||.|||++|+|+|+||++|
T Consensus 158 ~y~~e~r~~F~~~k~~kP~aSRk~SaEvYiva~~~ 192 (192)
T TIGR00438 158 EYLNELRKLFEKVKVTKPQASRKRSAEVYIVAKRF 192 (192)
T ss_pred HHHHHHHHCCCEEEEECCHHHHHCCCEEEEEEECC
T ss_conf 99997652054767447831320574689975069
No 3
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=0 Score=474.67 Aligned_cols=202 Identities=50% Similarity=0.837 Sum_probs=195.6
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEEC
Q ss_conf 40079999964089999999881844799999999986458313796788850455306899999706878832786411
Q gi|254780313|r 23 QGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID 102 (227)
Q Consensus 23 ~~ss~~W~~r~~~D~y~~~Ak~~gyrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVD 102 (227)
+.+|++|+.+|.+|+||++||++||||||||||+|||+||+||++|+.|+|||||||||||||+++++.++ +|+|||
T Consensus 1 ~~~s~~wl~~~~~D~Y~~~Ak~~gyRSRAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~---~vvavD 77 (205)
T COG0293 1 SGSSQRWLAEHLRDPYYKKAKKEGYRSRAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGG---KIVAVD 77 (205)
T ss_pred CCCHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCC---CEEEEE
T ss_conf 96417789876026899987650621058889999987437305898799838799849999999738888---489997
Q ss_pred CCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCC-CCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 213334698178301122079999999731388-7489753202110222101578898999889876411487746999
Q gi|254780313|r 103 ILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV 181 (227)
Q Consensus 103 l~~~~~i~gv~~~~gDi~~~~~~~~i~~~l~~~-~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~ 181 (227)
++||+|++||.+++|||+++++.+.|.+.+++. +|+|+||||||+||++++||+++++||+.|+++|..+|++||+||+
T Consensus 78 i~p~~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~ 157 (205)
T COG0293 78 ILPMKPIPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVA 157 (205)
T ss_pred CCCCCCCCCCEEEEEECCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEECCCCEEEE
T ss_conf 75455678946884132484379999987077876668725887767872200889999999999999872578983999
Q ss_pred EEECCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEECCCCC
Q ss_conf 9305999899999998625846997686657558249898307559
Q gi|254780313|r 182 KTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227 (227)
Q Consensus 182 K~F~G~~~~~l~~~l~~~F~~V~~~KP~aSR~~S~E~Ylv~~gfKk 227 (227)
|+|||.+++++++.++++|++|+.+||+|||++|+|+|+||++|+.
T Consensus 158 K~fqg~~~~~~l~~~~~~F~~v~~~KP~aSR~~S~E~y~v~~~~~~ 203 (205)
T COG0293 158 KVFQGEDFEDLLKALRRLFRKVKIFKPKASRKRSREIYLVAKGFKG 203 (205)
T ss_pred EEEECCCHHHHHHHHHHHHCEEEEECCCCCCCCCCEEEEEEECCCC
T ss_conf 9975798799999999863206773585546777148999971435
No 4
>KOG4589 consensus
Probab=100.00 E-value=0 Score=472.42 Aligned_cols=215 Identities=37% Similarity=0.625 Sum_probs=206.7
Q ss_pred CCCCEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHH
Q ss_conf 56541100001464007999996408999999988184479999999998645831379678885045530689999970
Q gi|254780313|r 10 RRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89 (227)
Q Consensus 10 ~~~~~~~~~~k~~~~ss~~W~~r~~~D~y~~~Ak~~gyrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~ 89 (227)
.+.+...++.|.+++|+.+|+.||.+|||+++||.++|||||||||+|||+||++|+|+++|||+|||||+|||||.+++
T Consensus 12 ~r~~f~~i~sr~rs~s~~~wl~Rql~Dpy~kkAkv~NyR~RsAFKLiEindKy~~l~p~~~VlD~G~APGsWsQVavqr~ 91 (232)
T KOG4589 12 IRSMFGTIGSRYRSKSLHRWLTRQLKDPYVKKAKVQNYRSRSAFKLIEINDKYRFLRPEDTVLDCGAAPGSWSQVAVQRV 91 (232)
T ss_pred EHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEEEHHHCCCCCCCCEEEECCCCCCHHHHHHHHHH
T ss_conf 01210334444566408899988613788888877515666543421541011436888779981678871899998862
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCEEEEC-CCCHHHHHHHHHHHCCC-CCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 6878832786411213334698178301-12207999999973138-874897532021102221015788989998898
Q gi|254780313|r 90 GSNANNTRVVAIDILDMEPILGVKFFKF-DFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATF 167 (227)
Q Consensus 90 ~~~~~~~~VigVDl~~~~~i~gv~~~~g-Di~~~~~~~~i~~~l~~-~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~ 167 (227)
+++| .|+||||+++.|++|+.+++| ||+++.+..+|.+.+.+ ++|+||||||||.||.+..||+++++||.++|.
T Consensus 92 ~p~g---~v~gVDllh~~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~ 168 (232)
T KOG4589 92 NPNG---MVLGVDLLHIEPPEGATIIQGNDVTDPETYRKIFEALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALL 168 (232)
T ss_pred CCCC---EEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 8874---2888743311488876401432468888999999867998321887135778767512437899999999998
Q ss_pred HHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEECCCCC
Q ss_conf 764114877469999305999899999998625846997686657558249898307559
Q gi|254780313|r 168 FALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227 (227)
Q Consensus 168 ~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~~~F~~V~~~KP~aSR~~S~E~Ylv~~gfKk 227 (227)
+|+..+.|+|+||||+|+|++..+|.+.|...|+.|+.+||.|||++|+|.|+||++||.
T Consensus 169 ~al~~~~p~g~fvcK~w~g~e~~~l~r~l~~~f~~Vk~vKP~Asr~eS~E~y~v~~~~k~ 228 (232)
T KOG4589 169 FALTLLIPNGSFVCKLWDGSEEALLQRRLQAVFTNVKKVKPDASRDESAETYLVCLNFKG 228 (232)
T ss_pred HHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCEEECCCCCCCCCCCEEEEEEECCC
T ss_conf 863214778579999704973289999999986321762775455545011653221257
No 5
>KOG1099 consensus
Probab=100.00 E-value=0 Score=403.33 Aligned_cols=193 Identities=39% Similarity=0.582 Sum_probs=184.0
Q ss_pred CCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCC-----CCCEEEEEECCCCCCC
Q ss_conf 08999999988184479999999998645831379678885045530689999970687-----8832786411213334
Q gi|254780313|r 34 INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSN-----ANNTRVVAIDILDMEP 108 (227)
Q Consensus 34 ~~D~y~~~Ak~~gyrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~-----~~~~~VigVDl~~~~~ 108 (227)
.+|-|||+||++|||+||||||++||+.|+||+-..+|||||||||+||||+++++... ..+-+||+||||+|.|
T Consensus 8 KRDiYYRlAKe~gwRARSAFKLlqideef~i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaP 87 (294)
T KOG1099 8 KRDIYYRLAKENGWRARSAFKLLQIDEEFQIFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAP 87 (294)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHCCEEEEECCCCCC
T ss_conf 46799998876061577677775013666277603677435308983999999997324887420116279985565776
Q ss_pred CCCCEEEECCCCHHHHHHHHHHHCCC-CCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCC
Q ss_conf 69817830112207999999973138-87489753202110222101578898999889876411487746999930599
Q gi|254780313|r 109 ILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGG 187 (227)
Q Consensus 109 i~gv~~~~gDi~~~~~~~~i~~~l~~-~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~ 187 (227)
|+||..+||||++.+|.+.|.+++++ ++|+|+||+||++||.++.|++.+.+|..+||.++..+|++||+||.|+|+|.
T Consensus 88 I~GV~qlq~DIT~~stae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~ 167 (294)
T KOG1099 88 IEGVIQLQGDITSASTAEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGR 167 (294)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEECCCCEEEHHHHCCC
T ss_conf 67627850455777689999998579976678847998744532088999999999998777420147875255464267
Q ss_pred CHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEECCCC
Q ss_conf 989999999862584699768665755824989830755
Q gi|254780313|r 188 TTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226 (227)
Q Consensus 188 ~~~~l~~~l~~~F~~V~~~KP~aSR~~S~E~Ylv~~gfK 226 (227)
++..|...|+.+|++|...||.|||..|-|.|+||.||-
T Consensus 168 ~tslLysql~~ff~kv~~~KPrsSR~sSiEaFvvC~~~~ 206 (294)
T KOG1099 168 DTSLLYSQLRKFFKKVTCAKPRSSRNSSIEAFVVCLGYC 206 (294)
T ss_pred CHHHHHHHHHHHHHCEEEECCCCCCCCCCEEEEEECCCC
T ss_conf 507899999998506156047766666301466641568
No 6
>pfam01728 FtsJ FtsJ-like methyltransferase. This family consists of FtsJ from various bacterial and archaeal sources FtsJ is a methyltransferase, but actually has no effect on cell division. FtsJ's substrate is the 23S rRNA. The 1.5 A crystal structure of FtsJ in complex with its cofactor S-adenosylmethionine revealed that FtsJ has a methyltransferase fold. This family also includes the N terminus of flaviviral NS5 protein. It has been hypothesized that the N-terminal domain of NS5 is a methyltransferase involved in viral RNA capping.
Probab=100.00 E-value=0 Score=383.66 Aligned_cols=175 Identities=39% Similarity=0.600 Sum_probs=168.6
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEECCCCHHHHHH
Q ss_conf 44799999999986458313796788850455306899999706878832786411213334698178301122079999
Q gi|254780313|r 47 WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWE 126 (227)
Q Consensus 47 yrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~i~gv~~~~gDi~~~~~~~ 126 (227)
|||||||||+|||++|+|++++.+||||||||||||||+.++.. .++|+|||+++|+|++++.+++|||++.++++
T Consensus 1 y~sRa~~KL~ei~~~~~l~~~~~~vlDLg~aPGgwsq~~~~~~~----~~~v~~vDl~~~~~~~~~~~i~gDi~~~~~~~ 76 (176)
T pfam01728 1 YVSRAAFKLLEIDERFGLKPGGKTVLDLGAAPGGFSQVLLERGA----KGRVVAVDLGPMKPIQGVTFLRGDITDPETLE 76 (176)
T ss_pred CCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHCC----CCEEEEEECCCCCCCCCCEEECCCCCCHHHHH
T ss_conf 96749999999999769887999999968999769999998566----87399997344656778456516766878999
Q ss_pred HHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHH-HHHHHHHHHCCEEEE
Q ss_conf 9997313887489753202110222101578898999889876411487746999930599989-999999862584699
Q gi|254780313|r 127 FIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTN-DILCLLKKHFQKVIH 205 (227)
Q Consensus 127 ~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~-~l~~~l~~~F~~V~~ 205 (227)
.+.+.+.+++|+|+||||||+||++..||.++++|++.++.+|..+|++||+||+|+|+|.+.. ++++.++.+|++|++
T Consensus 77 ~i~~~~~~~~DlV~sD~a~~~~g~~~~d~~~s~~L~~~~l~~a~~~L~~gG~fv~K~f~~~~~~~~l~~~l~~~F~~v~~ 156 (176)
T pfam01728 77 KLLELLPGKVDLVLCDGAPNVSGLENTDSFISLRLVLAALLLALEVLRPGGNFVVKLFKGFEFSVELLYKLKKGFEKVGI 156 (176)
T ss_pred HHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHCCCEEEE
T ss_conf 99997399846897336656567733478999999999999999982437639999982787649999999831788999
Q ss_pred ECCCCCCCCCCEEEEEECCC
Q ss_conf 76866575582498983075
Q gi|254780313|r 206 VKPVASRAESVEMFLLAKGF 225 (227)
Q Consensus 206 ~KP~aSR~~S~E~Ylv~~gf 225 (227)
+||.|||++|+|+|+||+||
T Consensus 157 ~KP~aSR~~s~E~Yiv~~~f 176 (176)
T pfam01728 157 FKPPASRPSSSEEYLVCLGF 176 (176)
T ss_pred ECCCCCCCCCCEEEEEECCC
T ss_conf 86899799886699996289
No 7
>KOG1098 consensus
Probab=100.00 E-value=0 Score=386.62 Aligned_cols=191 Identities=32% Similarity=0.476 Sum_probs=184.9
Q ss_pred HCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCC
Q ss_conf 40899999998818447999999999864583137967888504553068999997068788327864112133346981
Q gi|254780313|r 33 HINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGV 112 (227)
Q Consensus 33 ~~~D~y~~~Ak~~gyrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~i~gv 112 (227)
++.|.||++||+.||||||||||+|||++|.+|.++..|||||||||||+|||++.++. ++.||||||.||.|++||
T Consensus 10 ~r~Dk~Y~lAke~GyrsRsaFKLlQln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~pv---~slivGvDl~pikp~~~c 86 (780)
T KOG1098 10 GRLDKYYRLAKELGYRSRSAFKLLQLNKKYKFLEKAHVVLDLCAAPGGWLQVASQSMPV---GSLIVGVDLVPIKPIPNC 86 (780)
T ss_pred CCCHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCHHEECCCCCCHHHHHHHHHCCC---CCEEEEEEEEECCCCCCC
T ss_conf 76339999999843267877899988877510034411100025874799999976788---734887520112468763
Q ss_pred EEEECCCCHHHHHHHHHHHCC-CCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHH
Q ss_conf 783011220799999997313-8874897532021102221015788989998898764114877469999305999899
Q gi|254780313|r 113 KFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191 (227)
Q Consensus 113 ~~~~gDi~~~~~~~~i~~~l~-~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~ 191 (227)
..++.||+...+...++..+. .++|+||+|||||++|+|..|.+.+..|.+.+|.+|+.+|+.||+||.|+|...++..
T Consensus 87 ~t~v~dIttd~cr~~l~k~l~t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtkvfrs~dy~~ 166 (780)
T KOG1098 87 DTLVEDITTDECRSKLRKILKTWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTKVFRSEDYNG 166 (780)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH
T ss_conf 21454642888888999998727776784058886431678999986788999999999999746843044556776118
Q ss_pred HHHHHHHHCCEEEEECCCCCCCCCCEEEEEECCCC
Q ss_conf 99999862584699768665755824989830755
Q gi|254780313|r 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226 (227)
Q Consensus 192 l~~~l~~~F~~V~~~KP~aSR~~S~E~Ylv~~gfK 226 (227)
|++.+...|.+|..+||.|||.+|.|+|+||.||.
T Consensus 167 ll~v~~qLf~kv~~tkp~asr~~saeif~vc~~~l 201 (780)
T KOG1098 167 LLRVFGQLFKKVEATKPAASRSESAEIFVVCLGYL 201 (780)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHCCCEEEEEECCC
T ss_conf 99999999999970488143320012355320014
No 8
>KOG3673 consensus
Probab=99.92 E-value=5.8e-25 Score=176.88 Aligned_cols=193 Identities=21% Similarity=0.321 Sum_probs=148.6
Q ss_pred CCCHHHHHHHHH----------CCHHHHHHHHHHHHHHCCCCC--CC----C-----E------EEEEECCCCHHHHHHH
Q ss_conf 089999999881----------844799999999986458313--79----6-----7------8885045530689999
Q gi|254780313|r 34 INDPYVQRAQLE----------GWRARSAYKLLQINEKHQILQ--SN----R-----R------IVDLGSSPGSWSQVAA 86 (227)
Q Consensus 34 ~~D~y~~~Ak~~----------gyrsRaafKL~eId~kf~l~k--~g----~-----~------VlDLGaaPGgWsQva~ 86 (227)
.+|.=-++|+.. =+-.|||.|+..||.-|+.+= |- . + .-|.||+|||||+|+.
T Consensus 207 l~d~e~RrARtRaNPyEtIrs~fFlNRAAmKmANmD~i~d~mftNpRdp~g~~lva~~~~eLlYFaDvCAGPGGFSEYvL 286 (845)
T KOG3673 207 LSDKELRRARTRANPYETIRSAFFLNRAAMKMANMDKIYDWMFTNPRDPLGESLVAENVEELLYFADVCAGPGGFSEYVL 286 (845)
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHH
T ss_conf 27388887762178488888898763888875037888888747988734574346547777777866058886313000
Q ss_pred --HHHCCCCCCEEEEEEC-CC----------CCCCCCCCEEEECCCCHHHHHHHHHHHCC-----CCCCEEEECCCHHHC
Q ss_conf --9706878832786411-21----------33346981783011220799999997313-----887489753202110
Q gi|254780313|r 87 --RITGSNANNTRVVAID-IL----------DMEPILGVKFFKFDFLDLDSWEFIRQAIG-----GNPDLVLSDMAYPTI 148 (227)
Q Consensus 87 --~~~~~~~~~~~VigVD-l~----------~~~~i~gv~~~~gDi~~~~~~~~i~~~l~-----~~~DlVlSDmapn~S 148 (227)
+.....|.+-+.-|-+ .. -.++..|+.- .|||+++.+++.+..++. ..+++.|+|++..+-
T Consensus 287 wRK~w~AKGFGfTL~G~nDFKLekF~aaS~e~FetfYG~k~-dGdi~dp~Nidsl~~~i~~~T~~~GVHf~MADGGFSVE 365 (845)
T KOG3673 287 WRKFWNAKGFGFTLAGKNDFKLEKFTAASQEFFETFYGTKD-DGDIMDPVNIDSLEAHISRGTSGLGVHFMMADGGFSVE 365 (845)
T ss_pred HHHHHCCCCCEEEECCCCCCCHHHHHHCCHHHHHCCCCCCC-CCCCCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCC
T ss_conf 03342246641573068742024333038776430036368-87727821168999998628987543899706872301
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECC--CCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEECCCC
Q ss_conf 22210157889899988987641148774699993059--9989999999862584699768665755824989830755
Q gi|254780313|r 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG--GTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226 (227)
Q Consensus 149 G~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G--~~~~~l~~~l~~~F~~V~~~KP~aSR~~S~E~Ylv~~gfK 226 (227)
|...++++.|-+|.++++-.|+.++++||+|+||+|+= +-..-|+.+|..+|+.|..+||.+||+.++|.|+||+|.|
T Consensus 366 GQeNiQEILSKqLyLCQfL~aL~IvR~gG~F~CK~FDlFTPFSVGLvYLmy~Cfq~v~l~KP~tSRPANSERYivCKglr 445 (845)
T KOG3673 366 GQENIQEILSKQLYLCQFLVALCIVREGGNFFCKLFDLFTPFSVGLVYLMYVCFQSVSLHKPHTSRPANSERYIVCKGLR 445 (845)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHEEEECCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCHH
T ss_conf 16669999998899999988860561498578864101675146699999999888631267788988774169861113
Q ss_pred C
Q ss_conf 9
Q gi|254780313|r 227 K 227 (227)
Q Consensus 227 k 227 (227)
+
T Consensus 446 ~ 446 (845)
T KOG3673 446 K 446 (845)
T ss_pred H
T ss_conf 4
No 9
>KOG3674 consensus
Probab=99.89 E-value=4.8e-23 Score=164.90 Aligned_cols=184 Identities=22% Similarity=0.251 Sum_probs=143.4
Q ss_pred HHHCCHHHHHHHHHHHHHHCCCC-CCCC--EEEEEECCCCHHHHHHH----HHHCCCCCCEEEEEECCCCCCC-------
Q ss_conf 88184479999999998645831-3796--78885045530689999----9706878832786411213334-------
Q gi|254780313|r 43 QLEGWRARSAYKLLQINEKHQIL-QSNR--RIVDLGSSPGSWSQVAA----RITGSNANNTRVVAIDILDMEP------- 108 (227)
Q Consensus 43 k~~gyrsRaafKL~eId~kf~l~-k~g~--~VlDLGaaPGgWsQva~----~~~~~~~~~~~VigVDl~~~~~------- 108 (227)
-..-...-|..||-||-+.|.++ +++. +-+.||.|||.|..-.. ..-+++--.++-.+-.|.|--+
T Consensus 105 ~~ae~~T~AwcKl~Eil~~fpl~~~ea~~inS~HLCEaPGaFIaslnhyL~s~r~k~~~~W~W~anTLNPY~E~n~~~~m 184 (696)
T KOG3674 105 FIAENVTKAWCKLCEILEVFPLDIFEASSINSFHLCEAPGAFIASLNHYLMSSRGKNMSYWKWGANTLNPYFENNSCFDM 184 (696)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCHHHHH
T ss_conf 77777799999999998855766533334453233058607999999999860377653455134766710036458887
Q ss_pred ----------CCCCEEE---ECCCCHHHHHHHHHH--HCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf ----------6981783---011220799999997--3138874897532021102221015788989998898764114
Q gi|254780313|r 109 ----------ILGVKFF---KFDFLDLDSWEFIRQ--AIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173 (227)
Q Consensus 109 ----------i~gv~~~---~gDi~~~~~~~~i~~--~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~L 173 (227)
+..=.|- .|||.+......+.+ .+.|.+|+|++|++.|+.|+..-.++.-..|..+....|+.+|
T Consensus 185 i~DDr~I~~Tld~WyFgpd~tGdi~~~~~~~~l~~~v~~~gtvdLVTADGS~dcqg~pgeqE~iVssL~~aEV~~AL~~L 264 (696)
T KOG3674 185 IIDDRHIRPTLDQWYFGPDDTGDIEKFTEEYLLKQEVKLAGTVDLVTADGSTDCQGKPGEQESIVSSLISAEVEVALKLL 264 (696)
T ss_pred HCCCHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 60203310330002217887751888788999999987602378994378644579985389999999999999999998
Q ss_pred CCCCEEEEEEECC--CCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEECCCC
Q ss_conf 8774699993059--9989999999862584699768665755824989830755
Q gi|254780313|r 174 NIGGDFLVKTFQG--GTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226 (227)
Q Consensus 174 k~gG~fV~K~F~G--~~~~~l~~~l~~~F~~V~~~KP~aSR~~S~E~Ylv~~gfK 226 (227)
+.||+||+|+|.- .-...++..+.-.|++|++|||.+||+.|+|+|+||.|||
T Consensus 265 ~~gG~filKmft~fe~cS~~lmylLnc~F~~Vh~fKPatSk~GnSEvYVvCl~yK 319 (696)
T KOG3674 265 RRGGRFILKMFTFFEKCSRDLMYLLNCNFSSVHAFKPATSKPGNSEVYVVCLGYK 319 (696)
T ss_pred HCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCC
T ss_conf 5488551999999998659999998723766311353357999861799952567
No 10
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.33 E-value=5e-12 Score=95.83 Aligned_cols=129 Identities=24% Similarity=0.338 Sum_probs=95.5
Q ss_pred CCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC-C----------CCCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf 8313796788850455306899999706878832786411213-3----------3469817830112207999999973
Q gi|254780313|r 63 QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-M----------EPILGVKFFKFDFLDLDSWEFIRQA 131 (227)
Q Consensus 63 ~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~-~----------~~i~gv~~~~gDi~~~~~~~~i~~~ 131 (227)
--++||++||||||++|--+-.+++++|+.| +|+|||+.+ | ..+.||.|.+||+.+.. +
T Consensus 69 a~l~pGe~VLDLGcG~G~d~~~aA~~VG~~G---~ViGVD~s~~ML~~Ar~~a~~~G~~NVeF~~Gdae~LP-------l 138 (258)
T PRK11873 69 AELKPGETVLDLGSGAGFDCFLAARRVGPTG---KVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALP-------V 138 (258)
T ss_pred CCCCCCCEEEEECCCCCHHHHHHHHHHCCCC---EEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCC-------C
T ss_conf 6579999899947887775999999869997---79998599999999999999759975599995553136-------8
Q ss_pred CCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE-E--------------------ECCC-CH
Q ss_conf 138874897532021102221015788989998898764114877469999-3--------------------0599-98
Q gi|254780313|r 132 IGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK-T--------------------FQGG-TT 189 (227)
Q Consensus 132 l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K-~--------------------F~G~-~~ 189 (227)
.++.||+|+|....|.+- |-. .++.-+.++|||||.|++- + ..|. ..
T Consensus 139 ~D~SfDvViSncVlnl~p----Dk~-------~vl~E~~RVLKPGGRl~ISDiv~~~~lP~~~r~d~~l~~~CiaGA~~~ 207 (258)
T PRK11873 139 ADGSVDVIISNCVINLSP----DKE-------RVFREAFRVLKPGGRFAISDVVLTGELPEELRNDAALYAGCVAGALSV 207 (258)
T ss_pred CCCCEEEEEECCEEECCC----CHH-------HHHHHHHHHCCCCCEEEEEEEECCCCCCHHHHHCHHHHHCCCCCCCCH
T ss_conf 988351998824676079----879-------999999996288978999974127779999985989873120366859
Q ss_pred HHHHHHHH-HHCCEEEEECCCCCC
Q ss_conf 99999998-625846997686657
Q gi|254780313|r 190 NDILCLLK-KHFQKVIHVKPVASR 212 (227)
Q Consensus 190 ~~l~~~l~-~~F~~V~~~KP~aSR 212 (227)
.+++..++ .-|..|.+.+-..||
T Consensus 208 ~~~~~~l~~aGF~~i~i~~~~~~~ 231 (258)
T PRK11873 208 EEYLAMLAEAGFVDITIEPKRDSR 231 (258)
T ss_pred HHHHHHHHHCCCCCEEEEECHHHH
T ss_conf 999999997699832998553279
No 11
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=99.33 E-value=3.9e-11 Score=90.24 Aligned_cols=130 Identities=20% Similarity=0.249 Sum_probs=83.9
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CCC--CCCCEEEECCCCHHHHHHHHHHHCC
Q ss_conf 13796788850455306899999706878832786411213---------334--6981783011220799999997313
Q gi|254780313|r 65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------MEP--ILGVKFFKFDFLDLDSWEFIRQAIG 133 (227)
Q Consensus 65 ~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~~--i~gv~~~~gDi~~~~~~~~i~~~l~ 133 (227)
.+||++|||+||||||-|-.++..++. .|.|+|+|+.+ ++. +.++.....|- . .+...+.
T Consensus 111 p~pge~VLDlCAAPGGKtt~la~~m~~---~G~lvAnd~~~~R~~~L~~n~~r~G~~n~~vt~~d~-----~-~~~~~~~ 181 (471)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNN---QGALVANEYSASRVKVLHANISRCGVSNVALTHFDG-----R-VFGAALP 181 (471)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCC---CCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCH-----H-HHHHHCC
T ss_conf 899998999577854899999997589---966999838899999999999971998479993586-----6-7403230
Q ss_pred CCCCEEEECCCHHHCCCCCC----H---------HHHHHHHHHHHHHHHHHCCCCCCEEEEEE--ECCCCHHHHH-HHHH
Q ss_conf 88748975320211022210----1---------57889899988987641148774699993--0599989999-9998
Q gi|254780313|r 134 GNPDLVLSDMAYPTIGHRKI----D---------HLRTMSLCEAATFFALEMLNIGGDFLVKT--FQGGTTNDIL-CLLK 197 (227)
Q Consensus 134 ~~~DlVlSDmapn~SG~~~~----D---------~~~~~~L~~~al~~A~~~Lk~gG~fV~K~--F~G~~~~~l~-~~l~ 197 (227)
+.||.||.|. .|||.... | ......+....|.-|..+|+|||.+|--+ |.-++-++.+ +.+.
T Consensus 182 ~~FD~ILvDa--PCSG~G~~rk~p~~~~~w~~~~~~~~~~~Q~~iL~~A~~~LkpGG~LVYSTCT~~peENE~vv~~~l~ 259 (471)
T PRK11933 182 EMFDAILLDA--PCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKE 259 (471)
T ss_pred CCCCEEEECC--CCCCCEEECCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 1066799878--88887335559757641898799999999999999999873889689998179995667999999998
Q ss_pred HHCCEEEE
Q ss_conf 62584699
Q gi|254780313|r 198 KHFQKVIH 205 (227)
Q Consensus 198 ~~F~~V~~ 205 (227)
.+=+.|..
T Consensus 260 ~~p~~v~~ 267 (471)
T PRK11933 260 TYGDAVEF 267 (471)
T ss_pred HCCCCEEC
T ss_conf 68863310
No 12
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=5.5e-12 Score=95.56 Aligned_cols=157 Identities=23% Similarity=0.337 Sum_probs=106.6
Q ss_pred HHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC------CCCCCCCEEEE
Q ss_conf 881844799999999986458313796788850455306899999706878832786411213------33469817830
Q gi|254780313|r 43 QLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD------MEPILGVKFFK 116 (227)
Q Consensus 43 k~~gyrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~------~~~i~gv~~~~ 116 (227)
..+.|.||++|||+++.+.|+|.-++..+||+|++.|||||++.++- .-.|+|||.-. ...-++|..+.
T Consensus 55 ~~~~yVSRG~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~g-----Ak~VyavDVG~~Ql~~kLR~d~rV~~~E 129 (245)
T COG1189 55 EEQPYVSRGGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRG-----AKHVYAVDVGYGQLHWKLRNDPRVIVLE 129 (245)
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHCC-----CCEEEEEECCCCCCCHHHHCCCCEEEEE
T ss_conf 66676261899999999964868899789982678762999998758-----7479999703774378673598479985
Q ss_pred C-CCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE---EC-------
Q ss_conf 1-122079999999731388748975320211022210157889899988987641148774699993---05-------
Q gi|254780313|r 117 F-DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT---FQ------- 185 (227)
Q Consensus 117 g-Di~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~---F~------- 185 (227)
. |+...+ .+.+.+.+|+++||.++ .|..+ +|-.+..+|+++|-++.=+ |+
T Consensus 130 ~tN~r~l~-----~~~~~~~~d~~v~DvSF-----------ISL~~---iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~ 190 (245)
T COG1189 130 RTNVRYLT-----PEDFTEKPDLIVIDVSF-----------ISLKL---ILPALLLLLKDGGDLVLLVKPQFEAGREQVG 190 (245)
T ss_pred CCCHHHCC-----HHHCCCCCCEEEEEEEH-----------HHHHH---HHHHHHHHCCCCCEEEEEECCHHHHHHHHCC
T ss_conf 27831189-----87817677847996423-----------31998---8899997427886389973655554043227
Q ss_pred ------CCC-----HHHHHHHHHHH-CCEEEEEC-CCCCCCCCCEEEEEEC
Q ss_conf ------999-----89999999862-58469976-8665755824989830
Q gi|254780313|r 186 ------GGT-----TNDILCLLKKH-FQKVIHVK-PVASRAESVEMFLLAK 223 (227)
Q Consensus 186 ------G~~-----~~~l~~~l~~~-F~~V~~~K-P~aSR~~S~E~Ylv~~ 223 (227)
... ...+.+.+... |....+.+ |...-..+.|.++..+
T Consensus 191 kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl~~Spi~G~~GNiE~l~~~~ 241 (245)
T COG1189 191 KKGVVRDPKLHAEVLSKIENFAKELGFQVKGLIKSPIKGGKGNIEFLLLLK 241 (245)
T ss_pred CCCEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEEEEE
T ss_conf 686344801589999999988864595786557267767878675624110
No 13
>PRK11760 putative RNA 2'-O-ribose methyltransferase; Provisional
Probab=99.26 E-value=1.2e-11 Score=93.40 Aligned_cols=131 Identities=24% Similarity=0.248 Sum_probs=86.6
Q ss_pred HHHCCHHHHHHHHHHHHHHC-------CCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCC----CCC
Q ss_conf 88184479999999998645-------8313796788850455306899999706878832786411213334----698
Q gi|254780313|r 43 QLEGWRARSAYKLLQINEKH-------QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP----ILG 111 (227)
Q Consensus 43 k~~gyrsRaafKL~eId~kf-------~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~----i~g 111 (227)
--..-+|||+.||.|--..| ..+++|++.|||||||||||...+++ +..|.|||--+|.| -+.
T Consensus 179 ~P~~APSRStLKLEEA~~~Fip~~e~~~rl~~Gm~aVDLGAaPGGWT~qLv~r------g~~V~AVDnG~m~~~L~~~~~ 252 (356)
T PRK11760 179 FPADAPSRSTLKLEEAFHVFIPREEWDERLASGMRAVDLGACPGGWTYQLVRR------GMFVTAVDNGPMAESLMDTGQ 252 (356)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCHHHHHHHCCCCCEEEECCCCCCHHHHHHHHC------CCEEEEECCCCCCHHHHCCCC
T ss_conf 89889846888799999986798676532169975875586997058999977------988998658767875752887
Q ss_pred CEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCC----CEEEEEEECCC
Q ss_conf 17830112207999999973138874897532021102221015788989998898764114877----46999930599
Q gi|254780313|r 112 VKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIG----GDFLVKTFQGG 187 (227)
Q Consensus 112 v~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~g----G~fV~K~F~G~ 187 (227)
|+.++.|-+.-.- -..++|.++|||.- +..+..+| ...+|..| -.|-.|+=.-.
T Consensus 253 V~H~~~dgf~f~P-------~~~~vdwlVCDmve--------kP~rva~l-------m~~Wl~~gw~~~aifnLKLPMKk 310 (356)
T PRK11760 253 VEHLRADGFKFRP-------TRKNVDWLVCDMVE--------KPARVAEL-------MAQWLVNGWCREAIFNLKLPMKK 310 (356)
T ss_pred EEEEECCCEEECC-------CCCCEEEEEEECCC--------CHHHHHHH-------HHHHHHCCCCHHEEEEECCCCCC
T ss_conf 5788146705636-------99852089970536--------88999999-------99987556002057885167766
Q ss_pred C---HHHHHHHHHHHCC
Q ss_conf 9---8999999986258
Q gi|254780313|r 188 T---TNDILCLLKKHFQ 201 (227)
Q Consensus 188 ~---~~~l~~~l~~~F~ 201 (227)
. ..+.+..+...|.
T Consensus 311 R~~eV~~~l~~i~~~l~ 327 (356)
T PRK11760 311 RYEEVRQCLERIEEQLD 327 (356)
T ss_pred CHHHHHHHHHHHHHHHH
T ss_conf 39999999999999998
No 14
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.19 E-value=1.7e-10 Score=86.28 Aligned_cols=116 Identities=22% Similarity=0.280 Sum_probs=87.5
Q ss_pred HHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC-C-----CCCCCCEEE
Q ss_conf 9881844799999999986458313796788850455306899999706878832786411213-3-----346981783
Q gi|254780313|r 42 AQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-M-----EPILGVKFF 115 (227)
Q Consensus 42 Ak~~gyrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~-~-----~~i~gv~~~ 115 (227)
.+-.+.|+|-++.|++-- . ..++.+||||||+||--|+.++++.+ ++.|+|||..+ | +..+++.|.
T Consensus 10 ~rf~~~r~rp~~DLl~~l---~-~~~~~~vlDlGCG~G~~t~~l~~r~p----~a~v~GiD~S~~Ml~~Ar~~~~~~~f~ 81 (252)
T PRK01683 10 LQFEAERTRPAVELLARV---P-LENVEYVADLGCGPGNSTALLHQRWP----AARITGIDSSPAMLAEARQALPDCQFV 81 (252)
T ss_pred HHHHHHHHCHHHHHHHCC---C-CCCCCEEEEECCCCCHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHCCCCEEE
T ss_conf 988877646399998418---8-88999899937749899999999779----987999989899999999758998387
Q ss_pred ECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf 011220799999997313887489753202110222101578898999889876411487746999930
Q gi|254780313|r 116 KFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF 184 (227)
Q Consensus 116 ~gDi~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F 184 (227)
++|+.+.. ....+|+|.|-++- +|--||... +.-....|+|||.|++-+=
T Consensus 82 ~~D~~~~~--------~~~~~D~ifSNaal----hW~~d~~~~-------~~~~~~~L~PGG~la~Q~p 131 (252)
T PRK01683 82 EADIRNWQ--------PEQALDLIYANASL----QWLPDHYEL-------FPHLVSLLAPQGVLAVQMP 131 (252)
T ss_pred ECCHHCCC--------CCCCCCEEEEEEEH----HHCCCHHHH-------HHHHHHHCCCCCEEEEECC
T ss_conf 25042078--------76787889561004----507877999-------9999982487879999889
No 15
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.19 E-value=1.9e-10 Score=85.91 Aligned_cols=123 Identities=20% Similarity=0.208 Sum_probs=82.8
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CCCCC-CCEEEECCCCHHHHHHHHHHHCCCC
Q ss_conf 3796788850455306899999706878832786411213---------33469-8178301122079999999731388
Q gi|254780313|r 66 QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------MEPIL-GVKFFKFDFLDLDSWEFIRQAIGGN 135 (227)
Q Consensus 66 k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~~i~-gv~~~~gDi~~~~~~~~i~~~l~~~ 135 (227)
++|.+|||+||||||-|-.+++. ++ .+.|+|+|+.+ ++.+. ++....+|...+.. .....+
T Consensus 244 ~~g~~VLD~CAaPGGKt~~la~~-~~---~~~v~A~D~~~~Rl~~l~~n~~Rlg~~~~v~~~d~~~~~~-----~~~~~~ 314 (428)
T PRK10901 244 QNGEHILDLCAAPGGKTTHILEV-AP---EAQVLAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQ-----WCGEQQ 314 (428)
T ss_pred CCCCEEEEECCCCCHHHHHHHHH-CC---CCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHH-----HCCCCC
T ss_conf 88987987168876689999996-45---8928999698889999999999759973999776557233-----134456
Q ss_pred CCEEEECCCHHHCCCCCC-------------HHHHHHHHHHHHHHHHHHCCCCCCEEE---EEEECCCCHHHHHHHHHHH
Q ss_conf 748975320211022210-------------157889899988987641148774699---9930599989999999862
Q gi|254780313|r 136 PDLVLSDMAYPTIGHRKI-------------DHLRTMSLCEAATFFALEMLNIGGDFL---VKTFQGGTTNDILCLLKKH 199 (227)
Q Consensus 136 ~DlVlSDmapn~SG~~~~-------------D~~~~~~L~~~al~~A~~~Lk~gG~fV---~K~F~G~~~~~l~~~l~~~ 199 (227)
||.||.| | .|||...+ |-.....|....|+-|..+|+|||.+| |-++.-++...+.+.|+++
T Consensus 315 fD~ILlD-a-PCSg~G~lrR~Pdikw~~~~~di~~l~~lQ~~iL~~a~~~lk~gG~LvYsTCSi~~eENe~~I~~FL~~~ 392 (428)
T PRK10901 315 FDRILLD-A-PCSATGVIRRHPDIKWLRRDRDIAELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSQQIKAFLQRT 392 (428)
T ss_pred CCEEEEC-C-CCCCCEEECCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHC
T ss_conf 7879975-8-9888724446854211289999999999999999999986688988999989999577899999999859
No 16
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=9.8e-10 Score=81.46 Aligned_cols=127 Identities=23% Similarity=0.273 Sum_probs=85.5
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CC--CCCCCEEEECCCCHHHHHHHHHHHC-
Q ss_conf 13796788850455306899999706878832786411213---------33--4698178301122079999999731-
Q gi|254780313|r 65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------ME--PILGVKFFKFDFLDLDSWEFIRQAI- 132 (227)
Q Consensus 65 ~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~--~i~gv~~~~gDi~~~~~~~~i~~~l- 132 (227)
.+||..|||+||||||-|-.+++.+.+.+ +.|+|+|..+ ++ .+.++..+..|-.... ....
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~--~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~-----~~~~~ 226 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEG--AIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLA-----ELLPG 226 (355)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHCCCCC--CEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCC-----CCCCC
T ss_conf 99979688807999769999999668998--769974498789999999999719983489951330143-----11345
Q ss_pred CCCCCEEEECCCHHHCCCCCC-------------HHHHHHHHHHHHHHHHHHCCCCCCEEE---EEEECCCCHHHHHHHH
Q ss_conf 388748975320211022210-------------157889899988987641148774699---9930599989999999
Q gi|254780313|r 133 GGNPDLVLSDMAYPTIGHRKI-------------DHLRTMSLCEAATFFALEMLNIGGDFL---VKTFQGGTTNDILCLL 196 (227)
Q Consensus 133 ~~~~DlVlSDmapn~SG~~~~-------------D~~~~~~L~~~al~~A~~~Lk~gG~fV---~K~F~G~~~~~l~~~l 196 (227)
.++||.||.| +.|||...+ |......|....|.-|..+|++||.+| |-++.-+++..+...+
T Consensus 227 ~~~fD~iLlD--aPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV~~~L 304 (355)
T COG0144 227 GEKFDRILLD--APCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVVERFL 304 (355)
T ss_pred CCCCCEEEEC--CCCCCCEEECCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHCCHHHHHHHH
T ss_conf 5777859987--99987711335812320389999999999999999999984487988999902375002889999999
Q ss_pred HHHC
Q ss_conf 8625
Q gi|254780313|r 197 KKHF 200 (227)
Q Consensus 197 ~~~F 200 (227)
+.+.
T Consensus 305 ~~~~ 308 (355)
T COG0144 305 ERHP 308 (355)
T ss_pred HHCC
T ss_conf 8589
No 17
>PRK08317 hypothetical protein; Provisional
Probab=99.14 E-value=2e-10 Score=85.83 Aligned_cols=97 Identities=28% Similarity=0.272 Sum_probs=72.9
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC----------CCCCCCEEEECCCCHHHHHHHHHHHCCC
Q ss_conf 137967888504553068999997068788327864112133----------3469817830112207999999973138
Q gi|254780313|r 65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM----------EPILGVKFFKFDFLDLDSWEFIRQAIGG 134 (227)
Q Consensus 65 ~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~----------~~i~gv~~~~gDi~~~~~~~~i~~~l~~ 134 (227)
++||++|||+||++|.++..+++++++. ++|+|||+.+- ....++.++++|+.+.. +-++
T Consensus 17 l~pG~~vLDiGcG~G~~~~~la~~~g~~---~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~lp-------~~d~ 86 (241)
T PRK08317 17 VQPGERVLDVGCGPGNDLRELADRVGPE---GRVVGIDRSEAMLALARERAAGLLSNVEFVRGDADGLP-------FPDE 86 (241)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHCCC---CEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCHHHCC-------CCCC
T ss_conf 9997999996641749999999974999---78999969889999999998622896499955464358-------9888
Q ss_pred CCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 874897532021102221015788989998898764114877469999
Q gi|254780313|r 135 NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK 182 (227)
Q Consensus 135 ~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K 182 (227)
.||+|+|..+..- .-|. ..+|.-+.++|||||.+|+=
T Consensus 87 sfD~v~~~~~l~h----~~d~-------~~~l~e~~RvLkPGG~~vi~ 123 (241)
T PRK08317 87 SFDAVRSDRVLQH----LEDP-------RRALAEMARVLRPGGRAVVL 123 (241)
T ss_pred CCCEEEHHHHHHH----CCCH-------HHHHHHHHHHCCCCCEEEEE
T ss_conf 7045622115762----2589-------99999999981888389999
No 18
>pfam01189 Nol1_Nop2_Fmu NOL1/NOP2/sun family.
Probab=99.09 E-value=2e-09 Score=79.56 Aligned_cols=126 Identities=22% Similarity=0.295 Sum_probs=82.1
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CC--CCCCCEEEECCCCHHHHHHHHHHHCC
Q ss_conf 13796788850455306899999706878832786411213---------33--46981783011220799999997313
Q gi|254780313|r 65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------ME--PILGVKFFKFDFLDLDSWEFIRQAIG 133 (227)
Q Consensus 65 ~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~--~i~gv~~~~gDi~~~~~~~~i~~~l~ 133 (227)
.+||..|||+||||||-|-.+++.+.+ .|.|+|+|+.+ ++ .+.++.....|.+... ....+
T Consensus 82 p~~g~~VLD~CAaPGgKt~~la~l~~~---~g~i~A~D~~~~Rl~~l~~~~~r~g~~~~~~~~~d~~~~~-----~~~~~ 153 (277)
T pfam01189 82 PQEDEFILDMCAAPGGKTTHIAELMKN---EGTVVAVDRNKQRLKRVYANIQRLGVFNIIVQEGDARQID-----QKLLG 153 (277)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHCCC---CCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCC-----CCCCC
T ss_conf 899998988367888169999987589---8779983797899999999999759974799966444557-----43466
Q ss_pred CCCCEEEECCCHHHCCCCCC-------------HHHHHHHHHHHHHHHHHHCCCCCCEEEEE---EECCCCHHHHHHHHH
Q ss_conf 88748975320211022210-------------15788989998898764114877469999---305999899999998
Q gi|254780313|r 134 GNPDLVLSDMAYPTIGHRKI-------------DHLRTMSLCEAATFFALEMLNIGGDFLVK---TFQGGTTNDILCLLK 197 (227)
Q Consensus 134 ~~~DlVlSDmapn~SG~~~~-------------D~~~~~~L~~~al~~A~~~Lk~gG~fV~K---~F~G~~~~~l~~~l~ 197 (227)
+.||.|+.| +.+||...+ |-....++....|.-|...|+|||.+|-= ++.-+....+...++
T Consensus 154 ~~fD~vLvD--aPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eENe~vV~~fL~ 231 (277)
T pfam01189 154 GEFDRILLD--APCSGTGVIRRDPDIKWLRREADIAQLAELQKELLKAAWDLVKPGGVLVYSTCSVLPEENEAVIKYFLQ 231 (277)
T ss_pred CCCCEEEEC--CCCCCCCEECCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHH
T ss_conf 666579972--898898634558531211999999999999999999999971769989999499998998999999998
Q ss_pred HHC
Q ss_conf 625
Q gi|254780313|r 198 KHF 200 (227)
Q Consensus 198 ~~F 200 (227)
++.
T Consensus 232 ~~~ 234 (277)
T pfam01189 232 KRP 234 (277)
T ss_pred HCC
T ss_conf 699
No 19
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase; InterPro: IPR011023 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are primarily restricted to the euryarchaeota and proteobacteria respectively; where they are either described as either nucleolar protein or tRNA/rRNA cytosine-C5-methylase. They all have the S-adenosyl methionine (SAM) binding domain and are related to bacterial Fmu (16S rRNA m5C 967 methyltransferase) where the structure of the methyl transferase domain has been determined . In the eukaryota, the majority are annotated as being 'nucleolar protein'. None of the eukaryotic members in this family have a the SAM binding signature. Despite this, the yeast Nop2p is a probable RNA m(5)C methyltransferase, essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis ; localised to the nucleolus and is essential for viability . Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing . There is substantial identity between Nop2p and human p120 (NOL1), which is also called the proliferation-associated nucleolar antigen , . .
Probab=99.04 E-value=2.1e-09 Score=79.35 Aligned_cols=129 Identities=20% Similarity=0.281 Sum_probs=84.7
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC------CCCCC-----CCEEEECCCCHHHHHHHHHHHCCCC
Q ss_conf 796788850455306899999706878832786411213------33469-----8178301122079999999731388
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD------MEPIL-----GVKFFKFDFLDLDSWEFIRQAIGGN 135 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~------~~~i~-----gv~~~~gDi~~~~~~~~i~~~l~~~ 135 (227)
++++|||++|||||-|-+++.++.++ |.|+|+|.+. +.+|. ++..+.-|- +.. .......
T Consensus 77 ~~~~vlD~AAaPGgKTT~is~~m~N~---G~i~Ane~~ksR~k~L~~NI~R~G~~n~~v~~~Dg-----R~f-~~~~~~~ 147 (284)
T TIGR00446 77 EKERVLDMAAAPGGKTTQISALMKNE---GAIVANEVSKSRTKVLIANINRMGVLNVAVINVDG-----RKF-GAVVLKM 147 (284)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHCCC---CEEEEECCCCCCCHHHHHHHHHHHHEEEEEEECCC-----CHH-HHHHCCC
T ss_conf 88879997408896489999986588---51899737634106678655562100333241376-----300-1231443
Q ss_pred ---CCEEEECCCHHHCCCCCC-------------HHHHHHHHHHHHHHHHHHCCCC----CCEEEEEE--ECCCCHHHHH
Q ss_conf ---748975320211022210-------------1578898999889876411487----74699993--0599989999
Q gi|254780313|r 136 ---PDLVLSDMAYPTIGHRKI-------------DHLRTMSLCEAATFFALEMLNI----GGDFLVKT--FQGGTTNDIL 193 (227)
Q Consensus 136 ---~DlVlSDmapn~SG~~~~-------------D~~~~~~L~~~al~~A~~~Lk~----gG~fV~K~--F~G~~~~~l~ 193 (227)
||-||-| || |||..-+ |....-.|....+..|...|++ ||.+|-=+ ..-+|-++++
T Consensus 148 eifFD~iLLD-AP-CSG~GvI~KD~~~~~~~~~eD~~~~s~lQkeL~~~A~d~lk~nskhGGv~VYSTCsl~~eENE~V~ 225 (284)
T TIGR00446 148 EIFFDRILLD-AP-CSGEGVIRKDPSRKKNRSEEDILEISKLQKELILAAFDALKPNSKHGGVLVYSTCSLEVEENEEVV 225 (284)
T ss_pred EEEEEEEEEC-CC-CCCCCEEEECHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCHHHH
T ss_conf 0343214525-78-798833765723311477245776467679999999875044566688889850327712274899
Q ss_pred HHHHHHCCEEEEE
Q ss_conf 9998625846997
Q gi|254780313|r 194 CLLKKHFQKVIHV 206 (227)
Q Consensus 194 ~~l~~~F~~V~~~ 206 (227)
..+.+....|..+
T Consensus 226 dy~L~~r~~v~e~ 238 (284)
T TIGR00446 226 DYLLRKRPDVVEE 238 (284)
T ss_pred HHHHCCCCCEEEE
T ss_conf 9986179970775
No 20
>pfam01209 Ubie_methyltran ubiE/COQ5 methyltransferase family.
Probab=99.00 E-value=1.9e-09 Score=79.72 Aligned_cols=116 Identities=20% Similarity=0.301 Sum_probs=79.5
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC-C----------CCCCCCEEEECCCCHHHHHHHHHHHCC
Q ss_conf 13796788850455306899999706878832786411213-3----------346981783011220799999997313
Q gi|254780313|r 65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-M----------EPILGVKFFKFDFLDLDSWEFIRQAIG 133 (227)
Q Consensus 65 ~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~-~----------~~i~gv~~~~gDi~~~~~~~~i~~~l~ 133 (227)
+++|+.||||||++|-++..+++.+++. +.|+|||+.+ | ....++++++||..+... -+
T Consensus 45 ~~~g~~vLDl~cGTG~~~~~l~~~~~~~---~~v~gvD~S~~ML~~a~~k~~~~~~~~i~~~~~da~~lpf-------~d 114 (233)
T pfam01209 45 VKRGNKFLDVAGGTGDWTFGLSDSAGSS---GKVVGLDINENMLKEGEKKAKEEGKYNIEFLQGNAEELPF-------ED 114 (233)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHCCC---CEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC-------CC
T ss_conf 9999989982540588999999984999---7499996999999999999985699983699821666886-------66
Q ss_pred CCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHCC
Q ss_conf 88748975320211022210157889899988987641148774699993059998999999986258
Q gi|254780313|r 134 GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQ 201 (227)
Q Consensus 134 ~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~~~F~ 201 (227)
..||+|+|=. |.+..+.. ..++.-+.++|||||.|++==|.-+.-.-+......+|.
T Consensus 115 ~sfD~v~~~f-----glrn~~d~------~~al~E~~RVLKPGG~l~ilefs~P~~~~~~~~~~~Y~~ 171 (233)
T pfam01209 115 DSFDIVTISF-----GLRNFPDY------LKVLKEAFRVLKPGGRVVCLEFSKPENPLLSQAYELYFK 171 (233)
T ss_pred CCCCHHHHHH-----HHHCCCCH------HHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 5657314210-----12125888------999999998727897899997888877799999999995
No 21
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.98 E-value=2.8e-09 Score=78.57 Aligned_cols=103 Identities=22% Similarity=0.315 Sum_probs=74.4
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC-C-----------CCCCCCEEEECCCCHHHHHHHHHHHC
Q ss_conf 13796788850455306899999706878832786411213-3-----------34698178301122079999999731
Q gi|254780313|r 65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-M-----------EPILGVKFFKFDFLDLDSWEFIRQAI 132 (227)
Q Consensus 65 ~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~-~-----------~~i~gv~~~~gDi~~~~~~~~i~~~l 132 (227)
++||++|||+||++|-.+..+++..++ .+.|+|+|+.+ | ...+++.++++|..+.. +-
T Consensus 49 ~~~g~~vLDvgcGTG~~~~~l~~~~~~---~~~v~g~D~S~~ML~~A~~k~~~~~~~~~i~~~~~da~~lp-------f~ 118 (239)
T PRK00216 49 VRPGDKVLDLACGTGDLAIALAKAVGE---TGEVVGLDFSEGMLAVGREKLLDKGLSGNVEFVQGDAEALP-------FP 118 (239)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCC---CCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCC-------CC
T ss_conf 899998988457763879999997299---76799991988999999999997389888507982355688-------87
Q ss_pred CCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC
Q ss_conf 38874897532021102221015788989998898764114877469999305999
Q gi|254780313|r 133 GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT 188 (227)
Q Consensus 133 ~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~ 188 (227)
++.||+|++=. |.+..... ..+|.-+.++|+|||.|++==|.-++
T Consensus 119 d~sfD~v~~~f-----~l~~~~d~------~~~l~E~~RVLkPGG~l~ilefs~p~ 163 (239)
T PRK00216 119 DNSFDAVTIAF-----GLRNVPDI------DKALREMYRVLKPGGRLVILEFSKPT 163 (239)
T ss_pred CCCCCCCCCCC-----EEEECCCH------HHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf 66676500261-----56714867------99999999876648089999758999
No 22
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase B; InterPro: IPR004573 This family consists of bacterial sequences related to Escherichia coli rsmB, an rRNA SAM-dependent methyltransferase. All, are likely to be functionally equivalent and based on comparison of core motifs would appear to belong to a larger superfamily of S-adenosyl-methionine (AdoMet)-dependent RNA m5C methyltransferases . In E. coli, originally, the reading frame, encoding this protein, was interpreted as two reading frames, fmu and fmv. It has since been renamed, rsmB (Alternate Gene Symbols: rrmB, sun, fmu, fmv, yhdB). The recombinant protein, commonly referred to as Fmu, has been demonstrated to methylate only C967 of the 16S ribosomal RNA and to produce only m5C at that position. . The structure of the E. coli protein (Fmu) has been determined . Fmu contains three subdomains which share structural homology to DNA m5C methyltransferases and two RNA binding protein families. The N-terminal sequence of Fmu shares homology to another (noncatalytic) RNA binding protein, e.g. the ribosomal RNA antiterminator protein NusB (IPR011605 from INTERPRO). The catalytic lobe of Fmu, N1 domain, comprises the conserved core identified in all of the putative RNA m5C MTase sequences. Although the N1 domain is structurally homologous to known RNA binding proteins, there is no clear sequence motif that defines its role in RNA binding and recognition. At the functional centre of the catalytic lobe is the MTase domain of Fmu (residues 232-429), which adopts a fold typical of known AdoMet-dependent methyltransferases. In spite of the lack of a conserved RNA binding motif in the N1 domain, the close association of the N1 and MTase domains suggest that any RNA bound in the active site of the MTase domain is likely to interact with the N1 domain. ; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing.
Probab=98.93 E-value=2.8e-09 Score=78.61 Aligned_cols=126 Identities=18% Similarity=0.228 Sum_probs=86.4
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC-----CCC-CC--CCE---EEECCCCHHHHHH---HHHHH
Q ss_conf 3796788850455306899999706878832786411213-----334-69--817---8301122079999---99973
Q gi|254780313|r 66 QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-----MEP-IL--GVK---FFKFDFLDLDSWE---FIRQA 131 (227)
Q Consensus 66 k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~-----~~~-i~--gv~---~~~gDi~~~~~~~---~i~~~ 131 (227)
+++.+|||+||||||-|-.++++++.. +.|+|+|+-. ++. .+ |.+ .-.+|........ ++. .
T Consensus 270 ~~~E~iLD~CAAPGGKttHI~EL~~~~---g~v~a~D~~~~rl~~~~~~~~RLGl~~i~~~~~~~~~~~~~~W~~e~~-k 345 (487)
T TIGR00563 270 KNEETILDACAAPGGKTTHIAELMPDQ---GQVVALDLHKHRLKRVKENLDRLGLTIIKVEEVDGDKAGPKEWLAEVE-K 345 (487)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHCCCC---CEEEEEECCHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCCCH-H
T ss_conf 988747731148457047677424797---208988621257889999998618837887720256776654445201-0
Q ss_pred CCCCCCEEEECCCHHHCCC-------------CCCHHHHHHHHHHHHHHHHHHCCCCCCEEE---EEEECCCCHHHHHHH
Q ss_conf 1388748975320211022-------------210157889899988987641148774699---993059998999999
Q gi|254780313|r 132 IGGNPDLVLSDMAYPTIGH-------------RKIDHLRTMSLCEAATFFALEMLNIGGDFL---VKTFQGGTTNDILCL 195 (227)
Q Consensus 132 l~~~~DlVlSDmapn~SG~-------------~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV---~K~F~G~~~~~l~~~ 195 (227)
....||-||-|. | |||. +..|.+...+|....|.-....||+||++| |-+-.-++...+.++
T Consensus 346 saa~fDRiLlDa-P-CSg~GvirR~PD~kw~~~~~diA~L~~LQ~~iL~aiaP~vK~GGtLvYsTCt~~p~EN~~qI~aF 423 (487)
T TIGR00563 346 SAAQFDRILLDA-P-CSGTGVIRRHPDIKWLRKPADIARLAELQKEILKAIAPLVKKGGTLVYSTCTVLPEENEEQIEAF 423 (487)
T ss_pred HHHHHCEEEECC-C-CCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHH
T ss_conf 233314215607-8-77443300178755566856517899999999998856535797588861458844328999999
Q ss_pred HH
Q ss_conf 98
Q gi|254780313|r 196 LK 197 (227)
Q Consensus 196 l~ 197 (227)
|.
T Consensus 424 L~ 425 (487)
T TIGR00563 424 LN 425 (487)
T ss_pred HH
T ss_conf 76
No 23
>TIGR00478 tly hemolysin A; InterPro: IPR004538 Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture. The mechanism of action is not well defined. Hemolysin A is induced by sodium ribonucleate, and is produced by pathogenic bacterial strains. Hemolysin A from Treponema hyodysenteriae causes swine dysentry.; GO: 0003723 RNA binding, 0019836 hemolysis by symbiont of host red blood cells.
Probab=98.86 E-value=2.3e-09 Score=79.11 Aligned_cols=101 Identities=22% Similarity=0.252 Sum_probs=69.8
Q ss_pred CHHHHHHHHHC--CHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC------C
Q ss_conf 99999998818--447999999999864583137967888504553068999997068788327864112133------3
Q gi|254780313|r 36 DPYVQRAQLEG--WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM------E 107 (227)
Q Consensus 36 D~y~~~Ak~~g--yrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~------~ 107 (227)
|.-...+..+- |.||+.+||.|+++.|.+.-.+..|||+|++-||||++|.++= .-.|+|||.-.+ .
T Consensus 44 ~~~i~l~~~~~~tfVSRGG~KL~~~L~~F~~~vk~ki~lD~GsS~GGFtd~aL~~G-----Ak~VY~vDVG~~ql~~kLR 118 (240)
T TIGR00478 44 DAKIELVQNPLRTFVSRGGEKLKEALEEFEVDVKNKIVLDVGSSTGGFTDCALQKG-----AKEVYGVDVGYNQLAEKLR 118 (240)
T ss_pred CCCEEEECCCCCEEECCHHHHHHHHCCCCCEEECCEEEEEECCCCCHHHHHHHHCC-----CCEEEEEEECCHHHHHHCC
T ss_conf 76034414777500050458999853543313378689970567304899998705-----8467778603213343236
Q ss_pred CCCCCEEEE-CCCCHHHHHHHHHHHCCC--CCCEEEECCC
Q ss_conf 469817830-112207999999973138--8748975320
Q gi|254780313|r 108 PILGVKFFK-FDFLDLDSWEFIRQAIGG--NPDLVLSDMA 144 (227)
Q Consensus 108 ~i~gv~~~~-gDi~~~~~~~~i~~~l~~--~~DlVlSDma 144 (227)
..+.|..++ .||.---|...+ .++ -+|+=+.|.+
T Consensus 119 ~D~Rv~~~eR~N~rGy~T~~d~---~~~qP~P~lA~~DvS 155 (240)
T TIGR00478 119 QDERVKVLERTNIRGYVTPADI---VKDQPMPDLAVVDVS 155 (240)
T ss_pred CCCEEEEEECCCCCCCCCHHHH---HCCCCCCCHHHHHHH
T ss_conf 3662689645787444665654---078889731444457
No 24
>pfam05175 MTS Methyltransferase small domain. This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases .
Probab=98.84 E-value=5.6e-08 Score=70.47 Aligned_cols=119 Identities=20% Similarity=0.236 Sum_probs=84.3
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC-----------CCCCCCEEEECCCCHHHHHHHHHHHCCC
Q ss_conf 37967888504553068999997068788327864112133-----------3469817830112207999999973138
Q gi|254780313|r 66 QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM-----------EPILGVKFFKFDFLDLDSWEFIRQAIGG 134 (227)
Q Consensus 66 k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~-----------~~i~gv~~~~gDi~~~~~~~~i~~~l~~ 134 (227)
.++.+||||||+.|--+-.++++.+ ...|+++|+.+. ..++++.++++|+.+. ...+
T Consensus 30 ~~~g~vLDlGcG~G~i~~~la~~~p----~~~v~~vDi~~~Al~~a~~N~~~n~l~~v~v~~~D~~~~--------~~~~ 97 (170)
T pfam05175 30 PLGGKVLDLGCGYGVLGAALAKRSP----DLEVTMVDINARALESARANLAANGLENGEVFWSDLYSA--------VEPG 97 (170)
T ss_pred CCCCCEEEECCCCCHHHHHHHHHCC----CCEEEECHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCC--------CCCC
T ss_conf 7899499977648298999999789----867985154499999999999980998489997446665--------7788
Q ss_pred CCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEE--EEEEECCCCHHHHHHHHHHHCCEEEEEC
Q ss_conf 874897532021102221015788989998898764114877469--9993059998999999986258469976
Q gi|254780313|r 135 NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF--LVKTFQGGTTNDILCLLKKHFQKVIHVK 207 (227)
Q Consensus 135 ~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~f--V~K~F~G~~~~~l~~~l~~~F~~V~~~K 207 (227)
+||+|+|.= |--+|. .. ..++.+.-+.-|...|+|||.+ |..-+.+. ...++..|..|..++
T Consensus 98 ~fD~IvsNP-P~h~g~-~~----~~~~~~~~i~~A~~~L~pgG~l~~V~n~~l~y-----~~~l~~~f~~v~~~~ 161 (170)
T pfam05175 98 KFDLIISNP-PFHAGK-AT----DYDVAQRFIAGAARHLKPGGELWIVANRHLGY-----PSLLEELFGNVEVLA 161 (170)
T ss_pred CEEEEEECC-CCCCCC-CC----CHHHHHHHHHHHHHHCCCCCEEEEEEECCCCC-----HHHHHHHHCCEEEEE
T ss_conf 660899897-721142-03----28999999999999616497999999899994-----799998608889997
No 25
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.82 E-value=3.5e-08 Score=71.76 Aligned_cols=141 Identities=21% Similarity=0.193 Sum_probs=89.3
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC-C-----CCCC
Q ss_conf 999999881844799999999986458313796788850455306899999706878832786411213-3-----3469
Q gi|254780313|r 37 PYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-M-----EPIL 110 (227)
Q Consensus 37 ~y~~~Ak~~gyrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~-~-----~~i~ 110 (227)
.|-..|.-+. +++-.|++.-. .++..+||||||++|-.++...+. ...|+|+|+.+ | ....
T Consensus 19 ~Yd~~A~~Q~---~~a~~Ll~~l~----~~~~~~vLDlGcGtG~~t~~l~~~------~~~v~~~Dls~~Ml~~a~~~~~ 85 (251)
T PRK10258 19 HYEQHADLQR---QSADALLAMLP----QRKFTHVLDAGCGPGWMSRYWRER------GSQVTALDLSPPMLAQARQKDA 85 (251)
T ss_pred HHHHHHHHHH---HHHHHHHHHCC----CCCCCCEEEEEEHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHCC
T ss_conf 5877369999---99999997366----578993999831002789999974------9969999598999999987486
Q ss_pred CCEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHH
Q ss_conf 81783011220799999997313887489753202110222101578898999889876411487746999930599989
Q gi|254780313|r 111 GVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTN 190 (227)
Q Consensus 111 gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~ 190 (227)
+..+++||+.... +.++.+|+|+|-++. .|.-|.. .++.-+.++|+|||.|++-+|-...+.
T Consensus 86 ~~~~~~~D~e~Lp-------~~~~sfDli~S~~~l----qW~~d~~-------~~l~e~~rvLkPgG~l~fst~g~~tl~ 147 (251)
T PRK10258 86 ADHYLAGDIESLP-------LATATFDLAWSNLAV----QWCGNLS-------TALRELYRVVRPGGVVAFTTLVQGSLP 147 (251)
T ss_pred CHHHHHCHHHHCC-------CCCCCCCEEEECCCH----HHCCCHH-------HHHHHHHHHCCCCCEEEEECCCCCCHH
T ss_conf 3343536063099-------987882178550404----5259999-------999999964589949999815757689
Q ss_pred HHHHHHHHH--CCEEEEECC
Q ss_conf 999999862--584699768
Q gi|254780313|r 191 DILCLLKKH--FQKVIHVKP 208 (227)
Q Consensus 191 ~l~~~l~~~--F~~V~~~KP 208 (227)
|+...+... +..|..|-|
T Consensus 148 ELr~a~~~vd~~~h~~~f~~ 167 (251)
T PRK10258 148 ELHQAWQAVDERPHANRFLP 167 (251)
T ss_pred HHHHHHHHHCCCCCCCCCCC
T ss_conf 99999998316776678899
No 26
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.78 E-value=9.1e-08 Score=69.14 Aligned_cols=112 Identities=21% Similarity=0.262 Sum_probs=72.7
Q ss_pred HHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCC-----------CCC-CCEEEECCC
Q ss_conf 99999998645831379678885045530689999970687883278641121333-----------469-817830112
Q gi|254780313|r 52 AYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME-----------PIL-GVKFFKFDF 119 (227)
Q Consensus 52 afKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~-----------~i~-gv~~~~gDi 119 (227)
.=||.+|-+|.+| +||++|||+||+=|+-+.||++.- +.+|+||+|.+-. .++ ++++.--|.
T Consensus 58 ~~k~~~~~~kl~L-~~G~~lLDiGCGWG~l~~~aA~~y-----~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~ 131 (283)
T COG2230 58 RAKLDLILEKLGL-KPGMTLLDIGCGWGGLAIYAAEEY-----GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDY 131 (283)
T ss_pred HHHHHHHHHHCCC-CCCCEEEEECCCHHHHHHHHHHHC-----CCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEECCC
T ss_conf 9999999975699-999989874788449999999984-----9979996689999999999999759976607996562
Q ss_pred CHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC
Q ss_conf 207999999973138874897532021102221015788989998898764114877469999305999
Q gi|254780313|r 120 LDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT 188 (227)
Q Consensus 120 ~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~ 188 (227)
.+ +.++||-|+|=++.--=|....|. =+..+..+|+|||.++.-..-+.+
T Consensus 132 rd----------~~e~fDrIvSvgmfEhvg~~~~~~---------ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 132 RD----------FEEPFDRIVSVGMFEHVGKENYDD---------FFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred CC----------CCCCCCEEEEHHHHHHHCCCCHHH---------HHHHHHHHCCCCCEEEEEEECCCC
T ss_conf 10----------324342055600688737102899---------999999645999659999966788
No 27
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.78 E-value=5.5e-08 Score=70.49 Aligned_cols=132 Identities=19% Similarity=0.229 Sum_probs=85.3
Q ss_pred HCCHHHHHH-HHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CCCCCCCEE
Q ss_conf 184479999-9999986458313796788850455306899999706878832786411213---------334698178
Q gi|254780313|r 45 EGWRARSAY-KLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------MEPILGVKF 114 (227)
Q Consensus 45 ~gyrsRaaf-KL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~~i~gv~~ 114 (227)
+||.|---. -..||-+..+| +|+++|||+||+=||=+.|++++-+ +.|+|||+.+ ...-..|.|
T Consensus 30 eGf~SpGG~e~~~~~l~~l~L-~~~~kVLDvGCG~GG~a~~LA~~yg-----~~V~GiDls~~~~~~A~er~~~~~~v~f 103 (263)
T PTZ00098 30 EDYISSGGIEATKKILSDIEL-DANSKVLDIGSGLGGGCKYINEKYG-----AHTHGIDICEKIVNIAKERNQDKAKIEF 103 (263)
T ss_pred CCCCCCCCHHHHHHHHHCCCC-CCCCEEEEECCCCCHHHHHHHHHCC-----CEEEEEECCHHHHHHHHHHCCCCCCEEE
T ss_conf 898899956899999850488-9998688868887889999999749-----8799985889999999985512585489
Q ss_pred EECCCCHHHHHHHHHHHCCCCCCEEEEC-CCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEC-C---CCH
Q ss_conf 3011220799999997313887489753-2021102221015788989998898764114877469999305-9---998
Q gi|254780313|r 115 FKFDFLDLDSWEFIRQAIGGNPDLVLSD-MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ-G---GTT 189 (227)
Q Consensus 115 ~~gDi~~~~~~~~i~~~l~~~~DlVlSD-mapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~-G---~~~ 189 (227)
.++|.++.. +.++.||+|.|= .-..++ ..|-.. .+.=+.++|||||.|++--|- + ...
T Consensus 104 ~~~d~~~~~-------f~d~sFDvV~S~dailHip---~~DK~~-------l~~e~~RvLKPGG~llitDw~~~~~~~~s 166 (263)
T PTZ00098 104 EAKDILKKD-------FPENNFDLIYSRDAILHLS---LADKKK-------LFEKCYKWLKPNGILLITDYCADEIENWD 166 (263)
T ss_pred EECCCCCCC-------CCCCCEEEEEEEHHHHCCC---HHHHHH-------HHHHHHHHCCCCCEEEEEEECCCCCCCCC
T ss_conf 967853677-------8867455898750223088---243999-------99999998468878999750135789973
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999862
Q gi|254780313|r 190 NDILCLLKKH 199 (227)
Q Consensus 190 ~~l~~~l~~~ 199 (227)
.++...++..
T Consensus 167 ~~~~~yi~~r 176 (263)
T PTZ00098 167 DEFKAYIKKR 176 (263)
T ss_pred HHHHHHHHHC
T ss_conf 9899999846
No 28
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.73 E-value=4.1e-08 Score=71.29 Aligned_cols=94 Identities=22% Similarity=0.255 Sum_probs=65.9
Q ss_pred EEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC-----------CCCCCCEEEECCCCHHHHHHHHHHHCCCCCCE
Q ss_conf 7888504553068999997068788327864112133-----------34698178301122079999999731388748
Q gi|254780313|r 70 RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM-----------EPILGVKFFKFDFLDLDSWEFIRQAIGGNPDL 138 (227)
Q Consensus 70 ~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~-----------~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~Dl 138 (227)
+|||+||++|.++...++. ....|+|+|+.+. ...+++.++++|+.+... ...++||+
T Consensus 1 rVLDiGcG~G~~~~~l~~~-----~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~------~~~~~fD~ 69 (107)
T cd02440 1 RVLDLGCGTGALALALASG-----PGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP------EADESFDV 69 (107)
T ss_pred CEEEEECCCCHHHHHHHHC-----CCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEECCCHHHCCH------HHCCCEEE
T ss_conf 9999988879999999956-----898899998988899999998753278864671488678863------20575319
Q ss_pred EEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf 9753202110222101578898999889876411487746999930
Q gi|254780313|r 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF 184 (227)
Q Consensus 139 VlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F 184 (227)
|+|+..... ..+. ...++.-+.++|+|||.|++.+.
T Consensus 70 V~~~~~~~~----~~~~------~~~~l~~~~~~LkpgG~~~is~~ 105 (107)
T cd02440 70 IISDPPLHH----LVED------LARFLEEARRLLKPGGVLVLTLV 105 (107)
T ss_pred EEEECCEEC----CCCC------HHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 999175010----6518------99999999987485819999998
No 29
>KOG1122 consensus
Probab=98.73 E-value=8.3e-08 Score=69.37 Aligned_cols=129 Identities=21% Similarity=0.232 Sum_probs=82.7
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CC--CCCCCEEEECCCCHHHHHHHHHHHCCC
Q ss_conf 3796788850455306899999706878832786411213---------33--469817830112207999999973138
Q gi|254780313|r 66 QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------ME--PILGVKFFKFDFLDLDSWEFIRQAIGG 134 (227)
Q Consensus 66 k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~--~i~gv~~~~gDi~~~~~~~~i~~~l~~ 134 (227)
+||.+|||+||||||-|-+++.++.. .|.|+|.|-.. .. -+.|......|..+.. ...+++
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn---~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~-----~~~~~~ 311 (460)
T KOG1122 240 QPGERILDMCAAPGGKTTHIAALMKN---TGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFP-----EKEFPG 311 (460)
T ss_pred CCCCEECCHHCCCCCHHHHHHHHHCC---CCEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCC-----CCCCCC
T ss_conf 98871121210799507789998727---7469961354377999998899748774489736763255-----333676
Q ss_pred CCCEEEECCCHHHCC--CCCC-----------HHHHHHHHHHHHHHHHHHCCCCCCEEEEE---EECCCCHHHHHHHHHH
Q ss_conf 874897532021102--2210-----------15788989998898764114877469999---3059998999999986
Q gi|254780313|r 135 NPDLVLSDMAYPTIG--HRKI-----------DHLRTMSLCEAATFFALEMLNIGGDFLVK---TFQGGTTNDILCLLKK 198 (227)
Q Consensus 135 ~~DlVlSDmapn~SG--~~~~-----------D~~~~~~L~~~al~~A~~~Lk~gG~fV~K---~F~G~~~~~l~~~l~~ 198 (227)
.||-||-|+ | ||| .-+. |-.+...|....|.-|...+++||.+|-- +---+++..+-+.|++
T Consensus 312 ~fDRVLLDA-P-CSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV~yaL~K 389 (460)
T KOG1122 312 SFDRVLLDA-P-CSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAVVDYALKK 389 (460)
T ss_pred CCCEEEECC-C-CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHHHHHH
T ss_conf 423145348-7-77775554551013301299998727999999999873115770899985322601228999999970
Q ss_pred HCCEEEE
Q ss_conf 2584699
Q gi|254780313|r 199 HFQKVIH 205 (227)
Q Consensus 199 ~F~~V~~ 205 (227)
+ -.|+.
T Consensus 390 ~-p~~kL 395 (460)
T KOG1122 390 R-PEVKL 395 (460)
T ss_pred C-CCEEE
T ss_conf 9-86275
No 30
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.72 E-value=8.1e-08 Score=69.46 Aligned_cols=110 Identities=21% Similarity=0.295 Sum_probs=79.8
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CC--CCCCCEEEECCCCHHHHHHHHHHHCCC
Q ss_conf 3796788850455306899999706878832786411213---------33--469817830112207999999973138
Q gi|254780313|r 66 QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------ME--PILGVKFFKFDFLDLDSWEFIRQAIGG 134 (227)
Q Consensus 66 k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~--~i~gv~~~~gDi~~~~~~~~i~~~l~~ 134 (227)
+||++|||+||+.|-|+--.++.++ .+.|+|+|+.+ .. .+.++.|++||..+.. +-+.
T Consensus 50 ~~g~~vLDva~GTGd~a~~~~k~~g----~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LP-------f~D~ 118 (238)
T COG2226 50 KPGDKVLDVACGTGDMALLLAKSVG----TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLP-------FPDN 118 (238)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHCCCCCCEEEEEECHHHCC-------CCCC
T ss_conf 9998799966873199999999658----8449999799999999998743247663279970565498-------8887
Q ss_pred CCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHH
Q ss_conf 874897532021102221015788989998898764114877469999305999899999998
Q gi|254780313|r 135 NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197 (227)
Q Consensus 135 ~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~ 197 (227)
.||+|++. .|.+.+++. ..||.-+.++|+|||.++|==|.-.....+...+.
T Consensus 119 sFD~vt~~-----fglrnv~d~------~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~ 170 (238)
T COG2226 119 SFDAVTIS-----FGLRNVTDI------DKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYI 170 (238)
T ss_pred CCCEEEEE-----EHHHCCCCH------HHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHH
T ss_conf 65889865-----123527878------99999998762687499998768998601699999
No 31
>pfam02353 CMAS Cyclopropane-fatty-acyl-phospholipid synthase. This family consist of Cyclopropane-fatty-acyl-phospholipid synthase or CFA synthase EC:2.1.1.79 this enzyme catalyse the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid <= S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid.
Probab=98.68 E-value=2.2e-07 Score=66.75 Aligned_cols=109 Identities=22% Similarity=0.284 Sum_probs=73.2
Q ss_pred HHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC---------CC--CC-CCEEEECCCC
Q ss_conf 999999864583137967888504553068999997068788327864112133---------34--69-8178301122
Q gi|254780313|r 53 YKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM---------EP--IL-GVKFFKFDFL 120 (227)
Q Consensus 53 fKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~---------~~--i~-gv~~~~gDi~ 120 (227)
-||..|-++-+| +||++|||+||+=||++.++++..+ ++|+||.|.+- +. ++ .|.+...|..
T Consensus 49 ~Kl~~i~~~l~l-~~g~~vLDiGCGWG~~a~~~a~~~g-----~~v~giTlS~~Q~~~~~~r~~~~gl~~~v~v~~~Dyr 122 (273)
T pfam02353 49 AKLDLILDKLGL-KPGMTLLDIGCGWGGLMRRAAERYD-----VNVVGLTLSKNQYKLARQRVAAEGLQRKVEVLLQDYR 122 (273)
T ss_pred HHHHHHHHHCCC-CCCCEEEEECCCCHHHHHHHHHHCC-----CEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEECCHH
T ss_conf 999999986588-9999899978880899999998479-----5189997978999999999987087432120006265
Q ss_pred HHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECC
Q ss_conf 079999999731388748975320211022210157889899988987641148774699993059
Q gi|254780313|r 121 DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG 186 (227)
Q Consensus 121 ~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G 186 (227)
+. .+++|.|+|=.+.---|.+.. ..-+.-...+|+|||.+++-.+-.
T Consensus 123 d~----------~~~fD~IvSiem~Ehvg~~~~---------~~~f~~i~~~LkpgG~~~iq~i~~ 169 (273)
T pfam02353 123 DF----------DEPFDRIVSVGMFEHVGHENY---------DTFFKKLYNLLPPGGLMLLHTITG 169 (273)
T ss_pred HC----------CCCCCEEEEEHHHHHCCHHHH---------HHHHHHHHHHCCCCCEEEEEEEEC
T ss_conf 47----------666666776516876287779---------999999998658897399999942
No 32
>TIGR02072 BioC biotin biosynthesis protein BioC; InterPro: IPR011814 This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulphur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.; GO: 0009102 biotin biosynthetic process.
Probab=98.64 E-value=5.8e-08 Score=70.38 Aligned_cols=137 Identities=23% Similarity=0.312 Sum_probs=98.0
Q ss_pred CHHHHHHHHHCCHHHHHHHHHHHHHHCCCCC-CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC-C----CCC
Q ss_conf 9999999881844799999999986458313-796788850455306899999706878832786411213-3----346
Q gi|254780313|r 36 DPYVQRAQLEGWRARSAYKLLQINEKHQILQ-SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-M----EPI 109 (227)
Q Consensus 36 D~y~~~Ak~~gyrsRaafKL~eId~kf~l~k-~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~-~----~~i 109 (227)
+.|=+.|+-|- ..+.+|+++-+....-. .-..|||+||+||-.|....+... ...++++|+.+ | +..
T Consensus 7 ~~Yd~~A~~Qr---~~~~~Ll~~L~~~~~~~~~~~~vLd~GcGTG~~t~~l~~~~~----~~~~~a~D~~~~ml~~a~~~ 79 (272)
T TIGR02072 7 KTYDRHAKIQR---EMAKRLLALLKEKRPSHFEPASVLDIGCGTGYLTRALLKRFP----QAELIALDISEEMLAQAKEK 79 (272)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHHCC----CCEEHHHHCCHHHHHHHHHH
T ss_conf 20566679999---999999998874076544554356512685489999998688----00123333256789999974
Q ss_pred C----------CCEEEECCCCHHHHHHHHHHHCCCC--CCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 9----------8178301122079999999731388--748975320211022210157889899988987641148774
Q gi|254780313|r 110 L----------GVKFFKFDFLDLDSWEFIRQAIGGN--PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177 (227)
Q Consensus 110 ~----------gv~~~~gDi~~~~~~~~i~~~l~~~--~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG 177 (227)
. .+.|++||+.... ..... +|||+|=|| ..+.|.. ..+|.=+.++|+|||
T Consensus 80 ~~~GWW~~~~~~~~f~~gD~E~l~-------~~~~~~~~DLI~Sn~a-----~QW~~~~------~~~l~~l~~~lk~gG 141 (272)
T TIGR02072 80 LSEGWWQKNLKAVQFICGDIEKLP-------LEDSSFKFDLIVSNLA-----LQWCDDL------SQALSELARVLKPGG 141 (272)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHCC-------CCCCCCEEEHHHHHHH-----HHHCCCH------HHHHHHHHHHCCCCC
T ss_conf 467886576045666663777178-------8766303412756358-----8710478------899999997528796
Q ss_pred EEEEEEECCCCHHHHHHHHH
Q ss_conf 69999305999899999998
Q gi|254780313|r 178 DFLVKTFQGGTTNDILCLLK 197 (227)
Q Consensus 178 ~fV~K~F~G~~~~~l~~~l~ 197 (227)
.++.=+|--+.+.||....+
T Consensus 142 ~l~FStf~~~~l~El~~~~~ 161 (272)
T TIGR02072 142 LLAFSTFGPGTLKELRQSFG 161 (272)
T ss_pred EEEEEECCCHHHHHHHHHHH
T ss_conf 89986135413499999999
No 33
>KOG2198 consensus
Probab=98.64 E-value=8.9e-08 Score=69.19 Aligned_cols=153 Identities=16% Similarity=0.094 Sum_probs=81.8
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------C--CCCCCCEEEECCCCHHHHHH--HHHHH
Q ss_conf 13796788850455306899999706878832786411213---------3--34698178301122079999--99973
Q gi|254780313|r 65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------M--EPILGVKFFKFDFLDLDSWE--FIRQA 131 (227)
Q Consensus 65 ~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~--~~i~gv~~~~gDi~~~~~~~--~i~~~ 131 (227)
++|++.|||+||||||-|--..+-+-..-..|.|++-|..+ + -|.++....+.|........ .-...
T Consensus 153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~ 232 (375)
T KOG2198 153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDK 232 (375)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCEEEECCCCEECCCCCCCCCCHH
T ss_conf 67998444201389844899999972377777367534578899999999852698433343121100564101467603
Q ss_pred CCCCCCEEEECCCHHHCCCCCC----HHHH----------HHHHHHHHHHHHHHCCCCCCEEEEEEECCCC---HHHHHH
Q ss_conf 1388748975320211022210----1578----------8989998898764114877469999305999---899999
Q gi|254780313|r 132 IGGNPDLVLSDMAYPTIGHRKI----DHLR----------TMSLCEAATFFALEMLNIGGDFLVKTFQGGT---TNDILC 194 (227)
Q Consensus 132 l~~~~DlVlSDmapn~SG~~~~----D~~~----------~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~---~~~l~~ 194 (227)
-...||-|++|. | |||.... +..+ .-.|....|.-++..|++||.+|--+=.... +--+-.
T Consensus 233 ~~~~fDrVLvDV-P-CS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNEaVV~~ 310 (375)
T KOG2198 233 EQLKFDRVLVDV-P-CSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENEAVVQE 310 (375)
T ss_pred HHHHCCEEEEEC-C-CCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 344125368714-5-68984302280276665554113597389999999999872578779994257872002799999
Q ss_pred HHHHHCCEEE---EE--CCCCCCCCCCEEE
Q ss_conf 9986258469---97--6866575582498
Q gi|254780313|r 195 LLKKHFQKVI---HV--KPVASRAESVEMF 219 (227)
Q Consensus 195 ~l~~~F~~V~---~~--KP~aSR~~S~E~Y 219 (227)
.++..+..+. +- -|..-|..+.-.+
T Consensus 311 ~L~~~~~~~~lv~~~~~lp~l~r~~g~t~~ 340 (375)
T KOG2198 311 ALQKVGGAVELVDVSGDLPGLKRMFGSTGW 340 (375)
T ss_pred HHHHHCCCCCCEEECCCCCCCEECCCCCCC
T ss_conf 999836854322303656552514788863
No 34
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.52 E-value=3e-07 Score=65.86 Aligned_cols=94 Identities=19% Similarity=0.142 Sum_probs=64.6
Q ss_pred CEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC-----------CCCC-CCEEEECCCCHHHHHHHHHHHCCCCC
Q ss_conf 67888504553068999997068788327864112133-----------3469-81783011220799999997313887
Q gi|254780313|r 69 RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM-----------EPIL-GVKFFKFDFLDLDSWEFIRQAIGGNP 136 (227)
Q Consensus 69 ~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~-----------~~i~-gv~~~~gDi~~~~~~~~i~~~l~~~~ 136 (227)
.+|||+||+.|+++-++++..+ ...|+|+|+.+- .-+. .+.+.++|..... +.+.|
T Consensus 1 krVLDiGCG~G~~~~~LA~~~p----~~~v~GvDiS~~~ie~Ar~r~~~~gl~~rv~~~~~Da~~lp--------f~d~F 68 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHP----HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDP--------FPDTY 68 (224)
T ss_pred CEEEEEECCCCHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCHHCCC--------CCCCC
T ss_conf 9089983668888999999779----98899997999999999999997299865147852110399--------99983
Q ss_pred CEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEC
Q ss_conf 4897532021102221015788989998898764114877469999305
Q gi|254780313|r 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185 (227)
Q Consensus 137 DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~ 185 (227)
|+|+|=.+- .+.-|. ..++.-+.++|+|||.||+=-|-
T Consensus 69 D~V~s~evl----~Hi~D~-------~~~l~ei~RvLKPGG~lviaD~~ 106 (224)
T smart00828 69 DLVFGFEVI----HHIKDK-------MDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred CEEEHHHHH----HCCCCH-------HHHHHHHHHHCCCCEEEEEEEEE
T ss_conf 567685357----653999-------99999999871798499999853
No 35
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.52 E-value=3.8e-06 Score=59.00 Aligned_cols=123 Identities=19% Similarity=0.267 Sum_probs=76.4
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC-----------CCCCC--CCEEEECCCCHHHHHHHHHHHCC
Q ss_conf 796788850455306899999706878832786411213-----------33469--81783011220799999997313
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-----------MEPIL--GVKFFKFDFLDLDSWEFIRQAIG 133 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~-----------~~~i~--gv~~~~gDi~~~~~~~~i~~~l~ 133 (227)
.|.+||||.|..||||-+|+.- ....|++||+.. ...++ -+.++++|+++. ...... -+
T Consensus 217 ~GkrvLNlFsYTGgfsv~Aa~g-----GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~--l~~~~~-~g 288 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALG-----GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKW--LRKAER-RG 288 (393)
T ss_pred CCCEEEEECCCCCHHHHHHHHC-----CCCCEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHH--HHHHHH-CC
T ss_conf 6876788646676999999866-----997148982657899999999986299710105672239999--999985-59
Q ss_pred CCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE-ECCCCHHHHHHHHHHH
Q ss_conf 88748975320211022210157889899988987641148774699993-0599989999999862
Q gi|254780313|r 134 GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT-FQGGTTNDILCLLKKH 199 (227)
Q Consensus 134 ~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~-F~G~~~~~l~~~l~~~ 199 (227)
.++|||+-| |.+=+....+......=....+..|..+|+|||++++=. ...-....|+..+..-
T Consensus 289 ~~fDlIilD--PPsF~r~k~~~~~~~rdy~~l~~~~~~lL~pgG~l~~~s~~~~~~~~~f~~~i~~a 353 (393)
T COG1092 289 EKFDLIILD--PPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIARA 353 (393)
T ss_pred CCCCEEEEC--CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 955689978--81003582100538989999999999970799689999367766989999999999
No 36
>pfam06460 NSP13 Coronavirus NSP13. This family covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase function.
Probab=98.52 E-value=1.9e-06 Score=60.85 Aligned_cols=145 Identities=23% Similarity=0.246 Sum_probs=89.6
Q ss_pred CCCCC-CCEEEEEE------CCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCC
Q ss_conf 83137-96788850------455306899999706878832786411213334698178301122079999999731388
Q gi|254780313|r 63 QILQS-NRRIVDLG------SSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN 135 (227)
Q Consensus 63 ~l~k~-g~~VlDLG------aaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~i~gv~~~~gDi~~~~~~~~i~~~l~~~ 135 (227)
.+.-| .++|++|| +|||. -|..+-.+ . +..++--||.+...-.+. .+.||-... .++.+
T Consensus 57 tlaVP~nmrVlHlGAgsdkGvaPGt--~VLrqwLP-~--~ailvDnDi~dyvSDa~~-s~~gDc~t~--------~~~~k 122 (300)
T pfam06460 57 TLCVPHNMRVLHLGAGSDKGVAPGS--AVLRQWLP-K--GTILVDNDIVDYVSDADA-SVLGDCHTL--------YTEDK 122 (300)
T ss_pred EEEECCCCEEEEECCCCCCCCCCCH--HHHHHHCC-C--CCEEECCCHHHHHCCCCC-EEECCCEEE--------CCCCE
T ss_conf 1764356379973266556868855--89997588-9--878970751553034561-787132365--------47861
Q ss_pred CCEEEECCCHHHCCCCCCHHH-HHHH-HHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHCCEEEEECCCCCCC
Q ss_conf 748975320211022210157-8898-99988987641148774699993059998999999986258469976866575
Q gi|254780313|r 136 PDLVLSDMAYPTIGHRKIDHL-RTMS-LCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213 (227)
Q Consensus 136 ~DlVlSDmapn~SG~~~~D~~-~~~~-L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~~~F~~V~~~KP~aSR~ 213 (227)
+|+|+|||=-..+ +.+|.. .+.+ ...-...+..+-|.-||++.+|+=+-+-..+|.+.+ .+|.-...|=. +--.
T Consensus 123 ~DliiSDmYd~~~--k~~~~~n~sk~gfF~yl~~~i~~kLALGGSvaiKiTE~Sw~~~LY~l~-~~F~~wt~FCT-~VNa 198 (300)
T pfam06460 123 FDLIISDMYDGRT--KSIDGENNSKEGFFTYICGFIREKLALGGSIAIKITEFSWNAQLYELM-QYFSFWTMFCT-NVNT 198 (300)
T ss_pred EEEEEEECCCCCC--CCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHH-HHHHHEEEEEE-ECCC
T ss_conf 4089764337765--303664343201899999998765405765899987400689999998-54112057641-0267
Q ss_pred CCCEEEEEECCC
Q ss_conf 582498983075
Q gi|254780313|r 214 ESVEMFLLAKGF 225 (227)
Q Consensus 214 ~S~E~Ylv~~gf 225 (227)
.|+|.|+||.+|
T Consensus 199 SSSEaFLigiNy 210 (300)
T pfam06460 199 SSSEAFLIGINY 210 (300)
T ss_pred CCCCEEEEEEEE
T ss_conf 665325898870
No 37
>pfam07021 MetW Methionine biosynthesis protein MetW. This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In Pseudomonas putida, as in gram-positive bacteria and certain fungi, the second and third steps are a direct sulfhydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells.
Probab=98.50 E-value=2.9e-07 Score=65.99 Aligned_cols=77 Identities=16% Similarity=0.221 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCC----CCCCCEEEECCCCHHHHH
Q ss_conf 9999999998645831379678885045530689999970687883278641121333----469817830112207999
Q gi|254780313|r 50 RSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME----PILGVKFFKFDFLDLDSW 125 (227)
Q Consensus 50 RaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~----~i~gv~~~~gDi~~~~~~ 125 (227)
|.-|+++. +++.||.+||||||+.|..+.++.+. .+..++|||+.+-. --.|+..+++|+.+.
T Consensus 1 R~D~~iI~-----~~I~~~srVLDlGCG~G~ll~~L~~~-----k~v~~~GvEid~~~v~~a~~kg~~Vi~~D~d~~--- 67 (193)
T pfam07021 1 RADFRYIA-----RLIPPGSRVLDLGCGDGSLLYLLQEE-----KQVDGRGIELDAAGVAECVAKGLSVIQGDADKG--- 67 (193)
T ss_pred CCHHHHHH-----HHCCCCCEEEEECCCCCHHHHHHHHC-----CCCCEEEECCCHHHHHHHHHCCCCEECCCHHHC---
T ss_conf 94689999-----86589698998368898999999876-----698769833899999999864795450774459---
Q ss_pred HHHHHHCCCCCCEEEE
Q ss_conf 9999731388748975
Q gi|254780313|r 126 EFIRQAIGGNPDLVLS 141 (227)
Q Consensus 126 ~~i~~~l~~~~DlVlS 141 (227)
+..+.+..||+|++
T Consensus 68 --l~~f~d~sFD~VIl 81 (193)
T pfam07021 68 --LEHFPDKSFDYVIL 81 (193)
T ss_pred --HHHCCCCCCCEEEH
T ss_conf --74577678037869
No 38
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities . Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity.
Probab=98.49 E-value=9e-07 Score=62.88 Aligned_cols=137 Identities=20% Similarity=0.273 Sum_probs=93.5
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCC-----CCEEEEEECCCC------------CC-
Q ss_conf 844799999999986458313796788850455306899999706878-----832786411213------------33-
Q gi|254780313|r 46 GWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA-----NNTRVVAIDILD------------ME- 107 (227)
Q Consensus 46 gyrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~-----~~~~VigVDl~~------------~~- 107 (227)
.||-|++=++.+- .-.+++..|||+||+-|=|+--.++..+..+ ..+.|+|+|+.+ .+
T Consensus 26 ~Wr~~~~~~~~~~----~E~k~~~~~LDvA~GTGD~a~~~~k~~~~~~~a~~~~~~~vtg~D~S~~ML~~a~kk~~~~~r 101 (242)
T TIGR01934 26 LWRRRAVKLIGVQ----LEGKKGQKVLDVACGTGDLAIELAKKAGKVGKAAETERAKVTGVDFSEEMLEVAKKKAPNEER 101 (242)
T ss_pred HHHHHHHHHHHHH----CCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHH
T ss_conf 9999999987862----368888977887238399999998635755533577633789870798899999874134200
Q ss_pred --CCCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEC
Q ss_conf --469817830112207999999973138874897532021102221015788989998898764114877469999305
Q gi|254780313|r 108 --PILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185 (227)
Q Consensus 108 --~i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~ 185 (227)
...++.|++||..+... -+..||+|+. |. |.+++-+. ..||.=+.++|||||.|||==|.
T Consensus 102 ~~~~~~~~f~~~dA~~LPF-------~D~sFD~~Ti--aF---GlRN~~d~------~~aL~E~~RVLKpgG~l~iLEf~ 163 (242)
T TIGR01934 102 KALSANVSFIEADAEALPF-------EDNSFDAVTI--AF---GLRNVTDI------QKALREMYRVLKPGGRLVILEFS 163 (242)
T ss_pred HHHHCCCHHEECHHHCCCC-------CCCCEEEEEE--EC---CCCCCCCH------HHHHHHHHHCCCCCCEEEEECCC
T ss_conf 3332164211000550879-------9862444664--02---55474686------78987731101889879984078
Q ss_pred CCCHHHHHHHH-HHHCCEEE
Q ss_conf 99989999999-86258469
Q gi|254780313|r 186 GGTTNDILCLL-KKHFQKVI 204 (227)
Q Consensus 186 G~~~~~l~~~l-~~~F~~V~ 204 (227)
-+....+++.+ +-+|..|-
T Consensus 164 ~P~~~~~~~~~Y~~Y~~~v~ 183 (242)
T TIGR01934 164 KPANGAFLKKFYKFYLKNVL 183 (242)
T ss_pred CCCCHHHHHHHHHHHHHCHH
T ss_conf 67641688999998850003
No 39
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=98.44 E-value=3.6e-07 Score=65.36 Aligned_cols=86 Identities=28% Similarity=0.343 Sum_probs=61.0
Q ss_pred CHHHHHHHHHHHHHHC-------CCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCC-C---CCCEEE
Q ss_conf 4479999999998645-------8313796788850455306899999706878832786411213334-6---981783
Q gi|254780313|r 47 WRARSAYKLLQINEKH-------QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP-I---LGVKFF 115 (227)
Q Consensus 47 yrsRaafKL~eId~kf-------~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~-i---~gv~~~ 115 (227)
-+|||+.||+|--..| .-+.||+.-+||||+|||||=...++ ...|.+||--+|.+ + .-|...
T Consensus 184 APSRStLKLEEA~~tfip~~E~~~rL~~~M~avDLGAcPGGWTyqLVkr------~m~V~aVDng~ma~sL~dtg~v~h~ 257 (358)
T COG2933 184 APSRSTLKLEEAFHTFIPRDEWDKRLAPGMWAVDLGACPGGWTYQLVKR------NMRVYAVDNGPMAQSLMDTGQVTHL 257 (358)
T ss_pred CCCHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEECCCCCCCCCHHHHHC------CEEEEEECCCHHHHHHHCCCCEEEE
T ss_conf 8852456589999986580166664067865642266898622542315------6089994362222656326652444
Q ss_pred ECCCCHHHHHHHHHHHCCCCCCEEEECCCH
Q ss_conf 011220799999997313887489753202
Q gi|254780313|r 116 KFDFLDLDSWEFIRQAIGGNPDLVLSDMAY 145 (227)
Q Consensus 116 ~gDi~~~~~~~~i~~~l~~~~DlVlSDmap 145 (227)
..|-+.-. - -..++|-.+|||--
T Consensus 258 r~DGfk~~------P-~r~~idWmVCDmVE 280 (358)
T COG2933 258 REDGFKFR------P-TRSNIDWMVCDMVE 280 (358)
T ss_pred ECCCCCCC------C-CCCCCCEEEEEHHC
T ss_conf 13473036------6-78877568752012
No 40
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.38 E-value=3.7e-06 Score=59.07 Aligned_cols=109 Identities=25% Similarity=0.307 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCC------CCCC--CEEEECCCCHH
Q ss_conf 999999998645831379678885045530689999970687883278641121333------4698--17830112207
Q gi|254780313|r 51 SAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME------PILG--VKFFKFDFLDL 122 (227)
Q Consensus 51 aafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~------~i~g--v~~~~gDi~~~ 122 (227)
-.-||..|-++-+| +||+.|||+||+=||+..+|++..| ++|.||.|..-+ .+.| |.+...|.
T Consensus 152 Q~~Kl~~i~~kl~l-~~G~~VLeIGcGWGgla~~aA~~~g-----~~VtgiTlS~eQ~~~a~~r~~gl~v~v~l~DY--- 222 (383)
T PRK11705 152 QEAKLDLICRKLQL-KPGMRVLDIGCGWGGLARYAAEHYG-----VSVVGVTISAEQQKLAQERCAGLPVEIRLQDY--- 222 (383)
T ss_pred HHHHHHHHHHHCCC-CCCCEEEEECCCHHHHHHHHHHHCC-----CEEEEEECCHHHHHHHHHHHCCCCCEEEECCH---
T ss_conf 99999999986489-9999798857874999999999749-----75999858899999999997389878997152---
Q ss_pred HHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf 99999997313887489753202110222101578898999889876411487746999930
Q gi|254780313|r 123 DSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF 184 (227)
Q Consensus 123 ~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F 184 (227)
+ .+.+++|-|+|=.+.-.-|.+.. ..-+..+.++|+|||.+++-..
T Consensus 223 --R-----d~~g~fD~IvSIeM~EhVG~~~~---------~~yF~~i~~lLkp~G~~~lqtI 268 (383)
T PRK11705 223 --R-----DLNGQFDRIVSVGMFEHVGPKNY---------RTYFEVVDRCLKPDGLFLLHTI 268 (383)
T ss_pred --H-----HCCCCCCEEEEEEHHHHCCHHHH---------HHHHHHHHHHCCCCCEEEEEEE
T ss_conf --4-----43677355999714865287779---------9999999985699973999993
No 41
>PRK05134 3-demethylubiquinone-9 3-methyltransferase; Provisional
Probab=98.32 E-value=2.9e-06 Score=59.71 Aligned_cols=96 Identities=21% Similarity=0.288 Sum_probs=62.8
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC----------CCCCCCEEEECCCCHHHHHHHHHHHCCCC
Q ss_conf 37967888504553068999997068788327864112133----------34698178301122079999999731388
Q gi|254780313|r 66 QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM----------EPILGVKFFKFDFLDLDSWEFIRQAIGGN 135 (227)
Q Consensus 66 k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~----------~~i~gv~~~~gDi~~~~~~~~i~~~l~~~ 135 (227)
-.|.+|||+||+.|-.++.++++ +..|+|||+.+- +.--.+.+.++|+.+.. ....+.
T Consensus 47 l~G~~ILDVGCGgG~lse~LAr~------Ga~VtGID~S~~~I~~Ar~ha~~~~l~i~y~~~~~e~l~------~~~~~~ 114 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARL------GATVTGIDASEENIEVARLHALESGLKIDYRQITAEELA------AEHPGQ 114 (233)
T ss_pred CCCCEEEEECCCCCHHHHHHHHC------CCEEEEECCCHHHHHHHHHHHHHCCCCCEEEECCHHHHH------HHCCCC
T ss_conf 68998999755897112899967------997999879989999999985644345116751476654------305786
Q ss_pred CCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf 7489753202110222101578898999889876411487746999930
Q gi|254780313|r 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF 184 (227)
Q Consensus 136 ~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F 184 (227)
||+|+|=- .+.|-.- -...+.-+.++|||||.+++-+.
T Consensus 115 FDvV~~~E--------VlEHV~d---~~~~l~~~~rlLKPGG~l~lsTi 152 (233)
T PRK05134 115 FDVVTCME--------MLEHVPD---PASFIRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred EEEEEEEH--------HHHHCCC---HHHHHHHHHHHHCCCCEEEEECC
T ss_conf 34774421--------4775389---99999999997389914999726
No 42
>TIGR03534 RF_mod_HemK protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK, a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. However, the family is diverse enough that even many members of the seed alignment do not score above the seed alignment, which was set high enough to exclude all instances of PrmB.
Probab=98.28 E-value=1.9e-05 Score=54.58 Aligned_cols=133 Identities=23% Similarity=0.300 Sum_probs=87.4
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------C--CCCCCCEEEECCCCHHHHHHHHHHHCCCC
Q ss_conf 796788850455306899999706878832786411213---------3--34698178301122079999999731388
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------M--EPILGVKFFKFDFLDLDSWEFIRQAIGGN 135 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~--~~i~gv~~~~gDi~~~~~~~~i~~~l~~~ 135 (227)
...+||||||+.|--.-.+++..+ +..|+|+|+.+ + ..+.++.|+++|+++.- ..++
T Consensus 87 ~~~~ilDlgtGSG~I~i~la~~~~----~~~v~~~Dis~~Al~~A~~N~~~~~~~~v~~~~~d~~~~~--------~~~~ 154 (251)
T TIGR03534 87 GPLKVLDLGTGSGAIALALAKERP----DARVTAVDISPEALAVARKNAKRLGLENVRFLKSDWFEPL--------PGGK 154 (251)
T ss_pred CCCEEEEECCCHHHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHCC--------CCCC
T ss_conf 898699955671699999999679----9789999898799999999999809982686513143215--------6898
Q ss_pred CCEEEECCCHHHCC------CCC-CHHH---------HHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCH-HHHHHHHHH
Q ss_conf 74897532021102------221-0157---------889899988987641148774699993059998-999999986
Q gi|254780313|r 136 PDLVLSDMAYPTIG------HRK-IDHL---------RTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT-NDILCLLKK 198 (227)
Q Consensus 136 ~DlVlSDmapn~SG------~~~-~D~~---------~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~-~~l~~~l~~ 198 (227)
+|+|+|-= |=+.- ..+ .+++ --++.....+..|..+|++||.+++-+ |.+. +.+.+.++.
T Consensus 155 fDlIvsNP-PYI~~~e~~~l~~eV~~~EP~~AL~gg~dGl~~~~~ii~~a~~~L~~~G~l~~Ei--g~~q~~~v~~l~~~ 231 (251)
T TIGR03534 155 FDLIVSNP-PYIPEADIHLLDPEVRFHEPKLALFAGEDGLDFYRRIIAQAPRYLKPGGWLLLEI--GYDQGEAVRALFEA 231 (251)
T ss_pred CCEEEECC-CCCCHHHHHHCCCHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEE--CHHHHHHHHHHHHH
T ss_conf 66899789-9887456663286010267299971798469999999999998536798899996--83789999999996
Q ss_pred H-CCEEEEECCCCCCCC
Q ss_conf 2-584699768665755
Q gi|254780313|r 199 H-FQKVIHVKPVASRAE 214 (227)
Q Consensus 199 ~-F~~V~~~KP~aSR~~ 214 (227)
. |..+.++|--+-+.+
T Consensus 232 ~gf~~i~~~kDl~g~~R 248 (251)
T TIGR03534 232 AGFADVETRKDLAGKDR 248 (251)
T ss_pred CCCCEEEEEECCCCCCC
T ss_conf 89970688507898976
No 43
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.25 E-value=3.8e-05 Score=52.72 Aligned_cols=140 Identities=19% Similarity=0.219 Sum_probs=89.5
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CC--CCCCCEEEECCCCHHHHHHHHHHHCCCC
Q ss_conf 796788850455306899999706878832786411213---------33--4698178301122079999999731388
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------ME--PILGVKFFKFDFLDLDSWEFIRQAIGGN 135 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~--~i~gv~~~~gDi~~~~~~~~i~~~l~~~ 135 (227)
...+|||||++.|--.-.++... .+..|+|+|+.+ +. .+.++.|+++|.++.- .+.+
T Consensus 109 ~~~~ilDlgtGSGcI~isLa~~~----p~~~v~a~DiS~~Al~~A~~Na~~~~l~~v~~~~~d~~~~~--------~~~~ 176 (277)
T PRK09328 109 QPCRILDLGTGTGAIALALASER----PDCEVTAVDRMPDAVALAQRNAQHLAIKNVRILQSDWFSAL--------SGQQ 176 (277)
T ss_pred CCCEEEEECCCHHHHHHHHHHHC----CCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCHHHC--------CCCC
T ss_conf 78818995455699999999867----79899996489999999999999809886999944752113--------7877
Q ss_pred CCEEEECCCHHHC------CCCCCHHH---------HHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCH-HHHHHHHHH-
Q ss_conf 7489753202110------22210157---------889899988987641148774699993059998-999999986-
Q gi|254780313|r 136 PDLVLSDMAYPTI------GHRKIDHL---------RTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT-NDILCLLKK- 198 (227)
Q Consensus 136 ~DlVlSDmapn~S------G~~~~D~~---------~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~-~~l~~~l~~- 198 (227)
+|+|+|-= |=+. -..++.++ --++.....+..|..+|++||.+++-+ |.+. +.+.+.++.
T Consensus 177 fDlIVSNP-PYI~~~~~~~~~~~v~~EP~~AL~gg~dGl~~~~~ii~~a~~~L~~~G~l~~Ei--g~~Q~~~v~~l~~~~ 253 (277)
T PRK09328 177 FAMIVSNP-PYIDAQDPHLQQGDVRFEPLSALVAADNGMADLAHIIEQARQYLVPGGWLLLEH--GWQQGEAVRQLFIRA 253 (277)
T ss_pred CCEEEECC-CCCCCCHHHHCCHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEE--CHHHHHHHHHHHHHC
T ss_conf 78899789-987700034382421668389981797589999999999998446698999996--815899999999967
Q ss_pred HCCEEEEECCCCCCCCCCEEEEEECCC
Q ss_conf 258469976866575582498983075
Q gi|254780313|r 199 HFQKVIHVKPVASRAESVEMFLLAKGF 225 (227)
Q Consensus 199 ~F~~V~~~KP~aSR~~S~E~Ylv~~gf 225 (227)
.|..|.++|--+-+ +.+++|+=|
T Consensus 254 gf~~i~~~kDl~g~----~R~v~ar~~ 276 (277)
T PRK09328 254 GYSDVETCRDYGDN----ERVTLGRWY 276 (277)
T ss_pred CCCEEEEECCCCCC----CEEEEEEEC
T ss_conf 99704786178999----239999967
No 44
>pfam03291 Pox_MCEL mRNA capping enzyme. This family of enzymes are related to pfam03919.
Probab=98.16 E-value=4e-05 Score=52.60 Aligned_cols=136 Identities=17% Similarity=0.201 Sum_probs=84.2
Q ss_pred HHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHH-HHHHHHCCCCCCEEEEEECCCC
Q ss_conf 999996408999999988184479999999998645831379678885045530689-9999706878832786411213
Q gi|254780313|r 27 RDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ-VAARITGSNANNTRVVAIDILD 105 (227)
Q Consensus 27 ~~W~~r~~~D~y~~~Ak~~gyrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQ-va~~~~~~~~~~~~VigVDl~~ 105 (227)
.+|+++.+-..|..+... -.++.+||||||+-||=+. +... .-..++|+|+.+
T Consensus 43 NNwVKs~LI~~~~~~~~~--------------------~~~~~~VLDl~CGkGGDL~Kw~~~------~i~~~vgiDis~ 96 (327)
T pfam03291 43 NNWIKSLLISLYASKTFQ--------------------DKPKRKVLDLDCGKGGDLEKYFKG------GISGLIGTDIAE 96 (327)
T ss_pred HHHHHHHHHHHHHHHHHC--------------------CCCCCEEEEECCCCCCCHHHHHHC------CCCEEEEECCCH
T ss_conf 189999999999887514--------------------688987998368664457889747------986899966899
Q ss_pred ------------CCC---------CCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHH
Q ss_conf ------------334---------69817830112207999999973138874897532021102221015788989998
Q gi|254780313|r 106 ------------MEP---------ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEA 164 (227)
Q Consensus 106 ------------~~~---------i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~ 164 (227)
|.. .-.+.|+.+|-+.....+.+. ....+||+|-|-.|..-+ ..+.+-+..
T Consensus 97 ~sI~~A~~RY~~~~~~~~~~~~~~~f~~~f~~~D~~~~~l~~~~~-~~~~~FDvVS~QFAiHY~-------Fese~~a~~ 168 (327)
T pfam03291 97 VSIEQAQERYNDLNSRSKSKYYKFDFIAEFITGDCFVSSVREVFE-PGQRKFDIVSWQFAIHYS-------FESEEKART 168 (327)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCHHHHHHHCC-CCCCCCCEEEHHHHHHHH-------HCCHHHHHH
T ss_conf 999999999998642114444566750012315621567877535-778850377517878987-------648999999
Q ss_pred HHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHH
Q ss_conf 89876411487746999930599989999999862
Q gi|254780313|r 165 ATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199 (227)
Q Consensus 165 al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~~~ 199 (227)
.|.-+...|++||.|+.-+.+|. .+.+.++..
T Consensus 169 ~l~Nvs~~Lk~GG~FIGT~~d~~---~i~~~l~~~ 200 (327)
T pfam03291 169 MLRNLAELLASGGKFIGTTPDGD---FIIKKLTAT 200 (327)
T ss_pred HHHHHHHHCCCCCEEEEEECCHH---HHHHHHHHH
T ss_conf 99999986058988999966789---999999860
No 45
>KOG1271 consensus
Probab=98.15 E-value=8.3e-06 Score=56.83 Aligned_cols=129 Identities=19% Similarity=0.302 Sum_probs=84.9
Q ss_pred HCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC--------C---CCCCC-CEEEECCCCHHHHHHHH
Q ss_conf 458313796788850455306899999706878832786411213--------3---34698-17830112207999999
Q gi|254780313|r 61 KHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD--------M---EPILG-VKFFKFDFLDLDSWEFI 128 (227)
Q Consensus 61 kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~--------~---~~i~g-v~~~~gDi~~~~~~~~i 128 (227)
-|++-+...+||||||+-|..+--.+ ..|..+..+|||..+ + +..++ +.|.|.||++++
T Consensus 61 ~~rv~~~A~~VlDLGtGNG~~L~~L~----~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~----- 131 (227)
T KOG1271 61 ISRVSKQADRVLDLGTGNGHLLFQLA----KEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPD----- 131 (227)
T ss_pred HHHHCCCCCCEEECCCCCHHHHHHHH----HHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCC-----
T ss_conf 41102243211661579618899988----713888864531578899999878875278853168873225775-----
Q ss_pred HHHCCCCCCEEEECCCHH---HCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHH-CCEEE
Q ss_conf 973138874897532021---10222101578898999889876411487746999930599989999999862-58469
Q gi|254780313|r 129 RQAIGGNPDLVLSDMAYP---TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH-FQKVI 204 (227)
Q Consensus 129 ~~~l~~~~DlVlSDmapn---~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~~~-F~~V~ 204 (227)
++.+++|+|+--+--+ .||..-. .+ | ..-++...+.|+|||.||+--- .....+++..+... |+.+.
T Consensus 132 --~~~~qfdlvlDKGT~DAisLs~d~~~--~r---~-~~Y~d~v~~ll~~~gifvItSC-N~T~dELv~~f~~~~f~~~~ 202 (227)
T KOG1271 132 --FLSGQFDLVLDKGTLDAISLSPDGPV--GR---L-VVYLDSVEKLLSPGGIFVITSC-NFTKDELVEEFENFNFEYLS 202 (227)
T ss_pred --CCCCCEEEEEECCCEEEEECCCCCCC--CC---E-EEEHHHHHHCCCCCCEEEEEEC-CCCHHHHHHHHHCCCEEEEE
T ss_conf --55543238960574122550777766--54---3-4435568630388967999855-76589999997259749999
Q ss_pred EEC
Q ss_conf 976
Q gi|254780313|r 205 HVK 207 (227)
Q Consensus 205 ~~K 207 (227)
.++
T Consensus 203 tvp 205 (227)
T KOG1271 203 TVP 205 (227)
T ss_pred EEC
T ss_conf 605
No 46
>pfam08241 Methyltransf_11 Methyltransferase domain. Members of this family are SAM dependent methyltransferases.
Probab=98.13 E-value=3.8e-06 Score=59.00 Aligned_cols=87 Identities=24% Similarity=0.316 Sum_probs=59.8
Q ss_pred EEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC--------CCCCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf 88504553068999997068788327864112133--------3469817830112207999999973138874897532
Q gi|254780313|r 72 VDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM--------EPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDM 143 (227)
Q Consensus 72 lDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~--------~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDm 143 (227)
||+||++|.++.+.++.. ...++|+|+.+- .+..++.++.+|+.+.. +-.+.||+|+|=.
T Consensus 1 LDiGcG~G~~~~~l~~~~-----~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~d~~~~~-------~~~~~fD~I~~~~ 68 (95)
T pfam08241 1 LDVGCGTGLLTEALARLP-----GAQVTGVDLSPEMLALARKRAQEDGLTFVVGDAEDLP-------FPDESFDVVVSSL 68 (95)
T ss_pred CCCCCCCCHHHHHHHHCC-----CCEEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCC-------CCCCCCCEEEECC
T ss_conf 964624999999998457-----9999999497899877663102669479980332467-------5545685999833
Q ss_pred CHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 02110222101578898999889876411487746999
Q gi|254780313|r 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV 181 (227)
Q Consensus 144 apn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~ 181 (227)
+..-. .| ....+.-+.++|+|||.|++
T Consensus 69 ~l~~~----~~-------~~~~l~~~~r~LkpgG~l~i 95 (95)
T pfam08241 69 VLHHL----PD-------PERALREIARVLKPGGKLVI 95 (95)
T ss_pred CHHHC----CC-------HHHHHHHHHHHCCCCEEEEC
T ss_conf 06646----89-------99999999987786949979
No 47
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.13 E-value=5.5e-05 Score=51.71 Aligned_cols=119 Identities=23% Similarity=0.261 Sum_probs=74.8
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC---------C--CCC-CCEEEECCCCHHHHHHHHHHHCCC
Q ss_conf 7967888504553068999997068788327864112133---------3--469-817830112207999999973138
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM---------E--PIL-GVKFFKFDFLDLDSWEFIRQAIGG 134 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~---------~--~i~-gv~~~~gDi~~~~~~~~i~~~l~~ 134 (227)
+..+||||||+-|--.-.++...+ +..|+|+|+.+- + .+. .+.++++|+++. ..+.
T Consensus 121 ~~~~iLDlGtGSG~Iai~la~~~p----~~~v~a~DiS~~Al~~A~~N~~~~~l~~rv~~~~~D~~~~--------~~~~ 188 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFP----EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA--------LPGR 188 (284)
T ss_pred CCCEEEEECCCCHHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHHH--------CCCC
T ss_conf 777155521680799999998789----9879999899999999999998608543368883514331--------4577
Q ss_pred CCCEEEECCCHHHCCC------CCCHHH---------HHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHH
Q ss_conf 8748975320211022------210157---------8898999889876411487746999930599989999999862
Q gi|254780313|r 135 NPDLVLSDMAYPTIGH------RKIDHL---------RTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199 (227)
Q Consensus 135 ~~DlVlSDmapn~SG~------~~~D~~---------~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~~~ 199 (227)
+||+|+|.= |=++-. .++.|+ --++.....+.-|..+|++||.+++-+ |.+-+. +...
T Consensus 189 ~fDlIVSNP-PYI~~~e~~~l~~ev~~EP~~AL~gG~dGL~~yr~Ii~~a~~~L~pgG~l~lEi--G~~Q~~----~~~~ 261 (284)
T TIGR03533 189 KYDLIVSNP-PYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEV--GNSMEA----LEEA 261 (284)
T ss_pred CCCEEEECC-CCCCHHHHHHCCHHHCCCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEE--CCCHHH----HHHH
T ss_conf 778799779-978846554497641158699875895587999999998898425697899997--978899----9986
Q ss_pred CCEEE
Q ss_conf 58469
Q gi|254780313|r 200 FQKVI 204 (227)
Q Consensus 200 F~~V~ 204 (227)
|..+-
T Consensus 262 ~~~~~ 266 (284)
T TIGR03533 262 YPDVP 266 (284)
T ss_pred CCCCC
T ss_conf 68999
No 48
>pfam01269 Fibrillarin Fibrillarin.
Probab=98.11 E-value=3.6e-05 Score=52.88 Aligned_cols=123 Identities=19% Similarity=0.244 Sum_probs=84.7
Q ss_pred CCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC--------C-CCCCCCEEEECCCCHHHHHHHHHHHCCC
Q ss_conf 313796788850455306899999706878832786411213--------3-3469817830112207999999973138
Q gi|254780313|r 64 ILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD--------M-EPILGVKFFKFDFLDLDSWEFIRQAIGG 134 (227)
Q Consensus 64 l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~--------~-~~i~gv~~~~gDi~~~~~~~~i~~~l~~ 134 (227)
.++||.+||=||||-|--.-.+++.+|+ +|.|+|||+.| + +.-+|+.-+-+|...+.....+ + +
T Consensus 70 ~i~~gskVLYLGAasGTTVSHvsDIvg~---~G~VyAVE~spr~~RdL~~la~~R~NIvPIl~DAr~P~~Y~~l---v-~ 142 (229)
T pfam01269 70 PIKPGSKVLYLGAASGTTVSHVSDIVGP---EGVVYAVEFSPRVGRELINVAKKRPNIVPILEDARHPQKYRML---V-E 142 (229)
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHCCC---CCEEEEEECCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHH---C-C
T ss_conf 8589987999447779857678872288---9539999717355789999974279944576677875676542---5-5
Q ss_pred CCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEE--EEE--CC-CC----HHHHHHHHHH-HCCEEE
Q ss_conf 87489753202110222101578898999889876411487746999--930--59-99----8999999986-258469
Q gi|254780313|r 135 NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV--KTF--QG-GT----TNDILCLLKK-HFQKVI 204 (227)
Q Consensus 135 ~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~--K~F--~G-~~----~~~l~~~l~~-~F~~V~ 204 (227)
.+|+|.+|.|. -||++ ..+.-|..+|++||.+++ |.= +. .+ +.+-++.|+. .|+-..
T Consensus 143 ~VD~ifqDvaQ-------~~Qa~------i~~~Na~~FLk~gG~~~l~iKA~Sid~t~~p~~vf~~e~~~L~~~~~~~~e 209 (229)
T pfam01269 143 MVDVIFADVAQ-------PDQAR------ILALNAKYFLKNGGYFMISIKARSIDVTKEPEEVFAREVEKLKEEGFKPKE 209 (229)
T ss_pred CCCEEEECCCC-------HHHHH------HHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 66689962787-------77899------999999986126988999997134216789899999999999876996589
Q ss_pred EE
Q ss_conf 97
Q gi|254780313|r 205 HV 206 (227)
Q Consensus 205 ~~ 206 (227)
.+
T Consensus 210 ~i 211 (229)
T pfam01269 210 QV 211 (229)
T ss_pred EE
T ss_conf 98
No 49
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.10 E-value=7.4e-05 Score=50.88 Aligned_cols=126 Identities=21% Similarity=0.216 Sum_probs=85.1
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CCC--C-CCCEEEECCCCHHHHHHHHHHHC
Q ss_conf 13796788850455306899999706878832786411213---------334--6-98178301122079999999731
Q gi|254780313|r 65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------MEP--I-LGVKFFKFDFLDLDSWEFIRQAI 132 (227)
Q Consensus 65 ~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~~--i-~gv~~~~gDi~~~~~~~~i~~~l 132 (227)
+++++.|+|+||+-|+-+--++..+++ .++|++||..+ ++. + +++.++.||.-+ .. ..+
T Consensus 38 l~~~~~vwDIGaGsGsvsiEaa~~~~~---~~~V~aIE~~~e~~~~~~~N~~kfg~~~nv~~i~G~ap~--~l----~~l 108 (198)
T PRK00377 38 LFKGGKLVDVGCGTGSVSVEAALIVGE---GGKVYAIDKDELAVELTKKNAEKFGVGDNVVLIEGEAPE--VL----PKL 108 (198)
T ss_pred CCCCCEEEEECCCEEHHHHHHHHHCCC---CCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCHHH--HH----HCC
T ss_conf 999899999177032999999996697---875999967888999999999980999885999525488--77----208
Q ss_pred CCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHCCEEEEECCCCCC
Q ss_conf 38874897532021102221015788989998898764114877469999305999899999998625846997686657
Q gi|254780313|r 133 GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212 (227)
Q Consensus 133 ~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~~~F~~V~~~KP~aSR 212 (227)
...+|.|.=+++ -... ...++.+...|++||.+|+-.-.=+...+.+..++...-.+.++.-..||
T Consensus 109 ~p~pD~vFIGG~-----~g~l---------~~il~~~~~~L~~gGriVinaVtlet~~~~~~~l~~~~~~~ev~qv~vsr 174 (198)
T PRK00377 109 NPKSDRYFIGGG-----GEEL---------PEIIQAALEKIGKGGRIVADAILLESLNKALSALEELGYKYEVTEVIIAK 174 (198)
T ss_pred CCCCCEEEEECC-----CCCH---------HHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHCCCCCEEEEEEEEE
T ss_conf 998898999788-----7778---------99999999857999899998362988999999999769981499999464
Q ss_pred C
Q ss_conf 5
Q gi|254780313|r 213 A 213 (227)
Q Consensus 213 ~ 213 (227)
.
T Consensus 175 ~ 175 (198)
T PRK00377 175 G 175 (198)
T ss_pred C
T ss_conf 7
No 50
>KOG1975 consensus
Probab=98.08 E-value=1.4e-05 Score=55.48 Aligned_cols=149 Identities=17% Similarity=0.222 Sum_probs=94.6
Q ss_pred CCCHHHHHHHHHCCHHHHHHHHHHH---HH--HCCCC----CCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCC
Q ss_conf 0899999998818447999999999---86--45831----379678885045530689999970687883278641121
Q gi|254780313|r 34 INDPYVQRAQLEGWRARSAYKLLQI---NE--KHQIL----QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL 104 (227)
Q Consensus 34 ~~D~y~~~Ak~~gyrsRaafKL~eI---d~--kf~l~----k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~ 104 (227)
..++ |.+-...|+-.|..=+++.| |. |.-|| ++++.|+||||+-||=+- +.... .-+..||+||.
T Consensus 76 Va~H-YN~~~e~g~e~Rq~S~Ii~lRnfNNwIKs~LI~~y~~~~~~~~~LgCGKGGDLl----Kw~kA-gI~~~igiDIA 149 (389)
T KOG1975 76 VAEH-YNERTEVGREKRQRSPIIFLRNFNNWIKSVLINLYTKRGDDVLDLGCGKGGDLL----KWDKA-GIGEYIGIDIA 149 (389)
T ss_pred HHHH-HHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCHH----HHHHH-CCCCEEEEEHH
T ss_conf 9998-778888767653038543366556789999999986122300000567762076----76551-45635765343
Q ss_pred C------------CCC-----CCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 3------------334-----69817830112207999999973138874897532021102221015788989998898
Q gi|254780313|r 105 D------------MEP-----ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATF 167 (227)
Q Consensus 105 ~------------~~~-----i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~ 167 (227)
+ |.. +--+.|+.||=+.....+.+ +.-+-+||+|-|--|...+ .-+.+-+..+|.
T Consensus 150 evSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~-e~~dp~fDivScQF~~HYa-------Fetee~ar~~l~ 221 (389)
T KOG1975 150 EVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLL-EFKDPRFDIVSCQFAFHYA-------FETEESARIALR 221 (389)
T ss_pred HCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHC-CCCCCCCCEEEEEEEEEEE-------ECCHHHHHHHHH
T ss_conf 40099999999999866641365169997144166898742-5789885556554567543-------133888999999
Q ss_pred HHHHCCCCCCEEEEEEECCCCHHHHHHHHHHH
Q ss_conf 76411487746999930599989999999862
Q gi|254780313|r 168 FALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199 (227)
Q Consensus 168 ~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~~~ 199 (227)
=+..+|+|||.|+.-+ ++...+++.|+..
T Consensus 222 Nva~~LkpGG~FIgTi---Pdsd~Ii~rlr~~ 250 (389)
T KOG1975 222 NVAKCLKPGGVFIGTI---PDSDVIIKRLRAG 250 (389)
T ss_pred HHHHHCCCCCEEEEEC---CCHHHHHHHHHHC
T ss_conf 8996358885799846---9689999999851
No 51
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.07 E-value=3.6e-05 Score=52.88 Aligned_cols=107 Identities=21% Similarity=0.169 Sum_probs=66.4
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------C--CCC-CCCEEEECCCCHHHHHHHHHHHCCC
Q ss_conf 796788850455306899999706878832786411213---------3--346-9817830112207999999973138
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------M--EPI-LGVKFFKFDFLDLDSWEFIRQAIGG 134 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~--~~i-~gv~~~~gDi~~~~~~~~i~~~l~~ 134 (227)
.|.+|||+||+.|..+..++++ +..|+||||.+ . .-+ .++.|..||+ +. +.|
T Consensus 63 ~G~rVLDaGCGtG~la~~LA~~------Ga~V~avDiS~~mi~~A~~Ra~~~g~~~~v~F~~gDl-e~---------~~G 126 (230)
T PRK07580 63 TGLSILDAGCGTGSLSIPLARR------GAKVVASDISPQMVEEARERAPEAGLDGNITFEVGDL-ES---------LLG 126 (230)
T ss_pred CCCEEEECCCCCCHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEECCC-CC---------CCC
T ss_conf 8998988187867879999977------9989998389999999997558627876753896676-54---------579
Q ss_pred CCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHC
Q ss_conf 874897532021102221015788989998898764114877469999305999899999998625
Q gi|254780313|r 135 NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200 (227)
Q Consensus 135 ~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~~~F 200 (227)
.||.|+|=- ..-|+-.-++..+.-.+|. +.+|.+|.-+=--...-.++..+-+.|
T Consensus 127 ~FD~Vv~md--------vLiHYp~~d~~~~l~~la~---~~~~~~ifTfAP~T~lL~~m~~iGklF 181 (230)
T PRK07580 127 SFDTVVCLD--------VLIHYPQEDAERMLAHLAS---LTRGSLIFTFAPYTPLLALLHWIGGFF 181 (230)
T ss_pred CCCCHHHCC--------CEEECCHHHHHHHHHHHHH---CCCCEEEEEECCCCHHHHHHHHHHHHC
T ss_conf 866023337--------1554578899999999972---558859999689869999999986438
No 52
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.05 E-value=0.00011 Score=49.81 Aligned_cols=127 Identities=17% Similarity=0.188 Sum_probs=81.2
Q ss_pred CCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC---------C--CCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf 83137967888504553068999997068788327864112133---------3--469817830112207999999973
Q gi|254780313|r 63 QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM---------E--PILGVKFFKFDFLDLDSWEFIRQA 131 (227)
Q Consensus 63 ~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~---------~--~i~gv~~~~gDi~~~~~~~~i~~~ 131 (227)
++ +|+++|.|+||+.|+.+--++.... +++|+|||..+- + -+.|++.+.|+. ++... .
T Consensus 37 ~l-~~~~~vwDIGaGtGsVsiEaa~~~~----~g~V~AIE~~~~a~~li~~N~~rfgv~nv~ii~g~a--pe~L~----~ 105 (196)
T PRK07402 37 RL-EPDSVLWDIGAGTGTIPVEAALLCP----KGRVIAIERDEEVANLIRRNCDRFGVKNVEVIEGSA--PECLA----Q 105 (196)
T ss_pred CC-CCCCEEEEECCCCCHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCC--HHHHH----H
T ss_conf 89-9999999947887799999998789----988999976888999999989972999879997263--66684----0
Q ss_pred CCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHH-HCCEEEEECCCC
Q ss_conf 1388748975320211022210157889899988987641148774699993059998999999986-258469976866
Q gi|254780313|r 132 IGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKK-HFQKVIHVKPVA 210 (227)
Q Consensus 132 l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~~-~F~~V~~~KP~a 210 (227)
+...+|.|.=-+ +| .. ...++.+...|+|||.+|+-.-.=+........++. .|..+.+.--..
T Consensus 106 l~p~pD~vFIGG----g~--~l---------~~il~~~~~~L~pgGriVinaitLetl~~~~~~l~~~~~~~~e~~qv~v 170 (196)
T PRK07402 106 LAPAPDRICIEG----GR--PI---------KEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQARNVEVVQAAV 170 (196)
T ss_pred CCCCCCEEEECC----CC--CH---------HHHHHHHHHHCCCCCEEEEEEEEHHHHHHHHHHHHHCCCCCEEEEEEEH
T ss_conf 899999999848----96--88---------9999999986799989999857098899999999973887637999975
Q ss_pred CCCCC
Q ss_conf 57558
Q gi|254780313|r 211 SRAES 215 (227)
Q Consensus 211 SR~~S 215 (227)
||..+
T Consensus 171 sr~~~ 175 (196)
T PRK07402 171 NRLET 175 (196)
T ss_pred HHCCC
T ss_conf 20323
No 53
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.04 E-value=3.6e-05 Score=52.85 Aligned_cols=120 Identities=19% Similarity=0.200 Sum_probs=72.5
Q ss_pred CCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC-----------CCCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf 83137967888504553068999997068788327864112133-----------3469817830112207999999973
Q gi|254780313|r 63 QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM-----------EPILGVKFFKFDFLDLDSWEFIRQA 131 (227)
Q Consensus 63 ~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~-----------~~i~gv~~~~gDi~~~~~~~~i~~~ 131 (227)
..+.|| ++|||||+.|.=+-+.+.+ +..|.|||+.+. +.++++.+-..|+.+. .
T Consensus 27 ~~~~~g-~~LDlgcG~Grna~~La~~------G~~VtavD~s~~al~~~~~~a~~~~l~~v~~~~~Dl~~~--------~ 91 (198)
T PRK11207 27 KVVKPG-RTLDLGCGNGRNSLYLAAN------GYDVTAWDKNPMSIANLERIKAAENLDNLHTRVVDLNNL--------T 91 (198)
T ss_pred CCCCCC-CEEEECCCCCHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCCCC--------C
T ss_conf 358997-4777247887869999868------985999979999999999999875998246562031238--------8
Q ss_pred CCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCE-EEEEEECCCCH------H-HH-HHHHHHHCCE
Q ss_conf 13887489753202110222101578898999889876411487746-99993059998------9-99-9999862584
Q gi|254780313|r 132 IGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD-FLVKTFQGGTT------N-DI-LCLLKKHFQK 202 (227)
Q Consensus 132 l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~-fV~K~F~G~~~------~-~l-~~~l~~~F~~ 202 (227)
+++.+|+|+|-+.... ++. +....++.-....++|||. +++=.++..+. . .| ...|+.+|.-
T Consensus 92 ~~~~yDlIlstvv~~f-----l~p----~~~p~iia~mq~~t~PGG~~LIV~~~dt~d~p~~~~fpf~f~~gEL~~yy~~ 162 (198)
T PRK11207 92 FDGEYDFILSTVVLMF-----LEA----KTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEG 162 (198)
T ss_pred CCCCCCEEEEEEEEEE-----CCH----HHHHHHHHHHHHHCCCCCEEEEEEECCHHHCCCCCCCCCCCCHHHHHHHHCC
T ss_conf 7777058978645210-----486----6789999999996089948999997454237899897776685799987279
Q ss_pred EEEE
Q ss_conf 6997
Q gi|254780313|r 203 VIHV 206 (227)
Q Consensus 203 V~~~ 206 (227)
=.++
T Consensus 163 W~il 166 (198)
T PRK11207 163 WEMV 166 (198)
T ss_pred CEEE
T ss_conf 9799
No 54
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.02 E-value=1.3e-05 Score=55.56 Aligned_cols=119 Identities=25% Similarity=0.305 Sum_probs=84.8
Q ss_pred HHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC------CCCCCCCEEEE
Q ss_conf 881844799999999986458313796788850455306899999706878832786411213------33469817830
Q gi|254780313|r 43 QLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD------MEPILGVKFFK 116 (227)
Q Consensus 43 k~~gyrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~------~~~i~gv~~~~ 116 (227)
|=++-|+|-|.-|+- .-. +.+-..|+||||+||.=|++.+++.+ ...|.|+|-.+ .+-++++.|.+
T Consensus 10 ~F~~eRtRPa~dLla---~Vp-~~~~~~v~DLGCGpGnsTelL~~RwP----~A~i~GiDsS~~Mla~Aa~rlp~~~f~~ 81 (257)
T COG4106 10 QFEDERTRPARDLLA---RVP-LERPRRVVDLGCGPGNSTELLARRWP----DAVITGIDSSPAMLAKAAQRLPDATFEE 81 (257)
T ss_pred HHHHHCCCCHHHHHH---HCC-CCCCCEEEECCCCCCHHHHHHHHHCC----CCEEEECCCCHHHHHHHHHHCCCCCEEC
T ss_conf 877751573889986---478-66641034557788778899998688----8867604699999999997489973210
Q ss_pred CCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC
Q ss_conf 112207999999973138874897532021102221015788989998898764114877469999305999
Q gi|254780313|r 117 FDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT 188 (227)
Q Consensus 117 gDi~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~ 188 (227)
+|+.+-. .....||+.|..+ =.|--||..... --...|.|||.+-+-+=+.-+
T Consensus 82 aDl~~w~--------p~~~~dllfaNAv----lqWlpdH~~ll~-------rL~~~L~Pgg~LAVQmPdN~d 134 (257)
T COG4106 82 ADLRTWK--------PEQPTDLLFANAV----LQWLPDHPELLP-------RLVSQLAPGGVLAVQMPDNLD 134 (257)
T ss_pred CCHHHCC--------CCCCCCHHHHHHH----HHHCCCCHHHHH-------HHHHHHCCCCEEEEECCCCCC
T ss_conf 5275449--------9876330334436----644364089999-------999850888569997887647
No 55
>pfam01135 PCMT Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT).
Probab=98.01 E-value=2.3e-05 Score=54.08 Aligned_cols=92 Identities=23% Similarity=0.233 Sum_probs=68.6
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC-----------CCCCCCCEEEECCCCHHHHHHHHHHHCC
Q ss_conf 13796788850455306899999706878832786411213-----------3346981783011220799999997313
Q gi|254780313|r 65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-----------MEPILGVKFFKFDFLDLDSWEFIRQAIG 133 (227)
Q Consensus 65 ~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~-----------~~~i~gv~~~~gDi~~~~~~~~i~~~l~ 133 (227)
++|+++|||+||+-|-.+-++++.+++ .|+|++||..+ -..+.||.++.||...--. -.
T Consensus 71 l~~g~~VLeIGtGsGY~tAlLa~l~~~---~g~V~~iE~~~~l~~~A~~~l~~~~~~nV~~~~gdg~~g~~-------~~ 140 (205)
T pfam01135 71 LKPGMRVLEIGSGSGYLTACFARMVGE---VGRVVSIEHIPELVEIARRNLEKLGLENVIVVVGDGRQGWP-------EF 140 (205)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHCC---CCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC-------CC
T ss_conf 899998999669965999999998387---87699983589999999999998488865898456455883-------33
Q ss_pred CCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf 88748975320211022210157889899988987641148774699993
Q gi|254780313|r 134 GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT 183 (227)
Q Consensus 134 ~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~ 183 (227)
++||.|+..+|... +- .--...|++||.+|+=+
T Consensus 141 apfD~Iiv~aa~~~-----iP------------~~l~~qL~~gGrLv~pv 173 (205)
T pfam01135 141 APYDAIHVGAAAPE-----IP------------EALIDQLKEGGRLVIPV 173 (205)
T ss_pred CCCCEEEEEEECCC-----CC------------HHHHHHCCCCCEEEEEE
T ss_conf 98058999750676-----88------------99999628797899998
No 56
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.01 E-value=0.00015 Score=48.99 Aligned_cols=134 Identities=20% Similarity=0.174 Sum_probs=80.5
Q ss_pred CCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC---------C--CC-CCCEEEECCCCHHHHHHHHHHHCCCC
Q ss_conf 967888504553068999997068788327864112133---------3--46-98178301122079999999731388
Q gi|254780313|r 68 NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM---------E--PI-LGVKFFKFDFLDLDSWEFIRQAIGGN 135 (227)
Q Consensus 68 g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~---------~--~i-~gv~~~~gDi~~~~~~~~i~~~l~~~ 135 (227)
..+||||||+.|--.-.++...+ +..|+++|+.+- + .+ ..+.++++|+++.- .+++
T Consensus 134 ~~rilDlGtGSG~Iaisla~~~p----~~~v~a~Dis~~AL~vA~~N~~~~~l~~rv~~~~~D~~~~l--------~~~~ 201 (307)
T PRK11805 134 PTRILDLCTGSGCIAIACAYAFP----DAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAAL--------PGRR 201 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHHCC--------CCCC
T ss_conf 87277742782799999998789----98899985899999999999998388773899804022126--------8875
Q ss_pred CCEEEECCCHHHCC-----C-CCCHHH---------HHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHC
Q ss_conf 74897532021102-----2-210157---------88989998898764114877469999305999899999998625
Q gi|254780313|r 136 PDLVLSDMAYPTIG-----H-RKIDHL---------RTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200 (227)
Q Consensus 136 ~DlVlSDmapn~SG-----~-~~~D~~---------~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~~~F 200 (227)
||+|+|-= |=+.- . .++.|+ --+++....+.-|..+|+|||.+++-+= .+ ...+.+.|
T Consensus 202 fDlIvSNP-PYI~~~~~~~L~~ev~~EP~~AL~gG~DGLd~~r~i~~~A~~~L~pgG~L~~EiG--~~----q~~l~~~~ 274 (307)
T PRK11805 202 YDLIVSNP-PYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAADYLTEDGVLVCEVG--NS----MVHLEAAY 274 (307)
T ss_pred CCEEEECC-CCCCHHHHHHCCHHHCCCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEC--CC----HHHHHHHC
T ss_conf 07799679-9788565633977531587888768924889999999988974476968999979--78----89999867
Q ss_pred CEEEEECCCCCCCCCCEEEEE
Q ss_conf 846997686657558249898
Q gi|254780313|r 201 QKVIHVKPVASRAESVEMFLL 221 (227)
Q Consensus 201 ~~V~~~KP~aSR~~S~E~Ylv 221 (227)
..+-.+=+.-+. .+..+++|
T Consensus 275 p~~p~~wle~~~-g~~gv~~i 294 (307)
T PRK11805 275 PDVPFTWLEFEN-GGDGVFLL 294 (307)
T ss_pred CCCCCEEEEECC-CCCEEEEE
T ss_conf 999954662068-97379997
No 57
>PRK11036 putative metallothionein SmtA; Provisional
Probab=98.01 E-value=4.2e-05 Score=52.46 Aligned_cols=112 Identities=17% Similarity=0.211 Sum_probs=71.4
Q ss_pred CCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CCC---CCCCEEEECCCCHHHHHHHHHHHCCCC
Q ss_conf 96788850455306899999706878832786411213---------334---698178301122079999999731388
Q gi|254780313|r 68 NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------MEP---ILGVKFFKFDFLDLDSWEFIRQAIGGN 135 (227)
Q Consensus 68 g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~~---i~gv~~~~gDi~~~~~~~~i~~~l~~~ 135 (227)
--+|||.||+.|.+++..++. +..|+++|+.+ ++. -..++++++++.+. .+.+.+.
T Consensus 45 plrVLDvG~G~G~~a~~lA~~------Gh~Vt~~D~S~~mL~~A~~~a~~~gv~~~~~~v~~~~q~l------~~~~~~~ 112 (256)
T PRK11036 45 PLRVLDAGGGEGQTAIKMAEL------GHQVTLCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDI------AQHLETP 112 (256)
T ss_pred CCEEEEECCCCCHHHHHHHHC------CCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHH------HHHCCCC
T ss_conf 983998379877989999977------9979986699999999999988649661279885689988------5423688
Q ss_pred CCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHCCEE
Q ss_conf 74897532021102221015788989998898764114877469999305999899999998625846
Q gi|254780313|r 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203 (227)
Q Consensus 136 ~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~~~F~~V 203 (227)
||+|+|-.- ..++++. ..++.....+|+|||.+=+=++ ...-.-+...+.-+|..+
T Consensus 113 fDlVlcHaV-----LE~v~dP------~~~l~~l~~~lkPGG~lSLmfy-N~~alv~~n~l~Gnf~~a 168 (256)
T PRK11036 113 VDLILFHAV-----LEWVADP------KSVLQTLWSVLRPGGALSLMFY-NANGLLMHNMVAGNFDYV 168 (256)
T ss_pred CCEEEEEHH-----HHHCCCH------HHHHHHHHHHHCCCCEEEEEEC-CHHHHHHHHHHHCCHHHH
T ss_conf 667865136-----7723789------9999999997589937999842-851699999982589999
No 58
>PTZ00146 fibrillarin; Provisional
Probab=97.99 E-value=7.6e-05 Score=50.82 Aligned_cols=99 Identities=18% Similarity=0.314 Sum_probs=74.5
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC--------C-CCCCCCEEEECCCCHHHHHHHHHHHCCCC
Q ss_conf 13796788850455306899999706878832786411213--------3-34698178301122079999999731388
Q gi|254780313|r 65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD--------M-EPILGVKFFKFDFLDLDSWEFIRQAIGGN 135 (227)
Q Consensus 65 ~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~--------~-~~i~gv~~~~gDi~~~~~~~~i~~~l~~~ 135 (227)
|+|+..||=||||-|--.-.+++.++++ +.|+||+..| + +.-+|+.-|-.|...+.....+ + ..
T Consensus 133 Ik~GskVLYLGAasGTTVSHVSDIVG~~---G~VYAVEfSpr~~RdLl~lA~~R~NIvPIleDAr~P~kYr~l---V-~~ 205 (296)
T PTZ00146 133 IKPGSKVLYLGAASGTTVSHVSDLVGPE---GVVYAVEFSHRSGRDLVEMAKRRTNIVPIIEDARYPQKYRML---V-PM 205 (296)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHCCCC---CEEEEEEECCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHH---C-CC
T ss_conf 3799989985146798655666501788---619999706466889999972279833577778974675542---4-55
Q ss_pred CCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf 748975320211022210157889899988987641148774699993
Q gi|254780313|r 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT 183 (227)
Q Consensus 136 ~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~ 183 (227)
+|+|.+|.|. -||++++ +.-|..+|++||.|++-+
T Consensus 206 VDvIf~DVAQ-------pdQarI~------~~Na~~FLK~gG~~~i~I 240 (296)
T PTZ00146 206 VDCIFADVAQ-------PDQARIV------ALNAQHFLKNGGHFVISI 240 (296)
T ss_pred CCEEEECCCC-------HHHHHHH------HHHHHHHHHCCCEEEEEE
T ss_conf 5589961787-------6589999------999998531698899999
No 59
>PRK04266 fibrillarin; Provisional
Probab=97.99 E-value=6.3e-05 Score=51.32 Aligned_cols=121 Identities=17% Similarity=0.215 Sum_probs=83.7
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC--------C-CCCCCCEEEECCCCHHHHHHHHHHHCCCC
Q ss_conf 13796788850455306899999706878832786411213--------3-34698178301122079999999731388
Q gi|254780313|r 65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD--------M-EPILGVKFFKFDFLDLDSWEFIRQAIGGN 135 (227)
Q Consensus 65 ~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~--------~-~~i~gv~~~~gDi~~~~~~~~i~~~l~~~ 135 (227)
++||..||=||||-|--.-.+++.++ .|.|+|||+.| + +.-+|+.=+-+|...+.....+ + ..
T Consensus 70 i~~gskVLYLGAasGTTVSHvsDiV~----~G~VyAVE~spr~~RdL~~la~~R~NivPIl~DAr~P~~Y~~~---v-~~ 141 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVE----EGRVYAVEFAPRVMRELLLVAEERKNIIPILGDARKPEEYAHL---V-EK 141 (226)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHCC----CCEEEEEEECCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHH---C-CC
T ss_conf 58998799954777984888987517----9649999827077899999985089962575467884564420---5-65
Q ss_pred CCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEE--EEEC--C-CC----HHHHHHHHH-HHCCEEEE
Q ss_conf 7489753202110222101578898999889876411487746999--9305--9-99----899999998-62584699
Q gi|254780313|r 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV--KTFQ--G-GT----TNDILCLLK-KHFQKVIH 205 (227)
Q Consensus 136 ~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~--K~F~--G-~~----~~~l~~~l~-~~F~~V~~ 205 (227)
+|+|.+|.| .-||+. .++.-|..+|++||.+++ |.=. . .+ +.+-++.|+ ..|+-...
T Consensus 142 VD~i~qDvA-------Q~dQa~------I~~~Na~~FLk~gG~~~l~iKA~Sid~t~~p~~vf~~~~~~L~~~~~~~~e~ 208 (226)
T PRK04266 142 VDVIYQDVA-------QPNQAE------IAADNADIFLKPGGYLMLAIKARSIDVTKDPKEIFKEEIKKLEEGGFEILEV 208 (226)
T ss_pred CCEEEEECC-------CHHHHH------HHHHHHHHHHHCCCEEEEEEEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 658996067-------742899------9999999860159889999974235646898999999999998769966899
Q ss_pred E
Q ss_conf 7
Q gi|254780313|r 206 V 206 (227)
Q Consensus 206 ~ 206 (227)
+
T Consensus 209 i 209 (226)
T PRK04266 209 V 209 (226)
T ss_pred E
T ss_conf 8
No 60
>pfam10672 Methyltrans_SAM S-adenosylmethionine-dependent methyltransferase. Members of this family are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases.
Probab=97.97 E-value=0.00018 Score=48.43 Aligned_cols=125 Identities=18% Similarity=0.243 Sum_probs=75.6
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC-----------CC--CCCCCEEEECCCCHHHHHHHHHHHC
Q ss_conf 3796788850455306899999706878832786411213-----------33--4698178301122079999999731
Q gi|254780313|r 66 QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-----------ME--PILGVKFFKFDFLDLDSWEFIRQAI 132 (227)
Q Consensus 66 k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~-----------~~--~i~gv~~~~gDi~~~~~~~~i~~~l 132 (227)
-+|.+||||-|..|||+-+|+. -| .-.|++||+.. .. ....+.|+.+|+++. ...+..
T Consensus 122 ~~g~rvLn~Fsytg~fsv~A~~-~G----A~~v~~vD~S~~al~~a~~N~~lN~~~~~~~~~~~~D~f~~--l~~~~~-- 192 (286)
T pfam10672 122 AKGKNVLNLFAYTCGFSVAAIA-GG----ASQVVNVDMARGSLSKGRDNHRLNGHDLGRVSFLGHDIFKS--WGKIKK-- 192 (286)
T ss_pred CCCCCEEEECCCCCHHHHHHHH-CC----CCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHH--HHHHHC--
T ss_conf 2898325311478699999876-79----87799991988999999999997699954369998309999--999861--
Q ss_pred CCCCCEEEECCCHHHC-CCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCC-CHHHHHHHHHHHCCEEEE
Q ss_conf 3887489753202110-222101578898999889876411487746999930599-989999999862584699
Q gi|254780313|r 133 GGNPDLVLSDMAYPTI-GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGG-TTNDILCLLKKHFQKVIH 205 (227)
Q Consensus 133 ~~~~DlVlSDmapn~S-G~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~-~~~~l~~~l~~~F~~V~~ 205 (227)
.++||+|+.| -|... +.+.. .+- -......|..+|+|||.+++=.-... ..+.|...+...=..+.+
T Consensus 193 ~~~fD~VilD-PPsf~k~~~~~--~~~---Y~~l~~~a~~ll~~gG~L~~~s~s~~l~~~~~~~~~~~~~~~~~~ 261 (286)
T pfam10672 193 LGPYDLVIID-PPSFQKGSFAL--TKD---YKKILRRLPELLVEGGTVLACVNSPAVGPDFLIEEMAEEAPSLHF 261 (286)
T ss_pred CCCCCEEEEC-CCCCCCCHHHH--HHH---HHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEE
T ss_conf 7999879987-99988872478--878---999999999860899689998188658999999999985876299
No 61
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=97.94 E-value=4.6e-05 Score=52.18 Aligned_cols=140 Identities=22% Similarity=0.371 Sum_probs=86.3
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC-----------CCC-CCCEEEECCCCHHHHHHHHHHHC
Q ss_conf 137967888504553068999997068788327864112133-----------346-98178301122079999999731
Q gi|254780313|r 65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM-----------EPI-LGVKFFKFDFLDLDSWEFIRQAI 132 (227)
Q Consensus 65 ~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~-----------~~i-~gv~~~~gDi~~~~~~~~i~~~l 132 (227)
.....+||||||+-|.-.-.++++... ..|+||++++. .++ +.+.++++||.+... ...
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~~~----a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~-----~~~ 112 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRTEK----AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLK-----ALV 112 (248)
T ss_pred CCCCCEEEEECCCCCHHHHHHHCCCCC----CCEEEEEECHHHHHHHHHHHHHCCCHHHEEEEHHHHHHHHH-----CCC
T ss_conf 566876988368946899997455877----80799981799999999988618613401676430887654-----236
Q ss_pred CCCCCEEEECCCHHHCCCC-CCHH----HHH-HHH-HHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHH-HC--CE
Q ss_conf 3887489753202110222-1015----788-989-9988987641148774699993059998999999986-25--84
Q gi|254780313|r 133 GGNPDLVLSDMAYPTIGHR-KIDH----LRT-MSL-CEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKK-HF--QK 202 (227)
Q Consensus 133 ~~~~DlVlSDmapn~SG~~-~~D~----~~~-~~L-~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~~-~F--~~ 202 (227)
...||+|+|-=-.+..|.. ..|. ++. +++ .+..+..|..+|++||.+.+=. .-+...+++..+++ .| .+
T Consensus 113 ~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~-r~erl~ei~~~l~~~~~~~k~ 191 (248)
T COG4123 113 FASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVH-RPERLAEIIELLKSYNLEPKR 191 (248)
T ss_pred CCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEE-CHHHHHHHHHHHHHCCCCCEE
T ss_conf 5654789959898787533486746655663222889999999999746797899995-588889999999866987158
Q ss_pred EEEECCCCCCCC
Q ss_conf 699768665755
Q gi|254780313|r 203 VIHVKPVASRAE 214 (227)
Q Consensus 203 V~~~KP~aSR~~ 214 (227)
+..+-|...++.
T Consensus 192 i~~V~p~~~k~A 203 (248)
T COG4123 192 IQFVYPKIGKAA 203 (248)
T ss_pred EEEECCCCCCCC
T ss_conf 998627888751
No 62
>pfam08704 GCD14 tRNA methyltransferase complex GCD14 subunit. GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA.
Probab=97.90 E-value=0.00015 Score=48.95 Aligned_cols=129 Identities=15% Similarity=0.190 Sum_probs=87.6
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------C---CCCCCCEE
Q ss_conf 44799999999986458313796788850455306899999706878832786411213---------3---34698178
Q gi|254780313|r 47 WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------M---EPILGVKF 114 (227)
Q Consensus 47 yrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~---~~i~gv~~ 114 (227)
|..=++|=+..+ +| +||.+||+-|.+-|+.|-+.++.+++. |+|+.+|..+ + ....++.+
T Consensus 87 YpkD~s~I~~~l----di-~PG~~VlEaGtGSGsLT~~Laravgp~---G~v~t~E~~e~r~~~A~~n~~~~g~~~~v~~ 158 (309)
T pfam08704 87 YTPDISLIIMML----EL-KPGSVVCESGTGSGSLSHAIARTVAPT---GHLYTFEFHEQRADKAREEFREHGLDSLVTV 158 (309)
T ss_pred CCCCHHHHHHHH----CC-CCCCEEEEECCCCCHHHHHHHHHHCCC---CEEEEEECCHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 560099999980----98-999999983678429999999974888---6599984478999999999987498750588
Q ss_pred EECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC-CCCEEEEEEECCCCHHH--
Q ss_conf 301122079999999731388748975320211022210157889899988987641148-77469999305999899--
Q gi|254780313|r 115 FKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLN-IGGDFLVKTFQGGTTND-- 191 (227)
Q Consensus 115 ~~gDi~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk-~gG~fV~K~F~G~~~~~-- 191 (227)
...|+...... +.+.+.+|.|+-|| |+- -.|+..+...|+ +||.+++ | .+..++
T Consensus 159 ~~rDv~~~gf~----~~~~~~~D~VfLDl-p~P---------------W~ai~~~~~~Lk~~Gg~l~~--f-~P~ieQv~ 215 (309)
T pfam08704 159 THRDVCKSGFD----TEVSNKADAVFLDL-PAP---------------WEAIPHAAKALKVEGGRLCS--F-SPCIEQVQ 215 (309)
T ss_pred EECCHHCCCCC----CCCCCCCCEEEECC-CCH---------------HHHHHHHHHHHCCCCCEEEE--E-CCCHHHHH
T ss_conf 98520013666----44566435899758-997---------------99889999860689968999--9-19899999
Q ss_pred -HHHHHHH-HCCEEEEE
Q ss_conf -9999986-25846997
Q gi|254780313|r 192 -ILCLLKK-HFQKVIHV 206 (227)
Q Consensus 192 -l~~~l~~-~F~~V~~~ 206 (227)
....|+. -|..+..+
T Consensus 216 r~~~aL~~~gF~~i~t~ 232 (309)
T pfam08704 216 RTCLALAALGFTEIETI 232 (309)
T ss_pred HHHHHHHHCCCCCEEEE
T ss_conf 99999997799740799
No 63
>KOG1596 consensus
Probab=97.88 E-value=2.5e-05 Score=53.85 Aligned_cols=100 Identities=22% Similarity=0.361 Sum_probs=74.2
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEE--------CCCCCC-CCCCCEEEECCCCHHHHHHHHHHHCCCC
Q ss_conf 1379678885045530689999970687883278641--------121333-4698178301122079999999731388
Q gi|254780313|r 65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAI--------DILDME-PILGVKFFKFDFLDLDSWEFIRQAIGGN 135 (227)
Q Consensus 65 ~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigV--------Dl~~~~-~i~gv~~~~gDi~~~~~~~~i~~~l~~~ 135 (227)
++||..||=||||-|--.-.+++.+++.| .|+|| ||..|. .-+|+.-|..|...+.-. ..+-+-
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG---~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KY----RmlVgm 226 (317)
T KOG1596 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEG---CVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKY----RMLVGM 226 (317)
T ss_pred ECCCCEEEEEECCCCCEEEHHHCCCCCCC---EEEEEEECCCCHHHHHHHHHCCCCCEEEEECCCCCHHE----EEEEEE
T ss_conf 35886699963367843330000307774---39999843553288998764268700245047785003----566105
Q ss_pred CCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf 7489753202110222101578898999889876411487746999930
Q gi|254780313|r 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF 184 (227)
Q Consensus 136 ~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F 184 (227)
+|+|.||.|+ -|++++..|+ |..+|++||.||+-+-
T Consensus 227 VDvIFaDvaq-------pdq~RivaLN------A~~FLk~gGhfvisik 262 (317)
T KOG1596 227 VDVIFADVAQ-------PDQARIVALN------AQYFLKNGGHFVISIK 262 (317)
T ss_pred EEEEECCCCC-------CHHHHHHHHH------HHHHHCCCCEEEEEEE
T ss_conf 7789626897-------0344545334------6665026871899985
No 64
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=97.87 E-value=0.0001 Score=50.00 Aligned_cols=138 Identities=19% Similarity=0.245 Sum_probs=91.0
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CC--CCCC-CEE
Q ss_conf 44799999999986458313796788850455306899999706878832786411213---------33--4698-178
Q gi|254780313|r 47 WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------ME--PILG-VKF 114 (227)
Q Consensus 47 yrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~--~i~g-v~~ 114 (227)
|.-=|+| |-.+-+| .||.+|+|-|.+-|.-|-|.+..+++.| +|+++|+.+ ++ -+.+ |.+
T Consensus 79 yPKD~~~----I~~~~gi-~pg~rVlEAGtGSG~lt~~La~~vg~~G---~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~ 150 (256)
T COG2519 79 YPKDAGY----IVARLGI-SPGSRVLEAGTGSGALTAYLARAVGPEG---HVTTYEIREDFAKTARENLSEFGLGDRVTL 150 (256)
T ss_pred CCCCHHH----HHHHCCC-CCCCEEEECCCCCHHHHHHHHHHHCCCC---EEEEEEECHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 5777999----9987099-9887899815680599999999648884---599999527899999999998424561378
Q ss_pred EECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHH
Q ss_conf 30112207999999973138874897532021102221015788989998898764114877469999305999899999
Q gi|254780313|r 115 FKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILC 194 (227)
Q Consensus 115 ~~gDi~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~ 194 (227)
..+|+.+... ...+|+|+-|| |+- -.+++-+.+.|+|||.+++=+=.-+-.+....
T Consensus 151 ~~~Dv~~~~~--------~~~vDav~LDm-p~P---------------W~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~ 206 (256)
T COG2519 151 KLGDVREGID--------EEDVDAVFLDL-PDP---------------WNVLEHVSDALKPGGVVVVYSPTVEQVEKTVE 206 (256)
T ss_pred EECCCCCCCC--------CCCCCEEEECC-CCH---------------HHHHHHHHHHHCCCCEEEEECCCHHHHHHHHH
T ss_conf 7054000246--------55467799758-984---------------89999999871799679998397899999999
Q ss_pred HHHHH-CCEEE---------EECCCCCCCCCC
Q ss_conf 99862-58469---------976866575582
Q gi|254780313|r 195 LLKKH-FQKVI---------HVKPVASRAESV 216 (227)
Q Consensus 195 ~l~~~-F~~V~---------~~KP~aSR~~S~ 216 (227)
.|+.. |.... -+++.+.|+++.
T Consensus 207 ~l~~~g~~~ie~~E~l~R~~~v~~~~~RP~~~ 238 (256)
T COG2519 207 ALRERGFVDIEAVETLVRRWEVRKEATRPETR 238 (256)
T ss_pred HHHHCCCCCHHHHEEEEHEEEECCCCCCCCCC
T ss_conf 99866951502320310002320265575510
No 65
>PRK09329 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.86 E-value=0.00054 Score=45.49 Aligned_cols=137 Identities=15% Similarity=0.140 Sum_probs=81.7
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC---------CC-CCCCEEEECCCCHHHHHHHHHHHCCCCC
Q ss_conf 7967888504553068999997068788327864112133---------34-6981783011220799999997313887
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM---------EP-ILGVKFFKFDFLDLDSWEFIRQAIGGNP 136 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~---------~~-i~gv~~~~gDi~~~~~~~~i~~~l~~~~ 136 (227)
+...+||||++.|--.-.++...+ +..|+|+|+.+- +. --.+.|+++|++++ +.+++
T Consensus 109 ~~~~~lDlGtGSG~I~isla~~~p----~~~v~avDiS~~Al~~A~~Na~~~~~~v~~~~~dl~~~---------~~~~~ 175 (285)
T PRK09329 109 EIQTFYDVCCGSGCIGLAIKKHCP----HVHVVLSDICPQALAVAKSNAKSNGLDVDFLLGDLFAP---------FSRPA 175 (285)
T ss_pred CCCEEEEECCCHHHHHHHHHHHCC----CCEEEHHHCCHHHHHHHHHHHHHCCCCEEEEECCHHHH---------HCCCC
T ss_conf 777788845417999999998589----86588033769999999999997299479997630033---------34767
Q ss_pred CEEEECCCHHHC-C-CCCCH-----HH---------HHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCH-HHHHHHHHHH
Q ss_conf 489753202110-2-22101-----57---------889899988987641148774699993059998-9999999862
Q gi|254780313|r 137 DLVLSDMAYPTI-G-HRKID-----HL---------RTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT-NDILCLLKKH 199 (227)
Q Consensus 137 DlVlSDmapn~S-G-~~~~D-----~~---------~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~-~~l~~~l~~~ 199 (227)
|+|+|-= |=+. . ....| ++ --++.....+..|..+|++||.+++-+ |.+. ..+.+.++..
T Consensus 176 DlIvSNP-PYI~~~e~~~l~~eV~~~EP~~AL~gg~dGl~~~r~i~~~a~~~L~~~G~l~~Ei--g~~Q~~~v~~l~~~~ 252 (285)
T PRK09329 176 DAFVCNP-PYLSFKEFFHVDPEVRCHEPWKALVGGSSGLEFYQRIAQELPKILVPGGVGWLEI--GSSQGESVKKIFAKH 252 (285)
T ss_pred CEEEECC-CCCCHHHHHHCCHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEE--CCHHHHHHHHHHHHC
T ss_conf 8899899-9888444544987554367099884797389999999999999600498899996--854899999999966
Q ss_pred CCEEEEECCCCCCCCCCEEEEEEC
Q ss_conf 584699768665755824989830
Q gi|254780313|r 200 FQKVIHVKPVASRAESVEMFLLAK 223 (227)
Q Consensus 200 F~~V~~~KP~aSR~~S~E~Ylv~~ 223 (227)
.-...++|--+.++ .|++++
T Consensus 253 g~~~~v~kDl~G~~----R~l~~~ 272 (285)
T PRK09329 253 GISGRVLQDLAGLD----RFFFLE 272 (285)
T ss_pred CCCCEEEECCCCCC----CEEEEE
T ss_conf 99642811799995----389998
No 66
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=97.85 E-value=0.0003 Score=47.07 Aligned_cols=117 Identities=19% Similarity=0.220 Sum_probs=75.7
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCC-----------CCCCCEEEECCCCHHHHHHHHHHHCCCC
Q ss_conf 79678885045530689999970687883278641121333-----------4698178301122079999999731388
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME-----------PILGVKFFKFDFLDLDSWEFIRQAIGGN 135 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~-----------~i~gv~~~~gDi~~~~~~~~i~~~l~~~ 135 (227)
...+||||||+-|--+-++.+..+ ..+|..+|...+. .+. ..++..|.++. +.++
T Consensus 196 ~~g~VLDlGCG~Gvi~~~la~~~p----~~~v~l~Dv~a~Al~~ar~nl~~N~l~-~~v~~sd~~~~---------v~~~ 261 (342)
T PRK09489 196 TKGKVLDVGCGAGVLSAVLAQHSP----KIRLTLCDVSAPAVEASRATLAANGLE-GEVFASNVFSE---------IKGR 261 (342)
T ss_pred CCCCEEEECCCHHHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHHCCC-CEEEECCCCCC---------CCCC
T ss_conf 488478606781799999998699----976999968899999999989980988-68997564456---------5567
Q ss_pred CCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHCCEEEEE
Q ss_conf 74897532021102221015788989998898764114877469999305999899999998625846997
Q gi|254780313|r 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHV 206 (227)
Q Consensus 136 ~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~~~F~~V~~~ 206 (227)
+|+|+|-= |--+|... |. ++.+.-+.-|...|++||.+.+=. ..+-.+...++..|..|.+.
T Consensus 262 fD~IvsNP-PFH~G~~~-~~----~i~~~fi~~A~~~L~~gG~L~iVA---Nr~LpY~~~L~~~Fg~~~~l 323 (342)
T PRK09489 262 FDMIISNP-PFHDGIQT-SL----DAAQTLIRGAVRHLNSGGELRIVA---NAFLPYPDLLDETFGSHEVL 323 (342)
T ss_pred CCEEEECC-CCCCCCCC-CH----HHHHHHHHHHHHHHHCCCEEEEEE---CCCCCCHHHHHHHCCCEEEE
T ss_conf 89899688-52157526-58----999999999998612498899998---18989689999862982998
No 67
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase; InterPro: IPR010233 This entry represents an O-methyltransferase, which is believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and mitochondria (COQ3) , . A separate methylase (MenG/UbiE) catalyses the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.; GO: 0008425 2-polyprenyl-6-methoxy-14-benzoquinone methyltransferase activity, 0006744 ubiquinone biosynthetic process.
Probab=97.83 E-value=3.1e-05 Score=53.23 Aligned_cols=113 Identities=24% Similarity=0.273 Sum_probs=61.3
Q ss_pred HHHHHHH--HCCCC-CCCCEEEEEECCCCHHHHHHHHHHCCCCCCEE-EEEECCCCCCCCCCCEEE------ECC----C
Q ss_conf 9999986--45831-37967888504553068999997068788327-864112133346981783------011----2
Q gi|254780313|r 54 KLLQINE--KHQIL-QSNRRIVDLGSSPGSWSQVAARITGSNANNTR-VVAIDILDMEPILGVKFF------KFD----F 119 (227)
Q Consensus 54 KL~eId~--kf~l~-k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~-VigVDl~~~~~i~gv~~~------~gD----i 119 (227)
.|.|.|| +-+|. ++|.+|||+||+=|==|+=.++ . +.. |+|||..+ +.|.-++.+ +-| |
T Consensus 68 ~l~E~QE~~~~~~~~~~G~~vLDVGCGGGlLsE~lAR----~--Ga~~V~GID~~~-~~i~~Ak~Ha~~~~~~~~~~K~i 140 (275)
T TIGR01983 68 PLKEDQESIRDELLKDSGLRVLDVGCGGGLLSEPLAR----L--GANKVTGIDASE-ENIEVAKLHAKKDPLQEALDKKI 140 (275)
T ss_pred CCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHH----C--CCCEEEEEECHH-HHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 7010255677634117897799842785788899975----5--884257752117-79999998887334023311114
Q ss_pred -CHHHHHHHHHHHC--CCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf -2079999999731--3887489753202110222101578898999889876411487746999930
Q gi|254780313|r 120 -LDLDSWEFIRQAI--GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF 184 (227)
Q Consensus 120 -~~~~~~~~i~~~l--~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F 184 (227)
+.-.+.+++.+.- .+.||+|+|= .-+.|=.-. ...+.-|..+|||||.+++=+.
T Consensus 141 ~Y~~~~~E~l~~~~h~~~~FD~V~~m--------EvlEHV~dp---~~f~~~c~~llkPgG~lF~STI 197 (275)
T TIGR01983 141 EYRCTSVEELAEEQHTKKSFDVVTCM--------EVLEHVPDP---QAFIKACAQLLKPGGILFFSTI 197 (275)
T ss_pred HHHHHHHHHHHCCCCCCCCCCEEEEE--------EEEECCCCH---HHHHHHHHHHCCCCCCEEEECC
T ss_conf 54443078873055784157337643--------200002788---8999999985089984897300
No 68
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=97.80 E-value=0.00075 Score=44.60 Aligned_cols=114 Identities=18% Similarity=0.313 Sum_probs=69.9
Q ss_pred CCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCC---CC-----CC----EEEECCCCHHHHHHHHHHH
Q ss_conf 313796788850455306899999706878832786411213334---69-----81----7830112207999999973
Q gi|254780313|r 64 ILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP---IL-----GV----KFFKFDFLDLDSWEFIRQA 131 (227)
Q Consensus 64 l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~---i~-----gv----~~~~gDi~~~~~~~~i~~~ 131 (227)
+.++|.+|||+||+-|=-+- |+.+.|. ..|+|+|+-|..- .+ ++ .+..++ ...
T Consensus 159 ~~~~~~~vLDvG~GSGILaI-aA~klGa----~~v~a~DiD~~Av~~a~eN~~lN~v~~~~~~~~~~----------~~~ 223 (298)
T PRK00517 159 LVLPGKTVLDVGCGSGILAI-AAAKLGA----KPVLAIDIDPQAVEAARENAELNGVDDRLELYLPE----------DQP 223 (298)
T ss_pred HCCCCCEEEEECCCCHHHHH-HHHHCCC----CEEEEEECCHHHHHHHHHHHHHCCCCCCEEEECCC----------CCC
T ss_conf 35468868871577069999-9997499----84999989899999999999986998426896166----------434
Q ss_pred CCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHH-CCEEEEE
Q ss_conf 13887489753202110222101578898999889876411487746999930599989999999862-5846997
Q gi|254780313|r 132 IGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH-FQKVIHV 206 (227)
Q Consensus 132 l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~~~-F~~V~~~ 206 (227)
..+++|+|++-+-.++ .+.| ..-..+.|+|||.+++-=+--+....+...+..+ |+-+...
T Consensus 224 ~~~~~DlvvANIla~v----------l~~l----~~~~~~~l~~~G~lilSGIl~~~~~~v~~~~~~~g~~~~~~~ 285 (298)
T PRK00517 224 LEGKADVIVANILANP----------LIEL----APDLAALVKPGGRLILSGILAEQADEVLEAYEDAGFTLDEVA 285 (298)
T ss_pred CCCCCCEEEEECCHHH----------HHHH----HHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 4676468997315899----------9999----999999738997999927848899999999998799897886
No 69
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=97.80 E-value=0.00053 Score=45.54 Aligned_cols=118 Identities=19% Similarity=0.283 Sum_probs=76.5
Q ss_pred CCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC-----------CCCCCCEEEECCCCHHHHHHHHHHHCCCCC
Q ss_conf 967888504553068999997068788327864112133-----------346981783011220799999997313887
Q gi|254780313|r 68 NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM-----------EPILGVKFFKFDFLDLDSWEFIRQAIGGNP 136 (227)
Q Consensus 68 g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~-----------~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~ 136 (227)
+.+|+||||+=|--.-++++..+ ...|.=||+..+ ..+++..++..|+.+. ..+++
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p----~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~---------v~~kf 225 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSP----QAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEP---------VEGKF 225 (300)
T ss_pred CCCEEEECCCCCHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCCC---------CCCCC
T ss_conf 99688707884299999998689----872899826699999988769973987637998124466---------54400
Q ss_pred CEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHCCEEEEEC
Q ss_conf 48975320211022210157889899988987641148774699993059998999999986258469976
Q gi|254780313|r 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207 (227)
Q Consensus 137 DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~~~F~~V~~~K 207 (227)
|+|+|- |.+---+.+++ .+....+.-|.+.|++||.+-+=.- .+......|+..|.+|.++.
T Consensus 226 d~IisN--PPfh~G~~v~~----~~~~~ii~~A~~~L~~gGeL~iVan---~~l~y~~~L~~~Fg~v~~la 287 (300)
T COG2813 226 DLIISN--PPFHAGKAVVH----SLAQEIIAAAARHLKPGGELWIVAN---RHLPYEKKLKELFGNVEVLA 287 (300)
T ss_pred CEEEEC--CCCCCCCCHHH----HHHHHHHHHHHHHHCCCCEEEEEEC---CCCCHHHHHHHHCCCEEEEE
T ss_conf 689848--88467710167----8899999999976045977999975---88896899998628779998
No 70
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=97.76 E-value=0.00016 Score=48.83 Aligned_cols=125 Identities=14% Similarity=0.224 Sum_probs=70.1
Q ss_pred CCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCC---CCCCEEEECC--CCHHHHHHHHHHHCCCCCCE
Q ss_conf 313796788850455306899999706878832786411213334---6981783011--22079999999731388748
Q gi|254780313|r 64 ILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP---ILGVKFFKFD--FLDLDSWEFIRQAIGGNPDL 138 (227)
Q Consensus 64 l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~---i~gv~~~~gD--i~~~~~~~~i~~~l~~~~Dl 138 (227)
+.+++.+|||+||+-|=-+- |+.+.|. .+|+|+|+-|..- -+|+..-..+ ++... ........++++|+
T Consensus 159 ~~~~g~~vlDvGcGSGILaI-Aa~kLGA----~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~-~~~~~~~~~~~~Dv 232 (300)
T COG2264 159 LLKKGKTVLDVGCGSGILAI-AAAKLGA----KKVVGVDIDPQAVEAARENARLNGVELLVQAKG-FLLLEVPENGPFDV 232 (300)
T ss_pred HHCCCCEEEEECCCHHHHHH-HHHHCCC----CEEEEECCCHHHHHHHHHHHHHCCCCHHHHCCC-CCCHHHCCCCCCCE
T ss_conf 60589879982678159999-9998198----668997188899999999999769960220034-56300013686568
Q ss_pred EEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHH-HHHCCEEEEECC
Q ss_conf 9753202110222101578898999889876411487746999930599989999999-862584699768
Q gi|254780313|r 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL-KKHFQKVIHVKP 208 (227)
Q Consensus 139 VlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l-~~~F~~V~~~KP 208 (227)
|++-+-.++ ......-....|+|||.++.-=.-....+.+...+ +.-|.-+....+
T Consensus 233 IVANILA~v--------------l~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~~~~ 289 (300)
T COG2264 233 IVANILAEV--------------LVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEVLER 289 (300)
T ss_pred EEEHHHHHH--------------HHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 986052789--------------999999999870889369998620758999999998589768689700
No 71
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=97.75 E-value=0.00049 Score=45.73 Aligned_cols=147 Identities=20% Similarity=0.207 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC-CC----------CCCCCEEEE
Q ss_conf 4799999999986458313796788850455306899999706878832786411213-33----------469817830
Q gi|254780313|r 48 RARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-ME----------PILGVKFFK 116 (227)
Q Consensus 48 rsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~-~~----------~i~gv~~~~ 116 (227)
-||+.--|.++ ++|..|+|==|+.||++ +.+.++| ..++|.|+.. |- .+++..++.
T Consensus 185 lAR~mVNLa~v-------~~G~~vlDPFcGTGgiL-iEagl~G-----~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~ 251 (347)
T COG1041 185 LARAMVNLARV-------KRGELVLDPFCGTGGIL-IEAGLMG-----ARVIGSDIDERMVRGAKINLEYYGIEDYPVLK 251 (347)
T ss_pred HHHHHHHHHCC-------CCCCEEECCCCCCCHHH-HHHHHCC-----CEEEECCHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 99998777416-------46987645767834888-8366427-----56760323799985566415662767616887
Q ss_pred C-CCCHHHHHHHHHHHCCC-CCCEEEECCCHHHCCCCC-CHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHH
Q ss_conf 1-12207999999973138-874897532021102221-01578898999889876411487746999930599989999
Q gi|254780313|r 117 F-DFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRK-IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDIL 193 (227)
Q Consensus 117 g-Di~~~~~~~~i~~~l~~-~~DlVlSDmapn~SG~~~-~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~ 193 (227)
+ |.++.. +.+ .+|.|.+|. | -|..+ +--...-+|.+.+++.+.++|++||-+|.=.. .....
T Consensus 252 ~~Da~~lp--------l~~~~vdaIatDP-P--YGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p----~~~~~ 316 (347)
T COG1041 252 VLDATNLP--------LRDNSVDAIATDP-P--YGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP----RDPRH 316 (347)
T ss_pred ECCCCCCC--------CCCCCCCEEEECC-C--CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECC----CCCHH
T ss_conf 30221277--------8877423588469-9--87100245552899999999999987304848999617----86055
Q ss_pred HHHHHHCCEEEEECCCCCCCCCCEEEEEE
Q ss_conf 99986258469976866575582498983
Q gi|254780313|r 194 CLLKKHFQKVIHVKPVASRAESVEMFLLA 222 (227)
Q Consensus 194 ~~l~~~F~~V~~~KP~aSR~~S~E~Ylv~ 222 (227)
......|+-+..+.--.-++=++.+|++-
T Consensus 317 ~~~~~~f~v~~~~~~~~H~sLtR~i~v~~ 345 (347)
T COG1041 317 ELEELGFKVLGRFTMRVHGSLTRVIYVVR 345 (347)
T ss_pred HHHHCCCEEEEEEEEEECCCEEEEEEEEE
T ss_conf 67643965999997764174689999986
No 72
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=97.75 E-value=0.0001 Score=50.01 Aligned_cols=102 Identities=24% Similarity=0.375 Sum_probs=59.3
Q ss_pred HHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCC---------CCEEEECCCCHHHHHHHH
Q ss_conf 98645831379678885045530689999970687883278641121333469---------817830112207999999
Q gi|254780313|r 58 INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPIL---------GVKFFKFDFLDLDSWEFI 128 (227)
Q Consensus 58 Id~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~i~---------gv~~~~gDi~~~~~~~~i 128 (227)
+..+|+ -+|.+|||.||+=|..|+-+++. +-.|.|+|+.+ ++|+ |+. .|.... +.+.+
T Consensus 52 ~~~~~~--l~g~~vLDvGCGgG~Lse~mAr~------Ga~VtgiD~se-~~I~~Ak~ha~e~gv~---i~y~~~-~~edl 118 (243)
T COG2227 52 ARLRFD--LPGLRVLDVGCGGGILSEPLARL------GASVTGIDASE-KPIEVAKLHALESGVN---IDYRQA-TVEDL 118 (243)
T ss_pred HHHCCC--CCCCEEEEECCCCCHHHHHHHHC------CCEEEEECCCH-HHHHHHHHHHHHCCCC---CCCHHH-HHHHH
T ss_conf 420147--77770887458832864999977------99469743876-7789998754424632---252233-29999
Q ss_pred HHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf 97313887489753202110222101578898999889876411487746999930
Q gi|254780313|r 129 RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF 184 (227)
Q Consensus 129 ~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F 184 (227)
.. .+++||+|+|= .-+.|.-.-+ ..+.-|...++|||.++.-.-
T Consensus 119 ~~-~~~~FDvV~cm--------EVlEHv~dp~---~~~~~c~~lvkP~G~lf~STi 162 (243)
T COG2227 119 AS-AGGQFDVVTCM--------EVLEHVPDPE---SFLRACAKLVKPGGILFLSTI 162 (243)
T ss_pred HH-CCCCCCEEEEH--------HHHHCCCCHH---HHHHHHHHHCCCCCEEEEECC
T ss_conf 72-48974489773--------5877169999---999999986299928999420
No 73
>pfam02475 Met_10 Met-10+ like-protein. The methionine-10 mutant allele of N. crassa codes for a protein of unknown function. However, homologous proteins have been found in yeast suggesting this protein may be involved in methionine biosynthesis, transport and/or utilisation.
Probab=97.74 E-value=0.00015 Score=48.97 Aligned_cols=90 Identities=21% Similarity=0.282 Sum_probs=63.9
Q ss_pred CCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC-----------CCCCC-CEEEECCCCHHHHHHHHHH
Q ss_conf 83137967888504553068999997068788327864112133-----------34698-1783011220799999997
Q gi|254780313|r 63 QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM-----------EPILG-VKFFKFDFLDLDSWEFIRQ 130 (227)
Q Consensus 63 ~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~-----------~~i~g-v~~~~gDi~~~~~~~~i~~ 130 (227)
+++++|.+|+|+.|+=|.|+-.+++.. ...+|+|+|+.|- ..+.+ +..++||..+. +
T Consensus 96 ~~~~~ge~VlD~faGvG~f~l~~ak~~----~~~~V~a~DlNp~a~~~l~~N~~lN~v~~~i~~~~gD~~~~-----~-- 164 (199)
T pfam02475 96 KLVKEGEVVVDMFAGIGPFSIPIAKHS----KAKRVYAVELNPEAVKYLKENIKLNKVEGVISPILGDVRDV-----I-- 164 (199)
T ss_pred HHCCCCCEEEECCCCCCHHHHHHHHCC----CCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHHH-----C--
T ss_conf 744899889981688657789986407----86489998289999999999999809998369992878786-----0--
Q ss_pred HCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 3138874897532021102221015788989998898764114877469
Q gi|254780313|r 131 AIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179 (227)
Q Consensus 131 ~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~f 179 (227)
..+++|.|+.+. |.. +..-|..|+..|++||..
T Consensus 165 -~~~~~Drvimnl-P~~--------------a~~fL~~A~~~lk~gg~i 197 (199)
T pfam02475 165 -LEGVADRVIMNL-PKS--------------AHEFLDKALRAVKDGGVI 197 (199)
T ss_pred -CCCCCCEEEECC-CCC--------------HHHHHHHHHHHHCCCCEE
T ss_conf -467400999489-731--------------699999999985589898
No 74
>pfam08242 Methyltransf_12 Methyltransferase domain. Members of this family are SAM dependent methyltransferases.
Probab=97.70 E-value=5.1e-05 Score=51.91 Aligned_cols=87 Identities=20% Similarity=0.233 Sum_probs=52.2
Q ss_pred EEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC-C----------CCCCCEEEECCCCHHHHHHHHHHHCCCCCCEEE
Q ss_conf 88504553068999997068788327864112133-3----------469817830112207999999973138874897
Q gi|254780313|r 72 VDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM-E----------PILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVL 140 (227)
Q Consensus 72 lDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~-~----------~i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVl 140 (227)
||+||++|.++..+++... ...|+|+|+.+- - +.....+++.+..+. .....+.||+|+
T Consensus 1 LDvGcG~G~~~~~l~~~~~----~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~fD~I~ 70 (98)
T pfam08242 1 LDIGCGTGTLLRALLEALP----GLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDA------IDLDPGSFDVVV 70 (98)
T ss_pred CCCCCCCCHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHHCCCCCHHHEEECCCH------HHCCCCCCCEEE
T ss_conf 9886337999999998789----988999859889999999999871345311100000002------220358988996
Q ss_pred ECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 532021102221015788989998898764114877469
Q gi|254780313|r 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179 (227)
Q Consensus 141 SDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~f 179 (227)
|-.+..-. -|. ..++.-+.++|+|||.+
T Consensus 71 ~~~vl~~~----~~~-------~~~l~~~~r~LkpgG~l 98 (98)
T pfam08242 71 ASNVLHHL----ADP-------RAVLRNLRRLLKPGGVL 98 (98)
T ss_pred ECCCHHHC----CCH-------HHHHHHHHHHCCCCCCC
T ss_conf 10417725----899-------99999999974999899
No 75
>KOG1540 consensus
Probab=97.68 E-value=0.00057 Score=45.31 Aligned_cols=140 Identities=19% Similarity=0.203 Sum_probs=90.7
Q ss_pred CCHHHHHHHHHHHHHHC-----CC--------C--CCCCEEEEEECCCCHHHHHHHHHHCCC--CCCEEEEEECCCC---
Q ss_conf 84479999999998645-----83--------1--379678885045530689999970687--8832786411213---
Q gi|254780313|r 46 GWRARSAYKLLQINEKH-----QI--------L--QSNRRIVDLGSSPGSWSQVAARITGSN--ANNTRVVAIDILD--- 105 (227)
Q Consensus 46 gyrsRaafKL~eId~kf-----~l--------~--k~g~~VlDLGaaPGgWsQva~~~~~~~--~~~~~VigVDl~~--- 105 (227)
.--++-|+|+-.+++-- +| + .+++.|||+|++.|--+=-+.+.+++. ....+|..+|+.|
T Consensus 64 ~vF~~vA~~YD~mND~mSlGiHRlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL 143 (296)
T KOG1540 64 HVFESVAKKYDIMNDAMSLGIHRLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHML 143 (296)
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCHHHH
T ss_conf 99998888887788876212367888876621587778758983477525677798761134577776179993898999
Q ss_pred -----------CCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf -----------334698178301122079999999731388748975320211022210157889899988987641148
Q gi|254780313|r 106 -----------MEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLN 174 (227)
Q Consensus 106 -----------~~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk 174 (227)
..+-..+.++.||..+.. +-...+|..+.-. |++..-|. +.+|.-|-++||
T Consensus 144 ~vgkqRa~~~~l~~~~~~~w~~~dAE~Lp-------Fdd~s~D~yTiaf-----GIRN~th~------~k~l~EAYRVLK 205 (296)
T KOG1540 144 AVGKQRAKKRPLKASSRVEWVEGDAEDLP-------FDDDSFDAYTIAF-----GIRNVTHI------QKALREAYRVLK 205 (296)
T ss_pred HHHHHHHHHCCCCCCCCEEEEECCCCCCC-------CCCCCCEEEEEEC-----CEECCCCH------HHHHHHHHHHCC
T ss_conf 99987775159776871699947701089-------9977511588842-----11147877------899999987527
Q ss_pred CCCEEEEEEECCCCHHHHHHHHHHHCCEE
Q ss_conf 77469999305999899999998625846
Q gi|254780313|r 175 IGGDFLVKTFQGGTTNDILCLLKKHFQKV 203 (227)
Q Consensus 175 ~gG~fV~K~F~G~~~~~l~~~l~~~F~~V 203 (227)
|||.|.|=-|.-.+-+.+......++-.|
T Consensus 206 pGGrf~cLeFskv~~~~l~~fy~~ysf~V 234 (296)
T KOG1540 206 PGGRFSCLEFSKVENEPLKWFYDQYSFDV 234 (296)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 78679999735454077899997122232
No 76
>TIGR02081 metW methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In Pseudomonas putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells . .
Probab=97.66 E-value=5.8e-05 Score=51.56 Aligned_cols=75 Identities=17% Similarity=0.234 Sum_probs=53.4
Q ss_pred CCCCCCCCEEEEEECCCCHHHHHHHHHHCCCC---CCEEEEEECCCC---CCC-CCCCEEEECCCCHHHHHHHHHHHCCC
Q ss_conf 58313796788850455306899999706878---832786411213---334-69817830112207999999973138
Q gi|254780313|r 62 HQILQSNRRIVDLGSSPGSWSQVAARITGSNA---NNTRVVAIDILD---MEP-ILGVKFFKFDFLDLDSWEFIRQAIGG 134 (227)
Q Consensus 62 f~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~---~~~~VigVDl~~---~~~-i~gv~~~~gDi~~~~~~~~i~~~l~~ 134 (227)
+++|.||.+||||||+=|.=+.+..+.-.-.| ..-++.||-+.. ++. -.||..||+|+.+- +..+-+.
T Consensus 8 ~~~Ip~GSRVLDLGCGdG~LL~~L~d~k~v~GPPttehRL~G~Eid~~~v~Ac~~RGv~VIq~Dld~G-----L~~F~D~ 82 (205)
T TIGR02081 8 LDLIPPGSRVLDLGCGDGELLALLRDEKQVRGPPTTEHRLYGIEIDQDGVLACVARGVSVIQGDLDEG-----LEAFPDK 82 (205)
T ss_pred HHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEECHHHHHHHHHCCCCEECCCCCCC-----CCCCCCC
T ss_conf 86168887364101688789999997437898887120001023454459999862520130060034-----0116788
Q ss_pred CCCEEEE
Q ss_conf 8748975
Q gi|254780313|r 135 NPDLVLS 141 (227)
Q Consensus 135 ~~DlVlS 141 (227)
.||.|+=
T Consensus 83 ~FD~ViL 89 (205)
T TIGR02081 83 SFDYVIL 89 (205)
T ss_pred CCCEEEE
T ss_conf 7662542
No 77
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=97.66 E-value=0.00057 Score=45.32 Aligned_cols=129 Identities=22% Similarity=0.262 Sum_probs=77.0
Q ss_pred EEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC---------C--CCCCCEEEECCCCHHHHHHHHHHHCCCCCCE
Q ss_conf 7888504553068999997068788327864112133---------3--4698178301122079999999731388748
Q gi|254780313|r 70 RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM---------E--PILGVKFFKFDFLDLDSWEFIRQAIGGNPDL 138 (227)
Q Consensus 70 ~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~---------~--~i~gv~~~~gDi~~~~~~~~i~~~l~~~~Dl 138 (227)
+|+||||+-|-=.-.++...+ ...|+|+|+.+- + .+.++.++++|.++. +.++||+
T Consensus 113 ~ilDlGTGSG~iai~la~~~~----~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~---------~~~~fDl 179 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGP----DAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEP---------LRGKFDL 179 (280)
T ss_pred CEEEECCCCCHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCHHHC---------CCCCCCE
T ss_conf 189965883199999996189----887999989999999999999982897479874003334---------6888577
Q ss_pred EEECCCHHHCCC------CCCHH---------HHHHHHHHHHHHHHHHCCCCCCEEEEEEE--CCCCHHHHHHHHHHHCC
Q ss_conf 975320211022------21015---------78898999889876411487746999930--59998999999986258
Q gi|254780313|r 139 VLSDMAYPTIGH------RKIDH---------LRTMSLCEAATFFALEMLNIGGDFLVKTF--QGGTTNDILCLLKKHFQ 201 (227)
Q Consensus 139 VlSDmapn~SG~------~~~D~---------~~~~~L~~~al~~A~~~Lk~gG~fV~K~F--~G~~~~~l~~~l~~~F~ 201 (227)
|+|-- |=+... ...++ ..-++.....+.-+..+|++||.+++-+= |+....+++..... |.
T Consensus 180 IVsNP-PYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~~~~~~-~~ 257 (280)
T COG2890 180 IVSNP-PYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALFEDTGF-FE 257 (280)
T ss_pred EEECC-CCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCC-CE
T ss_conf 99689-98888521137421358979987248777899999999899872868289999769848999999997498-44
Q ss_pred EEEEECCCCCCC
Q ss_conf 469976866575
Q gi|254780313|r 202 KVIHVKPVASRA 213 (227)
Q Consensus 202 ~V~~~KP~aSR~ 213 (227)
.|...|.-+.+.
T Consensus 258 ~v~~~~d~~g~~ 269 (280)
T COG2890 258 IVETLKDLFGRD 269 (280)
T ss_pred EEEEEECCCCCE
T ss_conf 766551456763
No 78
>pfam06325 PrmA Ribosomal protein L11 methyltransferase (PrmA). This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences.
Probab=97.66 E-value=4.8e-05 Score=52.05 Aligned_cols=119 Identities=16% Similarity=0.245 Sum_probs=66.5
Q ss_pred CCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCC---CCCCEEE--ECCCCHHHHHHHHHHHCCCCCCE
Q ss_conf 313796788850455306899999706878832786411213334---6981783--01122079999999731388748
Q gi|254780313|r 64 ILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP---ILGVKFF--KFDFLDLDSWEFIRQAIGGNPDL 138 (227)
Q Consensus 64 l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~---i~gv~~~--~gDi~~~~~~~~i~~~l~~~~Dl 138 (227)
..++|++|||+||+-|=-+- |+.+.|. ..|+|+|+.|..- .+|+..- ...+.-. .......+++|+
T Consensus 157 ~~~~~~~vlD~GcGSGILaI-aA~klGa----~~v~a~DiDp~Av~~a~eN~~~N~v~~~~~~~----~~~~~~~~~~Dl 227 (294)
T pfam06325 157 LVKPGETVLDVGCGSGILAI-AALKLGA----KKVVGVDIDPVAVRAAKENAELNGVEAQLEVY----LPGDLPEGKADV 227 (294)
T ss_pred HCCCCCEEEEECCCHHHHHH-HHHHCCC----CCEEEEECCHHHHHHHHHHHHHCCCCCCEEEE----CCCCCCCCCCCE
T ss_conf 50369867850565089999-9997599----96899988899999999999976998317996----443155664578
Q ss_pred EEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHCCEEEE
Q ss_conf 9753202110222101578898999889876411487746999930599989999999862584699
Q gi|254780313|r 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205 (227)
Q Consensus 139 VlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~~~F~~V~~ 205 (227)
|++-+-.++ |... .......|+|||.+++-=+--....++...++..|.-+..
T Consensus 228 IvANIla~~-------------L~~l-~~~~~~~l~~~G~lilSGil~~q~~~v~~a~~~g~~~~~~ 280 (294)
T pfam06325 228 VVANILADP-------------LIEL-APDIYALVKPGGYLILSGILEEQADDVAEAYSQGFELITV 280 (294)
T ss_pred EEEHHCHHH-------------HHHH-HHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf 984108999-------------9999-9999997389989999178289999999999869977437
No 79
>PRK04457 spermidine synthase; Provisional
Probab=97.64 E-value=0.0027 Score=41.08 Aligned_cols=130 Identities=18% Similarity=0.247 Sum_probs=85.6
Q ss_pred CCCC-CCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC----------CC--CCCCEEEECCCCHHHHHHHHHH
Q ss_conf 3137-967888504553068999997068788327864112133----------34--6981783011220799999997
Q gi|254780313|r 64 ILQS-NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM----------EP--ILGVKFFKFDFLDLDSWEFIRQ 130 (227)
Q Consensus 64 l~k~-g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~----------~~--i~gv~~~~gDi~~~~~~~~i~~ 130 (227)
+|.| -.+||-||-+-|+-+-++.+..+ ..+|.+|+|.|- -| -+.+..+.+|- .+.+.+
T Consensus 62 Lf~p~Pk~vl~iGLGgGsl~k~~~~~~P----~~~i~~VEIdp~Vi~vAr~~F~lP~dd~Rl~V~~~Dg-----~~fv~~ 132 (262)
T PRK04457 62 LFNPRPQHILQIGLGGGSFAKFIDTYLP----DTRQTAVEINPQVIAVARNHFELPFEDEKFEIIEADG-----AEYIKV 132 (262)
T ss_pred HCCCCCCEEEEEECCHHHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHCCCCCCCCCEEEEECCH-----HHHHHH
T ss_conf 6589978699992570199999998398----6758999878899999998657999997269995538-----999854
Q ss_pred HCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECC-CCHHHHHHHHHHHCC-EEEEECC
Q ss_conf 31388748975320211022210157889899988987641148774699993059-998999999986258-4699768
Q gi|254780313|r 131 AIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG-GTTNDILCLLKKHFQ-KVIHVKP 208 (227)
Q Consensus 131 ~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G-~~~~~l~~~l~~~F~-~V~~~KP 208 (227)
..+++|+|+.|+ .+-.|... +..+ ..=+.-|...|+++|.||+-+|.+ ..+...+..++..|. .|..+.+
T Consensus 133 -~~~~~DvI~vD~-fd~~g~~~--~L~t----~~Fy~~c~~~L~~~Gvlv~Nl~~~~~~~~~~l~~i~~~F~~~~~~~~~ 204 (262)
T PRK04457 133 -FPASTDVILVDG-FDGEQIVD--ALVT----QPFFRDCRNALSSDGVFVTNLWSGDKRYQRYIERLLSVFEGRVLELPA 204 (262)
T ss_pred -CCCCCCEEEEEC-CCCCCCCC--CCCC----HHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCEEEEEEC
T ss_conf -867778899968-89888860--0082----999999998649893999986889986599999999972873999725
Q ss_pred CC
Q ss_conf 66
Q gi|254780313|r 209 VA 210 (227)
Q Consensus 209 ~a 210 (227)
..
T Consensus 205 ~~ 206 (262)
T PRK04457 205 ES 206 (262)
T ss_pred CC
T ss_conf 89
No 80
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.63 E-value=0.00021 Score=48.08 Aligned_cols=92 Identities=22% Similarity=0.279 Sum_probs=67.5
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------C--CCCCCCEEEECCCCHHHHHHHHHHHCC
Q ss_conf 13796788850455306899999706878832786411213---------3--346981783011220799999997313
Q gi|254780313|r 65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------M--EPILGVKFFKFDFLDLDSWEFIRQAIG 133 (227)
Q Consensus 65 ~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~--~~i~gv~~~~gDi~~~~~~~~i~~~l~ 133 (227)
++|+++|||+|++-|--+-++++++++.+ +|++||..+ + -.+.||.++.||...--. -.
T Consensus 74 l~~~~~VLeIGtGsGY~tAlla~lvg~~g---~V~siE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~G~~-------~~ 143 (214)
T PRK13942 74 LDEGQKVLEIGTGSGYHAAVVAEIVGKSG---KVTTIERIPELAEKAKKNLKKLGYENVEVILGDGTKGYE-------EN 143 (214)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHCCCC---CEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC-------CC
T ss_conf 99999799967995299999999747678---579997179999999999986376875898567566784-------45
Q ss_pred CCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf 88748975320211022210157889899988987641148774699993
Q gi|254780313|r 134 GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT 183 (227)
Q Consensus 134 ~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~ 183 (227)
.+||.|+..+|... +-. --...|++||.+|+-+
T Consensus 144 apfD~Iiv~aa~~~-----iP~------------~l~~qL~~gGrLV~Pv 176 (214)
T PRK13942 144 APYDRIYVTAAGPD-----IPK------------PLLEQLKDGGIMVIPV 176 (214)
T ss_pred CCCCEEEEEECCCC-----CCH------------HHHHHCCCCCEEEEEE
T ss_conf 98127999851765-----789------------9999628895899998
No 81
>pfam04989 CmcI Cephalosporin hydroxylase. Members of this family are about 220 amino acids long. The CmcI protein is presumed to represent the cephalosporin-7--hydroxylase. However this has not been experimentally verified.
Probab=97.60 E-value=0.00097 Score=43.88 Aligned_cols=104 Identities=18% Similarity=0.151 Sum_probs=72.5
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC------CCCCCCCEEEECCCCHHHHHHHHHHHCCCCC-CEE
Q ss_conf 796788850455306899999706878832786411213------3346981783011220799999997313887-489
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD------MEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLV 139 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~------~~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~-DlV 139 (227)
+=+.|+++|.|-||=+-+.+..+..-+..++|+|||+.. .-.-+.+++++||-++.++.+.+.......- =+|
T Consensus 32 kPd~IIE~G~a~GGS~l~~A~~l~~~~~~~~VigiDi~i~~~~~~~i~~~~I~lieg~s~d~~~~~~v~~~~~~~~~vlV 111 (202)
T pfam04989 32 KPDLIIETGIAHGGSALFFASMLELLGSDGKVLGIDIDIREHNRPAIEAPRITFIQGSSTDPEIIEQVRSLAEPPHPVLV 111 (202)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCEEE
T ss_conf 99989996167662899999999973899879999576443354353168769997685678899889998537985899
Q ss_pred EECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 7532021102221015788989998898764114877469999
Q gi|254780313|r 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK 182 (227)
Q Consensus 140 lSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K 182 (227)
+-| .+++.+| +...|++-..++.+|.-+|+-
T Consensus 112 ilD------s~Ht~~h------Vl~eL~~y~~lv~~GsY~IVe 142 (202)
T pfam04989 112 ILD------SDHTHEH------VLAELRAYAPLVSEGSYLVVE 142 (202)
T ss_pred EEC------CCCCHHH------HHHHHHHHHHHCCCCCEEEEE
T ss_conf 964------8865688------999999875215768899995
No 82
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.59 E-value=0.00075 Score=44.59 Aligned_cols=103 Identities=17% Similarity=0.192 Sum_probs=63.8
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC-----------CCC-CCCEEEECCCCHHHHHHHHHHHCCC
Q ss_conf 7967888504553068999997068788327864112133-----------346-9817830112207999999973138
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM-----------EPI-LGVKFFKFDFLDLDSWEFIRQAIGG 134 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~-----------~~i-~gv~~~~gDi~~~~~~~~i~~~l~~ 134 (227)
+..+|||||++.|--.--++... .+..|+|+|+.+- -.+ ..+.|+++|.++. .-++
T Consensus 135 ~~~~ILDLGTGSGcIaISLa~e~----p~a~v~avDIS~~AL~vAk~Na~~~~v~~ri~fi~sdwfe~--------l~~~ 202 (503)
T PRK01544 135 KFLNILELGTGSGCIAISLLCEL----PNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN--------IGKQ 202 (503)
T ss_pred CCCEEEEECCCHHHHHHHHHHHC----CCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCHHC--------CCCC
T ss_conf 57727884666799999999867----89989999898999999999999808820179996553101--------5888
Q ss_pred CCCEEEECCCHHHCCCC--------CCHHHHH---------HHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf 87489753202110222--------1015788---------9899988987641148774699993
Q gi|254780313|r 135 NPDLVLSDMAYPTIGHR--------KIDHLRT---------MSLCEAATFFALEMLNIGGDFLVKT 183 (227)
Q Consensus 135 ~~DlVlSDmapn~SG~~--------~~D~~~~---------~~L~~~al~~A~~~Lk~gG~fV~K~ 183 (227)
+||+|+|- |.---.. ..++.=. ++-......-|..+|+|||.+++-+
T Consensus 203 kFDlIVSN--PPYI~~~e~~~L~~eV~~yEP~lAL~ggeDGL~~Yr~Ia~~a~~~Lkp~G~l~lEI 266 (503)
T PRK01544 203 KFDFIVSN--PPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI 266 (503)
T ss_pred CCCEEEEC--CCCCCHHHHHHCCHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 72479838--99887566665276653169378864887628999999998898528898899997
No 83
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=97.58 E-value=0.00043 Score=46.08 Aligned_cols=108 Identities=17% Similarity=0.198 Sum_probs=70.2
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC------CCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCEEE
Q ss_conf 796788850455306899999706878832786411213------33469817830112207999999973138874897
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD------MEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVL 140 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~------~~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVl 140 (227)
...+|||+||+-|.++.-+.+..+.. ....++|+||.. ...-+.+.+..+|..+.. +.++.+|+|+
T Consensus 85 ~~~~ilD~GCGEGyYl~~l~~~l~~~-~~~~~~G~DiSK~ai~~Aak~~~~~~~~Va~~~~lP-------~~d~s~D~vl 156 (272)
T PRK11088 85 KATAILDIGCGEGYYTHALADALPEV-TTCQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLP-------FADQSLDAII 156 (272)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHCC-CCCCEEEEECCHHHHHHHHCCCCCCEEEEEECCCCC-------CCCCCCEEEE
T ss_conf 78648881587778999999974115-787379981179999999626888549996100188-------8766540899
Q ss_pred ECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC-HHHHHHHHHHHCCEEE
Q ss_conf 532021102221015788989998898764114877469999305999-8999999986258469
Q gi|254780313|r 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT-TNDILCLLKKHFQKVI 204 (227)
Q Consensus 141 SDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~-~~~l~~~l~~~F~~V~ 204 (227)
+=-||--. + -..++|+|||.+|.=+ -|.+ ..+|...+ |..++
T Consensus 157 ~vFsP~~~-----~-------------Ef~RvLkp~G~li~V~-P~~~HL~eLre~l---Y~~~~ 199 (272)
T PRK11088 157 RIYAPCKA-----E-------------ELARVVKPGGIVITVT-PGPRHLFELKGLI---YDEVR 199 (272)
T ss_pred EEECCCCH-----H-------------HHHHEECCCCEEEEEE-CCHHHHHHHHHHH---HHCCC
T ss_conf 98437885-----8-------------8612463797899997-8888999999997---51566
No 84
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=97.57 E-value=0.0009 Score=44.09 Aligned_cols=122 Identities=20% Similarity=0.190 Sum_probs=76.2
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC---------C--CCCCCEEEECCCCHHHHHHHHHHHCC
Q ss_conf 137967888504553068999997068788327864112133---------3--46981783011220799999997313
Q gi|254780313|r 65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM---------E--PILGVKFFKFDFLDLDSWEFIRQAIG 133 (227)
Q Consensus 65 ~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~---------~--~i~gv~~~~gDi~~~~~~~~i~~~l~ 133 (227)
++|++.|.|+||+.|+.+--++...+ +++|++||..+- + -+.++..+.|+. +.. +.
T Consensus 28 l~~~~vvwDIGaGsGsvsiEaa~~~p----~~~V~AvE~~~~~~~~i~~N~~~fg~~nv~~i~g~A--p~~-------l~ 94 (186)
T PRK08287 28 LHRAKHLIDVGAGTGSVSIEAALQFP----SLQVTAIERNPAALRLIKENRQRFGCGNIDIIPGEA--PIT-------LT 94 (186)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCC--CHH-------CC
T ss_conf 99999999957887789999999789----988999937989999999989972999879993778--110-------35
Q ss_pred CCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHH-CCEEEEECCCCCC
Q ss_conf 887489753202110222101578898999889876411487746999930599989999999862-5846997686657
Q gi|254780313|r 134 GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH-FQKVIHVKPVASR 212 (227)
Q Consensus 134 ~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~~~-F~~V~~~KP~aSR 212 (227)
..+|.|.==+ ||- . ....++.+...|++||.+|+-.-.=+........++.. |..+.++.-..||
T Consensus 95 ~~pD~vFIGG----sgg-~---------l~~il~~~~~~L~~gGriVinavtlet~~~a~~~~~~~~~~~~e~~qv~vsr 160 (186)
T PRK08287 95 GKADAIFMGG----SGG-H---------LTAIIDWALGHLHPGGRLVLNFILQENLHSALAHLEKIGACELDCVQLQVSS 160 (186)
T ss_pred CCCCEEEEEC----CCC-C---------HHHHHHHHHHHCCCCCEEEEEEEEHHHHHHHHHHHHHCCCCCEEEEEEEEEE
T ss_conf 7898499974----789-8---------8999999997579998999982608779999999997699761599999013
Q ss_pred C
Q ss_conf 5
Q gi|254780313|r 213 A 213 (227)
Q Consensus 213 ~ 213 (227)
.
T Consensus 161 ~ 161 (186)
T PRK08287 161 L 161 (186)
T ss_pred C
T ss_conf 7
No 85
>pfam09445 Methyltransf_15 RNA cap guanine-N2 methyltransferase. RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe Tgs1 and Giardia lamblia Tgs2 catalyse methylation of the exocyclic N2 amine of 7-methylguanosine.
Probab=97.57 E-value=0.00044 Score=46.05 Aligned_cols=115 Identities=17% Similarity=0.115 Sum_probs=67.2
Q ss_pred CCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCC--------CC----CCCEEEECCCCHHHHHHHHHHHCCCC
Q ss_conf 9678885045530689999970687883278641121333--------46----98178301122079999999731388
Q gi|254780313|r 68 NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME--------PI----LGVKFFKFDFLDLDSWEFIRQAIGGN 135 (227)
Q Consensus 68 g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~--------~i----~gv~~~~gDi~~~~~~~~i~~~l~~~ 135 (227)
...|||++|+-||++--.+... .+|+|||+.+.. .+ ..+.|++||+++.. ..+ +.-+.+
T Consensus 1 ~~ivlD~fcG~Ggn~I~fA~~~------~~Vi~vDi~~~~l~~A~~NA~iyGV~drI~fi~gD~f~~~--~~l-~~~~~~ 71 (165)
T pfam09445 1 ARIILDVFCGAGGNTIQFANVF------CSVIGIDINPEHLACAQHNAEVYGVSDRIWFILGDWFELL--AKL-KFGKIP 71 (165)
T ss_pred CCEEEECCCCCCHHHHHHHHHC------CEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHH--HHH-HHCCCC
T ss_conf 9799993778079999999758------9899997989999999998998398731799977599997--887-635887
Q ss_pred CCEEEEC---CCHHHCCCCCCHHHHHH------HHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHH
Q ss_conf 7489753---20211022210157889------899988987641148774699993059998999999986
Q gi|254780313|r 136 PDLVLSD---MAYPTIGHRKIDHLRTM------SLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKK 198 (227)
Q Consensus 136 ~DlVlSD---mapn~SG~~~~D~~~~~------~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~~ 198 (227)
+|+|.+| +.|+.+.....|-..++ +|...+..++ + ++++=+=+..+.+++......
T Consensus 72 ~DvVf~sPPWGGp~Y~~~~~fdl~~~~~p~~~~~l~~~~~~it-----~--ni~lfLPrn~d~~ql~~~~~~ 136 (165)
T pfam09445 72 YDCVFLSPPWGGPSYKRQNVYDLEKKLKPYGLYQLLKESTEIS-----K--NIILFLPRNSDLNQLSSLTRE 136 (165)
T ss_pred CCEEEECCCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHC-----C--CEEEECCCCCCHHHHHHHHHH
T ss_conf 5589977999998856567668777268779999999998636-----2--579984898998999998776
No 86
>pfam05401 NodS Nodulation protein S (NodS). This family consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors.
Probab=97.55 E-value=0.00019 Score=48.36 Aligned_cols=115 Identities=17% Similarity=0.265 Sum_probs=77.4
Q ss_pred CCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCE
Q ss_conf 96788850455306899999706878832786411213---------334698178301122079999999731388748
Q gi|254780313|r 68 NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------MEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDL 138 (227)
Q Consensus 68 g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~Dl 138 (227)
-.+++++|||-|-+|+-.+.++. .++++|+.+ +...++|.+.++|+-.. ...++||+
T Consensus 44 y~~alE~GCa~G~lT~~LA~RCd------rLla~Dvs~~Av~~Ar~Rla~~~hV~v~~~~vp~~--------wP~~~FDL 109 (201)
T pfam05401 44 IANALEVGCAAGAFTERLAPYCQ------RLTVIDVMPEAIARARLRMKKWSHISWIVSDVQQF--------STNELFDL 109 (201)
T ss_pred HHHHCCCCCCCCHHHHHHHHHHH------HHHHHCCCHHHHHHHHHHHCCCCCCEEEECCCCCC--------CCCCCEEE
T ss_conf 30020435662487899999874------67321362999999999855799828982566665--------99888627
Q ss_pred EEEC-CCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEC-------C--CCHHHHHHHHHHHCCEEEE
Q ss_conf 9753-2021102221015788989998898764114877469999305-------9--9989999999862584699
Q gi|254780313|r 139 VLSD-MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ-------G--GTTNDILCLLKKHFQKVIH 205 (227)
Q Consensus 139 VlSD-mapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~-------G--~~~~~l~~~l~~~F~~V~~ 205 (227)
|+.- .. ..--|.+. ...++.-....|.|||+||.--.. | .+.+.++..++....+|..
T Consensus 110 IV~SEVl-----YYL~d~a~----lr~~~~~~v~~LaP~G~Lvfgsarda~crrwgh~~gaetv~~~~~e~l~eve~ 177 (201)
T pfam05401 110 IVVAEVL-----YYLGDVAE----MRGAVRNLVSMLAPDGQLVFGSARDANCRRWGHVAGAETVIALLNESLREVER 177 (201)
T ss_pred EEEEHHH-----HHHCCHHH----HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9751477-----86187999----99999999997189965997304510665510111189999999988778877
No 87
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase; InterPro: IPR014122 MenG is a generic term for a methyltransferase that catalyses the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species..
Probab=97.47 E-value=0.00025 Score=47.55 Aligned_cols=118 Identities=15% Similarity=0.208 Sum_probs=83.3
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC-----------CCCCCCCEEEECCCCHHHHHHHHHHHCCC
Q ss_conf 3796788850455306899999706878832786411213-----------33469817830112207999999973138
Q gi|254780313|r 66 QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-----------MEPILGVKFFKFDFLDLDSWEFIRQAIGG 134 (227)
Q Consensus 66 k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~-----------~~~i~gv~~~~gDi~~~~~~~~i~~~l~~ 134 (227)
+.|..+||+||+.+-|+-..++.+|..| .|.|+|... -..+..+..+.|+..+... -+.
T Consensus 44 ~~G~~~ldvCCGt~dW~~~l~~~~G~~G---~v~Gldfs~nml~~~~~k~~~~~~~~~~l~hGnam~lP~-------~~~ 113 (231)
T TIGR02752 44 QKGKKALDVCCGTADWAIALAEAVGKEG---EVKGLDFSENMLSVGKQKVKDAKLSNVELVHGNAMELPY-------DDN 113 (231)
T ss_pred HHCCHHHHHCCCCHHHHHHHHHHHCCCC---CEEEEHHHHHHHHHHHHHHHHHHHHHEEEECCCHHCCCC-------CCC
T ss_conf 4041211210373378889888617777---167400358899999988875432002223052001787-------766
Q ss_pred CCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHCCEEE
Q ss_conf 8748975320211022210157889899988987641148774699993059998999999986258469
Q gi|254780313|r 135 NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204 (227)
Q Consensus 135 ~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~~~F~~V~ 204 (227)
.||-|+--- |.+.+..+ ..+|.-..++.+|||..||=--.-+....+....-.+|+.|-
T Consensus 114 ~fdyvtiGf-----GlrnvPdy------~~vl~em~rv~kPGG~~~C~~tsqP~~~~~~q~y~~yf~~~m 172 (231)
T TIGR02752 114 SFDYVTIGF-----GLRNVPDY------MTVLKEMARVVKPGGKVVCLETSQPTLPGFKQLYFFYFKYIM 172 (231)
T ss_pred CCCEEEECC-----CCCCHHHH------HHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHH
T ss_conf 612577525-----51230269------999999888627997179862577625799999999999998
No 88
>pfam01795 Methyltransf_5 MraW methylase family. Members of this family are probably SAM dependent methyltransferases based on Escherichia coli mraW. This family appears to be related to pfam01596.
Probab=97.45 E-value=0.011 Score=37.31 Aligned_cols=84 Identities=20% Similarity=0.250 Sum_probs=57.9
Q ss_pred HHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC---------CC-CCCCEEEECCCCHHHH
Q ss_conf 9999864583137967888504553068999997068788327864112133---------34-6981783011220799
Q gi|254780313|r 55 LLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM---------EP-ILGVKFFKFDFLDLDS 124 (227)
Q Consensus 55 L~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~---------~~-i~gv~~~~gDi~~~~~ 124 (227)
|.|+.+-... +|+..+||.-.+-||-|+.+.+..++ .|+|+|+|.-+. .+ -..+.+++++|.+...
T Consensus 9 l~Evi~~L~~-~~~g~yvD~T~G~GGHS~~iL~~~~~---~~~li~iDrD~~ai~~a~~~l~~~~~r~~~~~~nF~~l~~ 84 (310)
T pfam01795 9 LQEVVELLNI-KPDGIYIDCTLGGGGHSEAILEQLPE---EGRLIGIDRDPQAIANAKERLKPFKGRVTLIHSNFANLFA 84 (310)
T ss_pred HHHHHHHCCC-CCCCEEEEECCCCCHHHHHHHHHCCC---CCEEEEEECCHHHHHHHHHHCCCCCCCEEEEECCHHHHHH
T ss_conf 9999972683-89999999588971999999984899---9979999898999999998530258858999253757999
Q ss_pred HHHHHHHCCCCCCEEEECCC
Q ss_conf 99999731388748975320
Q gi|254780313|r 125 WEFIRQAIGGNPDLVLSDMA 144 (227)
Q Consensus 125 ~~~i~~~l~~~~DlVlSDma 144 (227)
. +...--.++|-|+-|.+
T Consensus 85 ~--l~~~~~~~vdGil~DLG 102 (310)
T pfam01795 85 Y--LKELGVGKVDGILFDLG 102 (310)
T ss_pred H--HHHCCCCCCCEEEEECC
T ss_conf 9--98759876678999644
No 89
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.45 E-value=0.0039 Score=40.11 Aligned_cols=137 Identities=17% Similarity=0.171 Sum_probs=83.3
Q ss_pred CEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC------CC---------CCCCEEEECCCCHHHHHHHHHHHCC
Q ss_conf 67888504553068999997068788327864112133------34---------6981783011220799999997313
Q gi|254780313|r 69 RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM------EP---------ILGVKFFKFDFLDLDSWEFIRQAIG 133 (227)
Q Consensus 69 ~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~------~~---------i~gv~~~~gDi~~~~~~~~i~~~l~ 133 (227)
..||=+|-+.||++..+.+.... -+++.|||.+. +. -+.+..+.+| ..+.+.+.-
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~v----e~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~D-----g~~~v~~~~- 147 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPV----ERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDD-----GVEFLRDCE- 147 (282)
T ss_pred CEEEEECCCCCHHHHHHHHCCCC----CEEEEEECCHHHHHHHHHHCCCCCCCCCCCCEEEEECC-----HHHHHHHCC-
T ss_conf 76999889766999999836884----33799970889999999866675433579736899610-----799987488-
Q ss_pred CCCCEEEECCCHHHCCCC-CCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE---E-ECCCCHHHHHHHHHHHCCEEEEE-C
Q ss_conf 887489753202110222-1015788989998898764114877469999---3-05999899999998625846997-6
Q gi|254780313|r 134 GNPDLVLSDMAYPTIGHR-KIDHLRTMSLCEAATFFALEMLNIGGDFLVK---T-FQGGTTNDILCLLKKHFQKVIHV-K 207 (227)
Q Consensus 134 ~~~DlVlSDmapn~SG~~-~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K---~-F~G~~~~~l~~~l~~~F~~V~~~-K 207 (227)
.++|||+.|.-... |.. ..... .-..-+.+.|+++|.||+- . ++.+........++..|..+..+ .
T Consensus 148 ~~fDvIi~D~tdp~-gp~~~Lft~-------eFy~~~~~~L~~~Gi~v~q~~~~~~~~~~~~~~~~~~~~vf~~~~~~~~ 219 (282)
T COG0421 148 EKFDVIIVDSTDPV-GPAEALFTE-------EFYEGCRRALKEDGIFVAQAGSPFLQDEEIALAYRNVSRVFSIVPPYVA 219 (282)
T ss_pred CCCCEEEECCCCCC-CCCCCCCCH-------HHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEE
T ss_conf 76778998588998-843023779-------9999999862889689994478432407899999877753435655210
Q ss_pred CCCCCCCCCEEEEEEC
Q ss_conf 8665755824989830
Q gi|254780313|r 208 PVASRAESVEMFLLAK 223 (227)
Q Consensus 208 P~aSR~~S~E~Ylv~~ 223 (227)
|.-+=....+.|+++-
T Consensus 220 ~ipt~~~g~~~f~~~s 235 (282)
T COG0421 220 PIPTYPSGFWGFIVAS 235 (282)
T ss_pred CCCEECCCCEEEEEEE
T ss_conf 2412227815899961
No 90
>pfam01170 UPF0020 Putative RNA methylase family UPF0020. This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains.
Probab=97.41 E-value=0.0011 Score=43.51 Aligned_cols=109 Identities=22% Similarity=0.205 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC-----------CCCC-CCEEE
Q ss_conf 47999999999864583137967888504553068999997068788327864112133-----------3469-81783
Q gi|254780313|r 48 RARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM-----------EPIL-GVKFF 115 (227)
Q Consensus 48 rsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~-----------~~i~-gv~~~ 115 (227)
+..=|.-|+.+-. .++++.|+|.+|+-|+..-=|+. .+. +..++|+|+.+- ..+. .+.+.
T Consensus 13 ~~~lAa~l~~la~----~~~g~~vlDP~CGSGtilIEAa~-~~~---~~~~~G~Did~~~v~~A~~N~~~~g~~~~i~~~ 84 (171)
T pfam01170 13 KATLARAMVNLAG----WKPGDPLLDPFCGSGTILIEAAL-MGA---NVALYGSDIDRRMVRGARINAEAAGVGDKIEFV 84 (171)
T ss_pred CHHHHHHHHHHHC----CCCCCEEEECCCCCCHHHHHHHH-HHC---CCCCEEEECCHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 8999999999858----99999788689987899999999-613---589536758799999999999982899846999
Q ss_pred ECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 01122079999999731388748975320211022210157889899988987641148
Q gi|254780313|r 116 KFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLN 174 (227)
Q Consensus 116 ~gDi~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk 174 (227)
++|+++.. ...+.+|+|++|. . -|.+.-++....+|....+..+.++++
T Consensus 85 ~~D~~~l~-------~~~~~~d~Iv~nP--P-YG~r~~~~~~~~~ly~~~~~~~~~~~~ 133 (171)
T pfam01170 85 QADAADLP-------LLNGSVDTIVTDP--P-YGIRIGSKGALEKLYPAFLDEAKRVLR 133 (171)
T ss_pred ECCHHHCC-------CCCCCCEEEEECC--C-CCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 76665387-------9878831899889--8-201136545699999999999998689
No 91
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase; InterPro: IPR010251 Chlorophyll and bacteriochlorophyll are essential photosynthetic pigments involved in oxygenic and non-oxygenic photosythesis respectively. They are both synthesised from protoporphyrin IX in complex pathways which share many common steps. The second committed step in both pathways is the methylation of magnesium protoporphyrin IX, catalysed by magnesium protoporphyrin O-methyltransferase with S-adenosyl methionine (SAM) as the methyl donor , , .Sequence alignments suggest that the protein contains the characteristic seven-stranded beta-sheet fold found in other SAM-dependent methyltransferases. This entry represents magnesium protoporphyrin O-methyltransferase from cyanobacteria and plants, where it is known as ChlM, and from other photosynthetic bacteria, where it is known as BchM.; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process.
Probab=97.31 E-value=0.00046 Score=45.90 Aligned_cols=86 Identities=30% Similarity=0.336 Sum_probs=57.8
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC------------C
Q ss_conf 9999881844799999999986458313796788850455306899999706878832786411213------------3
Q gi|254780313|r 39 VQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD------------M 106 (227)
Q Consensus 39 ~~~Ak~~gyrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~------------~ 106 (227)
+++-=++| |.--.=|+++.-.+-+.+ .|.+|||=||+-|=.|.-.++ .+..|.||||.+ -
T Consensus 28 ~r~~vR~G-r~~~~~~~l~wL~~d~~l-~G~~vlDAGCGtGllsi~LAk------~GA~V~A~DIS~~mv~~A~~r~~~~ 99 (224)
T TIGR02021 28 VRQTVREG-RAAMREKLLEWLPKDRSL-KGKKVLDAGCGTGLLSIELAK------RGAIVKAVDISEQMVELARERAEKE 99 (224)
T ss_pred HHHHHHHH-HHHHHHHHHHHCCCCCCC-CCCEEEECCCCCCHHHHHHHH------CCCEEEEEHHHHHHHHHHHHHCCCC
T ss_conf 89999976-999999999854678898-767777558893154498884------7986866237689999998621002
Q ss_pred CCCCC-CEEEECCCCHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 34698-178301122079999999731388748975
Q gi|254780313|r 107 EPILG-VKFFKFDFLDLDSWEFIRQAIGGNPDLVLS 141 (227)
Q Consensus 107 ~~i~g-v~~~~gDi~~~~~~~~i~~~l~~~~DlVlS 141 (227)
.+-.| +.|-.+|+... ..|+||.|+|
T Consensus 100 ~~~~nl~~FeV~Dl~s~---------~~G~fD~VV~ 126 (224)
T TIGR02021 100 DEAGNLVEFEVNDLESL---------ELGKFDAVVA 126 (224)
T ss_pred CCCCCCCEEEECCHHHH---------CCCCCCEEEE
T ss_conf 10167003545304441---------3898555675
No 92
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=97.29 E-value=0.0009 Score=44.10 Aligned_cols=93 Identities=22% Similarity=0.245 Sum_probs=64.2
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------C--CCCCCCEEEECCCCHHHHHHHHHHHCC
Q ss_conf 13796788850455306899999706878832786411213---------3--346981783011220799999997313
Q gi|254780313|r 65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------M--EPILGVKFFKFDFLDLDSWEFIRQAIG 133 (227)
Q Consensus 65 ~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~--~~i~gv~~~~gDi~~~~~~~~i~~~l~ 133 (227)
++|+++||++||+.|--+-+++++++ +|++||..+ + ..+.||.++.||-.+--. -.
T Consensus 76 l~~~~~VLeIGtGsGY~tAlLa~l~~------~V~siE~~~~l~~~a~~~l~~~~~~nv~~~~gdg~~g~~-------~~ 142 (213)
T PRK00312 76 LKPGDRVLEIGTGSGYQAAVLAHLVE------RVFSVERIKTLQWQAKRRLKQLGLHNVSVRHGDGWKGWP-------AY 142 (213)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHCC------CEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC-------CC
T ss_conf 68997599965986099999998629------289994289999999999998499876999688766787-------66
Q ss_pred CCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCC
Q ss_conf 887489753202110222101578898999889876411487746999930599
Q gi|254780313|r 134 GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGG 187 (227)
Q Consensus 134 ~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~ 187 (227)
++||.|+..+|... +-+ --...|++||.+|+=+=.+.
T Consensus 143 ~pfD~Iii~~a~~~-----~P~------------~l~~qL~~gGrLV~Pig~~~ 179 (213)
T PRK00312 143 APFDRILVTAAAPE-----IPR------------ALLDQLAEGGILVAPIGPGE 179 (213)
T ss_pred CCCCEEEEEECCHH-----HHH------------HHHHHCCCCCEEEEEECCCC
T ss_conf 97248999843412-----259------------99984532979999980499
No 93
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=97.27 E-value=0.012 Score=37.12 Aligned_cols=108 Identities=22% Similarity=0.274 Sum_probs=72.4
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC------------CCCCCCCEEEECCCCHHHHHHHHHHHC
Q ss_conf 13796788850455306899999706878832786411213------------334698178301122079999999731
Q gi|254780313|r 65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD------------MEPILGVKFFKFDFLDLDSWEFIRQAI 132 (227)
Q Consensus 65 ~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~------------~~~i~gv~~~~gDi~~~~~~~~i~~~l 132 (227)
++||+.++|+||+-|+-+--++ ++++ .++|+|||-.+ .. ++|+..+.||- +++.. .+
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a-~~~p---~~~v~AIe~~~~a~~~~~~N~~~fg-~~n~~vv~g~A--p~~L~----~~ 100 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWA-LAGP---SGRVIAIERDEEALELIERNAARFG-VDNLEVVEGDA--PEALP----DL 100 (187)
T ss_pred CCCCCEEEEECCCCCHHHHHHH-HHCC---CCEEEEEECCHHHHHHHHHHHHHHC-CCCEEEEECCC--HHHHC----CC
T ss_conf 8999989995788668999999-7398---8559999258889999999999849-99679995464--57636----99
Q ss_pred CCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHH
Q ss_conf 3887489753202110222101578898999889876411487746999930599989999999862
Q gi|254780313|r 133 GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199 (227)
Q Consensus 133 ~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~~~ 199 (227)
. .+|.|.=-+ -..+ ...|+.+...|++||.+|+-.-.=+.....+..++..
T Consensus 101 ~-~~daiFIGG------g~~i---------~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~ 151 (187)
T COG2242 101 P-SPDAIFIGG------GGNI---------EEILEAAWERLKPGGRLVANAITLETLAKALEALEQL 151 (187)
T ss_pred C-CCCEEEECC------CCCH---------HHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHC
T ss_conf 9-999999879------8777---------8999999997186876999860088899999999972
No 94
>pfam03848 TehB Tellurite resistance protein TehB.
Probab=97.20 E-value=0.0032 Score=40.65 Aligned_cols=120 Identities=22% Similarity=0.219 Sum_probs=71.4
Q ss_pred CCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC-----------CCCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf 83137967888504553068999997068788327864112133-----------3469817830112207999999973
Q gi|254780313|r 63 QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM-----------EPILGVKFFKFDFLDLDSWEFIRQA 131 (227)
Q Consensus 63 ~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~-----------~~i~gv~~~~gDi~~~~~~~~i~~~ 131 (227)
+.++| .++|||||+.|-=+-|.++. +-.|.|||+.+. +.+ .+++.+-||.+..
T Consensus 27 ~~i~p-gk~LDlgcG~GRNslyLa~~------G~~VtavD~n~~aL~~l~~ia~~e~l-~i~~~~~Din~~~-------- 90 (192)
T pfam03848 27 KTVKP-GKALDLGCGQGRNSLFLSLL------GYDVTAVDHNENSIANLQDIKEKENL-DIPTALYDINSAS-------- 90 (192)
T ss_pred HHCCC-CCEEEECCCCCHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHHCCC-CCEEEEECCCCCC--------
T ss_conf 63799-74666047897318999868------99179997999999999999997099-7526873155568--------
Q ss_pred CCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEC-CCC------HH-HH-HHHHHHHCCE
Q ss_conf 138874897532021102221015788989998898764114877469999305-999------89-99-9999862584
Q gi|254780313|r 132 IGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ-GGT------TN-DI-LCLLKKHFQK 202 (227)
Q Consensus 132 l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~-G~~------~~-~l-~~~l~~~F~~ 202 (227)
+.+.+|+|+|-... ...+..+.- ..+.=.....+|||..++-.+. ..+ +. .| -..|+.+|+.
T Consensus 91 ~~e~YD~IisTVvf-----mFL~~~~ip----~iI~~mq~~T~pGGynlIv~am~t~d~pc~~~f~ftfk~gEL~~yy~~ 161 (192)
T pfam03848 91 IDENYDFILSTVVL-----MFLQAERIP----AIIANMQEHTNVGGYNLIVAAMSTADYPCTVPFSFTFKEGELKRYYQD 161 (192)
T ss_pred CCCCCCEEEEEEEE-----EECCHHHHH----HHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCC
T ss_conf 76776879888877-----731867877----999999985289988999976145537899898877880189997389
Q ss_pred EEEEC
Q ss_conf 69976
Q gi|254780313|r 203 VIHVK 207 (227)
Q Consensus 203 V~~~K 207 (227)
-.++|
T Consensus 162 Weilk 166 (192)
T pfam03848 162 WELLK 166 (192)
T ss_pred CEEEE
T ss_conf 87998
No 95
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.15 E-value=0.0084 Score=38.01 Aligned_cols=117 Identities=25% Similarity=0.369 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CCCCC-CCEEEECC
Q ss_conf 799999999986458313796788850455306899999706878832786411213---------33469-81783011
Q gi|254780313|r 49 ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------MEPIL-GVKFFKFD 118 (227)
Q Consensus 49 sRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~~i~-gv~~~~gD 118 (227)
+=||+=|..+.-..+| .|.+|+||||+-|-.+ +++...|+ .+|+|||+.+ .+.+. +|.|+.+|
T Consensus 29 ~~Aa~il~~a~~~g~l--~g~~V~DlG~GTG~La-~ga~~lGa----~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~d 101 (198)
T COG2263 29 PLAAYILWVAYLRGDL--EGKTVLDLGAGTGILA-IGAALLGA----SRVLAVDIDPEALEIARANAEELLGDVEFVVAD 101 (198)
T ss_pred HHHHHHHHHHHHCCCC--CCCEEEECCCCCCHHH-HHHHHCCC----CEEEEEECCHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 8999999999873884--7888888278847889-99986297----179999369899999998888608846999821
Q ss_pred CCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHH
Q ss_conf 220799999997313887489753202110222101578898999889876411487746999930599989999999
Q gi|254780313|r 119 FLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196 (227)
Q Consensus 119 i~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l 196 (227)
+.+. .+++|+|+-+ |.. |.+ .-| .-..-.+.||+++ -|+....-....+|+...
T Consensus 102 v~~~----------~~~~dtvimN--PPF-G~~-~rh-aDr~Fl~~Ale~s---------~vVYsiH~a~~~~f~~~~ 155 (198)
T COG2263 102 VSDF----------RGKFDTVIMN--PPF-GSQ-RRH-ADRPFLLKALEIS---------DVVYSIHKAGSRDFVEKF 155 (198)
T ss_pred HHHC----------CCCCCEEEEC--CCC-CCC-CCC-CCHHHHHHHHHHH---------HEEEEEECCCCHHHHHHH
T ss_conf 0114----------7766669978--997-322-136-8889999999740---------147874016607999999
No 96
>pfam06016 Reovirus_L2 Reovirus core-spike protein lambda-2 (L2). This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences. The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts.
Probab=97.13 E-value=0.0062 Score=38.86 Aligned_cols=142 Identities=23% Similarity=0.281 Sum_probs=95.3
Q ss_pred HCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCC----CCCCCC------CCEEEECCCCHHHHHHHHHH
Q ss_conf 45831379678885045530689999970687883278641121----333469------81783011220799999997
Q gi|254780313|r 61 KHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL----DMEPIL------GVKFFKFDFLDLDSWEFIRQ 130 (227)
Q Consensus 61 kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~----~~~~i~------gv~~~~gDi~~~~~~~~i~~ 130 (227)
-..+++.++++.=|||+-|.=. .....||. |++ |--|++ |-....|-|.|.+ +.
T Consensus 501 ~~~~l~~~~SmaYlGAS~~Ha~----------adqP~Ii~-pl~~GsipGvp~Pssi~QfGydVa~Gsi~Dl~-----~p 564 (1289)
T pfam06016 501 DHRVLPDSFSMAYLGASSTHAD----------ADQPLIIE-PLLSGSIPGVPIPSSVKQFGYDVANGSICDLE-----LP 564 (1289)
T ss_pred CCCCCCCCCEEEEEECCCCCCC----------CCCCEEEH-HHHCCCCCCCCCCHHHHHCCCEECCCEEEEEE-----CC
T ss_conf 8702578741799603555678----------89871415-76659988876750465506010365666321-----26
Q ss_pred HCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE-ECCCCH-HHHHHHHHHHCCEEEEECC
Q ss_conf 31388748975320211022210157889899988987641148774699993-059998-9999999862584699768
Q gi|254780313|r 131 AIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT-FQGGTT-NDILCLLKKHFQKVIHVKP 208 (227)
Q Consensus 131 ~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~-F~G~~~-~~l~~~l~~~F~~V~~~KP 208 (227)
...|.|-+|-||.---..|.-+ -..+..++.+.|..|...--+||.+|+|+ |-...+ ..+......+|...+++||
T Consensus 565 ~pTGtf~fVYsDvDQVedg~~D--l~assr~~~s~L~~~m~mTtaGGs~V~KvNFPT~~~W~~if~~~ap~~tslhl~KP 642 (1289)
T pfam06016 565 LPTGTFFFVYSDVDQVEDGGSD--LDASSRAACSQLDMAMKMTTAGGSLVVKVNFPTRAVWTQIFSTIAPYATSLHLMKP 642 (1289)
T ss_pred CCCCCEEEEEECHHHHHCCCCC--CCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 8876269998233566517877--40355789999877885403784489995588489999999763555114556420
Q ss_pred CCCCCCCCEEEEEE
Q ss_conf 66575582498983
Q gi|254780313|r 209 VASRAESVEMFLLA 222 (227)
Q Consensus 209 ~aSR~~S~E~Ylv~ 222 (227)
--. .|.|+|+|-
T Consensus 643 ~v~--Nn~Evf~vf 654 (1289)
T pfam06016 643 LVV--NNVELFLLF 654 (1289)
T ss_pred EEE--CCEEEEEEE
T ss_conf 344--553799998
No 97
>PRK00050 mraW S-adenosyl-methyltransferase MraW; Provisional
Probab=97.13 E-value=0.025 Score=34.99 Aligned_cols=82 Identities=23% Similarity=0.288 Sum_probs=57.1
Q ss_pred HHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC---------CC-CCCCEEEECCCCHHHH
Q ss_conf 9999864583137967888504553068999997068788327864112133---------34-6981783011220799
Q gi|254780313|r 55 LLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM---------EP-ILGVKFFKFDFLDLDS 124 (227)
Q Consensus 55 L~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~---------~~-i~gv~~~~gDi~~~~~ 124 (227)
|.|+.+-... .|+..+||.-.+-||-|+.+.+..++ +|+|+|+|..+- ++ -..+.+++++|-+...
T Consensus 12 l~Evl~~L~~-~~~g~yvD~T~G~GGHS~~iL~~l~~---~~~li~iDrD~~ai~~a~~~l~~~~~r~~~~~~nF~~l~~ 87 (309)
T PRK00050 12 LDEVVDGLAI-KPDGIYVDGTFGRGGHSRAILSQLGP---GGRLIAIDRDPQAIAAAKERLDPFGGRFTIVHGNFSDLAE 87 (309)
T ss_pred HHHHHHHCCC-CCCCEEEEECCCCCHHHHHHHHHCCC---CCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCHHHHHH
T ss_conf 8999983682-89999999388983999999972799---9889999898899999999865258828999277988999
Q ss_pred HHHHHHHCCCCCCEEEECCC
Q ss_conf 99999731388748975320
Q gi|254780313|r 125 WEFIRQAIGGNPDLVLSDMA 144 (227)
Q Consensus 125 ~~~i~~~l~~~~DlVlSDma 144 (227)
. + ... +++|-|+-|.+
T Consensus 88 ~--l-~~~-~~vdgil~DLG 103 (309)
T PRK00050 88 Y--L-AEV-GKVDGILLDLG 103 (309)
T ss_pred H--H-HHC-CCCCEEEEEEE
T ss_conf 9--9-863-88778999722
No 98
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.12 E-value=0.026 Score=34.93 Aligned_cols=84 Identities=18% Similarity=0.093 Sum_probs=56.4
Q ss_pred HHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CCC-CCCCEEEECCCCHHHH
Q ss_conf 999986458313796788850455306899999706878832786411213---------334-6981783011220799
Q gi|254780313|r 55 LLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------MEP-ILGVKFFKFDFLDLDS 124 (227)
Q Consensus 55 L~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~~-i~gv~~~~gDi~~~~~ 124 (227)
|.|..+-+.+ +|+...||.-.+-||-|+.+.+..+. .++++|+|..| ..+ -..++++++.|-+...
T Consensus 12 l~E~i~~L~~-~~~giyiD~TlG~GGHS~~iL~~l~~---~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l~~ 87 (314)
T COG0275 12 LNEVVELLAP-KPDGIYIDGTLGAGGHSRAILEKLPD---LGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANLAE 87 (314)
T ss_pred HHHHHHHCCC-CCCCEEEEECCCCCHHHHHHHHHCCC---CCEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHH
T ss_conf 9999985264-89947998237774768999985898---8708997689899999999853037848999576878998
Q ss_pred HHHHHHHCCCCCCEEEECCC
Q ss_conf 99999731388748975320
Q gi|254780313|r 125 WEFIRQAIGGNPDLVLSDMA 144 (227)
Q Consensus 125 ~~~i~~~l~~~~DlVlSDma 144 (227)
... ..-.+++|=|+-|.+
T Consensus 88 ~l~--~~~i~~vDGiL~DLG 105 (314)
T COG0275 88 ALK--ELGIGKVDGILLDLG 105 (314)
T ss_pred HHH--HCCCCCEEEEEEECC
T ss_conf 887--638872227999536
No 99
>PRK06202 hypothetical protein; Provisional
Probab=97.10 E-value=0.0055 Score=39.16 Aligned_cols=67 Identities=30% Similarity=0.242 Sum_probs=45.0
Q ss_pred CCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC--------CCCCCCE--EEECCCCHHHHHHHHHHHCCCCCC
Q ss_conf 967888504553068999997068788327864112133--------3469817--830112207999999973138874
Q gi|254780313|r 68 NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM--------EPILGVK--FFKFDFLDLDSWEFIRQAIGGNPD 137 (227)
Q Consensus 68 g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~--------~~i~gv~--~~~gDi~~~~~~~~i~~~l~~~~D 137 (227)
--+|||+||+.|.-+..+++.....|....|+|||+.|- ..-+++. +...|... ..+..+|
T Consensus 62 ~~~VLDlGcG~Gdl~~~lar~a~~~g~~l~v~GiD~~~~ai~~Ar~~a~~~~~~~~~~~~d~l~---------~~~~~~D 132 (233)
T PRK06202 62 PLTVLDLGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAIRFARANARRRGVTFRFAVSDELV---------AEGERFD 132 (233)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCCCEEEEEHHHHC---------CCCCCCC
T ss_conf 7289983478757999999999755996389997798899999987340369836997343202---------4578875
Q ss_pred EEEECC
Q ss_conf 897532
Q gi|254780313|r 138 LVLSDM 143 (227)
Q Consensus 138 lVlSDm 143 (227)
+|+|-.
T Consensus 133 vV~~sl 138 (233)
T PRK06202 133 VVYSNH 138 (233)
T ss_pred EEEHHH
T ss_conf 760324
No 100
>KOG1499 consensus
Probab=97.08 E-value=0.0016 Score=42.60 Aligned_cols=105 Identities=22% Similarity=0.328 Sum_probs=71.9
Q ss_pred HHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCC----------CCC-CEEEECCCC
Q ss_conf 999999986458313796788850455306899999706878832786411213334----------698-178301122
Q gi|254780313|r 52 AYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP----------ILG-VKFFKFDFL 120 (227)
Q Consensus 52 afKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~----------i~g-v~~~~gDi~ 120 (227)
||--.-++.++ + =.+.+|||.||+-|=-|+.+++-- .-+|+|||-..|.. ..+ +++++|.+.
T Consensus 47 aYr~~i~~n~~-l-f~dK~VlDVGcGtGILS~F~akAG-----A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvE 119 (346)
T KOG1499 47 AYRNAILQNKH-L-FKDKTVLDVGCGTGILSMFAAKAG-----ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVE 119 (346)
T ss_pred HHHHHHHCCHH-H-CCCCEEEECCCCCCHHHHHHHHHC-----CCEEEEEECHHHHHHHHHHHHHCCCCCEEEEEECCEE
T ss_conf 87887751643-3-079789975788128899988737-----5339999626899999999985686605999503057
Q ss_pred HHHHHHHHHHHCCCCCCEEEEC-CCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 0799999997313887489753-2021102221015788989998898764114877469
Q gi|254780313|r 121 DLDSWEFIRQAIGGNPDLVLSD-MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179 (227)
Q Consensus 121 ~~~~~~~i~~~l~~~~DlVlSD-mapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~f 179 (227)
+.+.. -.++|+|+|. | |.. .....+...+|..=.++|++||..
T Consensus 120 di~LP-------~eKVDiIvSEWM-----Gy~----Ll~EsMldsVl~ARdkwL~~~G~i 163 (346)
T KOG1499 120 DIELP-------VEKVDIIVSEWM-----GYF----LLYESMLDSVLYARDKWLKEGGLI 163 (346)
T ss_pred EEECC-------CCCEEEEEEHHH-----HHH----HHHHHHHHHHHHHHHHCCCCCCEE
T ss_conf 87647-------554029963012-----478----777656664553333004779557
No 101
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.06 E-value=0.0045 Score=39.70 Aligned_cols=120 Identities=18% Similarity=0.236 Sum_probs=78.3
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEEC--------CCCC-CCCCCCEEEECCCCHHHHHHHHHHHCCCC
Q ss_conf 13796788850455306899999706878832786411--------2133-34698178301122079999999731388
Q gi|254780313|r 65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID--------ILDM-EPILGVKFFKFDFLDLDSWEFIRQAIGGN 135 (227)
Q Consensus 65 ~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVD--------l~~~-~~i~gv~~~~gDi~~~~~~~~i~~~l~~~ 135 (227)
+++|..||=||||-|--.-.+++.++ .|+|.||. |+++ +.-+|+.=+-+|...++....+ -..
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~----~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~----Ve~ 145 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVG----EGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHL----VEK 145 (231)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHCCC----CCCEEEEEECCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHH----CCC
T ss_conf 69998789950367985767776047----8708999964446999999987478740020136883776531----245
Q ss_pred CCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC--EEEEEEEC---CCCHHH-----HHHHHHHHCCEEEE
Q ss_conf 748975320211022210157889899988987641148774--69999305---999899-----99999862584699
Q gi|254780313|r 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG--DFLVKTFQ---GGTTND-----ILCLLKKHFQKVIH 205 (227)
Q Consensus 136 ~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG--~fV~K~F~---G~~~~~-----l~~~l~~~F~~V~~ 205 (227)
+|+|..|.|. -||+.. +..=|.-+|++|| -.++|.-. ..+-.+ +.++....|+-...
T Consensus 146 VDviy~DVAQ-------p~Qa~I------~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e~ 212 (231)
T COG1889 146 VDVIYQDVAQ-------PNQAEI------LADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEILEV 212 (231)
T ss_pred CCEEEEECCC-------CHHHHH------HHHHHHHHCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 4389983688-------107899------998899732169739999985123045898999999999998569504677
No 102
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.02 E-value=0.0011 Score=43.51 Aligned_cols=95 Identities=20% Similarity=0.246 Sum_probs=64.4
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC---------C--CCCC-CEEEECCCCHHHHHHHHHHHC
Q ss_conf 137967888504553068999997068788327864112133---------3--4698-178301122079999999731
Q gi|254780313|r 65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM---------E--PILG-VKFFKFDFLDLDSWEFIRQAI 132 (227)
Q Consensus 65 ~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~---------~--~i~g-v~~~~gDi~~~~~~~~i~~~l 132 (227)
++|+++|||+||+.|--+-+++++++. .|+|++||+.+- + .+.| +.+..||...-- . -
T Consensus 70 ~~~~~~VLeIGtGsGY~tAlla~l~~~---~g~V~siE~~~~L~~~A~~~l~~l~~~n~v~v~~gdg~~G~-----~--~ 139 (205)
T PRK13944 70 PRPGMKILEVGTGSGYQAAVCAEAIER---RGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGL-----E--K 139 (205)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHCC---CCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCC-----C--C
T ss_conf 899998999789851999999998374---77179995369999999999998598633067976556577-----4--3
Q ss_pred CCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECC
Q ss_conf 388748975320211022210157889899988987641148774699993059
Q gi|254780313|r 133 GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG 186 (227)
Q Consensus 133 ~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G 186 (227)
.++||.|+..+|+.. +.+ --...|++||.+|+=+=++
T Consensus 140 ~apfD~Iiv~aa~~~-----iP~------------~l~~QL~~gGrLV~Pvg~~ 176 (205)
T PRK13944 140 HAPFDAIIVTAAAST-----IPS------------ALVRQLKDGGVLVIPVEEG 176 (205)
T ss_pred CCCCCEEEEEEECCC-----CCH------------HHHHHCCCCCEEEEEECCC
T ss_conf 498048999850776-----899------------9998548797999998789
No 103
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=97.01 E-value=0.0068 Score=38.57 Aligned_cols=89 Identities=21% Similarity=0.226 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC-----------CCCCCCCEEEEC
Q ss_conf 799999999986458313796788850455306899999706878832786411213-----------334698178301
Q gi|254780313|r 49 ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-----------MEPILGVKFFKF 117 (227)
Q Consensus 49 sRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~-----------~~~i~gv~~~~g 117 (227)
...+-+|.+.-.++-=..+...||||-|+=|.++..+++.. ..|+||++.+ ...+.|+.|+.+
T Consensus 215 ~~~~~~L~~~~~~~~~~~~~~~vlDlycG~G~~sl~lA~~~------~~V~gvE~~~~av~~A~~na~~ngi~nv~f~~~ 288 (375)
T PRK03522 215 PAVAAQLYATARDWVRELPPKSMWDLFCGVGGFGLHCATPD------MQLTGIEISAEAIACAKQSAAELGLTNVQFQAL 288 (375)
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHCC------CEEEEEEECHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 99999999999998631589789996578538889876417------889999845999999999999869987699973
Q ss_pred CCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCC
Q ss_conf 1220799999997313887489753202110222
Q gi|254780313|r 118 DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHR 151 (227)
Q Consensus 118 Di~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~ 151 (227)
|..+. .......+|+|+-| |.-+|..
T Consensus 289 d~~~~------~~~~~~~~d~vvvD--PPR~Gl~ 314 (375)
T PRK03522 289 DSTQF------ATAQGEVPELVLVN--PPRRGIG 314 (375)
T ss_pred CHHHH------HHHCCCCCCEEEEC--CCCCCCH
T ss_conf 77888------76345689789989--9977751
No 104
>PRK06922 hypothetical protein; Provisional
Probab=97.00 E-value=0.0069 Score=38.53 Aligned_cols=103 Identities=20% Similarity=0.312 Sum_probs=61.9
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC--CCCC--------CCCEEEECCCCHHHHHHHHHHHCCCC
Q ss_conf 3796788850455306899999706878832786411213--3346--------98178301122079999999731388
Q gi|254780313|r 66 QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD--MEPI--------LGVKFFKFDFLDLDSWEFIRQAIGGN 135 (227)
Q Consensus 66 k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~--~~~i--------~gv~~~~gDi~~~~~~~~i~~~l~~~ 135 (227)
-.|.++||+|++-| |..+.+...-.+..|+|+||.. ++.+ ..=..++||..+... .+-.+.
T Consensus 419 i~G~~ivdiG~GGG----VMldli~E~~p~~~i~GIDiS~NVIe~L~kkK~~e~ksW~V~~gDAL~l~d-----~f~~eS 489 (679)
T PRK06922 419 IKGDTIVDVGAGGG----VMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSS-----SFEKES 489 (679)
T ss_pred CCCCEEEEECCCCC----HHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEECCCCCCCHH-----HCCCCC
T ss_conf 14767998669962----148766765899861466660889999988777548984232143036154-----347566
Q ss_pred CCEEEECCCH-------HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 7489753202-------1102221015788989998898764114877469999
Q gi|254780313|r 136 PDLVLSDMAY-------PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK 182 (227)
Q Consensus 136 ~DlVlSDmap-------n~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K 182 (227)
+|.|++---. .+-|.+. .-+....+|.-|..+|+|||-.++.
T Consensus 490 vdTiv~sSIlHElfSYie~dGkkf-----N~~vi~~~l~Saf~vLkpGGRiIIR 538 (679)
T PRK06922 490 VDTIVYSSILHELFSYIEYEGKKF-----NHEVIKKGLQSAYEVLKPGGRIIIR 538 (679)
T ss_pred CCEEEEHHHHHHHHHHCCCCCCCC-----CHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 646874277888886345667134-----7999999999999872888649994
No 105
>pfam02384 N6_Mtase N-6 DNA Methylase. Restriction-modification (R-M) systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The R-M system is a complex containing three polypeptides: M (this family), S (pfam01420), and R. This family consists of N-6 adenine-specific DNA methylase EC:2.1.1.72 from Type I and Type IC restriction systems. These methylases have the same sequence specificity as their corresponding restriction enzymes.
Probab=97.00 E-value=0.0035 Score=40.39 Aligned_cols=141 Identities=18% Similarity=0.189 Sum_probs=79.2
Q ss_pred CHHHHHHHHHHHHHHCCCC--CCCCEEEEEECCCCHHHHHHHHHHCC---CCCCEEEEEECCCCC-----------CCCC
Q ss_conf 4479999999998645831--37967888504553068999997068---788327864112133-----------3469
Q gi|254780313|r 47 WRARSAYKLLQINEKHQIL--QSNRRIVDLGSSPGSWSQVAARITGS---NANNTRVVAIDILDM-----------EPIL 110 (227)
Q Consensus 47 yrsRaafKL~eId~kf~l~--k~g~~VlDLGaaPGgWsQva~~~~~~---~~~~~~VigVDl~~~-----------~~i~ 110 (227)
|--|..=+|+= .|+ +++.+|+|-+|+-||++--+.+.+.. ......+.|.|+.+- .-++
T Consensus 29 fTPr~Vv~lmv-----~ll~p~~~~~V~DPacGtGgfLi~a~~~i~~~~~~~~~~~i~G~E~~~~~~~la~mNm~lhgi~ 103 (312)
T pfam02384 29 YTPREVSKLIV-----ELLEPKPGESIYDPACGSGGFLIQADKFVKSHDGDTNDISIYGQELNPTTYRLARMNMILHGIE 103 (312)
T ss_pred CCCHHHHHHHH-----HHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCC
T ss_conf 88789999999-----9828999998821687733789999999998437855655636889989999999999984798
Q ss_pred --CCEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHH---------------HHHHHHHHHHHHHHCC
Q ss_conf --81783011220799999997313887489753202110222101578---------------8989998898764114
Q gi|254780313|r 111 --GVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLR---------------TMSLCEAATFFALEML 173 (227)
Q Consensus 111 --gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~---------------~~~L~~~al~~A~~~L 173 (227)
......||-+..+.. .-..+||+|++. |..++.++.+... ..++ +-+..++..|
T Consensus 104 ~~~~~i~~gdsl~~~~~-----~~~~kfD~IlsN--PPFg~k~~~~~~~~~~~~~~~~~~~~~~~~e~--~Fiqh~l~~L 174 (312)
T pfam02384 104 YNDFGIRHGDTLLSPKF-----EEDKKFDVVVAN--PPFNQKWDANDNLENDPRFRAYGVPPKSNADF--AFLQHIIYHL 174 (312)
T ss_pred CCCCCCCCCCCCCCCCC-----CCCCCCCEEEEC--CCCCCCCCCCCCCCCCCCHHCCCCCCCCCHHH--HHHHHHHHHC
T ss_conf 87455214776557676-----654551189837--86466766543210272110368788874429--9999999856
Q ss_pred CCCCEEEEEE-----ECCCCHHHHHHHHHHHCC
Q ss_conf 8774699993-----059998999999986258
Q gi|254780313|r 174 NIGGDFLVKT-----FQGGTTNDILCLLKKHFQ 201 (227)
Q Consensus 174 k~gG~fV~K~-----F~G~~~~~l~~~l~~~F~ 201 (227)
++||...+=+ |.|.....+++.|-..+.
T Consensus 175 k~~GraaiVlp~g~Lf~~~~e~~iR~~lle~~~ 207 (312)
T pfam02384 175 SPNGRAAVVLPNGVLFRGGAEGDIRKALVEKDL 207 (312)
T ss_pred CCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 999769999558231046508899999997597
No 106
>pfam00891 Methyltransf_2 O-methyltransferase. This family includes a range of O-methyltransferases. These enzymes utilize S-adenosyl methionine.
Probab=96.99 E-value=0.034 Score=34.22 Aligned_cols=126 Identities=21% Similarity=0.235 Sum_probs=73.2
Q ss_pred CCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC----CCC
Q ss_conf 0899999998818447999999999864583137967888504553068999997068788327864112133----346
Q gi|254780313|r 34 INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM----EPI 109 (227)
Q Consensus 34 ~~D~y~~~Ak~~gyrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~----~~i 109 (227)
..||-....=.++-.+-+..-..++-+.+--+....+|||+|.+.|.++.-+++..+. -+++-.|+-.+ ..-
T Consensus 68 ~~~p~~~~~F~~aM~~~s~~~~~~~~~~~~d~~~~~~vvDvGGG~G~~~~~i~~~~P~----l~~~v~Dlp~v~~~a~~~ 143 (239)
T pfam00891 68 GADPEFNRVFNRAMAAHSRLVMKKILETAFDFSGLSSLVDVGGGTGALAAAIVRAYPH----IKGIVFDLPHVIADAPSA 143 (239)
T ss_pred HHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHCCC----CEEEEEECHHHHHHCCCC
T ss_conf 5199999999999988888889999987137667876899679818999999998899----838986468778627646
Q ss_pred CCCEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 9817830112207999999973138874897532021102221015788989998898764114877469999
Q gi|254780313|r 110 LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK 182 (227)
Q Consensus 110 ~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K 182 (227)
+++.++.||++++ ++ .+|+++-= ++--+|. | +-|..+|.-+...|+|||.+++=
T Consensus 144 ~rv~~~~gdff~~---------~P-~aD~y~l~---~vLH~w~-d-----~~~~~iL~~~~~al~~~grllI~ 197 (239)
T pfam00891 144 DRVEFVGGDFFES---------VP-EADAILLK---WVLHDWS-D-----EDCVKILKRCYEALPPGGKVIVV 197 (239)
T ss_pred CCEEEECCCCCCC---------CC-CCCEEEEE---HHHCCCC-H-----HHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 8548844877778---------88-85177640---1431599-9-----99999999999977999889999
No 107
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=96.98 E-value=0.0042 Score=39.88 Aligned_cols=105 Identities=21% Similarity=0.260 Sum_probs=63.3
Q ss_pred HHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC-----------CCCCCCEEEECCCCHHHHHHH
Q ss_conf 864583137967888504553068999997068788327864112133-----------346981783011220799999
Q gi|254780313|r 59 NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM-----------EPILGVKFFKFDFLDLDSWEF 127 (227)
Q Consensus 59 d~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~-----------~~i~gv~~~~gDi~~~~~~~~ 127 (227)
-+-...++|| ++|||||+-|-=+-|.+.. +--|.|+|+.+. +.+ ++....-||.+..
T Consensus 115 ~~a~~~i~pg-kaLDLGCG~GRNsLyLa~~------GfdVTA~D~N~~sl~~L~~ia~~E~L-~i~~~~yDIN~a~---- 182 (289)
T PRK12335 115 LEAAKTVKPG-KALDLGCGQGRNSLYLALL------GFDVTAVDINQASLENLQQIAEKENL-NIRAGSYDINSAS---- 182 (289)
T ss_pred HHHHHHCCCC-CEEEECCCCCCCHHHHHHC------CCCEEEEECCHHHHHHHHHHHHHCCC-CCCCEEECCCCCC----
T ss_conf 9987526887-4666047888227889757------98425886899999999999997198-8772575166666----
Q ss_pred HHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC-EEEEEEECCCC
Q ss_conf 99731388748975320211022210157889899988987641148774-69999305999
Q gi|254780313|r 128 IRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG-DFLVKTFQGGT 188 (227)
Q Consensus 128 i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG-~fV~K~F~G~~ 188 (227)
+.+.+|+|+|-.-. -..+..+.-+ .+.=....-.+|| |+++-..+..+
T Consensus 183 ----l~~~YDfI~STVV~-----mFL~~~~ip~----iI~nMQ~~T~~gGyNlIV~am~T~d 231 (289)
T PRK12335 183 ----LQEEYDFILSTVVL-----MFLNPERIPD----IIKNMQEHTNPGGYNLIVCAMDTED 231 (289)
T ss_pred ----CCCCCCEEEEEEEE-----EEECHHHHHH----HHHHHHHHCCCCCEEEEEEECCCCC
T ss_conf ----67776789996788-----6428778699----9999998447998689998714777
No 108
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=96.98 E-value=0.0012 Score=43.35 Aligned_cols=90 Identities=20% Similarity=0.237 Sum_probs=58.1
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC-----------CCCCCCCEEEECCCCHHHHHHHHHHHCC
Q ss_conf 13796788850455306899999706878832786411213-----------3346981783011220799999997313
Q gi|254780313|r 65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-----------MEPILGVKFFKFDFLDLDSWEFIRQAIG 133 (227)
Q Consensus 65 ~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~-----------~~~i~gv~~~~gDi~~~~~~~~i~~~l~ 133 (227)
++||++|||+|++.|-=+-+.+++++.. |.|++||+.+ -.-+.+|.++.||-..--. -.
T Consensus 73 l~pg~rVLEIGTGSGYqAAlLA~Lvg~~---G~V~TIE~~~~L~~~Ar~~L~~lG~~NV~vv~GDG~~G~p-------e~ 142 (317)
T PRK13943 73 LDKGMRVLEIGGGTGYNAAVMSRVVGEK---GLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVP-------EF 142 (317)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHCCC---CEEEEEEECHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC-------CC
T ss_conf 8999868996577438999999984878---7599998679999999999997799864999799888886-------67
Q ss_pred CCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 887489753202110222101578898999889876411487746999
Q gi|254780313|r 134 GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV 181 (227)
Q Consensus 134 ~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~ 181 (227)
.++|.|+--+|+ +++-++- ..-|++||.+|+
T Consensus 143 APYD~IIVTAaa-----~~IP~aL------------ldQLk~GGRLVi 173 (317)
T PRK13943 143 SPYDVIFVTVGV-----DEVPETW------------FTQLKEGGRVIV 173 (317)
T ss_pred CCCCEEEEEECC-----CCCCHHH------------HHHCCCCCEEEE
T ss_conf 997789998527-----6489999------------996185969999
No 109
>KOG1270 consensus
Probab=96.91 E-value=0.0036 Score=40.30 Aligned_cols=101 Identities=21% Similarity=0.333 Sum_probs=57.6
Q ss_pred HCCCCCCC------CEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC-----------CCCCCCC-EEEECCCCHH
Q ss_conf 45831379------6788850455306899999706878832786411213-----------3346981-7830112207
Q gi|254780313|r 61 KHQILQSN------RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-----------MEPILGV-KFFKFDFLDL 122 (227)
Q Consensus 61 kf~l~k~g------~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~-----------~~~i~gv-~~~~gDi~~~ 122 (227)
+.+.+.|+ ++|||.||+-|=-||-.++.. ..|.|||+-+ |.|+..- ..++-
T Consensus 77 ~v~~~~p~~k~~~g~~ilDvGCGgGLLSepLArlg------a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l----- 145 (282)
T KOG1270 77 RVNNHAPGSKPLLGMKILDVGCGGGLLSEPLARLG------AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRL----- 145 (282)
T ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHC------CEEEEECCHHHHHHHHHHHHHCCCHHCCCCCEEE-----
T ss_conf 04322887545578647872367550232357508------8568526559999999875104903305641463-----
Q ss_pred HHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf 9999999731388748975320211022210157889899988987641148774699993
Q gi|254780313|r 123 DSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT 183 (227)
Q Consensus 123 ~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~ 183 (227)
+......+-+.++||.|+|=+. +.|... -...+..+...|+|||.+++-.
T Consensus 146 ~~~~~~~E~~~~~fDaVvcsev--------leHV~d---p~~~l~~l~~~lkP~G~lfitt 195 (282)
T KOG1270 146 EYEDTDVEGLTGKFDAVVCSEV--------LEHVKD---PQEFLNCLSALLKPNGRLFITT 195 (282)
T ss_pred EHHHCCHHHCCCCCCEEEEHHH--------HHHHHC---HHHHHHHHHHHHCCCCCEEEEE
T ss_conf 0201533214565645441989--------998747---8999999999848898258641
No 110
>PRK13168 rumA 23S rRNA 5-methyluridine methyltransferase; Reviewed
Probab=96.81 E-value=0.0089 Score=37.84 Aligned_cols=75 Identities=24% Similarity=0.296 Sum_probs=55.7
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC-----------CCCCCCCEEEECCCCHHHHHHHHHHHCC
Q ss_conf 13796788850455306899999706878832786411213-----------3346981783011220799999997313
Q gi|254780313|r 65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-----------MEPILGVKFFKFDFLDLDSWEFIRQAIG 133 (227)
Q Consensus 65 ~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~-----------~~~i~gv~~~~gDi~~~~~~~~i~~~l~ 133 (227)
+.++..||||=|+=|.++..+++... .|+||+..+ ...+.|+.|+.+|+.+.-. ... ...
T Consensus 292 ~~~~~~VlDLYcGvGtfsl~LA~~~~------~V~gvE~~~~av~~A~~Na~~n~i~n~~f~~~d~~~~l~-~~~--~~~ 362 (440)
T PRK13168 292 PQPGDRVLDLFCGLGNFTLPLARQAA------EVVGVEGVPAMVERARENARRNGLDNVTFYHANLFEDFT-DQP--WAK 362 (440)
T ss_pred CCCCCEEEEEECCCCCCCHHHHHCCC------EEEEEECCHHHHHHHHHHHHHCCCCCCEEEECCHHHHHH-HHH--HHC
T ss_conf 67898899862385621111353067------688760579999999999997499987899746456635-578--637
Q ss_pred CCCCEEEECCCHHHCCC
Q ss_conf 88748975320211022
Q gi|254780313|r 134 GNPDLVLSDMAYPTIGH 150 (227)
Q Consensus 134 ~~~DlVlSDmapn~SG~ 150 (227)
.++|+|+-| |.-+|-
T Consensus 363 ~~~D~vi~D--PPR~G~ 377 (440)
T PRK13168 363 GGFDKVLLD--PPRAGA 377 (440)
T ss_pred CCCCEEEEC--CCCCCH
T ss_conf 999989999--885278
No 111
>pfam01596 Methyltransf_3 O-methyltransferase. Members of this family are O-methyltransferases. The family includes catechol o-methyltransferase, caffeoyl-CoA O-methyltransferase, and a family of bacterial O-methyltransferases that may be involved in antibiotic production.
Probab=96.80 E-value=0.03 Score=34.55 Aligned_cols=116 Identities=18% Similarity=0.177 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC-----------CCC-CCCEEEE
Q ss_conf 7999999999864583137967888504553068999997068788327864112133-----------346-9817830
Q gi|254780313|r 49 ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM-----------EPI-LGVKFFK 116 (227)
Q Consensus 49 sRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~-----------~~i-~gv~~~~ 116 (227)
+...=+|+.+--+- .+..+||++|.+-|-=+-..++-+++ +|+|+.+|+.+- ..+ ..+.++.
T Consensus 29 ~~~~g~~L~~l~~~---~~ak~iLEiGT~~GySal~lA~~l~~---~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~ 102 (204)
T pfam01596 29 SPEEGQFLSMLVKL---VGAKRTLEIGVFTGYSLLATALALPE---DGKITACDIDREAYEIGLPFIQKAGVADKIEFRV 102 (204)
T ss_pred CHHHHHHHHHHHHH---HCCCEEEEEECCCCHHHHHHHHHCCC---CCEEEEEEECHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 99999999999997---59878999834325999999984899---9689999804899999999999779874479998
Q ss_pred CCCCHHHHHHHHHHH-CCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE--EECC
Q ss_conf 112207999999973-138874897532021102221015788989998898764114877469999--3059
Q gi|254780313|r 117 FDFLDLDSWEFIRQA-IGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK--TFQG 186 (227)
Q Consensus 117 gDi~~~~~~~~i~~~-l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K--~F~G 186 (227)
||.. ++.+.+.+. -.+.||+|.-|+.. +++ ..-++.+.+.|++||.+|+= +|.|
T Consensus 103 gdA~--~~l~~l~~~~~~~~fD~vFiDadK--------~~Y------~~y~e~~~~lL~~gGiii~DNvL~~G 159 (204)
T pfam01596 103 GDAL--KTLEQLVEDKPLGEFDFAFVDADK--------SSY------PNYYERLLELVKVGGLIAIDNTLWFG 159 (204)
T ss_pred ECHH--HHHHHHHHCCCCCCCCEEEEECCH--------HHH------HHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 7499--999999844777764389981888--------777------99999999863698099994453468
No 112
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=96.79 E-value=0.05 Score=33.16 Aligned_cols=162 Identities=19% Similarity=0.216 Sum_probs=98.1
Q ss_pred HHHHHHCCCHHHHHHHHHC--------------CHHHHHHHHH---------HHHH-----------------HCCCCCC
Q ss_conf 9999640899999998818--------------4479999999---------9986-----------------4583137
Q gi|254780313|r 28 DWLNRHINDPYVQRAQLEG--------------WRARSAYKLL---------QINE-----------------KHQILQS 67 (227)
Q Consensus 28 ~W~~r~~~D~y~~~Ak~~g--------------yrsRaafKL~---------eId~-----------------kf~l~k~ 67 (227)
-|..|-..|++-+.++.+| -.+-+.|||. |||- |-.+.++
T Consensus 53 ~~g~~~~~d~~~~~~~d~~~vY~~~~ge~~~~~i~~~~~yKLvPt~~G~PTiEIdGIrMhrt~~tdP~~Dt~~Kv~~V~~ 132 (287)
T COG2521 53 PEGSRIKLDELPKILEDRGEVYFLKGGEVYKASIAAEHYYKLVPTPPGAPTIEIDGIRMHRTKGTDPLEDTLAKVELVKV 132 (287)
T ss_pred CCCCEEEEHHHHHHHCCCCEEEEEECCEEEEEEECCCCCEEEECCCCCCCEEEECCEEEECCCCCCCHHHHHHHHHEECC
T ss_conf 66547874022333235514999968849988720586179825799997388815797513676807888756624443
Q ss_pred --CCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEEC----------CCCCCC-C--CCCEEEECCCCHHHHHHHHHHHC
Q ss_conf --96788850455306899999706878832786411----------213334-6--98178301122079999999731
Q gi|254780313|r 68 --NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID----------ILDMEP-I--LGVKFFKFDFLDLDSWEFIRQAI 132 (227)
Q Consensus 68 --g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVD----------l~~~~~-i--~gv~~~~gDi~~~~~~~~i~~~l 132 (227)
|.+|||.|.+=|-..--|.++ | ...|+.|. |+|..+ + .++..+.||.. +.+..+-
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~r-G----A~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~-----e~V~~~~ 202 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALER-G----AIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAY-----EVVKDFD 202 (287)
T ss_pred CCCCEEEEECCCCCHHHHHHHHC-C----CCEEEEEEECCCEEEEECCCCCCCCCCCCCCEEECCCHH-----HHHHCCC
T ss_conf 66878443246713899999875-8----748999960877277413588984202003178616599-----9974188
Q ss_pred CCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEE------EEECCCCHH-HHHHHHHHH-CCEEE
Q ss_conf 3887489753202110222101578898999889876411487746999------930599989-999999862-58469
Q gi|254780313|r 133 GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV------KTFQGGTTN-DILCLLKKH-FQKVI 204 (227)
Q Consensus 133 ~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~------K~F~G~~~~-~l~~~l~~~-F~~V~ 204 (227)
+..||+|++| -|..|--. +.-+.++- .-..++|++||-+.- |-++|.+.. .+...|++. |..|.
T Consensus 203 D~sfDaIiHD-PPRfS~Ag---eLYseefY----~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~ 274 (287)
T COG2521 203 DESFDAIIHD-PPRFSLAG---ELYSEEFY----RELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVK 274 (287)
T ss_pred CCCCCEEEEC-CCCCCHHH---HHHHHHHH----HHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCEEEE
T ss_conf 6530168607-97331023---57689999----9999970769807997279874024677147899999861734443
Q ss_pred EEC
Q ss_conf 976
Q gi|254780313|r 205 HVK 207 (227)
Q Consensus 205 ~~K 207 (227)
..+
T Consensus 275 ~~~ 277 (287)
T COG2521 275 KVR 277 (287)
T ss_pred EEH
T ss_conf 232
No 113
>PRK00811 spermidine synthase; Provisional
Probab=96.75 E-value=0.032 Score=34.38 Aligned_cols=123 Identities=17% Similarity=0.254 Sum_probs=74.0
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC--C--------------CCCCCEEEECCCCHHHHHHHHHH
Q ss_conf 7967888504553068999997068788327864112133--3--------------46981783011220799999997
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM--E--------------PILGVKFFKFDFLDLDSWEFIRQ 130 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~--~--------------~i~gv~~~~gDi~~~~~~~~i~~ 130 (227)
.-.+||=+|.+-|| ++.+.+.... -.+|.-|||.+. + .-+.+..+-+| ..+.+.+
T Consensus 78 ~pk~VLIiGGGDGg---~~rE~lkh~~-v~~v~~VeiD~~Vi~~~~~~lp~~~~~~~~dprv~~~~~D-----g~~fv~~ 148 (283)
T PRK00811 78 NPKKVLIIGGGDGG---TLREVLKHPS-VEKITMVEIDERVVEMSRKYLPEISGGAWDDPRVELVIGD-----GVKFVRE 148 (283)
T ss_pred CCCEEEEECCCCHH---HHHHHHCCCC-CCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEHHH-----HHHHHHH
T ss_conf 97748995687479---9999842788-5679999468999999999838863133029715998278-----9999984
Q ss_pred HCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHH-HHHHHHHCCCCCCEEEEEE----ECCCCHHHHHHHHHHHCCEEEE
Q ss_conf 3138874897532021102221015788989998-8987641148774699993----0599989999999862584699
Q gi|254780313|r 131 AIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEA-ATFFALEMLNIGGDFLVKT----FQGGTTNDILCLLKKHFQKVIH 205 (227)
Q Consensus 131 ~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~-al~~A~~~Lk~gG~fV~K~----F~G~~~~~l~~~l~~~F~~V~~ 205 (227)
...++|+|+.|. ++-.|. ...|... =...+.+.|+++|.||+.. |+...+..+.+.++..|..|..
T Consensus 149 -~~~~yDvII~D~-tDP~gp-------a~~Lft~~Fy~~~~~~L~~~Gi~v~Q~~sp~~~~~~~~~~~~~l~~~F~~v~~ 219 (283)
T PRK00811 149 -TENSFDVIIVDS-TDPVGP-------AEGLFTKEFYENCKRALKEGGIFVAQSESPFLQADEIKDLHKKLREVFPIVRP 219 (283)
T ss_pred -CCCCCCEEEEEC-CCCCCH-------HHHHCCHHHHHHHHHHCCCCCEEEECCCCHHHCHHHHHHHHHHHHHHCCCEEE
T ss_conf -523554899808-998864-------45534599999999853999589992798320699999999999986886689
Q ss_pred EC
Q ss_conf 76
Q gi|254780313|r 206 VK 207 (227)
Q Consensus 206 ~K 207 (227)
+-
T Consensus 220 y~ 221 (283)
T PRK00811 220 YQ 221 (283)
T ss_pred EE
T ss_conf 99
No 114
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; InterPro: IPR014008 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase . There are at least two distinct cobalamin biosynthetic pathways in bacteria : Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CbiT subunit of precorrin-6Y C5,15-methyltransferase (2.1.1.132 from EC) from the anaerobic pathway, a bifunctional enzyme that catalyses two methylations (at C-5 and C-15) in precorrin-6Y, as well as the decarboxylation of the acetate side chain located in ring C, in order to generate precorrin-8X. In the anaerobic pathway, two enzymes are required to produce precorrin-8X: CbiE and CbiT, which can be fused as CbiET (sometimes called CobL) . In the aerobic pathway, the bifunctional enzyme is CobL .; GO: 0008276 protein methyltransferase activity, 0009236 cobalamin biosynthetic process.
Probab=96.71 E-value=0.013 Score=36.77 Aligned_cols=103 Identities=20% Similarity=0.157 Sum_probs=63.2
Q ss_pred CCCCC-EEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEECCCCHHHHHHHHHHH-CCCCCCEEEEC
Q ss_conf 13796-78885045530689999970687883278641121333469817830112207999999973-13887489753
Q gi|254780313|r 65 LQSNR-RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQA-IGGNPDLVLSD 142 (227)
Q Consensus 65 ~k~g~-~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~i~gv~~~~gDi~~~~~~~~i~~~-l~~~~DlVlSD 142 (227)
++|++ .++|+||+-|+=|-=+++++++ .++|+|||-.+-. + +. +....+.+ .-...++|-.|
T Consensus 17 l~~~~~v~wDIGaGtGS~~iE~~~~~p~---~g~v~aiEr~~~~----~-----~~----~~~N~~~~c~~~~~~i~~g~ 80 (135)
T TIGR02469 17 LRPGDSVLWDIGAGTGSVTIEAARLVPN---SGRVYAIERNPEA----L-----RL----IERNLRRFCGVSNIVIVEGD 80 (135)
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHCCC---CCEEEEEECCHHH----H-----HH----HHHHHHHHCCCCCCEEEECC
T ss_conf 8999946889605748389999973598---6079998537689----8-----79----99999982899963256355
Q ss_pred CCHHHC---------CCCCCHHH---HHHHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf 202110---------22210157---889899988987641148774699993
Q gi|254780313|r 143 MAYPTI---------GHRKIDHL---RTMSLCEAATFFALEMLNIGGDFLVKT 183 (227)
Q Consensus 143 mapn~S---------G~~~~D~~---~~~~L~~~al~~A~~~Lk~gG~fV~K~ 183 (227)
..|+.- -..+.|.. -+-......++.+...|+|||-.|+-+
T Consensus 81 ap~~~~~~~~~~~~~~~~~~Da~fvGGs~~~~~~il~~~~~~l~~GGr~v~na 133 (135)
T TIGR02469 81 APEELLNSDAPEDSAKLPEPDAVFVGGSGGKLEEILEAVERRLRPGGRIVLNA 133 (135)
T ss_pred CCCCCCCCCCCHHHCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 68433367777100588746888883897178999999985059688888851
No 115
>TIGR00406 prmA ribosomal protein L11 methyltransferase; InterPro: IPR004498 Ribosomal protein L11 methyltransferase (2.1.1 from EC) is required for the methylation of ribosomal protein L11. It forms a bifunctional operon in Escherichia coli with panF (pantothenate transport).; GO: 0008276 protein methyltransferase activity, 0006479 protein amino acid methylation.
Probab=96.70 E-value=0.0035 Score=40.42 Aligned_cols=130 Identities=18% Similarity=0.261 Sum_probs=72.8
Q ss_pred HHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCC---CCCCEEEE-----CCCCHHHHHHH
Q ss_conf 99986458313796788850455306899999706878832786411213334---69817830-----11220799999
Q gi|254780313|r 56 LQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP---ILGVKFFK-----FDFLDLDSWEF 127 (227)
Q Consensus 56 ~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~---i~gv~~~~-----gDi~~~~~~~~ 127 (227)
+|..+.+.+=.+-++|+|+||+-|==+ .|+.+.|.. .++|+|+-|..- ..|...-+ -++.... ..+
T Consensus 185 Le~L~~~d~k~kh~~viD~GCGSGIL~-IAa~~LGa~----~~~g~D~DP~Ave~~r~N~~lN~v~~~~~~~~~~~-vPe 258 (330)
T TIGR00406 185 LELLEDLDLKDKHKKVIDVGCGSGILS-IAALKLGAA----KVVGIDIDPLAVESARKNAELNQVSDRLQVKLENS-VPE 258 (330)
T ss_pred HHHHHCCCCCCCCCEEEEECCCHHHHH-HHHHHHHHH----HEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHCCC-CCC
T ss_conf 998740147776654787126717899-999975123----11221377289999997687458864576432057-875
Q ss_pred HHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHH-CCEEEE
Q ss_conf 997313887489753202110222101578898999889876411487746999930599989999999862-584699
Q gi|254780313|r 128 IRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH-FQKVIH 205 (227)
Q Consensus 128 i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~~~-F~~V~~ 205 (227)
..+...+++|+|++-+-.. ....-+-.+..+++++|.|++==--+.-.+.+...+... |.-+.+
T Consensus 259 ~~~~~e~~~DViVANiLA~--------------vi~~L~p~~~~L~~~~G~lilSGIl~~~~~sV~~ay~q~GF~~~~~ 323 (330)
T TIGR00406 259 LEQPIEGKADVIVANILAE--------------VIKELYPQFSRLVKPGGHLILSGILETQAQSVCEAYEQAGFTVVEI 323 (330)
T ss_pred CCCCCCCCCCEEEECCHHH--------------HHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHCCCCEEHHH
T ss_conf 3453225667578800245--------------7876413551310689965741347647999999985579463434
No 116
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.60 E-value=0.0029 Score=40.90 Aligned_cols=121 Identities=20% Similarity=0.149 Sum_probs=70.9
Q ss_pred HHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC-CCCCCCCEEEECCCCHH
Q ss_conf 81844799999999986458313796788850455306899999706878832786411213-33469817830112207
Q gi|254780313|r 44 LEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-MEPILGVKFFKFDFLDL 122 (227)
Q Consensus 44 ~~gyrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~-~~~i~gv~~~~gDi~~~ 122 (227)
+-+|. ---+|.|+..+-+. .+=..+|||||+.|=.-.-+..... ++.||||.. |-.+... -++.+-
T Consensus 105 kL~Y~--vP~~l~emI~~~~~-g~F~~~lDLGCGTGL~G~~lR~~a~------~ltGvDiS~nMl~kA~e----Kg~YD~ 171 (287)
T COG4976 105 KLGYS--VPELLAEMIGKADL-GPFRRMLDLGCGTGLTGEALRDMAD------RLTGVDISENMLAKAHE----KGLYDT 171 (287)
T ss_pred HHCCC--CHHHHHHHHHHCCC-CCCCEEEECCCCCCCCCHHHHHHHH------HCCCCCHHHHHHHHHHH----CCCHHH
T ss_conf 73576--18999999975157-7620234426676766276788886------51277626999999886----241578
Q ss_pred HHHHHHHHH----CCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC
Q ss_conf 999999973----138874897532021102221015788989998898764114877469999305999
Q gi|254780313|r 123 DSWEFIRQA----IGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT 188 (227)
Q Consensus 123 ~~~~~i~~~----l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~ 188 (227)
-.+.+...+ -+.++|+|.+- |-.--+-=.+..+..+...|++||-|..-+-+..+
T Consensus 172 L~~Aea~~Fl~~~~~er~DLi~Aa-----------DVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~ 230 (287)
T COG4976 172 LYVAEAVLFLEDLTQERFDLIVAA-----------DVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPD 230 (287)
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHH-----------HHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 889899987552267764301245-----------67886400346899999855898648987231677
No 117
>KOG1500 consensus
Probab=96.59 E-value=0.0064 Score=38.75 Aligned_cols=120 Identities=18% Similarity=0.289 Sum_probs=73.6
Q ss_pred CHHHHHHHHHC----CHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCC--
Q ss_conf 99999998818----447999999999864583137967888504553068999997068788327864112133346--
Q gi|254780313|r 36 DPYVQRAQLEG----WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPI-- 109 (227)
Q Consensus 36 D~y~~~Ak~~g----yrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~i-- 109 (227)
-+|-.+.++++ |.--..|--.-+...-++ .+..|||.||+.|=-+-+|++-- ..+|.+|.-..|..-
T Consensus 144 ~~YG~L~~QQNMmQDYVRTgTY~~Ail~N~sDF--~~kiVlDVGaGSGILS~FAaqAG-----A~~vYAvEAS~MAqyA~ 216 (517)
T KOG1500 144 QFYGYLSQQQNMMQDYVRTGTYQRAILENHSDF--QDKIVLDVGAGSGILSFFAAQAG-----AKKVYAVEASEMAQYAR 216 (517)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CCCEEEEECCCCCHHHHHHHHHC-----CCEEEEEEHHHHHHHHH
T ss_conf 999998888888888885107899987043345--77489981588248999998738-----65389874567999999
Q ss_pred ---------CCCEEEECCCCHHHHHHHHHHHCCCCCCEEEEC-CCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf ---------981783011220799999997313887489753-2021102221015788989998898764114877469
Q gi|254780313|r 110 ---------LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSD-MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179 (227)
Q Consensus 110 ---------~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSD-mapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~f 179 (227)
..+..|.|-|.+.+ +..++|+++|. | |.-- -.+|+++ .-.+|.++|+|+|.+
T Consensus 217 ~Lv~~N~~~~rItVI~GKiEdie--------LPEk~DviISEPM-----G~mL-~NERMLE----sYl~Ark~l~P~GkM 278 (517)
T KOG1500 217 KLVASNNLADRITVIPGKIEDIE--------LPEKVDVIISEPM-----GYML-VNERMLE----SYLHARKWLKPNGKM 278 (517)
T ss_pred HHHHCCCCCCEEEECCCCCCEEC--------CCCCCCEEEECCC-----HHHH-HHHHHHH----HHHHHHHHCCCCCCC
T ss_conf 98743663203787056320103--------7510347872562-----1411-1088899----999998742877744
Q ss_pred E
Q ss_conf 9
Q gi|254780313|r 180 L 180 (227)
Q Consensus 180 V 180 (227)
.
T Consensus 279 f 279 (517)
T KOG1500 279 F 279 (517)
T ss_pred C
T ss_conf 6
No 118
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=96.42 E-value=0.035 Score=34.15 Aligned_cols=92 Identities=18% Similarity=0.208 Sum_probs=56.6
Q ss_pred HHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC-----------CCCCCCCEEEECCCC
Q ss_conf 999999986458313796788850455306899999706878832786411213-----------334698178301122
Q gi|254780313|r 52 AYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-----------MEPILGVKFFKFDFL 120 (227)
Q Consensus 52 afKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~-----------~~~i~gv~~~~gDi~ 120 (227)
+-+|.+.-..+-=...+ .||||-|+-|.++..+++... +|+||++.+ ...+.|++|+.+|..
T Consensus 193 ~e~l~~~a~~~~~~~~~-~vlDLYcG~Gtfsl~LA~~~~------~V~gVE~~~~aV~~A~~NA~~N~i~N~~fi~~~a~ 265 (363)
T PRK05031 193 NEKMLEWALDATKGSKG-DLLELYCGNGNFTLALARNFR------RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAE 265 (363)
T ss_pred HHHHHHHHHHHHHCCCC-CEEEEECCCCHHHHHHHHHCC------EEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHH
T ss_conf 99999999997613898-289860586642699886268------79999538999999999999869986499965899
Q ss_pred HHHH-HHHHHH--------HCCCCCCEEEECCCHHHCCCCC
Q ss_conf 0799-999997--------3138874897532021102221
Q gi|254780313|r 121 DLDS-WEFIRQ--------AIGGNPDLVLSDMAYPTIGHRK 152 (227)
Q Consensus 121 ~~~~-~~~i~~--------~l~~~~DlVlSDmapn~SG~~~ 152 (227)
+... ....+. .-...+|+|+-| |.-+|...
T Consensus 266 ~~~~~~~~~~~~~~l~~~~~~~~~~d~vvvD--PPR~Gl~~ 304 (363)
T PRK05031 266 EFTQAMNGVREFRRLKGIDLKSYNFSTIFVD--PPRAGLDE 304 (363)
T ss_pred HHHHHHHCCCHHHCCCCCCCCCCCCCEEEEC--CCCCCCCH
T ss_conf 9999873431010012466443558648989--99888749
No 119
>pfam08123 DOT1 Histone methylation protein DOT1. The DOT1 domain regulates gene expression by methylating histone H3. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast.
Probab=96.37 E-value=0.052 Score=33.03 Aligned_cols=109 Identities=27% Similarity=0.361 Sum_probs=67.5
Q ss_pred HHHHHHHCCCCCCCCEEEEEECCCCHHH-HHHHHHHCCCCCCEE-EEEECCCCCC--------------------CCCCC
Q ss_conf 9999864583137967888504553068-999997068788327-8641121333--------------------46981
Q gi|254780313|r 55 LLQINEKHQILQSNRRIVDLGSSPGSWS-QVAARITGSNANNTR-VVAIDILDME--------------------PILGV 112 (227)
Q Consensus 55 L~eId~kf~l~k~g~~VlDLGaaPGgWs-Qva~~~~~~~~~~~~-VigVDl~~~~--------------------~i~gv 112 (227)
+-+|-++-+ +++++..+||||+=|.-. |+|++. +++ .+||.+.+.. ...-+
T Consensus 31 is~ii~~~~-l~~~dvF~DLGSGVGnvv~QaAl~t------gc~~s~GiEi~~~~a~~A~~~~~~~~~~~~~~G~~~~~~ 103 (205)
T pfam08123 31 LSDVLDKCN-LGPQDVFVDLGSGVGNCVLQAALEF------GCKLSFGCEIMDNASNLAELQDEEFKKRCKLFGKKLGKI 103 (205)
T ss_pred HHHHHHHHC-CCCCCEEEECCCCCCHHHHHHHHHH------CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCE
T ss_conf 999999839-8976889985888329999999870------965388888656689999999999999999958876873
Q ss_pred EEEECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEE-EEEECC
Q ss_conf 78301122079999999731388748975320211022210157889899988987641148774699-993059
Q gi|254780313|r 113 KFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL-VKTFQG 186 (227)
Q Consensus 113 ~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV-~K~F~G 186 (227)
.+++|||.+++..+++. .++|+|+-. |..-|.....+|.+. +.-|++|--.| .|-|--
T Consensus 104 ~l~~gdFl~~~~~~~~~----~~a~VI~vN-------N~~F~~~Ln~~L~e~-----f~~lk~GtkIVS~k~f~p 162 (205)
T pfam08123 104 EFIRGSFLDNERVEEII----PEADVILVN-------NFAFDPELNLQLKEM-----LQDLKDGCKIISLKSFVP 162 (205)
T ss_pred EEEECCCCCCHHHHHHH----CCCCEEEEE-------CCCCCHHHHHHHHHH-----HHCCCCCCEEEECCCCCC
T ss_conf 89977778858899863----479889994-------324698899999999-----972999888997765468
No 120
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=96.33 E-value=0.057 Score=32.81 Aligned_cols=136 Identities=21% Similarity=0.209 Sum_probs=78.2
Q ss_pred CCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC-----------CCCCC-CEEEECCCCHHHHHHHHHHH
Q ss_conf 3137967888504553068999997068788327864112133-----------34698-17830112207999999973
Q gi|254780313|r 64 ILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM-----------EPILG-VKFFKFDFLDLDSWEFIRQA 131 (227)
Q Consensus 64 l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~-----------~~i~g-v~~~~gDi~~~~~~~~i~~~ 131 (227)
+..+|.+|+|+=|+=|-||--++..- ..+|+|+||+|- ..+.+ +..+.||..+... +.
T Consensus 185 ~v~~GE~V~DmFAGVGpfsi~~Ak~g-----~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~-----~~ 254 (341)
T COG2520 185 LVKEGETVLDMFAGVGPFSIPIAKKG-----RPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAP-----EL 254 (341)
T ss_pred HHCCCCEEEECCCCCCCCHHHHHHCC-----CCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHH-----CC
T ss_conf 30699889983578654012466547-----863999945989999999999855765515679664888502-----04
Q ss_pred CCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC------HHHHHHHHHHHCCEEEE
Q ss_conf 138874897532021102221015788989998898764114877469999305999------89999999862584699
Q gi|254780313|r 132 IGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT------TNDILCLLKKHFQKVIH 205 (227)
Q Consensus 132 l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~------~~~l~~~l~~~F~~V~~ 205 (227)
+.+|-|+.-.-+ .+..-+..|+..++.||....=.|.-++ +..+.....+.=.++.+
T Consensus 255 --~~aDrIim~~p~---------------~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~~~~~~v 317 (341)
T COG2520 255 --GVADRIIMGLPK---------------SAHEFLPLALELLKDGGIIHYYEFVPEDDIEERPEKRIKSAARKGGYKVEV 317 (341)
T ss_pred --CCCCEEEECCCC---------------CCHHHHHHHHHHHHCCCEEEEEECCCHHHCCCCHHHHHHHHHHHCCCCCEE
T ss_conf --667889838987---------------202338999998514867999962243411112599999987643676327
Q ss_pred ECCCCCCCCCCEEEEEECCCC
Q ss_conf 768665755824989830755
Q gi|254780313|r 206 VKPVASRAESVEMFLLAKGFR 226 (227)
Q Consensus 206 ~KP~aSR~~S~E~Ylv~~gfK 226 (227)
.+-.--|+-|--.|.||...+
T Consensus 318 ~~~r~VksysP~v~hv~vd~~ 338 (341)
T COG2520 318 LKVRRVKSYSPGVYHVVVDLR 338 (341)
T ss_pred EEEEEECCCCCCEEEEEEEEE
T ss_conf 889993231897159999999
No 121
>KOG3420 consensus
Probab=96.32 E-value=0.01 Score=37.41 Aligned_cols=126 Identities=22% Similarity=0.251 Sum_probs=82.8
Q ss_pred HHHHHHHCCCHHHHHHHHHCCHHH---HHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECC
Q ss_conf 999996408999999988184479---99999999864583137967888504553068999997068788327864112
Q gi|254780313|r 27 RDWLNRHINDPYVQRAQLEGWRAR---SAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI 103 (227)
Q Consensus 27 ~~W~~r~~~D~y~~~Ak~~gyrsR---aafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl 103 (227)
-.|.-.|..++=--+-.-|.|..| ||-=|.-|++.|+=| .|..++||||+-|--+ .+....+ .-.|+|+||
T Consensus 6 l~~~L~~v~gFeKpk~~LEQY~T~p~iAasM~~~Ih~Tygdi-Egkkl~DLgcgcGmLs-~a~sm~~----~e~vlGfDI 79 (185)
T KOG3420 6 LESRLQQVDGFEKPKLLLEQYPTRPHIAASMLYTIHNTYGDI-EGKKLKDLGCGCGMLS-IAFSMPK----NESVLGFDI 79 (185)
T ss_pred HHHHHHHHCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHCCC-CCCCHHHHCCCHHHHH-HHHHCCC----CCEEEEEEC
T ss_conf 999998740644431245517996789999999998620120-4746225247611567-7750578----733786405
Q ss_pred CCC---------CCC-CCCEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 133---------346-9817830112207999999973138874897532021102221015788989998898764
Q gi|254780313|r 104 LDM---------EPI-LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFAL 170 (227)
Q Consensus 104 ~~~---------~~i-~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~ 170 (227)
-|- ++. -.+.++++||+++.. .++.+|.++-|- |--|-++-.|- +....+|.+|-
T Consensus 80 dpeALEIf~rNaeEfEvqidlLqcdildle~-------~~g~fDtaviNp-pFGTk~~~aDm----~fv~~al~~~~ 144 (185)
T KOG3420 80 DPEALEIFTRNAEEFEVQIDLLQCDILDLEL-------KGGIFDTAVINP-PFGTKKKGADM----EFVSAALKVAS 144 (185)
T ss_pred CHHHHHHHHHCHHHHHHHHHEEEEECCCHHC-------CCCEEEEEEECC-CCCCCCCCCCH----HHHHHHHHHHH
T ss_conf 8899999861668752334212222155110-------587676678668-98764344338----99999999999
No 122
>TIGR00537 hemK_rel_arch methylase, putative; InterPro: IPR004557 These proteins exhibit homology to the Saccharomyces cerevisiae (yeast) ORF YDR140w (FYV9). No known function has been described for this yeast ORF though the null mutant is viable and exhibits K1 killer toxin hypersensitivity. Members of this entry are weakly related to the yeast ORF YNL063w which is a putative S-adenosyl-methionine-dependent methyltransferase . Members of this entry are found in archaeal, bacterial and eukaryotic lineages.; GO: 0008168 methyltransferase activity.
Probab=96.27 E-value=0.01 Score=37.54 Aligned_cols=128 Identities=17% Similarity=0.222 Sum_probs=71.6
Q ss_pred CCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCC----------CCCCEEEECCCCHHHHHHHHHHHC
Q ss_conf 8313796788850455306899999706878832786411213334----------698178301122079999999731
Q gi|254780313|r 63 QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP----------ILGVKFFKFDFLDLDSWEFIRQAI 132 (227)
Q Consensus 63 ~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~----------i~gv~~~~gDi~~~~~~~~i~~~l 132 (227)
.-.++.+-||++|++.| .++.++..+|. -.|+++|+.|..- -.++.++++|+++. .
T Consensus 17 ~~~k~ddeVlEiG~GtG----lvair~~~Kg~-k~i~~tDinP~Avk~~~~NA~~N~~~l~v~~~Dlf~~---------v 82 (183)
T TIGR00537 17 RELKPDDEVLEIGAGTG----LVAIRLKEKGK-KKILTTDINPFAVKLLRENAKLNNVELDVLETDLFEG---------V 82 (183)
T ss_pred HHHCCCCEEEEEECCHH----HHHHHHHCCCC-CEEEEEECCHHHHHHHHHCCHHCCCCEEEEECCCCCC---------C
T ss_conf 75169952899716804----89999851588-2078863687999987731000266404761113578---------5
Q ss_pred CC-CCCEEEECCCH--HHCCCCCCHHHH---------HHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHH-
Q ss_conf 38-87489753202--110222101578---------898999889876411487746999930599989999999862-
Q gi|254780313|r 133 GG-NPDLVLSDMAY--PTIGHRKIDHLR---------TMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH- 199 (227)
Q Consensus 133 ~~-~~DlVlSDmap--n~SG~~~~D~~~---------~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~~~- 199 (227)
.+ ||||||=- .| .+++...+|... --+....=|+-.-.+|++||...+=-=.=.++++.++.+...
T Consensus 83 ~geKFdviLFN-pPYlp~~~d~~~gd~Ld~A~dGGkdGr~vidrFldelp~~lk~gGrv~l~~SSl~~e~~~~~kl~~~G 161 (183)
T TIGR00537 83 RGEKFDVILFN-PPYLPLEDDEKRGDYLDLAIDGGKDGRKVIDRFLDELPEYLKEGGRVQLIQSSLSDEKDTLDKLDELG 161 (183)
T ss_pred CCCCEEEEEEC-CCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHCC
T ss_conf 55510277307-89888876523476644333178730578888876568887059989999606688688998876158
Q ss_pred CCEEEEE
Q ss_conf 5846997
Q gi|254780313|r 200 FQKVIHV 206 (227)
Q Consensus 200 F~~V~~~ 206 (227)
|+ +.+.
T Consensus 162 F~-~ei~ 167 (183)
T TIGR00537 162 FK-VEIV 167 (183)
T ss_pred CC-EEEE
T ss_conf 84-7998
No 123
>KOG2899 consensus
Probab=96.26 E-value=0.016 Score=36.31 Aligned_cols=45 Identities=20% Similarity=0.420 Sum_probs=33.3
Q ss_pred HHHHHCCCCCC----CCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC
Q ss_conf 99864583137----96788850455306899999706878832786411213
Q gi|254780313|r 57 QINEKHQILQS----NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD 105 (227)
Q Consensus 57 eId~kf~l~k~----g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~ 105 (227)
++|.+.+.+.. ...+||+||--|--|+-+++..++. .|+||||.+
T Consensus 44 ~~D~rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r----~iLGvDID~ 92 (288)
T KOG2899 44 DSDPRLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPR----RILGVDIDP 92 (288)
T ss_pred CCCHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCC----EEEEEECCH
T ss_conf 8873443135422476205750677546589999860643----346761568
No 124
>TIGR00080 pimt protein-L-isoaspartate O-methyltransferase; InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase () (PCMT) (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyzes the transfer of a methyl group from S- adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerization of normal L-aspartyl and L- asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process.
Probab=96.07 E-value=0.039 Score=33.83 Aligned_cols=96 Identities=21% Similarity=0.217 Sum_probs=60.2
Q ss_pred CCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------C-------CCCCCCEEEECCCCHHHHHH
Q ss_conf 8313796788850455306899999706878832786411213---------3-------34698178301122079999
Q gi|254780313|r 63 QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------M-------EPILGVKFFKFDFLDLDSWE 126 (227)
Q Consensus 63 ~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~-------~~i~gv~~~~gDi~~~~~~~ 126 (227)
+-|.|++.|||+||+-|--+=+.+..++. +|+|+||.-.+ + =...||.++.||=+.- ...
T Consensus 78 nhL~~~~~vLeiG~GSGY~aavlA~~v~~---~G~V~SiEri~~L~~~A~~~Lk~hhseqL~~~NV~v~~GDG~~G-~~~ 153 (228)
T TIGR00080 78 NHLKPGAKVLEIGTGSGYQAAVLAEIVGR---DGLVVSIERIPELVEKARRRLKKHHSEQLGLDNVIVIEGDGRQG-WEE 153 (228)
T ss_pred HHCCCCCEEEEECCCCHHHHHHHHHHHHC---CCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC-HHH
T ss_conf 52140355665047855899999998713---97189985357889999987654314440688658997788657-102
Q ss_pred HHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEC
Q ss_conf 99973138874897532021102221015788989998898764114877469999305
Q gi|254780313|r 127 FIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185 (227)
Q Consensus 127 ~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~ 185 (227)
.-++|-|+--+|| +.+-.+.+-+| +.||.+|+=+=+
T Consensus 154 ------~APYd~I~~~AA~-----k~iP~AL~~QL------------~eGG~L~~Pv~~ 189 (228)
T TIGR00080 154 ------KAPYDAILVTAAA-----KEIPKALIDQL------------EEGGILVLPVGE 189 (228)
T ss_pred ------CCCCCEEEEECCC-----CCCCHHHHHHH------------HHCCEEEECCEE
T ss_conf ------4883527752378-----98765789999------------728988620000
No 125
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=96.05 E-value=0.085 Score=31.70 Aligned_cols=100 Identities=19% Similarity=0.242 Sum_probs=64.8
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC-----------CCCCC-CEEEECCCCHHHHHHHHHHHCC
Q ss_conf 37967888504553068999997068788327864112133-----------34698-1783011220799999997313
Q gi|254780313|r 66 QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM-----------EPILG-VKFFKFDFLDLDSWEFIRQAIG 133 (227)
Q Consensus 66 k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~-----------~~i~g-v~~~~gDi~~~~~~~~i~~~l~ 133 (227)
.+..+||++|.+=|-=+-..+.-++. +++++.+|+.+- ..+.. +..+.| -++.+.+.....
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~---~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~----gdal~~l~~~~~ 130 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPD---DGRLTTIERDEERAEIARENLAEAGVDDRIELLLG----GDALDVLSRLLD 130 (219)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHCCC---CCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEEC----CCHHHHHHHCCC
T ss_conf 49864999635237999999963888---97699970798999999999997597652898835----747999973347
Q ss_pred CCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE-EECC
Q ss_conf 8874897532021102221015788989998898764114877469999-3059
Q gi|254780313|r 134 GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK-TFQG 186 (227)
Q Consensus 134 ~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K-~F~G 186 (227)
+.||+|.-|.++.- .-..++.+.+.|++||..|+= ++.+
T Consensus 131 ~~fDliFIDadK~~--------------yp~~le~~~~lLr~GGliv~DNvl~~ 170 (219)
T COG4122 131 GSFDLVFIDADKAD--------------YPEYLERALPLLRPGGLIVADNVLFG 170 (219)
T ss_pred CCCCEEEEECCHHH--------------CHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 88568998378435--------------99999999997378968998303567
No 126
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.05 E-value=0.022 Score=35.45 Aligned_cols=87 Identities=24% Similarity=0.294 Sum_probs=61.0
Q ss_pred HHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC-----------CCCCCCCEEEECCCCH
Q ss_conf 99999986458313796788850455306899999706878832786411213-----------3346981783011220
Q gi|254780313|r 53 YKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-----------MEPILGVKFFKFDFLD 121 (227)
Q Consensus 53 fKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~-----------~~~i~gv~~~~gDi~~ 121 (227)
=||.+.-..+--..++++|+||=|+=|.|+...++.. ..|+||++.+ ...+.|++|..+|..+
T Consensus 279 ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~------~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~ 352 (432)
T COG2265 279 EKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRV------KKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEE 352 (432)
T ss_pred HHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHCCCC------CEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHH
T ss_conf 9999999999743699779993558870135531246------5799996489999999999997398877999586888
Q ss_pred HHHHHHHHHHCCCCCCEEEECCCHHHCCCC
Q ss_conf 799999997313887489753202110222
Q gi|254780313|r 122 LDSWEFIRQAIGGNPDLVLSDMAYPTIGHR 151 (227)
Q Consensus 122 ~~~~~~i~~~l~~~~DlVlSDmapn~SG~~ 151 (227)
... ... -+..+|+|+-| |.-+|..
T Consensus 353 ~~~--~~~--~~~~~d~VvvD--PPR~G~~ 376 (432)
T COG2265 353 FTP--AWW--EGYKPDVVVVD--PPRAGAD 376 (432)
T ss_pred HHH--HHC--CCCCCCEEEEC--CCCCCCC
T ss_conf 865--100--25799989989--9999999
No 127
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=96.02 E-value=0.052 Score=33.05 Aligned_cols=130 Identities=22% Similarity=0.229 Sum_probs=81.8
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC------CCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCEE
Q ss_conf 3796788850455306899999706878832786411213------3346981783011220799999997313887489
Q gi|254780313|r 66 QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD------MEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLV 139 (227)
Q Consensus 66 k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~------~~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlV 139 (227)
..|..|++||.+-|-+|.-+..+.-.. ..+.++..++ ++--++++++.||..+.++ .+.++.+-.+|.|
T Consensus 47 esglpVlElGPGTGV~TkaIL~~gv~~---~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~--~l~e~~gq~~D~v 121 (194)
T COG3963 47 ESGLPVLELGPGTGVITKAILSRGVRP---ESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRT--TLGEHKGQFFDSV 121 (194)
T ss_pred CCCCEEEEECCCCCHHHHHHHHCCCCC---CCEEEEEECHHHHHHHHHHCCCCCCCCCCHHHHHH--HHHHCCCCEEEEE
T ss_conf 459764777698667689999657995---43689982779999999758875130540565787--7865279740168
Q ss_pred EECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHH---HHHHHCCEEEEECCCC
Q ss_conf 7532021102221015788989998898764114877469999305999899999---9986258469976866
Q gi|254780313|r 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILC---LLKKHFQKVIHVKPVA 210 (227)
Q Consensus 140 lSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~---~l~~~F~~V~~~KP~a 210 (227)
+|-. |- .+.--.+++++ |+-++..|..||.+|.=.+ |.-.+-+.. .-..+|+.|..==|.|
T Consensus 122 iS~l-Pl----l~~P~~~~iai----le~~~~rl~~gg~lvqftY-gp~s~v~l~r~~y~v~~~~~vvRN~PPA 185 (194)
T COG3963 122 ISGL-PL----LNFPMHRRIAI----LESLLYRLPAGGPLVQFTY-GPLSPVLLGRGDYNVQHFDFVVRNFPPA 185 (194)
T ss_pred EECC-CC----CCCCHHHHHHH----HHHHHHHCCCCCEEEEEEE-CCCCCCCCCCCCEEEEEEEEEEECCCCE
T ss_conf 8656-00----24867789999----9999985689972799984-6888121355513677866787258964
No 128
>pfam05958 tRNA_U5-meth_tr tRNA (Uracil-5-)-methyltransferase. This family consists of (Uracil-5-)-methyltransferases EC:2.1.1.35 from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity.
Probab=96.01 E-value=0.047 Score=33.31 Aligned_cols=89 Identities=19% Similarity=0.235 Sum_probs=56.1
Q ss_pred HHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC-----------CCCCCCCEEEECCCCH
Q ss_conf 99999986458313796788850455306899999706878832786411213-----------3346981783011220
Q gi|254780313|r 53 YKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-----------MEPILGVKFFKFDFLD 121 (227)
Q Consensus 53 fKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~-----------~~~i~gv~~~~gDi~~ 121 (227)
=+|.+.-..+--.+++ .||||=|+-|.++..+++... +|+||++.+ ...+.|+.|+.+|..+
T Consensus 184 ~~l~~~a~~~~~~~~~-~vlDlYcG~Gtfsl~lA~~~~------~V~GvE~~~~AV~~A~~Na~~N~i~Nv~f~~~~~~~ 256 (353)
T pfam05958 184 IKMLEWACEVTQGSKG-DLLELYCGNGNFSLALAQNFR------RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred HHHHHHHHHHHHCCCC-CEEEEECCCCHHHHHHHHHCC------EEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHH
T ss_conf 9999999998626899-589984688888899986478------799996259999999998998699864999728999
Q ss_pred HH-HHHHHHHH--C------CCCCCEEEECCCHHHCCC
Q ss_conf 79-99999973--1------388748975320211022
Q gi|254780313|r 122 LD-SWEFIRQA--I------GGNPDLVLSDMAYPTIGH 150 (227)
Q Consensus 122 ~~-~~~~i~~~--l------~~~~DlVlSDmapn~SG~ 150 (227)
.. .......+ + ...+|+|+=| |.-+|.
T Consensus 257 ~~~~~~~~~~~~~~~~i~~~~~~~d~vvlD--PPR~G~ 292 (353)
T pfam05958 257 FTQAMNGVREFRRLKGIDLKSYNCSTIFVD--PPRAGL 292 (353)
T ss_pred HHHHHHCCCHHHHCCCCCCCCCCCCCEEEC--CCCCCC
T ss_conf 999875242233203666322467725848--987777
No 129
>KOG0820 consensus
Probab=96.01 E-value=0.01 Score=37.42 Aligned_cols=110 Identities=21% Similarity=0.302 Sum_probs=70.9
Q ss_pred CCCHHHHHH--HH-CCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEE
Q ss_conf 400799999--64-089999999881844799999999986458313796788850455306899999706878832786
Q gi|254780313|r 23 QGSSRDWLN--RH-INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV 99 (227)
Q Consensus 23 ~~ss~~W~~--r~-~~D~y~~~Ak~~gyrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~Vi 99 (227)
.+||+.|.. .| ..-..+.+...+.+--+ +-=+.+|-++-.+ ||++.||++|-+||.-|+...+. .-+||
T Consensus 13 ~~ss~~~~~~~~~~~~~~kfnkd~GQHilkN-p~v~~~I~~ka~~-k~tD~VLEvGPGTGnLT~~lLe~------~kkVv 84 (315)
T KOG0820 13 RKSSRAWPEFRNPNSGGSKFNKDFGQHILKN-PLVIDQIVEKADL-KPTDVVLEVGPGTGNLTVKLLEA------GKKVV 84 (315)
T ss_pred CCCCCCCHHHCCCCCCCCCCCCCCCHHHHCC-HHHHHHHHHCCCC-CCCCEEEEECCCCCHHHHHHHHH------CCEEE
T ss_conf 5577555011065545766554301455547-7889999860478-99877999579877899999972------08489
Q ss_pred EECCCC-C-CC----CCC------CEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCC
Q ss_conf 411213-3-34----698------17830112207999999973138874897532021102
Q gi|254780313|r 100 AIDILD-M-EP----ILG------VKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIG 149 (227)
Q Consensus 100 gVDl~~-~-~~----i~g------v~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDmapn~SG 149 (227)
|+.+.| | .. ..| ...+.||+...+. -.+|+++|..-+++|-
T Consensus 85 A~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~---------P~fd~cVsNlPyqISS 137 (315)
T KOG0820 85 AVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL---------PRFDGCVSNLPYQISS 137 (315)
T ss_pred EEECCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCC---------CCCCEEECCCCCCCCC
T ss_conf 9940807899999986699865604688503125788---------5103112269853367
No 130
>TIGR00006 TIGR00006 S-adenosyl-methyltransferase MraW; InterPro: IPR002903 This is a family of methyltransferases. Methyltransferases are responsible for the transfer of methyl groups between two molecules.; GO: 0008168 methyltransferase activity.
Probab=96.00 E-value=0.14 Score=30.28 Aligned_cols=84 Identities=18% Similarity=0.261 Sum_probs=56.9
Q ss_pred HHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CCCCCC--CEEEECCCC
Q ss_conf 999999986458313796788850455306899999706878832786411213---------334698--178301122
Q gi|254780313|r 52 AYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------MEPILG--VKFFKFDFL 120 (227)
Q Consensus 52 afKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~~i~g--v~~~~gDi~ 120 (227)
+.||.| -+++ +|+.+-||+=.+-||=||++.+..+. .|+.+|+|--+ .....| +..+.+.|.
T Consensus 16 ~Cklv~---~L~i-k~~G~YiD~T~G~GGHS~~iL~ql~~---~g~L~~iD~D~~ai~~A~~~l~~~~~~~~~~~~~~F~ 88 (323)
T TIGR00006 16 VCKLVE---GLNI-KPDGIYIDCTLGRGGHSKAILEQLSE---KGRLIGIDRDKQAIAFAKELLKDFEGRRVVLIHDNFA 88 (323)
T ss_pred HHHHHH---CCCC-CCCCEEEEECCCCHHHHHHHHHHCCC---CCEEEEEECCHHHHHHHHHHHHHHCCCEEEEECCCCH
T ss_conf 999972---7654-88873654025851789999852399---9507887479899999999853210675788507603
Q ss_pred HHHHHHHHHHH-CCCCCCEEEECCC
Q ss_conf 07999999973-1388748975320
Q gi|254780313|r 121 DLDSWEFIRQA-IGGNPDLVLSDMA 144 (227)
Q Consensus 121 ~~~~~~~i~~~-l~~~~DlVlSDma 144 (227)
...... .+. .-+++|=||-|.+
T Consensus 89 ~~~~~~--~~~~~~~k~dGIL~DLG 111 (323)
T TIGR00006 89 NFFEYL--KELDLVTKIDGILVDLG 111 (323)
T ss_pred HHHHHH--HCCCCEEEEEEEEECCC
T ss_conf 420032--11588157745886157
No 131
>KOG2904 consensus
Probab=95.96 E-value=0.056 Score=32.87 Aligned_cols=136 Identities=21% Similarity=0.168 Sum_probs=72.8
Q ss_pred CCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCC-----------CCCCCEE-----EECCCCHHHHHHHHHHH
Q ss_conf 9678885045530689999970687883278641121333-----------4698178-----30112207999999973
Q gi|254780313|r 68 NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME-----------PILGVKF-----FKFDFLDLDSWEFIRQA 131 (227)
Q Consensus 68 g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~-----------~i~gv~~-----~~gDi~~~~~~~~i~~~ 131 (227)
+..++|+||+-|.-+-....-.+ .++|+|||..+.. .+.|-.- +++|..++. ..
T Consensus 149 ~~~ildlgtGSGaIslsll~~L~----~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~------~l 218 (328)
T KOG2904 149 HTHILDLGTGSGAISLSLLHGLP----QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEH------PL 218 (328)
T ss_pred CCEEEEECCCCCHHHHHHHHCCC----CCEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCC------CC
T ss_conf 66688705783188999983478----734899853288999999889987415846898412220125655------45
Q ss_pred CCCCCCEEEECCCHHHCC--CCCCHHH--------------HHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHH-
Q ss_conf 138874897532021102--2210157--------------88989998898764114877469999305999899999-
Q gi|254780313|r 132 IGGNPDLVLSDMAYPTIG--HRKIDHL--------------RTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILC- 194 (227)
Q Consensus 132 l~~~~DlVlSDmapn~SG--~~~~D~~--------------~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~- 194 (227)
+.++.|+++|.= |-+.- +...+.. --++.....+..|.+.|++||.+..-+-.-.+...+.+
T Consensus 219 ~~~~~dllvsNP-PYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~~~~~~lv~~ 297 (328)
T KOG2904 219 LEGKIDLLVSNP-PYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVERKEHSYLVRI 297 (328)
T ss_pred CCCCEEEEECCC-CCCCCCCHHHCCCHHEECCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHH
T ss_conf 457524885389-9655551223271330237445430666326999999876675456688588973355668199999
Q ss_pred ----HHHHHCCEEEEECCCCCCCC
Q ss_conf ----99862584699768665755
Q gi|254780313|r 195 ----LLKKHFQKVIHVKPVASRAE 214 (227)
Q Consensus 195 ----~l~~~F~~V~~~KP~aSR~~ 214 (227)
.....|..+.+..--+-|+.
T Consensus 298 ~m~s~~~d~~~~~~v~~Df~~~~R 321 (328)
T KOG2904 298 WMISLKDDSNGKAAVVSDFAGRPR 321 (328)
T ss_pred HHHHCHHHCCCHHHEEECCCCCCC
T ss_conf 987132201321331443357863
No 132
>pfam10294 Methyltransf_16 Putative methyltransferase.
Probab=95.91 E-value=0.1 Score=31.24 Aligned_cols=115 Identities=18% Similarity=0.128 Sum_probs=62.0
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCC------------CCCCEEEECCCCHHHHHHHHHHHCC
Q ss_conf 3796788850455306899999706878832786411213334------------6981783011220799999997313
Q gi|254780313|r 66 QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP------------ILGVKFFKFDFLDLDSWEFIRQAIG 133 (227)
Q Consensus 66 k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~------------i~gv~~~~gDi~~~~~~~~i~~~l~ 133 (227)
-++.+||+|||+.|-=.-.++...+ ...|+.-|+.+..+ -..+.+...|-.+..... + .-.
T Consensus 43 ~~~k~VLELGaG~GL~Gi~~a~~~~----~~~V~lTD~~~~l~~l~~Nv~~N~~~~~~v~~~~LdWg~~~~~~-~--~~~ 115 (171)
T pfam10294 43 LSGKNVLELGSGCGLVGIAVALLLP----GASVTITDLEEAIELMKKNIELNKALSSKVTAKVLDWGEELPDD-V--FDP 115 (171)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHCC----CCEEEECCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHH-H--CCC
T ss_conf 0687678705665758999998579----85899638378999999999970578996699981108988433-3--146
Q ss_pred CCCCEEEE-CCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE-ECCCCHHHHHHHHHHH
Q ss_conf 88748975-320211022210157889899988987641148774699993-0599989999999862
Q gi|254780313|r 134 GNPDLVLS-DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT-FQGGTTNDILCLLKKH 199 (227)
Q Consensus 134 ~~~DlVlS-Dmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~-F~G~~~~~l~~~l~~~ 199 (227)
.++|+|+. |.-- +.. +...-+......|+|+|.+++=. .+.+...+|.+.++.+
T Consensus 116 ~~fD~Il~sD~iY--------~~~----~~~~L~~ti~~ll~~~g~~lla~~~R~~~~~~F~~~~~~~ 171 (171)
T pfam10294 116 HPVDLILAADCVY--------NED----AFPLLVKTLKDLLGKETVILVAYKKRREAEKRFFKLLKEF 171 (171)
T ss_pred CCCCEEEEECEEE--------CHH----HHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHC
T ss_conf 7767899712133--------577----7999999999995899899999782067799999998639
No 133
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=95.88 E-value=0.11 Score=30.98 Aligned_cols=103 Identities=22% Similarity=0.266 Sum_probs=68.5
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECC--CCCC----CCCCCEEEECCCCHHHHHHHHHHHCCCCCC-EE
Q ss_conf 7967888504553068999997068788327864112--1333----469817830112207999999973138874-89
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI--LDME----PILGVKFFKFDFLDLDSWEFIRQAIGGNPD-LV 139 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl--~~~~----~i~gv~~~~gDi~~~~~~~~i~~~l~~~~D-lV 139 (227)
.-..|++.|.+=||=.-+-+..+-.-|..-+|++||+ .|.. +.+++.|++|+=++++..+.++..-++..- .|
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~~~~y~kIfv 148 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRLKNEYPKIFV 148 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCEEE
T ss_conf 97506764232574011206769864997328997456675886563179738983798887899999997457996799
Q ss_pred EECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 753202110222101578898999889876411487746999
Q gi|254780313|r 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV 181 (227)
Q Consensus 140 lSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~ 181 (227)
+-| .||. ++-.++.|++-..+|.-|--+|+
T Consensus 149 ilD----------sdHs--~~hvLAel~~~~pllsaG~Y~vV 178 (237)
T COG3510 149 ILD----------SDHS--MEHVLAELKLLAPLLSAGDYLVV 178 (237)
T ss_pred EEC----------CCCH--HHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 964----------8750--99999999976067643756999
No 134
>PRK05785 hypothetical protein; Provisional
Probab=95.87 E-value=0.045 Score=33.42 Aligned_cols=64 Identities=23% Similarity=0.279 Sum_probs=38.4
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC-CCCC--CCCEEEECCCCHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 3796788850455306899999706878832786411213-3346--981783011220799999997313887489753
Q gi|254780313|r 66 QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-MEPI--LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSD 142 (227)
Q Consensus 66 k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~-~~~i--~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSD 142 (227)
+++.+||||||++|-.+. .. . ....|+|+|+.+ |-.+ .....++||..+ ..+-+..||+|++=
T Consensus 50 ~~~~~vLDva~GTGd~a~---~l-~---~~~~v~~~D~s~~ML~~a~~~~~~v~~~ae~-------LPf~d~sFD~vt~~ 115 (225)
T PRK05785 50 KSPLKVLDAGAGPGNMAY---HL-R---KIRYVVALDYTEEMLRLNLVADDKVVGSFEA-------MPFRDKSFDLVMSG 115 (225)
T ss_pred CCCCEEEEECCCCHHHHH---HH-H---CCCEEEEEECCHHHHHHHHHCCCCEEEHHHH-------CCCCCCCEEEEEEE
T ss_conf 888828995688439999---96-3---4786999988999999876432113731853-------99998825277634
Q ss_pred C
Q ss_conf 2
Q gi|254780313|r 143 M 143 (227)
Q Consensus 143 m 143 (227)
-
T Consensus 116 F 116 (225)
T PRK05785 116 Y 116 (225)
T ss_pred E
T ss_conf 4
No 135
>pfam08003 Methyltransf_9 Protein of unknown function (DUF1698). This family contains many hypothetical proteins. It also includes two putative methyltransferase proteins.
Probab=95.86 E-value=0.062 Score=32.57 Aligned_cols=117 Identities=22% Similarity=0.257 Sum_probs=60.0
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC--------C----CCCCCEEEECCCCHHHHHHHHHHHCCC
Q ss_conf 7967888504553068999997068788327864112133--------3----469817830112207999999973138
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM--------E----PILGVKFFKFDFLDLDSWEFIRQAIGG 134 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~--------~----~i~gv~~~~gDi~~~~~~~~i~~~l~~ 134 (227)
.|.+|||+||+-|- |+-+-.+. | .-.|+|+|-... . +...+..+ +-..+.+-. + .
T Consensus 115 ~gk~VlDVGcgNGY---y~~RMlg~-g-a~~viGiDPs~lf~~QF~ai~~~~~~~~~~~~l------Plg~E~lp~-~-~ 181 (315)
T pfam08003 115 KGRTILDVGCGNGY---HMWRMLGE-G-AALVVGIDPSELFLCQFEAVRKLLGNDQRAHLL------PLGIEQLPA-L-E 181 (315)
T ss_pred CCCEEEECCCCCHH---HHHHHHHC-C-CCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEE------CCCHHHCCC-C-C
T ss_conf 68988751778649---99986223-9-987998898199999999999970898756885------367654866-3-4
Q ss_pred CCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE--CCC---------------------CHHH
Q ss_conf 87489753202110222101578898999889876411487746999930--599---------------------9899
Q gi|254780313|r 135 NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF--QGG---------------------TTND 191 (227)
Q Consensus 135 ~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F--~G~---------------------~~~~ 191 (227)
.||+|.|=+-- .+-.|.. ..|.-....|++||.+|.-.. +|. ....
T Consensus 182 ~FDtVFsMGVL----YHrrsP~-------~hL~~Lk~~L~~gGeLvLETlvi~gd~~~~L~P~~rYA~M~NV~fiPS~~~ 250 (315)
T pfam08003 182 AFDTVFSMGVL----YHRRSPL-------DHLLQLKDQLVKGGELVLETLVIEGDENTVLVPGDRYAQMRNVYFIPSAAA 250 (315)
T ss_pred CCCEEEEEEEE----ECCCCHH-------HHHHHHHHHCCCCCEEEEEEEEECCCCCEEECCCCCCCCCCCCEECCCHHH
T ss_conf 21557765444----3268989-------999999985287978999987765988725678854147987545478899
Q ss_pred HHHHH-HHHCCEEEEEC
Q ss_conf 99999-86258469976
Q gi|254780313|r 192 ILCLL-KKHFQKVIHVK 207 (227)
Q Consensus 192 l~~~l-~~~F~~V~~~K 207 (227)
+...+ +.-|+.|.++.
T Consensus 251 L~~Wl~r~GF~~i~~vd 267 (315)
T pfam08003 251 LKNWLEKCGFVDVRIVD 267 (315)
T ss_pred HHHHHHHCCCCEEEEEE
T ss_conf 99999985993278887
No 136
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=95.85 E-value=0.041 Score=33.69 Aligned_cols=82 Identities=21% Similarity=0.320 Sum_probs=58.4
Q ss_pred HHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CCCCCCCEEEECCCCHHHHH
Q ss_conf 999986458313796788850455306899999706878832786411213---------33469817830112207999
Q gi|254780313|r 55 LLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------MEPILGVKFFKFDFLDLDSW 125 (227)
Q Consensus 55 L~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~~i~gv~~~~gDi~~~~~~ 125 (227)
+..|-+.-++ .++++||++|++.|+-|...+++.. +|++|.+.+ +.+..++..++||+...+..
T Consensus 19 ~~kIv~~a~~-~~~d~VlEIGpG~GaLT~~Ll~~~~------~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~ 91 (259)
T COG0030 19 IDKIVEAANI-SPGDNVLEIGPGLGALTEPLLERAA------RVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFP 91 (259)
T ss_pred HHHHHHHCCC-CCCCEEEEECCCCCHHHHHHHHHCC------EEEEEEECHHHHHHHHHHHCCCCCEEEEECCHHCCCCH
T ss_conf 9999985578-9998699978987788999996069------57999968899999997506566559994724247513
Q ss_pred HHHHHHCCCCCCEEEECCCHHHCC
Q ss_conf 999973138874897532021102
Q gi|254780313|r 126 EFIRQAIGGNPDLVLSDMAYPTIG 149 (227)
Q Consensus 126 ~~i~~~l~~~~DlVlSDmapn~SG 149 (227)
..+ ..+.|+|-.--|+|.
T Consensus 92 ~l~------~~~~vVaNlPY~Iss 109 (259)
T COG0030 92 SLA------QPYKVVANLPYNISS 109 (259)
T ss_pred HHC------CCCEEEECCCCCCCH
T ss_conf 515------788899808976567
No 137
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=95.81 E-value=0.069 Score=32.27 Aligned_cols=97 Identities=22% Similarity=0.351 Sum_probs=59.2
Q ss_pred CCCCCEEEEEECCCCHHHHHH-HHHHCCCCCCEEEEEECCCCCC----CCCCCEEEECCCCHHHHHHHHHHHCCC-CCCE
Q ss_conf 137967888504553068999-9970687883278641121333----469817830112207999999973138-8748
Q gi|254780313|r 65 LQSNRRIVDLGSSPGSWSQVA-ARITGSNANNTRVVAIDILDME----PILGVKFFKFDFLDLDSWEFIRQAIGG-NPDL 138 (227)
Q Consensus 65 ~k~g~~VlDLGaaPGgWsQva-~~~~~~~~~~~~VigVDl~~~~----~i~gv~~~~gDi~~~~~~~~i~~~l~~-~~Dl 138 (227)
+++|++||=.|++|.|=..++ ++..| ..+|+++|..+-. .--|+... -|..+.+..+.+++..++ .+|+
T Consensus 174 ~~~g~~VlV~GaG~iGl~a~~~ak~~G----a~~Vi~~d~~~~rl~~A~~lGa~~~-i~~~~~~~~~~v~~~t~g~G~Dv 248 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALAG----ASKIIAVDIDDRKLEWAREFGATHT-VNSSGTDPVEAIRALTGGFGADV 248 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHCCCEEE-ECCCCCCHHHHHHHHHCCCCCCE
T ss_conf 999988999673769999999999839----9189999198899999996599099-73998788999999858988749
Q ss_pred EEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf 975320211022210157889899988987641148774699993
Q gi|254780313|r 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT 183 (227)
Q Consensus 139 VlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~ 183 (227)
|+ | ++|.. .++..++..+++||.+|+==
T Consensus 249 vi-e----~~G~~------------~~~~~al~~~~~gG~iv~~G 276 (358)
T TIGR03451 249 VI-D----AVGRP------------ETYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred EE-E----CCCCH------------HHHHHHHHHHCCCCEEEEEE
T ss_conf 99-9----99998------------99999999762796999992
No 138
>PRK00274 ksgA dimethyladenosine transferase; Reviewed
Probab=95.81 E-value=0.029 Score=34.62 Aligned_cols=103 Identities=18% Similarity=0.259 Sum_probs=61.7
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC-----CCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCEE
Q ss_conf 13796788850455306899999706878832786411213-----3346981783011220799999997313887489
Q gi|254780313|r 65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-----MEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLV 139 (227)
Q Consensus 65 ~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~-----~~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlV 139 (227)
+.+++.||++|.++|+-|..+.+... +|++|++.+ ....+++.++.||+.+.+..+. .....-.|
T Consensus 37 ~~~~d~VlEIGpG~G~LT~~Ll~~~~------~v~aiEiD~~l~~~L~~~~~~~ii~~D~L~~~~~~~----~~~~~~~v 106 (267)
T PRK00274 37 LQPGDRVLEIGPGLGALTEPLLERAA------KVTAIEIDRDLAPILRETDNLTIIEGDALKVDLEEL----AEGQPLKV 106 (267)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHCC------CEEEEECCHHHHHHHHHCCCEEEEECHHHHCCHHHH----CCCCCEEE
T ss_conf 99999079963888889999996268------058863688999998504786999650664786774----56787279
Q ss_pred EECCCHHHCCC---CCCHHHH--HHHHHHHHHHHHHHCCCCCC
Q ss_conf 75320211022---2101578--89899988987641148774
Q gi|254780313|r 140 LSDMAYPTIGH---RKIDHLR--TMSLCEAATFFALEMLNIGG 177 (227)
Q Consensus 140 lSDmapn~SG~---~~~D~~~--~~~L~~~al~~A~~~Lk~gG 177 (227)
++-.--|+|.. +.+++.. .--..+.+-++|.++..+-|
T Consensus 107 vgNLPY~Iss~il~~~l~~~~~~~~~vlmvQkEvA~Ri~a~p~ 149 (267)
T PRK00274 107 VANLPYNISTPLLFKLLEEAPPIRDMVLMLQKEVAERIVAKPG 149 (267)
T ss_pred EECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9558830312899999854754124001115877777624799
No 139
>pfam01564 Spermine_synth Spermine/spermidine synthase. Spermine and spermidine are polyamines. This family includes spermidine synthase that catalyses the fifth (last) step in the biosynthesis of spermidine from arginine, and spermine synthase.
Probab=95.81 E-value=0.16 Score=29.98 Aligned_cols=124 Identities=15% Similarity=0.161 Sum_probs=73.4
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC---------------CCCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf 7967888504553068999997068788327864112133---------------3469817830112207999999973
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM---------------EPILGVKFFKFDFLDLDSWEFIRQA 131 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~---------------~~i~gv~~~~gDi~~~~~~~~i~~~ 131 (227)
+-.+||=+|.+=||-.- +.....+ -..|.-|||.+. -.-+.++.+.+| ....+.+.
T Consensus 75 ~pk~VLIiGGGDG~~~r---Evlk~~~-v~~v~~VEiD~~Vv~~~~~~lp~~~~~~~dprv~l~~~D-----g~~~l~~~ 145 (240)
T pfam01564 75 NPKKVLIIGGGDGGALR---EVVKHPS-VEKITLVEIDEKVIEFSKKFLPSLAGGFDDPRVKVVIGD-----GFKFLKDY 145 (240)
T ss_pred CCCEEEEECCCCHHHHH---HHHCCCC-CCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEEHH-----HHHHHHHC
T ss_conf 85536764586579999---9856799-538999757889999999987985243479855999816-----89999857
Q ss_pred CCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE----ECCCCHHHHHHHHHHHCCEEEEEC
Q ss_conf 1388748975320211022210157889899988987641148774699993----059998999999986258469976
Q gi|254780313|r 132 IGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT----FQGGTTNDILCLLKKHFQKVIHVK 207 (227)
Q Consensus 132 l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~----F~G~~~~~l~~~l~~~F~~V~~~K 207 (227)
..++|+|+.|. ++-.|.. ..-....-...+.+.|++||.||+-. ++...+..+.+.++..|..|..+-
T Consensus 146 -~~~yDvII~D~-~DP~~~~------~~Lfs~eFy~~~~~~L~~~Gi~v~Q~~sp~~~~~~~~~i~~~l~~~F~~v~~y~ 217 (240)
T pfam01564 146 -LVKFDVIIVDS-TDPVGPA------ENLFSKEFYDLLKRALKEDGVFVTQAESPWLHLELIINILKNGKKVFPVVMPYV 217 (240)
T ss_pred -CCCCCEEEEEC-CCCCCHH------HHHHHHHHHHHHHHHCCCCCEEEEECCCHHHCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf -25445899958-9976533------444229999999986599978999248834379999999999997789826998
No 140
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=95.76 E-value=0.025 Score=35.00 Aligned_cols=100 Identities=15% Similarity=0.193 Sum_probs=63.4
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CCCCCCCEEEECCCCHHHHHHHHHHHCCCCC
Q ss_conf 3796788850455306899999706878832786411213---------3346981783011220799999997313887
Q gi|254780313|r 66 QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------MEPILGVKFFKFDFLDLDSWEFIRQAIGGNP 136 (227)
Q Consensus 66 k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~ 136 (227)
.++++||++|+++|.-|+.+.+... +|++|.+.+ ....+++..+.+|+.+.+..+ ...
T Consensus 12 ~~~d~VlEIGPG~G~LT~~Ll~~~~------~v~aiE~D~~l~~~L~~~~~~~~n~~ii~~D~L~~~~~~-------~~~ 78 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLERAA------RVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPK-------LQP 78 (169)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHCC------CCCEEECCHHHHHHHHHHHCCCCCEEEEECCHHCCCCCC-------CCC
T ss_conf 9949799968970299999997316------353163788999999986410797799957111255311-------587
Q ss_pred CEEEECCCHHHCCC---CCCHHHH--HHHHHHHHHHHHHHCCCCCCE
Q ss_conf 48975320211022---2101578--898999889876411487746
Q gi|254780313|r 137 DLVLSDMAYPTIGH---RKIDHLR--TMSLCEAATFFALEMLNIGGD 178 (227)
Q Consensus 137 DlVlSDmapn~SG~---~~~D~~~--~~~L~~~al~~A~~~Lk~gG~ 178 (227)
..|++..--|+|.. +...+.. ..-..+.+-++|.++..+-|+
T Consensus 79 ~~iv~NLPY~Iss~il~~ll~~~~~~~~~~lm~QkEvA~Ri~a~p~~ 125 (169)
T smart00650 79 YKVVGNLPYNISTPILFKLLEEPPAFRDAVLMVQKEVARRLAAKPGS 125 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 36993476301189999998626541266655399999998637898
No 141
>KOG2915 consensus
Probab=95.75 E-value=0.023 Score=35.28 Aligned_cols=84 Identities=15% Similarity=0.188 Sum_probs=61.5
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CCC---CCCCEE
Q ss_conf 44799999999986458313796788850455306899999706878832786411213---------334---698178
Q gi|254780313|r 47 WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------MEP---ILGVKF 114 (227)
Q Consensus 47 yrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~~---i~gv~~ 114 (227)
|..-.++=|..+ + ++||.+|++-|.+-||.|-+.++-+++.| .++.+|.-. ... -.+|++
T Consensus 90 Yt~Dia~I~~~L----~-i~PGsvV~EsGTGSGSlShaiaraV~ptG---hl~tfefH~~Ra~ka~eeFr~hgi~~~vt~ 161 (314)
T KOG2915 90 YTPDIAMILSML----E-IRPGSVVLESGTGSGSLSHAIARAVAPTG---HLYTFEFHETRAEKALEEFREHGIGDNVTV 161 (314)
T ss_pred ECCCHHHHHHHH----C-CCCCCEEEECCCCCCHHHHHHHHHHCCCC---CEEEEEECHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 455699999986----5-79997898637886348899998637676---269998328789999999997377863489
Q ss_pred EECCCCHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf 30112207999999973138874897532
Q gi|254780313|r 115 FKFDFLDLDSWEFIRQAIGGNPDLVLSDM 143 (227)
Q Consensus 115 ~~gDi~~~~~~~~i~~~l~~~~DlVlSDm 143 (227)
..-|+.......+ ..++|.|.-||
T Consensus 162 ~hrDVc~~GF~~k-----s~~aDaVFLDl 185 (314)
T KOG2915 162 THRDVCGSGFLIK-----SLKADAVFLDL 185 (314)
T ss_pred EEEECCCCCCCCC-----CCCCCEEEECC
T ss_conf 9964156773531-----34235699758
No 142
>PTZ00338 dimethyladenosine transferase; Provisional
Probab=95.69 E-value=0.035 Score=34.13 Aligned_cols=70 Identities=14% Similarity=0.317 Sum_probs=48.8
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CC---CCCCCEEEECCCCHHHHHHHHHHHC
Q ss_conf 13796788850455306899999706878832786411213---------33---4698178301122079999999731
Q gi|254780313|r 65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------ME---PILGVKFFKFDFLDLDSWEFIRQAI 132 (227)
Q Consensus 65 ~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~---~i~gv~~~~gDi~~~~~~~~i~~~l 132 (227)
+.+++.||++|.++|++|+..++.. ..|++|.+.+ .. ...+++.+.||+.+.+.
T Consensus 36 ~~~~d~VlEIGPG~G~LT~~Ll~~~------~~v~aiEiD~~l~~~L~~~~~~~~~~~n~~ii~~D~Lk~d~-------- 101 (296)
T PTZ00338 36 IKPTDTVLEIGPGTGNLTEKLLQLA------KKVIAIEIDPRMVAELKKRFQNSPLASKLQVIEGDALKTEF-------- 101 (296)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHCC------CCEEEEEECHHHHHHHHHHHHCCCCCCCCEEECCHHHHCCC--------
T ss_conf 8989957996685429999998358------91799994889999999998514456673577050531856--------
Q ss_pred CCCCCEEEECCCHHHCC
Q ss_conf 38874897532021102
Q gi|254780313|r 133 GGNPDLVLSDMAYPTIG 149 (227)
Q Consensus 133 ~~~~DlVlSDmapn~SG 149 (227)
..+|+|++-.--|+|.
T Consensus 102 -~~~~~vVaNLPY~ISS 117 (296)
T PTZ00338 102 -PYFDVCVANVPYQISS 117 (296)
T ss_pred -CCCCEEEECCCCHHHH
T ss_conf -4114466358704479
No 143
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=95.68 E-value=0.069 Score=32.29 Aligned_cols=121 Identities=16% Similarity=0.199 Sum_probs=72.0
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC-----------CCCCCCCEEEECCCCHHHHHHHHHHHC-CC
Q ss_conf 796788850455306899999706878832786411213-----------334698178301122079999999731-38
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-----------MEPILGVKFFKFDFLDLDSWEFIRQAI-GG 134 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~-----------~~~i~gv~~~~gDi~~~~~~~~i~~~l-~~ 134 (227)
+...+||+||+-|.++--.+...+. ...||||+-. -..+.|+.++.+|+.+. . ...+ ++
T Consensus 54 ~~p~~lEIGfG~G~~l~~~A~~~P~----~~fIGiE~~~~gv~~~~~~~~~~~l~Ni~i~~~da~~~--l---~~~~~~~ 124 (229)
T PRK00121 54 DAPIHLEIGFGRGEFLVEMAKANPD----INFIGIEIHEPGVAKALKKIEEAGLKNLRLLCGDAVEV--L---EHFLPDG 124 (229)
T ss_pred CCCEEEEECCCCCHHHHHHHHHCCC----CCEEEEEEEHHHHHHHHHHHHHCCCCCEEEEECCHHHH--H---HHHCCCC
T ss_conf 9943999615896999999986888----86899996169999999999982998389883478999--9---9714645
Q ss_pred CC---CEEEECCCHHHCCCCCCHHH-HHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHH--CCEE
Q ss_conf 87---48975320211022210157-8898999889876411487746999930599989999999862--5846
Q gi|254780313|r 135 NP---DLVLSDMAYPTIGHRKIDHL-RTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH--FQKV 203 (227)
Q Consensus 135 ~~---DlVlSDmapn~SG~~~~D~~-~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~~~--F~~V 203 (227)
.+ .+--.|==|.. ..+- |.+ ...-|......|++||.+.+++=.-..+...+..+... |+.+
T Consensus 125 s~~~i~i~FPDPWpKk-----rH~KRRli--~~~fl~~~~~~Lk~~G~i~~~TD~~~Y~~~~~e~~~~~~~f~~~ 192 (229)
T PRK00121 125 SLDRIYLNFPDPWPKK-----RHHKRRLV--QPEFLELYARVLKPGGEFHFATDWEEYAEYMLEVFGAHPGFKNL 192 (229)
T ss_pred CCCEEEECCCCCCCCC-----CCCCCCCC--CHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEC
T ss_conf 4140467179999763-----20240128--99999999985799988999818799999999999868693742
No 144
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=95.67 E-value=0.15 Score=30.09 Aligned_cols=112 Identities=20% Similarity=0.219 Sum_probs=63.9
Q ss_pred CCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC-----------CCCCCCCEEEECCCCHHHHHHHHHHHCCCC-
Q ss_conf 96788850455306899999706878832786411213-----------334698178301122079999999731388-
Q gi|254780313|r 68 NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-----------MEPILGVKFFKFDFLDLDSWEFIRQAIGGN- 135 (227)
Q Consensus 68 g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~-----------~~~i~gv~~~~gDi~~~~~~~~i~~~l~~~- 135 (227)
+.+++|+|+++|-=.-.. ..+.+.. .|.=+|-+. --.++|+.++++.+.+.... .+
T Consensus 68 ~~~~~DIGSGaGfPGipL-AI~~p~~---~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~--------~~~ 135 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPL-AIAFPDL---KVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQE--------KKQ 135 (215)
T ss_pred CCEEEEECCCCCCCHHHH-HHHCCCC---CEEEECCCCHHHHHHHHHHHHHCCCCEEEEHHHHHHCCCC--------CCC
T ss_conf 887998579999731768-8856688---1899716750799999999985999749863127660144--------665
Q ss_pred CCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEE-EEEECCCCH-HHHHHHHHHH---CCEEEEE
Q ss_conf 748975320211022210157889899988987641148774699-993059998-9999999862---5846997
Q gi|254780313|r 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL-VKTFQGGTT-NDILCLLKKH---FQKVIHV 206 (227)
Q Consensus 136 ~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV-~K~F~G~~~-~~l~~~l~~~---F~~V~~~ 206 (227)
+|+|+|=+-.+. .. .+++|..+|++||.|+ .|.-.+.+. .+....+... +.+|..+
T Consensus 136 ~D~vtsRAva~L-----------~~----l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~~~~~~ 196 (215)
T COG0357 136 YDVVTSRAVASL-----------NV----LLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQVEKVFSL 196 (215)
T ss_pred CCEEEEEEECCH-----------HH----HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 758985420256-----------88----99999984346883202658765556899999987626817999986
No 145
>KOG2940 consensus
Probab=95.65 E-value=0.012 Score=37.02 Aligned_cols=136 Identities=21% Similarity=0.349 Sum_probs=78.7
Q ss_pred HHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC-C
Q ss_conf 999964089999999881844799999999986458313796788850455306899999706878832786411213-3
Q gi|254780313|r 28 DWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-M 106 (227)
Q Consensus 28 ~W~~r~~~D~y~~~Ak~~gyrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~-~ 106 (227)
-|+.+|.+| |.+++--.. - .|+-|++-+....++|+||+-|.-.. .+.+++ -++++-+|... |
T Consensus 44 a~~~d~k~d-ylkeeig~r----l------aDrvfD~kk~fp~a~diGcs~G~v~r---hl~~e~--vekli~~DtS~~M 107 (325)
T KOG2940 44 AWLSDQKND-YLKEEIGDR----L------ADRVFDCKKSFPTAFDIGCSLGAVKR---HLRGEG--VEKLIMMDTSYDM 107 (325)
T ss_pred HHCCHHHHH-HHHHHHHHH----H------HHHHHHHHHHCCCEEECCCCHHHHHH---HHHHCC--HHHEEEEECCHHH
T ss_conf 635100016-899998888----8------89998776607520440655446568---877525--1340664041679
Q ss_pred ----C--CCCCCE--EEECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCE
Q ss_conf ----3--469817--83011220799999997313887489753202110222101578898999889876411487746
Q gi|254780313|r 107 ----E--PILGVK--FFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD 178 (227)
Q Consensus 107 ----~--~i~gv~--~~~gDi~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~ 178 (227)
. .-+++. ...+| +++.+ +-...+|+|+|-|+. +|..|-..++--| ...|||.|-
T Consensus 108 ~~s~~~~qdp~i~~~~~v~D---EE~Ld----f~ens~DLiisSlsl----HW~NdLPg~m~~c-------k~~lKPDg~ 169 (325)
T KOG2940 108 IKSCRDAQDPSIETSYFVGD---EEFLD----FKENSVDLIISSLSL----HWTNDLPGSMIQC-------KLALKPDGL 169 (325)
T ss_pred HHHHHCCCCCCEEEEEEECC---HHCCC----CCCCCHHHHHHHHHH----HHHCCCCHHHHHH-------HHHCCCCCC
T ss_conf 99753268985379997255---10156----553501112654334----5640483689998-------874289751
Q ss_pred EEEEEECCCCHHHHHHHHH
Q ss_conf 9999305999899999998
Q gi|254780313|r 179 FLVKTFQGGTTNDILCLLK 197 (227)
Q Consensus 179 fV~K~F~G~~~~~l~~~l~ 197 (227)
|+.-+|-|...-+|...+.
T Consensus 170 FiasmlggdTLyELR~slq 188 (325)
T KOG2940 170 FIASMLGGDTLYELRCSLQ 188 (325)
T ss_pred CHHHHHCCCCHHHHHHHHH
T ss_conf 2167756440999998763
No 146
>KOG3010 consensus
Probab=95.50 E-value=0.026 Score=34.95 Aligned_cols=111 Identities=15% Similarity=0.098 Sum_probs=60.0
Q ss_pred CEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC-----CCCCCCCEEE-EC-CCCHHHHHHHHHHHC--CCCCCEE
Q ss_conf 6788850455306899999706878832786411213-----3346981783-01-122079999999731--3887489
Q gi|254780313|r 69 RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-----MEPILGVKFF-KF-DFLDLDSWEFIRQAI--GGNPDLV 139 (227)
Q Consensus 69 ~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~-----~~~i~gv~~~-~g-Di~~~~~~~~i~~~l--~~~~DlV 139 (227)
...+|+||++|-=++.+++.-. .|||+|+.+ ..+-+.+... .+ -+.+. ....++ ...+|+|
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k------~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~----~~v~L~g~e~SVDlI 104 (261)
T KOG3010 35 RLAWDVGTGNGQAARGIAEHYK------EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSD----EMVDLLGGEESVDLI 104 (261)
T ss_pred CEEEEECCCCCCCHHHHHHHHH------HHEEECCCHHHHHHHHCCCCCCCCCCCCCCCCC----CCCCCCCCCCCEEEE
T ss_conf 4588845688711478887543------431306879999986118986204578534566----565323787641211
Q ss_pred EECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC-EEEEEEEC--CCCHHHHHHHHHHHCC
Q ss_conf 75320211022210157889899988987641148774-69999305--9998999999986258
Q gi|254780313|r 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG-DFLVKTFQ--GGTTNDILCLLKKHFQ 201 (227)
Q Consensus 140 lSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG-~fV~K~F~--G~~~~~l~~~l~~~F~ 201 (227)
+|-- ..++-|-.+. ...+-++|++.| .+.+=.+. -....++...+.+...
T Consensus 105 ~~Aq-----a~HWFdle~f-------y~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~ 157 (261)
T KOG3010 105 TAAQ-----AVHWFDLERF-------YKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYD 157 (261)
T ss_pred HHHH-----HHHHHCHHHH-------HHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 0545-----6776342999-------999999807789779999724777677888899999765
No 147
>pfam00398 RrnaAD Ribosomal RNA adenine dimethylase.
Probab=95.45 E-value=0.045 Score=33.44 Aligned_cols=77 Identities=25% Similarity=0.396 Sum_probs=48.9
Q ss_pred HHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CCCCCCCEEEECCCCHHHHHHHH
Q ss_conf 986458313796788850455306899999706878832786411213---------33469817830112207999999
Q gi|254780313|r 58 INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------MEPILGVKFFKFDFLDLDSWEFI 128 (227)
Q Consensus 58 Id~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~~i~gv~~~~gDi~~~~~~~~i 128 (227)
|-+.-++ .++++||++|.+||.-|....+... .|++|.+.+ ....+++..+.+|+.+.+...
T Consensus 22 Iv~~~~~-~~~d~VlEIGPG~G~LT~~L~~~~~------~v~aiE~D~~l~~~L~~~~~~~~~~~ii~~D~l~~d~~~-- 92 (258)
T pfam00398 22 IVDKANL-QESDTVLEIGPGKGALTEELAKRAK------QVVAIEIDPRLAKRLQKKLALHPNVEVVHQDFLKFSFPK-- 92 (258)
T ss_pred HHHHCCC-CCCCEEEEECCCHHHHHHHHHHCCC------CEEEEECCHHHHHHHHHHHCCCCCEEEEECCHHCCCCCC--
T ss_conf 9997089-9999799979962399999996169------479995447799999986442897799966301057545--
Q ss_pred HHHCCCCCCEEEECCCHHHC
Q ss_conf 97313887489753202110
Q gi|254780313|r 129 RQAIGGNPDLVLSDMAYPTI 148 (227)
Q Consensus 129 ~~~l~~~~DlVlSDmapn~S 148 (227)
...-.|++-.=-|+|
T Consensus 93 -----~~~~~vvgNLPY~Is 107 (258)
T pfam00398 93 -----HEPFLVVGNIPYNIT 107 (258)
T ss_pred -----CCCEEEEECCCCCCC
T ss_conf -----786168944886341
No 148
>pfam02390 Methyltransf_4 Putative methyltransferase. This is a family of putative methyltransferases. The aligned region contains the GXGXG S-AdoMet binding site suggesting a putative methyltransferase activity.
Probab=95.36 E-value=0.087 Score=31.66 Aligned_cols=117 Identities=15% Similarity=0.137 Sum_probs=68.9
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------C---CCCCCCEEEECCCCHHHHHHHHHHHCC
Q ss_conf 3796788850455306899999706878832786411213---------3---346981783011220799999997313
Q gi|254780313|r 66 QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------M---EPILGVKFFKFDFLDLDSWEFIRQAIG 133 (227)
Q Consensus 66 k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~---~~i~gv~~~~gDi~~~~~~~~i~~~l~ 133 (227)
.++..+||+||+-|.|+--.+...+ +...+|||+.. + +.+.|+.++.+|.... +...+.
T Consensus 19 ~~~pi~lEIG~G~G~~l~~~A~~~p----~~n~iGiEi~~~~v~~~~~k~~~~~~l~Ni~~~~~da~~~-----l~~~~~ 89 (199)
T pfam02390 19 NEQPLFLEIGCGMGDFLVAMAKKNP----DKLFIGIEIRVPGVDKALKKIIALRGLQNLRILCGDAMKL-----LPNLFP 89 (199)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHCC----CCCEEEEEECHHHHHHHHHHHHHHCCCCCEEEECCCHHHH-----HHHHCC
T ss_conf 9994499973688899999999789----9878999950599999999999845777378760479999-----997579
Q ss_pred -CCCCEEE---ECCCHHHCCCCCCHHH-HHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHH
Q ss_conf -8874897---5320211022210157-889899988987641148774699993059998999999986
Q gi|254780313|r 134 -GNPDLVL---SDMAYPTIGHRKIDHL-RTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKK 198 (227)
Q Consensus 134 -~~~DlVl---SDmapn~SG~~~~D~~-~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~~ 198 (227)
+.+|-|. .|==|.. ..+- |.+ ...-+....+.|++||.+.+++=.-..+...+..+..
T Consensus 90 ~~~l~~i~i~FPDPWpKk-----rH~KRRli--~~~fl~~~~~~Lk~gG~l~~~TD~~~y~~~~~e~~~~ 152 (199)
T pfam02390 90 DGSLQKIFINFPDPWPKK-----RHHKRRLL--QPEFLKEYARVLKPGGVLHLATDVEEYFEWMLEHLSE 152 (199)
T ss_pred CCCEEEEEEECCCCCCCC-----CCCCCCCC--CHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHH
T ss_conf 886427999679998764-----42440007--9999999999638898999982899999999999996
No 149
>KOG3045 consensus
Probab=95.30 E-value=0.084 Score=31.74 Aligned_cols=115 Identities=18% Similarity=0.242 Sum_probs=64.9
Q ss_pred HHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCC
Q ss_conf 99998645831379678885045530689999970687883278641121333469817830112207999999973138
Q gi|254780313|r 55 LLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG 134 (227)
Q Consensus 55 L~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~i~gv~~~~gDi~~~~~~~~i~~~l~~ 134 (227)
|-.|.++.+.......|-|+||+-+ +.|.. ..-.|.+.||... |-..+.+||.+... -++
T Consensus 168 ld~ii~~ik~r~~~~vIaD~GCGEa---kiA~~------~~~kV~SfDL~a~----~~~V~~cDm~~vPl-------~d~ 227 (325)
T KOG3045 168 LDVIIRKIKRRPKNIVIADFGCGEA---KIASS------ERHKVHSFDLVAV----NERVIACDMRNVPL-------EDE 227 (325)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCHH---HHHHC------CCCCEEEEEEECC----CCCEEECCCCCCCC-------CCC
T ss_conf 9999999971767647885366423---33204------6665046630027----88535322447867-------667
Q ss_pred CCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEE-EEECC--CCHHHHHHHHHHH-CCE
Q ss_conf 87489753202110222101578898999889876411487746999-93059--9989999999862-584
Q gi|254780313|r 135 NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV-KTFQG--GTTNDILCLLKKH-FQK 202 (227)
Q Consensus 135 ~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~-K~F~G--~~~~~l~~~l~~~-F~~ 202 (227)
.+|+++.=.+ .-|.-..| -+.-|-++|++||.+-+ -+ ++ ++...|...+... |+.
T Consensus 228 svDvaV~CLS--LMgtn~~d----------f~kEa~RiLk~gG~l~IAEv-~SRf~dv~~f~r~l~~lGF~~ 286 (325)
T KOG3045 228 SVDVAVFCLS--LMGTNLAD----------FIKEANRILKPGGLLYIAEV-KSRFSDVKGFVRALTKLGFDV 286 (325)
T ss_pred CCCEEEEEHH--HHCCCHHH----------HHHHHHHHHCCCCEEEEEEH-HHHCCCHHHHHHHHHHCCCEE
T ss_conf 5447875275--53433899----------99999887335866999860-221340889999998728702
No 150
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=95.28 E-value=0.028 Score=34.74 Aligned_cols=94 Identities=27% Similarity=0.257 Sum_probs=64.9
Q ss_pred CEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC------CC-----CCCCEEEECCCCHHHHHHHHHHHCCCCCC
Q ss_conf 67888504553068999997068788327864112133------34-----69817830112207999999973138874
Q gi|254780313|r 69 RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM------EP-----ILGVKFFKFDFLDLDSWEFIRQAIGGNPD 137 (227)
Q Consensus 69 ~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~------~~-----i~gv~~~~gDi~~~~~~~~i~~~l~~~~D 137 (227)
+++-|||++.|=-+-+|++.. -+|+||...|. ++ ..++..+.||..+-+. .++|
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A------~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f---------e~AD 98 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAA------ERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF---------ENAD 98 (252)
T ss_pred HCEEECCCCCCHHHHHHHHHH------CEEEEEECCCHHHHHHHHCCCCCCCCCEEEEECCCCCCCC---------CCCC
T ss_conf 105634688632889887532------0278874180787776505777887646898055321332---------3453
Q ss_pred EEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEE-EEEECC
Q ss_conf 8975320211022210157889899988987641148774699-993059
Q gi|254780313|r 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL-VKTFQG 186 (227)
Q Consensus 138 lVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV-~K~F~G 186 (227)
+|+|.| .|.+...+=.--++.-++.+|+..++.+ -++|.|
T Consensus 99 vvicEm---------lDTaLi~E~qVpV~n~vleFLr~d~tiiPq~v~~~ 139 (252)
T COG4076 99 VVICEM---------LDTALIEEKQVPVINAVLEFLRYDPTIIPQEVRIG 139 (252)
T ss_pred EEHHHH---------HHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHC
T ss_conf 408777---------66776334212899999998633882525888614
No 151
>TIGR00740 TIGR00740 methyltransferase, putative; InterPro: IPR005271 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order . Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI ), shared by other AdoMet-Mtases , is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments , although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases , , , . The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences . The proteins of this family are restricted to the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 0dentity. It is reasonable to predict equivalent function within this subfamily. .
Probab=95.15 E-value=0.029 Score=34.62 Aligned_cols=128 Identities=21% Similarity=0.243 Sum_probs=68.8
Q ss_pred HHHHHH-HHHHCCC-CCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCC-CCCCCCCCEEEECCCCHHHHHHHH
Q ss_conf 999999-9864583-1379678885045530689999970687883278641121-333469817830112207999999
Q gi|254780313|r 52 AYKLLQ-INEKHQI-LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL-DMEPILGVKFFKFDFLDLDSWEFI 128 (227)
Q Consensus 52 afKL~e-Id~kf~l-~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~-~~~~i~gv~~~~gDi~~~~~~~~i 128 (227)
||=+-+ +.|+|-- --|+..|-||||+-|.++--+.+.+.. .+.++||||=. || =..++..|
T Consensus 44 ayfI~~nL~E~~~~kslp~~~vYDLGCS~G~~~l~~~R~I~~--~~~~~igIDNS~pM--------------~~~~~~~~ 107 (247)
T TIGR00740 44 AYFIGMNLAERFVPKSLPKPLVYDLGCSTGAATLSLRRNIQQ--DNIKIIGIDNSMPM--------------LERCREHI 107 (247)
T ss_pred HHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHCCCC--CCEEEEEECCCHHH--------------HHHHHHHH
T ss_conf 999987777654331168874122334323577665304687--85379884188889--------------99999999
Q ss_pred HHHCCC-CCCEEEECCCHHHCCCCCC--HHHHHHHHH-----------HHHHHHHHHCCCCCCEEEEE-EECCCCH--HH
Q ss_conf 973138-8748975320211022210--157889899-----------98898764114877469999-3059998--99
Q gi|254780313|r 129 RQAIGG-NPDLVLSDMAYPTIGHRKI--DHLRTMSLC-----------EAATFFALEMLNIGGDFLVK-TFQGGTT--ND 191 (227)
Q Consensus 129 ~~~l~~-~~DlVlSDmapn~SG~~~~--D~~~~~~L~-----------~~al~~A~~~Lk~gG~fV~K-~F~G~~~--~~ 191 (227)
..+-.. +++++-.|+ +++ ..+.+.-|. ...|.=.-.-|.+||.+|+- =|..+|. +.
T Consensus 108 ~~y~~~~Pv~~~~~D~-------~~v~~~~AS~~~L~F~LQFl~P~~R~~LL~KIY~~L~~nGvL~lsEK~~~ED~~~~~ 180 (247)
T TIGR00740 108 KAYKNAIPVEVLCMDI-------REVEIKNASMVVLNFTLQFLRPEEREALLKKIYNGLNPNGVLVLSEKFMFEDRKLDK 180 (247)
T ss_pred HHHCCCCCEEEEHHHH-------HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHH
T ss_conf 8742478823201024-------566665546887887760478234799999987410778668863201366789999
Q ss_pred HHHHHHHHCCE
Q ss_conf 99999862584
Q gi|254780313|r 192 ILCLLKKHFQK 202 (227)
Q Consensus 192 l~~~l~~~F~~ 202 (227)
++-.|-..|++
T Consensus 181 ~li~l~~~fK~ 191 (247)
T TIGR00740 181 LLIELHHLFKR 191 (247)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999874
No 152
>pfam01234 NNMT_PNMT_TEMT NNMT/PNMT/TEMT family.
Probab=95.12 E-value=0.3 Score=28.29 Aligned_cols=48 Identities=15% Similarity=0.241 Sum_probs=31.9
Q ss_pred HHHHHHHHHHCCCC-CCCCEEEEEECCCCHHHHHH-HHHHCCCCCCEEEEEECCCC
Q ss_conf 99999998645831-37967888504553068999-99706878832786411213
Q gi|254780313|r 52 AYKLLQINEKHQIL-QSNRRIVDLGSSPGSWSQVA-ARITGSNANNTRVVAIDILD 105 (227)
Q Consensus 52 afKL~eId~kf~l~-k~g~~VlDLGaaPGgWsQva-~~~~~~~~~~~~VigVDl~~ 105 (227)
-|-|.++.+.|.-- .+|.+.||+|++|-=+.-.. ++... .|+..|..+
T Consensus 40 ~f~l~~l~~~f~~g~~kg~~LiDvG~GPtiy~~lsA~~~f~------~I~lsDy~~ 89 (261)
T pfam01234 40 LFFLPNLLQTFGPGGVKGDTLIDIGSGPTIYQLLSACEVFK------EIHLSDYLP 89 (261)
T ss_pred HHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHCC------EEEECCCCH
T ss_conf 78899999983778746668998478945888876776507------178602557
No 153
>PHA02056 putative methyltransferase
Probab=95.11 E-value=0.018 Score=35.97 Aligned_cols=120 Identities=13% Similarity=0.148 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHCCCCCC-CCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC------CCCCCCEEEECCCCHH
Q ss_conf 999999999864583137-967888504553068999997068788327864112133------3469817830112207
Q gi|254780313|r 50 RSAYKLLQINEKHQILQS-NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM------EPILGVKFFKFDFLDL 122 (227)
Q Consensus 50 RaafKL~eId~kf~l~k~-g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~------~~i~gv~~~~gDi~~~ 122 (227)
-|.|--.-+--.|.|=-- ...||||||+=|.-|=+...++.+. .++-|.+++- .-+|-++.|.+|+++.
T Consensus 46 GAFFTP~~lA~DF~IDa~~tG~iiDLCAGIG~LSy~~~~r~kp~----~ivCVErN~~y~~vGkkilPeAtWI~~Dv~~~ 121 (279)
T PHA02056 46 GAFFTPEGLAWDFTIDAHCTGKVLDLCAGIGRLSFCMLHRCKPE----KIVCVELNPEFARIGKRLLPEAEWITSDVFEF 121 (279)
T ss_pred CCEECHHHHHHHEEEECCCCCEEEEECCCCCHHHHHHHHCCCCC----CEEEEEECHHHHHHHHHCCCCCEEEECCEECC
T ss_conf 53435156430225502578538882146123579998506886----35899408579886432076402773231303
Q ss_pred HHHHHHHHHCCCCCCEEEEC---CCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 99999997313887489753---2021102221015788989998898764114877469999
Q gi|254780313|r 123 DSWEFIRQAIGGNPDLVLSD---MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK 182 (227)
Q Consensus 123 ~~~~~i~~~l~~~~DlVlSD---mapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K 182 (227)
.. .++||+++|. ++-|++-.++.-.+-.-+.-..++.+| ..+..-|+|++-
T Consensus 122 ~~--------~~~FD~aIsNPPFG~i~~~~sK~~~~ytg~~FE~~Vi~~a-~~~Ad~G~FIiP 175 (279)
T PHA02056 122 ES--------NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLG-QKFADVGYFIVP 175 (279)
T ss_pred CC--------CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHH-HHHHCCCEEEEE
T ss_conf 56--------6620045338997643333357886645761157732456-676306349961
No 154
>KOG1663 consensus
Probab=95.01 E-value=0.27 Score=28.52 Aligned_cols=102 Identities=25% Similarity=0.327 Sum_probs=62.0
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC--------CCCCCC----CEEEECCCCHHHHHHHHHHHCC
Q ss_conf 3796788850455306899999706878832786411213--------334698----1783011220799999997313
Q gi|254780313|r 66 QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD--------MEPILG----VKFFKFDFLDLDSWEFIRQAIG 133 (227)
Q Consensus 66 k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~--------~~~i~g----v~~~~gDi~~~~~~~~i~~~l~ 133 (227)
.+..++||||.--|-=+--.+..+.+ +|+|+++|+.+ +-...| +++++|+- .+..+++....+
T Consensus 72 ~~ak~~lelGvfTGySaL~~Alalp~---dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a--~esLd~l~~~~~ 146 (237)
T KOG1663 72 LNAKRTLELGVFTGYSALAVALALPE---DGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPA--LESLDELLADGE 146 (237)
T ss_pred HCCCEEEEEECCCCHHHHHHHHHCCC---CCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCH--HHHHHHHHHCCC
T ss_conf 58733899812127899999974599---9659999618688887599998606330342342525--666999985579
Q ss_pred -CCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE--ECC
Q ss_conf -88748975320211022210157889899988987641148774699993--059
Q gi|254780313|r 134 -GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT--FQG 186 (227)
Q Consensus 134 -~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~--F~G 186 (227)
+.+|.+.-|. +.|.+. .-.+-+++++++||..++-- +.|
T Consensus 147 ~~tfDfaFvDa--------dK~nY~------~y~e~~l~Llr~GGvi~~DNvl~~G 188 (237)
T KOG1663 147 SGTFDFAFVDA--------DKDNYS------NYYERLLRLLRVGGVIVVDNVLWPG 188 (237)
T ss_pred CCCEEEEEECC--------CHHHHH------HHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf 98425999736--------667789------9999998562135389992223488
No 155
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.95 E-value=0.043 Score=33.58 Aligned_cols=96 Identities=24% Similarity=0.303 Sum_probs=65.5
Q ss_pred HHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC-----------CCCCCCCEEEECCCCHH
Q ss_conf 9999986458313796788850455306899999706878832786411213-----------33469817830112207
Q gi|254780313|r 54 KLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-----------MEPILGVKFFKFDFLDL 122 (227)
Q Consensus 54 KL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~-----------~~~i~gv~~~~gDi~~~ 122 (227)
+|+|+ =-++|+++||++||+-|-=+-+.+++++ +|++|+.-+ --.+.||.+.+||-..-
T Consensus 63 ~m~~~----L~~~~g~~VLEIGtGsGY~aAvla~l~~------~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G 132 (209)
T COG2518 63 RMLQL----LELKPGDRVLEIGTGSGYQAAVLARLVG------RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKG 132 (209)
T ss_pred HHHHH----HCCCCCCEEEEECCCCHHHHHHHHHHHC------EEEEEEECHHHHHHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf 99997----4899998688877783099999999748------4999997199999999999976987349997885568
Q ss_pred HHHHHHHHHC-CCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf 9999999731-3887489753202110222101578898999889876411487746999930
Q gi|254780313|r 123 DSWEFIRQAI-GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF 184 (227)
Q Consensus 123 ~~~~~i~~~l-~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F 184 (227)
+. ..++|.|+.-+|.+.- - ..-+..|++||.+|+=+=
T Consensus 133 --------~~~~aPyD~I~Vtaaa~~v-----P------------~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 133 --------WPEEAPYDRIIVTAAAPEV-----P------------EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred --------CCCCCCCCEEEEEECCCCC-----C------------HHHHHHCCCCCEEEEEEC
T ss_conf --------8777984789995035779-----9------------899985065988999985
No 156
>PRK00536 speE spermidine synthase; Provisional
Probab=94.73 E-value=0.38 Score=27.64 Aligned_cols=128 Identities=9% Similarity=-0.012 Sum_probs=70.8
Q ss_pred HHHHHCCCCC--CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC--C----CCCCCCEEEECCCCHHHH--HH
Q ss_conf 9986458313--796788850455306899999706878832786411213--3----346981783011220799--99
Q gi|254780313|r 57 QINEKHQILQ--SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD--M----EPILGVKFFKFDFLDLDS--WE 126 (227)
Q Consensus 57 eId~kf~l~k--~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~--~----~~i~gv~~~~gDi~~~~~--~~ 126 (227)
|+--.--++- +-.+||=+|.+=|| ++.+.+... ..|.-|+|-. + +-+|.. .+-+.++.. ..
T Consensus 60 EMl~Hvpl~~Hp~Pk~VLIIGGGDGG---~~REvlKH~---~~v~~VEID~~Vv~~sk~ylP~~---~~~~~dpr~~~~~ 130 (262)
T PRK00536 60 ELLAHMGGCTKKELKEVLIVDGFDLE---LAHQLFKYD---THVDFVQADEKILDSFISFFPHF---HEVKNNKNFTHAK 130 (262)
T ss_pred HHHHCHHHHCCCCCCEEEEECCCCHH---HHHHHHCCC---CEEEEEEECHHHHHHHHHHCHHH---HHHHCCCCEEHHH
T ss_conf 88753023218997879998687559---999987289---76699996789999999978565---6541399611399
Q ss_pred HHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE----ECCCCHHHHHHHHHHHCCE
Q ss_conf 999731388748975320211022210157889899988987641148774699993----0599989999999862584
Q gi|254780313|r 127 FIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT----FQGGTTNDILCLLKKHFQK 202 (227)
Q Consensus 127 ~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~----F~G~~~~~l~~~l~~~F~~ 202 (227)
........++|+|+.|- .|.....+.+ .+.|++||.+|+.. |+........+.++..|..
T Consensus 131 ~~~~~~~~~fDvIIvDs---------l~~~~~~~~l-------~~~L~~~Gi~v~Q~esp~~~~~~~~~~~~~~~~~F~~ 194 (262)
T PRK00536 131 QLLDLDIKKYDLIICLQ---------EPDIHKIDGL-------KRMLKEDGVFISVAKHPLLEHVSMQNALKNMGHFFSI 194 (262)
T ss_pred HHHHHCCCCCCEEEECC---------CCCCCHHHHH-------HHHHCCCCEEEECCCCHHHCHHHHHHHHHHHHHHCCE
T ss_conf 98761547668899889---------9980549999-------9985899899983897120799999999998865994
Q ss_pred EEEECCC
Q ss_conf 6997686
Q gi|254780313|r 203 VIHVKPV 209 (227)
Q Consensus 203 V~~~KP~ 209 (227)
+..+=|.
T Consensus 195 ~~~y~~~ 201 (262)
T PRK00536 195 AMPFVAP 201 (262)
T ss_pred EEEEECC
T ss_conf 5998446
No 157
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=94.73 E-value=0.23 Score=28.99 Aligned_cols=104 Identities=21% Similarity=0.190 Sum_probs=60.4
Q ss_pred CCCCC----CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC------------CCCCCCCEEEECCCCHHHHH
Q ss_conf 58313----796788850455306899999706878832786411213------------33469817830112207999
Q gi|254780313|r 62 HQILQ----SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD------------MEPILGVKFFKFDFLDLDSW 125 (227)
Q Consensus 62 f~l~k----~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~------------~~~i~gv~~~~gDi~~~~~~ 125 (227)
|+++. .|..||||-|+-|+-.-=|..+ ....++.||... ......+.++.+|.+
T Consensus 34 FNil~~~~i~g~~~LDlFAGSGaLGlEAlSR-----GA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~----- 103 (187)
T COG0742 34 FNILAPDEIEGARVLDLFAGSGALGLEALSR-----GAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDAL----- 103 (187)
T ss_pred HHHCCCCCCCCCEEEEECCCCCHHHHHHHHC-----CCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECHH-----
T ss_conf 9873434457988999468764768999857-----885699996598999999999998487612599840089-----
Q ss_pred HHHHHHCCCC--CCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHH--HHHCCCCCCEEEEEEECC
Q ss_conf 9999731388--748975320211022210157889899988987--641148774699993059
Q gi|254780313|r 126 EFIRQAIGGN--PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF--ALEMLNIGGDFLVKTFQG 186 (227)
Q Consensus 126 ~~i~~~l~~~--~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~--A~~~Lk~gG~fV~K~F~G 186 (227)
.....++++ ||+|..| |..- ....+.. .++.. ..++|+++|..||..=..
T Consensus 104 -~~L~~~~~~~~FDlVflD--PPy~-------~~l~~~~-~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 104 -RALKQLGTREPFDLVFLD--PPYA-------KGLLDKE-LALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred -HHHHHCCCCCCCCEEEEC--CCCC-------CCHHHHH-HHHHHHHHCCCCCCCCEEEEEECCC
T ss_conf -998722778851289968--9975-------3606689-9998887658778896899982787
No 158
>KOG2187 consensus
Probab=94.57 E-value=0.099 Score=31.28 Aligned_cols=92 Identities=18% Similarity=0.225 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC-----------CCCCCCCEEEECCC
Q ss_conf 9999999986458313796788850455306899999706878832786411213-----------33469817830112
Q gi|254780313|r 51 SAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-----------MEPILGVKFFKFDF 119 (227)
Q Consensus 51 aafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~-----------~~~i~gv~~~~gDi 119 (227)
+|=+|--+....--+..+..++|+||+-|-+.--.++.+ ..|+||.+.+ +..|.|++|++|--
T Consensus 367 ~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~------~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqa 440 (534)
T KOG2187 367 AAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGV------KRVIGVEISPDAVEDAEKNAQINGISNATFIVGQA 440 (534)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEHHHHCCC------CCEEEEECCHHHCCHHHHCCHHCCCCCCEEEECCH
T ss_conf 889999999997089988479986306884000010266------61210233845444355400115865402430642
Q ss_pred CHHHHHHHHHHHCCCCCC-EEEECCCHHHCCCCC
Q ss_conf 207999999973138874-897532021102221
Q gi|254780313|r 120 LDLDSWEFIRQAIGGNPD-LVLSDMAYPTIGHRK 152 (227)
Q Consensus 120 ~~~~~~~~i~~~l~~~~D-lVlSDmapn~SG~~~ 152 (227)
.+. ...+..-.-+.-+ +++.| |+-.|.+.
T Consensus 441 E~~--~~sl~~~~~~~~~~v~iiD--PpR~Glh~ 470 (534)
T KOG2187 441 EDL--FPSLLTPCCDSETLVAIID--PPRKGLHM 470 (534)
T ss_pred HHC--CCHHCCCCCCCCCEEEEEC--CCCCCCCH
T ss_conf 001--5012056788875689978--88676109
No 159
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=94.55 E-value=0.28 Score=28.48 Aligned_cols=99 Identities=11% Similarity=0.017 Sum_probs=58.1
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CC--CCCCCEEEECCCCHHHHHHHHHHHCCCC
Q ss_conf 796788850455306899999706878832786411213---------33--4698178301122079999999731388
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------ME--PILGVKFFKFDFLDLDSWEFIRQAIGGN 135 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~--~i~gv~~~~gDi~~~~~~~~i~~~l~~~ 135 (227)
.+.+||||.|+-|+-.-=|..+ ....|+.||... ++ ...++..+.+|. ...+ ...+.+
T Consensus 52 ~~~~vLDLFAGSGalGlEALSR-----GA~~v~fVE~~~~~~~~i~~N~~~l~~~~~~ii~~da-----~~~L-~~~~~~ 120 (198)
T PRK10909 52 VDARCLDCFAGSGALGLEALSR-----YAAGATLLEMDRAVSQQLIKNLATLKAGNARVVNTNA-----LSFL-AQPGTP 120 (198)
T ss_pred CCCEEEECCCCCCHHHHHHHHC-----CCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEHHH-----HHHH-HCCCCC
T ss_conf 9987998277746889999987-----9978999978999999999999984888679995569-----9986-255995
Q ss_pred CCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECC
Q ss_conf 748975320211022210157889899988987641148774699993059
Q gi|254780313|r 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG 186 (227)
Q Consensus 136 ~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G 186 (227)
||+|..| |...- .... ++.. +-....+|+++|.+|+-.-..
T Consensus 121 fDlIF~D--PPY~~---~~~~---~~l~--~l~~~~~L~~~gliiiE~~~~ 161 (198)
T PRK10909 121 HNVVFVD--PPFRK---GLLE---ETIN--LLEQNGWLADDALIYVESEVE 161 (198)
T ss_pred EEEEEEC--CCCCC---CHHH---HHHH--HHHHCCCCCCCCEEEEEECCC
T ss_conf 2189989--99765---5599---9999--999888918996999995488
No 160
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=94.48 E-value=0.3 Score=28.31 Aligned_cols=103 Identities=19% Similarity=0.321 Sum_probs=65.3
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------C--CCC--CCCEEEECCCCHHHHHHHHHHHC
Q ss_conf 3796788850455306899999706878832786411213---------3--346--98178301122079999999731
Q gi|254780313|r 66 QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------M--EPI--LGVKFFKFDFLDLDSWEFIRQAI 132 (227)
Q Consensus 66 k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~--~~i--~gv~~~~gDi~~~~~~~~i~~~l 132 (227)
-.|..+|-|=|..|+.|=+|+. |..-.+++||+.. | ..+ ..-.+++.|..+ .+.+ .
T Consensus 551 a~gk~fLNLF~YTgt~sv~Aa~-----gGA~~t~sVD~S~tyl~Wa~~N~~lN~~~~~~h~~v~aD~~~-----wl~~-~ 619 (716)
T PRK11783 551 AKGKRFLNLFAYTGTASVHAAL-----GGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRFIQADCLA-----WLKE-A 619 (716)
T ss_pred HCCCCEEEEEECCCCEEHHHHH-----CCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEECCHHH-----HHHH-C
T ss_conf 0788464312225610213352-----796122786270879999999998549996347389640899-----9985-7
Q ss_pred CCCCCEEEECCCHHHCCCCCC--------HHHHHHHHHHHHHHHHHHCCCCCCEEEEEE-ECCC
Q ss_conf 388748975320211022210--------157889899988987641148774699993-0599
Q gi|254780313|r 133 GGNPDLVLSDMAYPTIGHRKI--------DHLRTMSLCEAATFFALEMLNIGGDFLVKT-FQGG 187 (227)
Q Consensus 133 ~~~~DlVlSDmapn~SG~~~~--------D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~-F~G~ 187 (227)
..++|+|+.|- |-.|-.+.. ||... +..+...|.|||.++.-. +++.
T Consensus 620 ~~~fDli~~DP-PtFSnSk~m~~~~dvqrDh~~l-------i~~~~~~L~~~G~l~FS~N~r~F 675 (716)
T PRK11783 620 REQFDLIFIDP-PTFSNSKRMEDSFDVQRDHVAL-------IKLAMRLLRPGGTLYFSNNKRGF 675 (716)
T ss_pred CCCCCEEEECC-CCCCCCCCCCCCCCCCCCHHHH-------HHHHHHHCCCCCEEEEECCCCCC
T ss_conf 77667899889-9998766678863220309999-------99999860899689996288763
No 161
>TIGR00477 tehB tellurite resistance protein TehB; InterPro: IPR004537 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases . Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite.; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0046690 response to tellurium ion, 0005737 cytoplasm.
Probab=94.43 E-value=0.045 Score=33.43 Aligned_cols=111 Identities=18% Similarity=0.255 Sum_probs=63.5
Q ss_pred HHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCC--------CCCCCCCCEEEECCCCHHHHHHHH
Q ss_conf 998645831379678885045530689999970687883278641121--------333469817830112207999999
Q gi|254780313|r 57 QINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL--------DMEPILGVKFFKFDFLDLDSWEFI 128 (227)
Q Consensus 57 eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~--------~~~~i~gv~~~~gDi~~~~~~~~i 128 (227)
+|-+--++++||. +|||||+-|-=|-|.+-. |. =|-|+|-. .|+..++...+..++.|....
T Consensus 64 ~v~eAvk~v~PcK-tLDLGCGqGrNsLyLsl~----GY--DV~awD~n~~siA~v~~~k~~EnL~nl~t~~yDiNaa--- 133 (239)
T TIGR00477 64 EVLEAVKVVKPCK-TLDLGCGQGRNSLYLSLA----GY--DVDAWDHNEASIASVEEIKEKENLDNLRTDVYDINAA--- 133 (239)
T ss_pred HHHHHHHCCCCCC-EEECCCCCCHHHHHHHHH----CC--CCEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH---
T ss_conf 7775550237986-532688885378999761----68--4101216866887599888762671100465543355---
Q ss_pred HHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC-EEEEEEECCCC
Q ss_conf 9731388748975320211022210157889899988987641148774-69999305999
Q gi|254780313|r 129 RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG-DFLVKTFQGGT 188 (227)
Q Consensus 129 ~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG-~fV~K~F~G~~ 188 (227)
.++...|.|+|=.-.=.= +..+.= ..+.=...+-+||| |+|+=..+..|
T Consensus 134 --~~~e~YDFI~sTVVf~FL-----~a~rvP----~iIanMq~hT~pGGYNLIVaAMdTaD 183 (239)
T TIGR00477 134 --ALDEDYDFILSTVVFMFL-----EAERVP----EIIANMQEHTKPGGYNLIVAAMDTAD 183 (239)
T ss_pred --HCCCCCCEEEEEHHHHHH-----CCCCCH----HHHHHHHHHCCCCCCEEEEEECCCCC
T ss_conf --401278742102012210-----588772----67886587467987322233215788
No 162
>KOG4300 consensus
Probab=94.39 E-value=0.19 Score=29.50 Aligned_cols=120 Identities=18% Similarity=0.159 Sum_probs=64.0
Q ss_pred HCCCC-CCCC-EEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC-CCC----------CCCCE-EEECCCCHHHHHH
Q ss_conf 45831-3796-788850455306899999706878832786411213-334----------69817-8301122079999
Q gi|254780313|r 61 KHQIL-QSNR-RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-MEP----------ILGVK-FFKFDFLDLDSWE 126 (227)
Q Consensus 61 kf~l~-k~g~-~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~-~~~----------i~gv~-~~~gDi~~~~~~~ 126 (227)
.+.++ +.+. .||++||+||.=-+|--.. ....|..+|-.+ |+. .+.+. |..+|-.+.
T Consensus 68 i~~~~gk~~K~~vLEvgcGtG~Nfkfy~~~-----p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l---- 138 (252)
T KOG4300 68 IYYFLGKSGKGDVLEVGCGTGANFKFYPWK-----PINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENL---- 138 (252)
T ss_pred HHHHHCCCCCCCEEEECCCCCCCCCCCCCC-----CCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEEECHHCC----
T ss_conf 687734357513699614688885355578-----88568986784879999998886425720577785052107----
Q ss_pred HHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHCCE
Q ss_conf 9997313887489753202110222101578898999889876411487746999930599989999999862584
Q gi|254780313|r 127 FIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202 (227)
Q Consensus 127 ~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~~~F~~ 202 (227)
.+.-++.+|+|++-.. .=++ +=...+|.--.++|+|||.++.=----.+..-+...+...++.
T Consensus 139 --~~l~d~s~DtVV~Tlv-----LCSv------e~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~ep 201 (252)
T KOG4300 139 --PQLADGSYDTVVCTLV-----LCSV------EDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAEP 201 (252)
T ss_pred --CCCCCCCEEEEEEEEE-----EECC------CCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHCH
T ss_conf --4213677115777888-----7205------7799999998875088958999721244210899999987455
No 163
>KOG2361 consensus
Probab=94.37 E-value=0.11 Score=30.99 Aligned_cols=154 Identities=15% Similarity=0.149 Sum_probs=84.5
Q ss_pred CCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCC-CCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC------
Q ss_conf 0899999998818447999999999864583137-967888504553068999997068788327864112133------
Q gi|254780313|r 34 INDPYVQRAQLEGWRARSAYKLLQINEKHQILQS-NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM------ 106 (227)
Q Consensus 34 ~~D~y~~~Ak~~gyrsRaafKL~eId~kf~l~k~-g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~------ 106 (227)
.-|.+|+.-+..=+..|-. =+.|..+=+.+-.+ ..++|++||+-|.-+==+.+..++ .+-+|+++|..|-
T Consensus 38 ~wD~fy~~~~~rFfkdR~w-L~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n--~~l~v~acDfsp~Ai~~vk 114 (264)
T KOG2361 38 YWDTFYKIHENRFFKDRNW-LLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPN--NRLKVYACDFSPRAIELVK 114 (264)
T ss_pred HHHHHHHHCCCCCCCHHHH-HHHHHHHHHCCCCCCHHHHEEECCCCCCCCCHHHHCCCC--CCEEEEECCCCHHHHHHHH
T ss_conf 6456665324545311677-877567750755557345112224777512244424899--8738997489868999987
Q ss_pred ----CCCCCCEEEECCCCHHHHHHHHHHHCCCCCCEE-----EECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf ----346981783011220799999997313887489-----75320211022210157889899988987641148774
Q gi|254780313|r 107 ----EPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLV-----LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177 (227)
Q Consensus 107 ----~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlV-----lSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG 177 (227)
.....+.....|++.++. ......+.+|.| +|-+.|+- -..++.-...+|+|||
T Consensus 115 ~~~~~~e~~~~afv~Dlt~~~~---~~~~~~~svD~it~IFvLSAi~pek--------------~~~a~~nl~~llKPGG 177 (264)
T KOG2361 115 KSSGYDESRVEAFVWDLTSPSL---KEPPEEGSVDIITLIFVLSAIHPEK--------------MQSVIKNLRTLLKPGG 177 (264)
T ss_pred HCCCCCHHHHCCCCEECCCHHC---CCCCCCCCCCEEEEEEEEECCCHHH--------------HHHHHHHHHHHHCCCC
T ss_conf 3633264550120001656010---3788867633478999875148477--------------8999999999748886
Q ss_pred EEEEEEECCCCHHHHHHHHHHHCCEEEEEC
Q ss_conf 699993059998999999986258469976
Q gi|254780313|r 178 DFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207 (227)
Q Consensus 178 ~fV~K~F~G~~~~~l~~~l~~~F~~V~~~K 207 (227)
.+++.-|--.+..++.-.-.+.+.....++
T Consensus 178 ~llfrDYg~~DlaqlRF~~~~~i~~nfYVR 207 (264)
T KOG2361 178 SLLFRDYGRYDLAQLRFKKGQCISENFYVR 207 (264)
T ss_pred EEEEEECCCCHHHHHHCCCCCEEECCEEEC
T ss_conf 799841454347887515774320145881
No 164
>pfam03686 UPF0146 Uncharacterized protein family (UPF0146). The function of this family of proteins is unknown.
Probab=94.36 E-value=0.46 Score=27.11 Aligned_cols=97 Identities=23% Similarity=0.282 Sum_probs=70.6
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCHH
Q ss_conf 79678885045530689999970687883278641121333469817830112207999999973138874897532021
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYP 146 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDmapn 146 (227)
+...|+++| =|....+|..+... +..|+++|+.+.....|+.++..|+++++. +.. ..+|+|-|==-|
T Consensus 13 ~~gkiVEVG--IG~~~~vA~~L~~~---g~dv~~tDi~~~av~~gl~~v~DDif~P~~-----~lY-~~A~lIYSIRPp- 80 (127)
T pfam03686 13 ARGKVVEVG--IGFFLDVAKRLAER---GFDVLATDINEKAVPEGLRFVVDDITNPNI-----SIY-EGADLIYSIRPP- 80 (127)
T ss_pred CCCCEEEEE--CCCCHHHHHHHHHC---CCCEEEEECCCCCCCCCCCEEECCCCCCCH-----HHH-CCCCEEEECCCC-
T ss_conf 788589991--36888999999985---996899977765766788878725889898-----895-587889981898-
Q ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHH
Q ss_conf 10222101578898999889876411487746999930599989
Q gi|254780313|r 147 TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTN 190 (227)
Q Consensus 147 ~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~ 190 (227)
-||....+++|..+ |..++++-+-|+...
T Consensus 81 ------------~El~~~i~~lA~~v---~a~liI~PL~~e~~~ 109 (127)
T pfam03686 81 ------------PELQSAILDVAKAV---GAPLYIKPLTGEPVP 109 (127)
T ss_pred ------------HHHHHHHHHHHHHC---CCCEEEECCCCCCCC
T ss_conf ------------78889999999981---998999848899777
No 165
>KOG0024 consensus
Probab=94.12 E-value=0.036 Score=34.06 Aligned_cols=100 Identities=17% Similarity=0.298 Sum_probs=59.5
Q ss_pred CCCCCEEEEEECCCCHHHHH-HHHHHCCCCCCEEEEEECCCC----CCCCCCCEEEECCCC--H-HHHHHHHHHHCCCCC
Q ss_conf 13796788850455306899-999706878832786411213----334698178301122--0-799999997313887
Q gi|254780313|r 65 LQSNRRIVDLGSSPGSWSQV-AARITGSNANNTRVVAIDILD----MEPILGVKFFKFDFL--D-LDSWEFIRQAIGGNP 136 (227)
Q Consensus 65 ~k~g~~VlDLGaaPGgWsQv-a~~~~~~~~~~~~VigVDl~~----~~~i~gv~~~~gDi~--~-~~~~~~i~~~l~~~~ 136 (227)
+++|.+||=+||+|=|-.-- +++-+|. .+|+.+|+.+ +..--|++.+.-+-. + .+..+.+...++...
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA----~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~ 242 (354)
T KOG0024 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGA----SDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQ 242 (354)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC----CCEEEEECCHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHCCCCC
T ss_conf 6668868997676899999999987498----728996067779999998297577304455658999999986416667
Q ss_pred CEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf 489753202110222101578898999889876411487746999930
Q gi|254780313|r 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF 184 (227)
Q Consensus 137 DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F 184 (227)
.|-..++||..- .++.|...++.||++|.=-+
T Consensus 243 ----~d~~~dCsG~~~------------~~~aai~a~r~gGt~vlvg~ 274 (354)
T KOG0024 243 ----PDVTFDCSGAEV------------TIRAAIKATRSGGTVVLVGM 274 (354)
T ss_pred ----CCEEEECCCCHH------------HHHHHHHHHCCCCEEEEECC
T ss_conf ----986898666046------------68989987512878999654
No 166
>pfam05148 Methyltransf_8 Hypothetical methyltransferase. This family consists of several uncharacterized eukaryotic proteins which are related to methyltransferases pfam01209.
Probab=94.08 E-value=0.53 Score=26.75 Aligned_cols=164 Identities=18% Similarity=0.160 Sum_probs=85.8
Q ss_pred CCCCCCCCCCEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHCCHHHHHH----HHHHHHHHCCCCCCCCEEEEEECCCC
Q ss_conf 89998756541100001464007999996408999999988184479999----99999864583137967888504553
Q gi|254780313|r 4 PPGSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAY----KLLQINEKHQILQSNRRIVDLGSSPG 79 (227)
Q Consensus 4 ~~~~~~~~~~~~~~~~k~~~~ss~~W~~r~~~D~y~~~Ak~~gyrsRaaf----KL~eId~kf~l~k~g~~VlDLGaaPG 79 (227)
.-.+|+=|.+..+..+-. |..=.+.-..||=.-.+=.+|||.--.= =+..|.+..+=..+...|-|+||+-+
T Consensus 4 kL~gsrFR~iNE~LYT~~----s~~a~~~f~~~P~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~lk~~p~~~vIaD~GCGdA 79 (214)
T pfam05148 4 RLDGGRFRMLNEKLYTGK----GSRAGDLFKEDPDAFDLYHEGFNLQVKKWPVNPLDVIIRKLKRRPGNGVIADLGCGEA 79 (214)
T ss_pred HHCCCCHHHHHHHHCCCC----HHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEECCCCHH
T ss_conf 003473027666562797----8999999986969999999999999974897779999999984899718997588657
Q ss_pred HHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHH
Q ss_conf 06899999706878832786411213334698178301122079999999731388748975320211022210157889
Q gi|254780313|r 80 SWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTM 159 (227)
Q Consensus 80 gWsQva~~~~~~~~~~~~VigVDl~~~~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~ 159 (227)
. .|.. +. +.-+|.+.||....+ ..+..||.+.. .-++.+|+++-=.| .-|.-..|
T Consensus 80 ~---lA~~-~~---~~~kV~SfDLva~n~----~Vt~cDi~~~P-------L~d~svDvaVfCLS--LMGTN~~~----- 134 (214)
T pfam05148 80 R---IAFR-KR---EFENVHSFDLVAVNK----RVIPCDMARVP-------LEDESVDVAVFCLS--LMGTNIAD----- 134 (214)
T ss_pred H---HHHH-CC---CCCEEEEEECCCCCC----CCCCCCCCCCC-------CCCCCEEEEEEEHH--HHCCCHHH-----
T ss_conf 9---9986-46---787388513256898----83513533687-------88772636877587--62887799-----
Q ss_pred HHHHHHHHHHHHCCCCCCEEEE-EE---ECCCCHHHHHHHHHHH-CCEE
Q ss_conf 8999889876411487746999-93---0599989999999862-5846
Q gi|254780313|r 160 SLCEAATFFALEMLNIGGDFLV-KT---FQGGTTNDILCLLKKH-FQKV 203 (227)
Q Consensus 160 ~L~~~al~~A~~~Lk~gG~fV~-K~---F~G~~~~~l~~~l~~~-F~~V 203 (227)
-+.-|-++|++||.+.+ -+ | .+..+|++.++.. |+..
T Consensus 135 -----fi~EA~RvLk~~G~L~IAEV~SRf--~~~~~Fv~~~~~~GF~~~ 176 (214)
T pfam05148 135 -----FLKEANRILKNGGLLKIAEVRSRF--PSVGLFERAFTKLGFEVE 176 (214)
T ss_pred -----HHHHHHHHCCCCCEEEEEEEECCC--CCHHHHHHHHHHCCCEEE
T ss_conf -----999987603108789999974016--898999999997597677
No 167
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=94.02 E-value=0.39 Score=27.57 Aligned_cols=96 Identities=23% Similarity=0.296 Sum_probs=68.1
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCH
Q ss_conf 37967888504553068999997068788327864112133346981783011220799999997313887489753202
Q gi|254780313|r 66 QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAY 145 (227)
Q Consensus 66 k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDmap 145 (227)
.+| .|++.| =|-++.||..+-. . +.-|+++|+.+....+|+.++..|++++.. ... ..+|+|-|==.|
T Consensus 13 ~~g-kVvEVG--iG~~~~VA~~L~e-~--g~dv~atDI~~~~a~~g~~~v~DDitnP~~-----~iY-~~A~lIYSiRpp 80 (129)
T COG1255 13 ARG-KVVEVG--IGFFLDVAKRLAE-R--GFDVLATDINEKTAPEGLRFVVDDITNPNI-----SIY-EGADLIYSIRPP 80 (129)
T ss_pred CCC-CEEEEC--CCHHHHHHHHHHH-C--CCCEEEEECCCCCCCCCCEEEECCCCCCCH-----HHH-HCCCCEEECCCC
T ss_conf 588-379981--4117999999997-4--886899852301376553388724779647-----776-270012662798
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCH
Q ss_conf 11022210157889899988987641148774699993059998
Q gi|254780313|r 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT 189 (227)
Q Consensus 146 n~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~ 189 (227)
-+|....+++|..+ |-.+.+|-+.|+..
T Consensus 81 -------------pEl~~~ildva~aV---ga~l~I~pL~Ge~v 108 (129)
T COG1255 81 -------------PELQSAILDVAKAV---GAPLYIKPLTGEPV 108 (129)
T ss_pred -------------HHHHHHHHHHHHHH---CCCEEEEECCCCCC
T ss_conf -------------89989999999860---99789971689977
No 168
>pfam00145 DNA_methylase C-5 cytosine-specific DNA methylase.
Probab=93.95 E-value=0.46 Score=27.11 Aligned_cols=136 Identities=20% Similarity=0.153 Sum_probs=72.8
Q ss_pred CEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCC------CCCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 678885045530689999970687883278641121333------46981783011220799999997313887489753
Q gi|254780313|r 69 RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME------PILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSD 142 (227)
Q Consensus 69 ~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~------~i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSD 142 (227)
++||||-|+.||++.=. +..| .. .+.++|+.+.. ..+. .+.+||++.+..+ + ..+|+++
T Consensus 1 ~~vidlF~G~GG~s~G~-~~aG---~~-~~~a~e~d~~a~~ty~~N~~~--~~~~Di~~~~~~~-----~-~~~Dvl~-- 65 (319)
T pfam00145 1 FKFIDLFAGIGGFRLGL-EQAG---FE-CVAANEIDKSAAKTYEANFPK--VPIGDITLIDIKD-----I-PDIDILT-- 65 (319)
T ss_pred CCEEEECCCCCHHHHHH-HHCC---CE-EEEEEECCHHHHHHHHHHCCC--CCCCCCCCCCHHH-----C-CCCCEEE--
T ss_conf 95899780707899999-9879---92-999983899999999987799--9617754088747-----8-8868898--
Q ss_pred CCHHHCCC-----C-CCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE---E----CCCCHHHHHHHHHHHCCEEEEECCC
Q ss_conf 20211022-----2-10157889899988987641148774699993---0----5999899999998625846997686
Q gi|254780313|r 143 MAYPTIGH-----R-KIDHLRTMSLCEAATFFALEMLNIGGDFLVKT---F----QGGTTNDILCLLKKHFQKVIHVKPV 209 (227)
Q Consensus 143 mapn~SG~-----~-~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~---F----~G~~~~~l~~~l~~~F~~V~~~KP~ 209 (227)
++|.|.|. + ..+..+. .|....+.+. ..++|. .||+-- + .|..+..++..|...=..|....-.
T Consensus 66 ggpPCQ~fS~ag~~~~~~d~r~-~L~~~~~~~v-~~~~Pk-~~v~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~vln 142 (319)
T pfam00145 66 GGFPCQDFSIAGKQKGFEDTRG-TLFFEIIRII-KEKKPK-AFLLENVKGLLSHDNGNTLNVILETLEELGYSVSWKVLN 142 (319)
T ss_pred ECCCCCCCCCCCCCCCCCCCCC-HHHHHHHHHH-HHHCCC-EEEEECCHHHHCCCCHHHHHHHHHHHHHCCCCCCEEECC
T ss_conf 6899987240155688534331-3899999987-751986-887304087864453058999999998679855321077
Q ss_pred CCC---CCCCEE-EEEE
Q ss_conf 657---558249-8983
Q gi|254780313|r 210 ASR---AESVEM-FLLA 222 (227)
Q Consensus 210 aSR---~~S~E~-Ylv~ 222 (227)
|+. +.++|. |+||
T Consensus 143 a~dyGvPQ~R~R~fiig 159 (319)
T pfam00145 143 ASDYGVPQNRERVFIVG 159 (319)
T ss_pred HHHCCCCCCCCEEEEEE
T ss_conf 88808987641899999
No 169
>KOG2671 consensus
Probab=93.84 E-value=0.17 Score=29.77 Aligned_cols=114 Identities=18% Similarity=0.145 Sum_probs=71.3
Q ss_pred HHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCC--CCC------------------CEEEEC
Q ss_conf 986458313796788850455306899999706878832786411213334--698------------------178301
Q gi|254780313|r 58 INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP--ILG------------------VKFFKF 117 (227)
Q Consensus 58 Id~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~--i~g------------------v~~~~g 117 (227)
|....-..+||+.|.|==.+.||++--++. .++.|+|-||.-+.- -.| +..+.+
T Consensus 199 i~AN~Amv~pGdivyDPFVGTGslLvsaa~------FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~ 272 (421)
T KOG2671 199 IMANQAMVKPGDIVYDPFVGTGSLLVSAAH------FGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTA 272 (421)
T ss_pred HHHHHHCCCCCCEEECCCCCCCCEEEEHHH------HCCEEECCCCCHHEEECCCCCCCCHHHHHHHHCCCCHHHHEEEE
T ss_conf 875553067998874476566742666223------06356412453120113457774266768774775320320451
Q ss_pred CCCHHHHHHHHHHHCCCCCCEEEECCC------HHHCC-CC---------------CCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 122079999999731388748975320------21102-22---------------101578898999889876411487
Q gi|254780313|r 118 DFLDLDSWEFIRQAIGGNPDLVLSDMA------YPTIG-HR---------------KIDHLRTMSLCEAATFFALEMLNI 175 (227)
Q Consensus 118 Di~~~~~~~~i~~~l~~~~DlVlSDma------pn~SG-~~---------------~~D~~~~~~L~~~al~~A~~~Lk~ 175 (227)
|++++.-+. +-.+|.|+||-- ...+| .. ...++....|....|.++.+.|.-
T Consensus 273 D~sn~~~rs------n~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ 346 (421)
T KOG2671 273 DFSNPPLRS------NLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVD 346 (421)
T ss_pred CCCCCCHHH------CCEEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 056763010------32333787279811456666541457655752124335577644667999975088763766302
Q ss_pred CCEEEEEE
Q ss_conf 74699993
Q gi|254780313|r 176 GGDFLVKT 183 (227)
Q Consensus 176 gG~fV~K~ 183 (227)
||-+|+=+
T Consensus 347 ggrlv~w~ 354 (421)
T KOG2671 347 GGRLVFWL 354 (421)
T ss_pred CCEEEEEC
T ss_conf 85589834
No 170
>pfam05206 TRM13 Methyltransferase TRM13. This is a family of eukaryotic proteins which are responsible for 2'-O-methylation of tRNA at position 4. TRM13 shows no sequence similarity to other known methyltransferases.
Probab=93.64 E-value=0.5 Score=26.88 Aligned_cols=101 Identities=24% Similarity=0.323 Sum_probs=60.7
Q ss_pred HHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCC-CCEEEEEECCCC----C------CCCCCCEEEECCCCHHH
Q ss_conf 999986458313796788850455306899999706878-832786411213----3------34698178301122079
Q gi|254780313|r 55 LLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA-NNTRVVAIDILD----M------EPILGVKFFKFDFLDLD 123 (227)
Q Consensus 55 L~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~-~~~~VigVDl~~----~------~~i~gv~~~~gDi~~~~ 123 (227)
|+..-++.+++.+...+|+.||+-|..|.++.+...... ....++-||-.. + ++.+-+.-++.||.|.+
T Consensus 6 lig~le~~~ll~~~~~~vEfGAGrG~LS~~v~~~l~~~~~~~~~~~LIDR~s~R~K~D~k~r~~~~~~~~R~riDI~DL~ 85 (256)
T pfam05206 6 LIGNLEELGLLSPSTAYVEFGAGKGELSRYLNQCLLEDQLSNPGFVLIDRASNRLKADRKIRKDESPPIKRLRIDIKDLN 85 (256)
T ss_pred HHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHCCCCCCEEEEEEEHHHCC
T ss_conf 99999973998999889997896469999999985234566763899988887754311021378882589995325457
Q ss_pred HHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999973138874897532021102221015788989998898764114
Q gi|254780313|r 124 SWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173 (227)
Q Consensus 124 ~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~L 173 (227)
. ..+........-++ .+-.||-.|.++++++|
T Consensus 86 L-~~v~~~~~~~~~va-----------------i~KHLCG~ATDLtLrcl 117 (256)
T pfam05206 86 L-DKLLSLLKGKPVVA-----------------VSKHLCGAATDLTLRCL 117 (256)
T ss_pred H-HHHHHHCCCCCEEE-----------------EECCCCCCHHHHHHHHH
T ss_conf 7-66443106797799-----------------94113663475999987
No 171
>KOG2360 consensus
Probab=93.49 E-value=0.049 Score=33.19 Aligned_cols=147 Identities=16% Similarity=0.117 Sum_probs=80.9
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC-----------CCCCCCCEEEECCCCHHHHHHHHHHHCCCC
Q ss_conf 796788850455306899999706878832786411213-----------334698178301122079999999731388
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-----------MEPILGVKFFKFDFLDLDSWEFIRQAIGGN 135 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~-----------~~~i~gv~~~~gDi~~~~~~~~i~~~l~~~ 135 (227)
+|..|+|.|||||-=+--++....+ .|+|.|+|+.. +.-...+....||++..-+.+. + ..
T Consensus 213 ~g~~v~d~caapg~KTsH~a~i~~n---~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t~~~~~----~-~~ 284 (413)
T KOG2360 213 PGSRVIDTCAAPGNKTSHLAAIMRN---QGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNTATPEK----F-RD 284 (413)
T ss_pred CCCCEEEECCCCCCCHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC----C-CC
T ss_conf 9882355414665321129988622---48721323416889999999987178745320144447778100----2-65
Q ss_pred CCEEEECCCHHHCCC--CC---C-------HHHHHHHHHH---HHHHHHHHCC--CCCCEEEEEEECCCCHHHHHHHHHH
Q ss_conf 748975320211022--21---0-------1578898999---8898764114--8774699993059998999999986
Q gi|254780313|r 136 PDLVLSDMAYPTIGH--RK---I-------DHLRTMSLCE---AATFFALEML--NIGGDFLVKTFQGGTTNDILCLLKK 198 (227)
Q Consensus 136 ~DlVlSDmapn~SG~--~~---~-------D~~~~~~L~~---~al~~A~~~L--k~gG~fV~K~F~G~~~~~l~~~l~~ 198 (227)
+.-+|.| |.+||- .. . +..+...|+- .++..|..+- +.=-.-.|-+.+++.++-....+..
T Consensus 285 v~~iL~D--pscSgSgm~~r~~~~~~~e~~~~~rL~~L~~fq~~~~~hal~fp~~k~vvystcs~~reene~vv~d~l~~ 362 (413)
T KOG2360 285 VTYILVD--PSCSGSGMVSRQDEDPGAETESPERLENLQSFQIRILKHALTFPNLKRLVYSTCSLHREENEQVVQEVLQQ 362 (413)
T ss_pred EEEEEEC--CCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHEEEECCHHHHHHHHHHHHHHHHH
T ss_conf 0599857--98787765223242267775357999987877999999886077532401102325454415999998751
Q ss_pred H--CCEEEE--ECCCCCCCCCCEEEEEECC
Q ss_conf 2--584699--7686657558249898307
Q gi|254780313|r 199 H--FQKVIH--VKPVASRAESVEMFLLAKG 224 (227)
Q Consensus 199 ~--F~~V~~--~KP~aSR~~S~E~Ylv~~g 224 (227)
. +..+.. +-|...+-. .|.|-++.+
T Consensus 363 ~p~~~~l~~kK~~p~w~~rg-~~~~~~~e~ 391 (413)
T KOG2360 363 NPDAKRLAPKKVLPAWPHRG-LSTFSGAEH 391 (413)
T ss_pred CHHHHHHHHHHCCHHHHHCC-CCCCCCCCC
T ss_conf 81776633343233455347-754542113
No 172
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=93.00 E-value=0.8 Score=25.61 Aligned_cols=138 Identities=20% Similarity=0.182 Sum_probs=76.6
Q ss_pred CEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCC------CCCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 678885045530689999970687883278641121333------46981783011220799999997313887489753
Q gi|254780313|r 69 RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME------PILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSD 142 (227)
Q Consensus 69 ~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~------~i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSD 142 (227)
.+||||-|+.||++.=. +..| . -.+.++|+.+-. ..++ ..+.+||.+.+..+ +.+.+|+++.
T Consensus 1 l~v~dLFsG~GG~s~Gl-~~aG---~-~~~~a~e~d~~a~~t~~~N~~~-~~~~~Di~~~~~~~-----~~~~vDll~g- 68 (275)
T cd00315 1 LRVIDLFAGIGGFRLGL-EKAG---F-EIVAANEIDKSAAETYEANFPN-KLIEGDITKIDEKD-----FIPDIDLLTG- 68 (275)
T ss_pred CCEEEECCCCCHHHHHH-HHCC---C-EEEEEEECCHHHHHHHHHHCCC-CCCCCCHHHCCCCC-----CCCCCCEEEE-
T ss_conf 95999767807899999-9869---9-8999996899999999988799-95258864465321-----3788788986-
Q ss_pred CCHHHCCCC------CCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE-------EECCCCHHHHHHHHHHHCCEEEEECCC
Q ss_conf 202110222------1015788989998898764114877469999-------305999899999998625846997686
Q gi|254780313|r 143 MAYPTIGHR------KIDHLRTMSLCEAATFFALEMLNIGGDFLVK-------TFQGGTTNDILCLLKKHFQKVIHVKPV 209 (227)
Q Consensus 143 mapn~SG~~------~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K-------~F~G~~~~~l~~~l~~~F~~V~~~KP~ 209 (227)
+|.|.|.. ..+..+. .|....+.+. ..++|. .|++- .-.+..+..++..+...-..+....-.
T Consensus 69 -gpPCQ~fS~ag~~~~~~d~r~-~L~~~~~~~i-~~~~P~-~~~~ENV~~~~~~~~~~~~~~i~~~l~~~GY~~~~~vl~ 144 (275)
T cd00315 69 -GFPCQPFSIAGKRKGFEDTRG-TLFFEIIRIL-KEKKPK-YFLLENVKGLLTHDNGNTLKVILNTLEELGYNVYWKLLN 144 (275)
T ss_pred -CCCCCCCCCCCCCCCCCCCCC-HHHHHHHHHH-HHHCCC-EEEHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEEEEC
T ss_conf -899987354786388656401-6899999999-876885-882763766875235607899999998679820277867
Q ss_pred CCC---CCCCE-EEEEE
Q ss_conf 657---55824-98983
Q gi|254780313|r 210 ASR---AESVE-MFLLA 222 (227)
Q Consensus 210 aSR---~~S~E-~Ylv~ 222 (227)
|+. +.+++ +|+||
T Consensus 145 a~~~GvPQ~R~R~fiva 161 (275)
T cd00315 145 ASDYGVPQNRERVFIIG 161 (275)
T ss_pred HHHCCCCCCCCEEEEEE
T ss_conf 99979997761899998
No 173
>pfam06962 rRNA_methylase Putative rRNA methylase. This family contains a number of putative rRNA methylases. Note that many family members are hypothetical proteins.
Probab=92.75 E-value=0.86 Score=25.40 Aligned_cols=83 Identities=23% Similarity=0.216 Sum_probs=52.5
Q ss_pred EEEECCCCC------------CCCCCCEEEECCCCHHHHHHHHHHHCC-CCCCEEEECCCHHHCCCCCCHHHHHHHHHHH
Q ss_conf 864112133------------346981783011220799999997313-8874897532021102221015788989998
Q gi|254780313|r 98 VVAIDILDM------------EPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEA 164 (227)
Q Consensus 98 VigVDl~~~------------~~i~gv~~~~gDi~~~~~~~~i~~~l~-~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~ 164 (227)
|+|+|+|+- ....+|.+++.+ ++.+.+++. +++|+++=-.+-=-.|.+.+-.. -+=...
T Consensus 2 V~aFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~~------He~l~~~v~~~~i~~~~FNLGYLPggDk~i~T~--~~tTi~ 73 (140)
T pfam06962 2 VYAFDIQEEALENTKEKLEQAGLSEIVELILDS------HENIDEYIPEGPVKAAIFNLGYLPGGDKSITTK--PDTTLE 73 (140)
T ss_pred EEEEECHHHHHHHHHHHHHHCCCCCCEEEEECC------HHHHHHHCCCCCCCEEEEECCCCCCCCCCCEEC--CHHHHH
T ss_conf 579960999999999999965987568999779------888986376467668999667688999875877--720999
Q ss_pred HHHHHHHCCCCCCEEEEEEECCCC
Q ss_conf 898764114877469999305999
Q gi|254780313|r 165 ATFFALEMLNIGGDFLVKTFQGGT 188 (227)
Q Consensus 165 al~~A~~~Lk~gG~fV~K~F~G~~ 188 (227)
||+-|+..|++||-+++=++.|.+
T Consensus 74 Al~~al~lL~~gG~i~i~~Y~GH~ 97 (140)
T pfam06962 74 AIKKLLELLKPGGLIILVIYHGHE 97 (140)
T ss_pred HHHHHHHHHCCCCEEEEEEECCCC
T ss_conf 999999963669899999979999
No 174
>KOG1661 consensus
Probab=92.71 E-value=0.04 Score=33.78 Aligned_cols=140 Identities=24% Similarity=0.279 Sum_probs=70.0
Q ss_pred CCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCC-CCEEEECCCCHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 831379678885045530689999970687883278641121333469-8178301122079999999731388748975
Q gi|254780313|r 63 QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPIL-GVKFFKFDFLDLDSWEFIRQAIGGNPDLVLS 141 (227)
Q Consensus 63 ~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~i~-gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlS 141 (227)
..++||.+.||+|++-|--|--....++.+|. .++|||+.+- -++ -...+.-||++.+....+. .+..-+|+-
T Consensus 78 ~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~--~~~GIEh~~e-LVe~Sk~nl~k~i~~~e~~~~~~---~~~l~ivvG 151 (237)
T KOG1661 78 DHLQPGASFLDVGSGSGYLTACFARMVGATGG--NVHGIEHIPE-LVEYSKKNLDKDITTSESSSKLK---RGELSIVVG 151 (237)
T ss_pred HHHCCCCCEEECCCCCCHHHHHHHHHHCCCCC--CCCCHHHHHH-HHHHHHHHHHHHCCCCHHHHHHC---CCCEEEEEC
T ss_conf 86234731013378740899999999457776--6514441599-99999987776504730455641---486479967
Q ss_pred CCCHHHCCCCCCHH----HHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHH---------HHHHHHHCCEEEEECC
Q ss_conf 32021102221015----7889899988987641148774699993059998999---------9999862584699768
Q gi|254780313|r 142 DMAYPTIGHRKIDH----LRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI---------LCLLKKHFQKVIHVKP 208 (227)
Q Consensus 142 Dmapn~SG~~~~D~----~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l---------~~~l~~~F~~V~~~KP 208 (227)
|+-.-.+-..-.|. +..-++ ..-....|++||-+|+=+-+-..++.+ ...++..|. |. +-|
T Consensus 152 Dgr~g~~e~a~YDaIhvGAaa~~~----pq~l~dqL~~gGrllip~~~~~~~q~~~~~dk~~~gki~~~~~f~-v~-yvP 225 (237)
T KOG1661 152 DGRKGYAEQAPYDAIHVGAAASEL----PQELLDQLKPGGRLLIPVGQDGGTQYLRQIDKNEDGKIKLRTLFS-VR-YVP 225 (237)
T ss_pred CCCCCCCCCCCCCEEEECCCCCCC----HHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCCCCEEEEEEEC-EE-EEE
T ss_conf 762347756876657876676224----799998634387289861146730677760454567402357501-27-886
Q ss_pred CCCCCC
Q ss_conf 665755
Q gi|254780313|r 209 VASRAE 214 (227)
Q Consensus 209 ~aSR~~ 214 (227)
..||.+
T Consensus 226 lt~~~~ 231 (237)
T KOG1661 226 LTSRES 231 (237)
T ss_pred CCCCCC
T ss_conf 666555
No 175
>KOG1541 consensus
Probab=92.44 E-value=0.62 Score=26.32 Aligned_cols=137 Identities=16% Similarity=0.159 Sum_probs=67.0
Q ss_pred CCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC-C------CCCCCCEEEECCCCHHHHHHHHHHHCCCCCCEEE
Q ss_conf 96788850455306899999706878832786411213-3------3469817830112207999999973138874897
Q gi|254780313|r 68 NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-M------EPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVL 140 (227)
Q Consensus 68 g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~-~------~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVl 140 (227)
..-+||+||+.|==.++..+ .| -..+|||+.| | ..++ -.++.+|+... ..+-.|.||-||
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~----~G--h~wiGvDiSpsML~~a~~~e~e-gdlil~DMG~G------lpfrpGtFDg~I 117 (270)
T KOG1541 51 SGLILDIGCGSGLSGSVLSD----SG--HQWIGVDISPSMLEQAVERELE-GDLILCDMGEG------LPFRPGTFDGVI 117 (270)
T ss_pred CCEEEEECCCCCCCHHEECC----CC--CEEEEECCCHHHHHHHHHHHHH-CCEEEEECCCC------CCCCCCCCCEEE
T ss_conf 71799834577743200216----89--5588622898999999976640-47663124788------788997412478
Q ss_pred ECCCHHHC--CCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCH-HHH--HHHHHHHCCE-EEEECCCCCCCC
Q ss_conf 53202110--22210157889899988987641148774699993059998-999--9999862584-699768665755
Q gi|254780313|r 141 SDMAYPTI--GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT-NDI--LCLLKKHFQK-VIHVKPVASRAE 214 (227)
Q Consensus 141 SDmapn~S--G~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~-~~l--~~~l~~~F~~-V~~~KP~aSR~~ 214 (227)
|=-|..-- -+++.++.+.--++. ..-...+|+.|+.+|.-++--.+. .+. -..++.-|.- +.+--|.+.|.
T Consensus 118 SISAvQWLcnA~~s~~~P~~Rl~~F--F~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~aGF~GGlvVd~Pes~k~- 194 (270)
T KOG1541 118 SISAVQWLCNADKSLHVPKKRLLRF--FGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKAGFGGGLVVDWPESTKN- 194 (270)
T ss_pred EEEEEEEECCCCCCCCCHHHHHHHH--HHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCC-
T ss_conf 8620321014684446738999998--6645321036861588852454679999999988613478436646110134-
Q ss_pred CCEEEEE
Q ss_conf 8249898
Q gi|254780313|r 215 SVEMFLL 221 (227)
Q Consensus 215 S~E~Ylv 221 (227)
...|+|
T Consensus 195 -kK~yLV 200 (270)
T KOG1541 195 -KKYYLV 200 (270)
T ss_pred -CEEEEE
T ss_conf -305899
No 176
>pfam05185 PRMT5 PRMT5 arginine-N-methyltransferase. The human homologue of yeast Skb1 (Shk1 kinase-binding protein 1) is PRMT5, an arginine-N-methyltransferase. These proteins appear to be key mitotic regulators. They play a role in Jak signalling in higher eukaryotes.
Probab=92.41 E-value=0.39 Score=27.53 Aligned_cols=99 Identities=14% Similarity=0.135 Sum_probs=62.3
Q ss_pred CEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC--------C-CC--C-CCCEEEECCCCHHHHHHHHHHHCCCCC
Q ss_conf 6788850455306899999706878832786411213--------3-34--6-981783011220799999997313887
Q gi|254780313|r 69 RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD--------M-EP--I-LGVKFFKFDFLDLDSWEFIRQAIGGNP 136 (227)
Q Consensus 69 ~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~--------~-~~--i-~gv~~~~gDi~~~~~~~~i~~~l~~~~ 136 (227)
-.|+=+||+-|.--+-+.+-....+.+.+|+||.=.| . .. = ..|+.+.+|+.+-+ ...++
T Consensus 188 ~vI~VvGAGRGPLV~~~l~A~~~~~~~v~i~AVEKNpnA~vtL~~r~n~~~W~~~V~ii~~DMR~w~--------~p~k~ 259 (447)
T pfam05185 188 LVILVVGAGRGPLVDRALRAAEETGRKVKIYAVEKNPNAVVTLQKRVNFEEWGDKVTLISSDMREWK--------GPEKA 259 (447)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCHHCCC--------CCCCC
T ss_conf 6999985896489999999999819966999995687799999998505431780699908000579--------98773
Q ss_pred CEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf 489753202110222101578898999889876411487746999930
Q gi|254780313|r 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF 184 (227)
Q Consensus 137 DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F 184 (227)
|+|+|..-=. ..-.||+=.+|+-|.++|++.|.++=--+
T Consensus 260 Di~VSELLGS---------FGDNELSPECLdg~q~~lk~~gIsIP~sY 298 (447)
T pfam05185 260 DILVSELLGS---------FGDNELSPECLDGAQRFLKPDGISIPQSY 298 (447)
T ss_pred CEEEEECCCC---------CCCCCCCHHHHHHHHHHCCCCCEEECHHH
T ss_conf 5897521166---------66655797787789974689846826213
No 177
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=92.34 E-value=0.77 Score=25.70 Aligned_cols=35 Identities=20% Similarity=0.370 Sum_probs=29.8
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEEC
Q ss_conf 13796788850455306899999706878832786411
Q gi|254780313|r 65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID 102 (227)
Q Consensus 65 ~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVD 102 (227)
++||++|+||=-+-|-||...+..++++| .|.++-
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G---~Vy~~~ 80 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKG---KVYAYV 80 (238)
T ss_pred CCCCCEEEEEECCCCCHHHHHCHHCCCCE---EEEEEC
T ss_conf 68998799983488507444110028750---598856
No 178
>PRK09422 alcohol dehydrogenase; Provisional
Probab=92.27 E-value=1 Score=25.01 Aligned_cols=112 Identities=18% Similarity=0.186 Sum_probs=55.4
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCC----CCCCCEEEECCCCH
Q ss_conf 84479999999998645831379678885045530689999970687883278641121333----46981783011220
Q gi|254780313|r 46 GWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME----PILGVKFFKFDFLD 121 (227)
Q Consensus 46 gyrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~----~i~gv~~~~gDi~~ 121 (227)
.--.=.+|..++. .-+++|++||=.|+++.|-. +.+..... ...+|+++|..+-. .--|+..+-..-..
T Consensus 145 ~~~~~t~~~al~~----~~~~~G~~VlV~GaGgvG~~--aiq~ak~~-~g~~Vi~~~~~~~k~~~a~~lGad~vi~~~~~ 217 (338)
T PRK09422 145 TCAGVTTYKAIKV----SGIKPGQWIAIYGAGGLGNL--ALQYAKNV-FNAKVIAVDINDDKLALAKEVGADLTINSKRV 217 (338)
T ss_pred CHHHHHHHHHHHH----HCCCCCCEEEEECCCHHHHH--HHHHHHHH-CCCEEEEEECCHHHHHHHHHCCCCEEECCCCC
T ss_conf 3046768899998----48999988999688689999--99999980-89869999899999999997299899818874
Q ss_pred HHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 7999999973138874897532021102221015788989998898764114877469999
Q gi|254780313|r 122 LDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK 182 (227)
Q Consensus 122 ~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K 182 (227)
.+..+.+.... +.+|.++-|.. + ..++.-+...|++||++|+=
T Consensus 218 ~~~~~~~~~~~-gg~~~~v~~~~----~-------------~~~~~~~~~~l~~gG~~v~v 260 (338)
T PRK09422 218 EDVAKIIQEKT-GGAHAAVVTAV----A-------------KAAFNQAVDAVRAGGRVVAV 260 (338)
T ss_pred CCHHHHHHHHC-CCCCEEEEECC----C-------------HHHHHHHHHHHHCCCEEEEE
T ss_conf 34999999950-99776999678----7-------------89999999981169999998
No 179
>PRK10083 putative dehydrogenase; Provisional
Probab=92.11 E-value=0.72 Score=25.89 Aligned_cols=99 Identities=17% Similarity=0.210 Sum_probs=53.9
Q ss_pred CCCCCEEEEEECCCCHHH--HHHHHHHCCCCCCEEEEEECCCCCC----CCCCCEEEECCCCHHHHHHHHHHHCCCCCCE
Q ss_conf 137967888504553068--9999970687883278641121333----4698178301122079999999731388748
Q gi|254780313|r 65 LQSNRRIVDLGSSPGSWS--QVAARITGSNANNTRVVAIDILDME----PILGVKFFKFDFLDLDSWEFIRQAIGGNPDL 138 (227)
Q Consensus 65 ~k~g~~VlDLGaaPGgWs--Qva~~~~~~~~~~~~VigVDl~~~~----~i~gv~~~~gDi~~~~~~~~i~~~l~~~~Dl 138 (227)
+++|++||=+|++|-|-+ |.+....+ ...|+++|..+-. .--|+..+- |-.+.+..+.+.. .+..+|+
T Consensus 158 ~~~g~~VlV~G~G~iGl~~~~~~~~~~g----a~~Vi~~d~~~~rl~~A~~~GAd~vi-~~~~~~~~~~~~~-~G~~~dv 231 (339)
T PRK10083 158 PTEQDVALIYGAGPVGLTIVQVLKGVYG----VKNVIVADRIDERLALAKESGADWVI-NNAQESLAEALAE-KGVKPTL 231 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHCC----CCEEEEECCCHHHHHHHHHCCCCEEE-CCCCCCHHHHHHH-CCCCCCE
T ss_conf 9999889995876599999999998569----97899937989999999971998998-4887669999985-3999619
Q ss_pred EEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECC
Q ss_conf 975320211022210157889899988987641148774699993059
Q gi|254780313|r 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG 186 (227)
Q Consensus 139 VlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G 186 (227)
|+ | ++|.. .++..|..++++||.+++==+.+
T Consensus 232 vi-d----~~g~~------------~~~~~a~~~~~~gG~iv~~G~~~ 262 (339)
T PRK10083 232 IF-D----AACHP------------SILEEAVTLASPAARIVLMGFSS 262 (339)
T ss_pred EE-E----CCCCH------------HHHHHHHHHHHCCEEEEEEECCC
T ss_conf 99-6----66688------------99999999851880999992589
No 180
>PRK04148 hypothetical protein; Provisional
Probab=92.10 E-value=0.73 Score=25.88 Aligned_cols=104 Identities=23% Similarity=0.268 Sum_probs=70.0
Q ss_pred HHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCC----CCCCCEEEECCCCHHHHHHHHHHHCC
Q ss_conf 98645831379678885045530689999970687883278641121333----46981783011220799999997313
Q gi|254780313|r 58 INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME----PILGVKFFKFDFLDLDSWEFIRQAIG 133 (227)
Q Consensus 58 Id~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~----~i~gv~~~~gDi~~~~~~~~i~~~l~ 133 (227)
|.+.|.-. ++..|+++| =|....+|..+-. . +..|+++|+.+.. ...|+.++..|+++++.. ..
T Consensus 8 I~~~y~~~-~~~kIvEvG--IGf~~~vA~~L~e-~--g~dv~~~Din~~aV~~a~~~Gl~~v~DDif~P~l~-----iY- 75 (135)
T PRK04148 8 IARNYPHL-KNGKIAELG--IGFYFKVAKKLKE-S--GFDVIVIDINKKAVEKAKKLGLNAFVDDIFNPNLE-----IY- 75 (135)
T ss_pred HHHHCCCC-CCCEEEEEE--CCCCHHHHHHHHH-C--CCCEEEEECCHHHHHHHHHCCCCEEECCCCCCCHH-----HH-
T ss_conf 99854211-287389992--3666789999987-4--99889995765543221232876375158899888-----85-
Q ss_pred CCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCH
Q ss_conf 88748975320211022210157889899988987641148774699993059998
Q gi|254780313|r 134 GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT 189 (227)
Q Consensus 134 ~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~ 189 (227)
..+|+|-|==-| -+|....+++|.++ |..+++|-|.|+..
T Consensus 76 ~~a~lIYSIRPp-------------~Elq~~il~lakkv---~~dliI~PL~~E~~ 115 (135)
T PRK04148 76 KNAKLIYSIRPP-------------RDLQPFILELAKKL---NCPLYIKPLSGEEP 115 (135)
T ss_pred CCCCEEEEECCC-------------HHHHHHHHHHHHHC---CCCEEEECCCCCCC
T ss_conf 178879981898-------------78889999999975---99899970788876
No 181
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=91.52 E-value=1.2 Score=24.49 Aligned_cols=126 Identities=15% Similarity=0.207 Sum_probs=61.8
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCH--HHH--HHHHHHCCCCCCEEEEEECCCC---------------CC
Q ss_conf 4479999999998645831379678885045530--689--9999706878832786411213---------------33
Q gi|254780313|r 47 WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS--WSQ--VAARITGSNANNTRVVAIDILD---------------ME 107 (227)
Q Consensus 47 yrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGg--WsQ--va~~~~~~~~~~~~VigVDl~~---------------~~ 107 (227)
||-+..|.+++=..+- -...-+|.--||+-|- ||- .+.+..+....+.+|+|.||.+ +.
T Consensus 97 FRe~~~F~~L~~~~~~--~~~~lRIWSAgCSTGEEpYSiAm~l~E~~~~~~~~~~I~aTDIs~~~L~~Ar~GiY~~~~~~ 174 (287)
T PRK10611 97 FREAHHFPLLAEHARR--RSGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRLEELK 174 (287)
T ss_pred ECCCHHHHHHHHHHHH--CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHCCCCCHHHHH
T ss_conf 4583787999999984--58975899767788723999999999973237777079999798889999980898889984
Q ss_pred CCC----CCEEEECC--C-----CHHHHHHHH--------HH--HCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 469----81783011--2-----207999999--------97--313887489753202110222101578898999889
Q gi|254780313|r 108 PIL----GVKFFKFD--F-----LDLDSWEFI--------RQ--AIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAAT 166 (227)
Q Consensus 108 ~i~----gv~~~~gD--i-----~~~~~~~~i--------~~--~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al 166 (227)
.++ .-.|.+++ . ..++....+ .. ...+++|+|.|= |+-- ..|.. .-..++
T Consensus 175 ~~p~~~~~ryF~~~~~~~~g~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fDlIfCR---NVlI--YFd~~----~q~~vl 245 (287)
T PRK10611 175 TLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQSLNLLAKQYTVPGPFDAIFCR---NVMI--YFDKT----TQQEIL 245 (287)
T ss_pred CCCHHHHHHHEECCCCCCCCEEEECHHHHCCCEEEHHHCCCCCCCCCCCCEEEEEC---CCCC--CCCHH----HHHHHH
T ss_conf 59999995116415787666187457876307771400679988888995199978---4053--67899----999999
Q ss_pred HHHHHCCCCCCEEEEEE
Q ss_conf 87641148774699993
Q gi|254780313|r 167 FFALEMLNIGGDFLVKT 183 (227)
Q Consensus 167 ~~A~~~Lk~gG~fV~K~ 183 (227)
..-...|+|||-+++=-
T Consensus 246 ~~~~~~L~pgG~L~lG~ 262 (287)
T PRK10611 246 RRFVPLLKPDGLLFAGH 262 (287)
T ss_pred HHHHHHHCCCCEEEEEC
T ss_conf 99999868992899838
No 182
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=91.32 E-value=0.85 Score=25.44 Aligned_cols=113 Identities=13% Similarity=0.099 Sum_probs=64.9
Q ss_pred CCCCCC--CEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------C--CCCCCCEEEECCCCHHHHHHHHH
Q ss_conf 831379--6788850455306899999706878832786411213---------3--34698178301122079999999
Q gi|254780313|r 63 QILQSN--RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------M--EPILGVKFFKFDFLDLDSWEFIR 129 (227)
Q Consensus 63 ~l~k~g--~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~--~~i~gv~~~~gDi~~~~~~~~i~ 129 (227)
.+|... -.+||+||+=|.|+--.++..+.. ..+||++.. + ..++|+..+.+|.... +.
T Consensus 42 ~~f~~~~~pi~lEIGfG~G~~l~~~A~~nP~~----nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~-----l~ 112 (227)
T COG0220 42 ALFGNNNAPIVLEIGFGMGEFLVEMAKKNPEK----NFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEV-----LD 112 (227)
T ss_pred HHHCCCCCCEEEEECCCCCHHHHHHHHHCCCC----CEEEEEEEHHHHHHHHHHHHHCCCCCEEEEECCHHHH-----HH
T ss_conf 98388889669996888987899999878987----7899997348999999999982998469980779999-----97
Q ss_pred HHCCC-C---CCEEEECCCHHHCCCCCCHHH-HHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHH
Q ss_conf 73138-8---748975320211022210157-88989998898764114877469999305999899
Q gi|254780313|r 130 QAIGG-N---PDLVLSDMAYPTIGHRKIDHL-RTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191 (227)
Q Consensus 130 ~~l~~-~---~DlVlSDmapn~SG~~~~D~~-~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~ 191 (227)
.+..+ . ..+--+|==|.. .-|- |.++ ..-|......|++||.+-+++=.-..++.
T Consensus 113 ~~~~~~sl~~I~i~FPDPWpKk-----RH~KRRl~~--~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~ 172 (227)
T COG0220 113 YLIPDGSLDKIYINFPDPWPKK-----RHHKRRLTQ--PEFLKLYARKLKPGGVLHFATDNEEYFEW 172 (227)
T ss_pred HCCCCCCEEEEEEECCCCCCCC-----CCCCCCCCC--HHHHHHHHHHCCCCCEEEEEECCHHHHHH
T ss_conf 3589885657999799999876-----643321478--89999999972689789997267999999
No 183
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA; InterPro: IPR001566 This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA .; GO: 0003723 RNA binding, 0008173 RNA methyltransferase activity, 0006396 RNA processing.
Probab=91.30 E-value=0.35 Score=27.84 Aligned_cols=85 Identities=25% Similarity=0.324 Sum_probs=59.3
Q ss_pred HHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC-----------CCCCCCCEEEECCCCHH
Q ss_conf 9999986458313796788850455306899999706878832786411213-----------33469817830112207
Q gi|254780313|r 54 KLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-----------MEPILGVKFFKFDFLDL 122 (227)
Q Consensus 54 KL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~-----------~~~i~gv~~~~gDi~~~ 122 (227)
+|..=-.++==+.+.+.|||+=|+=|-+|-.+++.+. .|+|||+.+ ..-+.||+|++|++.+.
T Consensus 281 ~l~~~a~~~l~Lqg~e~V~DayCG~GtftLpLA~qak------~v~G~E~v~e~v~~a~~NAe~Ng~~N~~F~~g~~E~~ 354 (434)
T TIGR00479 281 KLVDRALEALELQGEEKVVDAYCGVGTFTLPLAKQAK------SVVGVEVVPESVEDAKRNAELNGIANVEFLAGTLETV 354 (434)
T ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCC------EEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 9999999997159865578631575520044440121------8888714376789998888860353201333123211
Q ss_pred HHHHHHHHHCCCCCCEEEECCCHHHCC
Q ss_conf 999999973138874897532021102
Q gi|254780313|r 123 DSWEFIRQAIGGNPDLVLSDMAYPTIG 149 (227)
Q Consensus 123 ~~~~~i~~~l~~~~DlVlSDmapn~SG 149 (227)
.-+... -+..+|+||=| |.-+|
T Consensus 355 --~p~~~~-e~~~~D~~llD--PPR~G 376 (434)
T TIGR00479 355 --LPKQPW-EGISPDVVLLD--PPRKG 376 (434)
T ss_pred --CCCCCC-CCCCCCEEEEC--CCCCC
T ss_conf --014422-26778988888--88987
No 184
>KOG3191 consensus
Probab=91.18 E-value=1.3 Score=24.28 Aligned_cols=145 Identities=19% Similarity=0.205 Sum_probs=81.5
Q ss_pred CCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCC--------CC--CCEEEECCCCHHHHHHHHHHHCCCCCC
Q ss_conf 96788850455306899999706878832786411213334--------69--817830112207999999973138874
Q gi|254780313|r 68 NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP--------IL--GVKFFKFDFLDLDSWEFIRQAIGGNPD 137 (227)
Q Consensus 68 g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~--------i~--gv~~~~gDi~~~~~~~~i~~~l~~~~D 137 (227)
-..++++||+-|--|...++.+++ +...++.||+|..- .. ++..++.|+.+. |+. +++|
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~---~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~-----l~~---~~VD 112 (209)
T KOG3191 44 PEICLEIGCGSGVVSTFLASVIGP---QALYLATDINPEALEATLETARCNRVHIDVVRTDLLSG-----LRN---ESVD 112 (209)
T ss_pred CEEEEEECCCCCHHHHHHHHHCCC---CCEEEEECCCHHHHHHHHHHHHHCCCCCCEEEHHHHHH-----HCC---CCCC
T ss_conf 605899348846599999974177---71699954998999887999985577520565257766-----332---7730
Q ss_pred EEEECCCH-HHCCCCCCHHHHH---------HHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHCCEEEEEC
Q ss_conf 89753202-1102221015788---------9899988987641148774699993059998999999986258469976
Q gi|254780313|r 138 LVLSDMAY-PTIGHRKIDHLRT---------MSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207 (227)
Q Consensus 138 lVlSDmap-n~SG~~~~D~~~~---------~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~~~F~~V~~~K 207 (227)
+++=.=-- .++-....|+... .+.....+......|.|.|.|.+=......-+++++.++..=-.+.++
T Consensus 113 vLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~g~~~~~~- 191 (209)
T KOG3191 113 VLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKKGYGVRIA- 191 (209)
T ss_pred EEEECCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEHHHCCHHHHHHHHHHCCCCEEEE-
T ss_conf 8997899676985442067788887457541789998876404442867437763013059799999874336530688-
Q ss_pred CCCCCCCCCEEEEEECCCC
Q ss_conf 8665755824989830755
Q gi|254780313|r 208 PVASRAESVEMFLLAKGFR 226 (227)
Q Consensus 208 P~aSR~~S~E~Ylv~~gfK 226 (227)
-.|+.+.|.-.|-+..|
T Consensus 192 --~~Rk~~~E~l~ilkf~r 208 (209)
T KOG3191 192 --MQRKAGGETLSILKFTR 208 (209)
T ss_pred --EEEECCCCEEEEEEEEE
T ss_conf --88744774278999985
No 185
>TIGR00182 plsX fatty acid/phospholipid synthesis protein PlsX; InterPro: IPR003664 The plsX gene is part of the bacterial fab gene cluster which encodes several key fatty acid biosynthetic enzymes . The plsX gene encodes a poorly understood enzyme of phospholipid metabolism .; GO: 0003824 catalytic activity, 0006633 fatty acid biosynthetic process.
Probab=91.05 E-value=0.45 Score=27.20 Aligned_cols=73 Identities=23% Similarity=0.391 Sum_probs=39.3
Q ss_pred CCEEEEEECC----CCHHHHHHHHHHCCCCCCEEEEEEC-----CCCCCCCCCCEEEECCCCHHHHHHHHH---------
Q ss_conf 9678885045----5306899999706878832786411-----213334698178301122079999999---------
Q gi|254780313|r 68 NRRIVDLGSS----PGSWSQVAARITGSNANNTRVVAID-----ILDMEPILGVKFFKFDFLDLDSWEFIR--------- 129 (227)
Q Consensus 68 g~~VlDLGaa----PGgWsQva~~~~~~~~~~~~VigVD-----l~~~~~i~gv~~~~gDi~~~~~~~~i~--------- 129 (227)
...+||+||- |=--.|||. +|.- .--.|+++| |+.+ |-.-.+|.-...++++.++
T Consensus 138 ~~~~LDvGAN~dc~p~~L~~fAl--MG~v-y~~~v~~~~sPkVgLLNi----GeE~~KG~~l~~~t~~~Lk~~~~inF~G 210 (344)
T TIGR00182 138 KFVLLDVGANVDCKPKYLVQFAL--MGSV-YAKKVLGVDSPKVGLLNI----GEEDNKGNDLVKETFKLLKEDPNINFIG 210 (344)
T ss_pred EEEEEECCCCCCCCCCHHHHHHH--HHHH-HHHHCCCCCCCCEEECCC----CCCCHHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 26998555675788432334410--1332-111100058980562357----6500213566899999962288776065
Q ss_pred -----HHCCCCCCEEEECCCHHHCCC
Q ss_conf -----731388748975320211022
Q gi|254780313|r 130 -----QAIGGNPDLVLSDMAYPTIGH 150 (227)
Q Consensus 130 -----~~l~~~~DlVlSDmapn~SG~ 150 (227)
+.|.|.+|||+||+ .+||
T Consensus 211 nvE~rdlL~G~~DV~VcDG---F~GN 233 (344)
T TIGR00182 211 NVEARDLLDGVVDVLVCDG---FTGN 233 (344)
T ss_pred EECHHHHHCCCEEEEEECC---CCCC
T ss_conf 2000543068646998438---4131
No 186
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase; InterPro: IPR005888 The conversion of dTDP-glucose into dTDP-4-keto-6-deoxyglucose by Escherichia coli dTDP-glucose 4,6-dehydratase) takes place in the active site in three steps: dehydrogenation to dTDP-4-ketoglucose, dehydration to dTDP-4-ketoglucose-5,6-ene, and rereduction of C6 to the methyl group. The 4,6-dehydratase makes use of tightly bound NAD^+ as the coenzyme for transiently oxidizing the substrate, activating it for the dehydration step . This and other 4,6-dehydratases catalyze the first committed step in all 6-deoxysugar biosynthetic pathways described to date. Numerous 6-deoxysugars are used in bacterial lipopolysaccharide production as well as in the biosynthesis of a diverse array of secondary metabolites.; GO: 0008460 dTDP-glucose 46-dehydratase activity, 0009225 nucleotide-sugar metabolic process.
Probab=90.96 E-value=0.67 Score=26.10 Aligned_cols=59 Identities=20% Similarity=0.256 Sum_probs=42.2
Q ss_pred HHHHHHHHHHCCCCCCEEEEEEC----------CCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEECCC
Q ss_conf 06899999706878832786411----------213334698178301122079999999731388748975320
Q gi|254780313|r 80 SWSQVAARITGSNANNTRVVAID----------ILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144 (227)
Q Consensus 80 gWsQva~~~~~~~~~~~~VigVD----------l~~~~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDma 144 (227)
.|.-|+.+..+ +..|+=+| |.+.+..+...|++|||+|.+....+.+. ..+|+|+.=+|
T Consensus 14 nFvry~~~~~~----D~~v~vlDkLTYAgn~e~L~~l~~~pr~~Fv~GDI~D~~lv~~~~~e--~~~D~VvhFAA 82 (340)
T TIGR01181 14 NFVRYILNEHP----DAEVIVLDKLTYAGNLENLADLEDNPRYRFVKGDIGDRELVDRLLKE--HDPDAVVHFAA 82 (340)
T ss_pred HHHHHHHHHCC----CCEEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHH--CCCCEEEECCC
T ss_conf 99999997479----95799863544557865552332396615674230228899888400--17677886222
No 187
>TIGR00417 speE spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (), spermine synthase () and putrescine N-methyltransferase () . The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain . The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) . ; GO: 0003824 catalytic activity.
Probab=90.77 E-value=0.61 Score=26.35 Aligned_cols=130 Identities=15% Similarity=0.227 Sum_probs=73.2
Q ss_pred HCCCCC--CCCEEEEEECCCCHHHHHHHHHHCCC-CCCEEEEEECCC-------CCCCC-------CCCEEEECCCCHHH
Q ss_conf 458313--79678885045530689999970687-883278641121-------33346-------98178301122079
Q gi|254780313|r 61 KHQILQ--SNRRIVDLGSSPGSWSQVAARITGSN-ANNTRVVAIDIL-------DMEPI-------LGVKFFKFDFLDLD 123 (227)
Q Consensus 61 kf~l~k--~g~~VlDLGaaPGgWsQva~~~~~~~-~~~~~VigVDl~-------~~~~i-------~gv~~~~gDi~~~~ 123 (227)
.--||. +-..||=+|-+=||-+ ++.+..+ -.....+=||-. -+..+ |.|...-+|=
T Consensus 67 HvpL~~H~NPk~VLvIGGGDGG~l---REV~KH~sVE~~~lVdID~~VI~~srkyLP~~~~g~~dderv~~~i~DG---- 139 (284)
T TIGR00417 67 HVPLFAHPNPKKVLVIGGGDGGVL---REVVKHKSVEKATLVDIDEKVIELSRKYLPKLAAGSFDDERVDLAIDDG---- 139 (284)
T ss_pred HHHHHCCCCCCEEEEEECCCCCEE---EEEEECCCCCEEEEEECCHHHHHHHHHHCHHHHCCCCCCCEEEEEECCC----
T ss_conf 756536898854789963888468---7887559816799997274789998882612105665888035898251----
Q ss_pred HHHHHHHH----CCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHH-HHHHHHCCCCCCEEEEE-E----ECCCCHHHHH
Q ss_conf 99999973----1388748975320211022210157889899988-98764114877469999-3----0599989999
Q gi|254780313|r 124 SWEFIRQA----IGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAA-TFFALEMLNIGGDFLVK-T----FQGGTTNDIL 193 (227)
Q Consensus 124 ~~~~i~~~----l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~a-l~~A~~~Lk~gG~fV~K-~----F~G~~~~~l~ 193 (227)
.+.|++. ...+|||||+| +++--|-.. .|.... .+.+.+.|+++|.||+= . ++-+...++.
T Consensus 140 -~~fl~~~Gasdv~~~fDVIIvD-stDPvGPa~-------~LF~~~Fy~~~~~aL~~~Gv~v~Qss~s~~~~~~~~~d~~ 210 (284)
T TIGR00417 140 -FKFLRDTGASDVEKKFDVIIVD-STDPVGPAE-------TLFTKEFYELLKKALNEDGVIVAQSSESPWLQLELIKDLK 210 (284)
T ss_pred -HHHHHHCCCCCCCCCCCEEEEE-CCCCCCCCC-------CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHH
T ss_conf -7989761522221214479972-778956554-------1021799999998529998899802788432748888788
Q ss_pred HHHHHH-CCEEEEE
Q ss_conf 999862-5846997
Q gi|254780313|r 194 CLLKKH-FQKVIHV 206 (227)
Q Consensus 194 ~~l~~~-F~~V~~~ 206 (227)
+.++.. |..+..+
T Consensus 211 r~~~~~~F~~~~~y 224 (284)
T TIGR00417 211 RKVKEVPFPITEYY 224 (284)
T ss_pred HHHHHCCCCCCEEE
T ss_conf 87752689753046
No 188
>pfam05724 TPMT Thiopurine S-methyltransferase (TPMT). This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulfhydryl compounds, including anticancer and immunosuppressive thiopurines.
Probab=90.75 E-value=1.4 Score=24.02 Aligned_cols=116 Identities=20% Similarity=0.210 Sum_probs=64.0
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCC-----------C------------CCCCEEEECCCCH
Q ss_conf 1379678885045530689999970687883278641121333-----------4------------6981783011220
Q gi|254780313|r 65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME-----------P------------ILGVKFFKFDFLD 121 (227)
Q Consensus 65 ~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~-----------~------------i~gv~~~~gDi~~ 121 (227)
..++.+|+=-||+-|-=..+.++ . +..|+|||+.+.. | -.++.+++|||++
T Consensus 20 ~~~~~rvlVPlCGks~D~~wLa~----~--G~~VvGvels~~Av~~ff~e~~~~~~~~~~~~~~~~~~~~i~i~~gD~F~ 93 (203)
T pfam05724 20 LPPGLRVLVPLCGKALDMVWLAE----Q--GHFVVGVEISELAVEKFFAEANLSPPITELSGFKEYRAGGIELLCGDFFT 93 (203)
T ss_pred CCCCCEEEEECCCCHHHHHHHHH----C--CCEEEEEECCHHHHHHHHHHCCCCCCCEECCCCEEECCCCEEEEECCHHC
T ss_conf 99998899968998599999983----8--98489995679999999997378875101366213205864899773213
Q ss_pred HHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE--EC-----CCCH----H
Q ss_conf 79999999731388748975320211022210157889899988987641148774699993--05-----9998----9
Q gi|254780313|r 122 LDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT--FQ-----GGTT----N 190 (227)
Q Consensus 122 ~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~--F~-----G~~~----~ 190 (227)
.+.. ..+.||+|.==.|. + .++.. +=..=......+|++||..+.=. |. |.-+ .
T Consensus 94 l~~~------~~g~fD~IyDraal-~----ALpp~----~R~~Ya~~l~~lL~pgg~~lLitl~y~~~~~~GPPfsv~~~ 158 (203)
T pfam05724 94 LPRE------ELGKFDLIYDRAAL-C----ALPPE----MRPRYAKQMYELLPPGGEGLLITLDYPQTDHEGPPFSVPAA 158 (203)
T ss_pred CCHH------HCCCCCEEEEECCE-E----ECCHH----HHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCHH
T ss_conf 7843------46873489970323-5----38989----99999999999718996699999973865579948989999
Q ss_pred HHHHHHHHHCC
Q ss_conf 99999986258
Q gi|254780313|r 191 DILCLLKKHFQ 201 (227)
Q Consensus 191 ~l~~~l~~~F~ 201 (227)
++...+...|+
T Consensus 159 Ev~~lf~~~f~ 169 (203)
T pfam05724 159 ELEALFGGGWK 169 (203)
T ss_pred HHHHHHCCCCE
T ss_conf 99987089856
No 189
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=90.74 E-value=1.4 Score=24.02 Aligned_cols=97 Identities=19% Similarity=0.191 Sum_probs=56.1
Q ss_pred CCCEEEEEECCCCH--HHHHHHHHHCCCCCCEEEEEECCCCCC----CCCCCEEEECCCCHHHHHHHHHHHCCC-CCCEE
Q ss_conf 79678885045530--689999970687883278641121333----469817830112207999999973138-87489
Q gi|254780313|r 67 SNRRIVDLGSSPGS--WSQVAARITGSNANNTRVVAIDILDME----PILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLV 139 (227)
Q Consensus 67 ~g~~VlDLGaaPGg--WsQva~~~~~~~~~~~~VigVDl~~~~----~i~gv~~~~gDi~~~~~~~~i~~~l~~-~~DlV 139 (227)
.|++||=+|++|-| ..|++ +..| -..|+++|..+-. .--|+... -|..+.+..+.+.+.-++ .+|+|
T Consensus 163 ~g~~VlV~GaG~vGl~~~~~a-k~~G----a~~Vi~~d~~~~kl~~a~~lGa~~~-i~~~~~~~~~~~~~~t~~~G~Dvv 236 (341)
T PRK05396 163 VGEDVLITGAGPIGIMAAAVA-KHVG----ARHVVITDVNEYRLELARKMGATRA-VNVAKEDLRDVMAELGMTEGFDVG 236 (341)
T ss_pred CCCEEEEECCCCCCHHHHHHH-HHCC----CEEEEEEECCHHHHHHHHHCCCCEE-EECCCHHHHHHHHHHHCCCCCEEE
T ss_conf 888699989975432999999-9849----9289999489999998986499499-968850689999997489997699
Q ss_pred EECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECC
Q ss_conf 75320211022210157889899988987641148774699993059
Q gi|254780313|r 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG 186 (227)
Q Consensus 140 lSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G 186 (227)
+ | ++|... ++..+..+|++||.+++==+.+
T Consensus 237 i-d----~~G~~~------------~~~~~~~~l~~gG~vv~~G~~~ 266 (341)
T PRK05396 237 L-E----MSGAPS------------AFRQMLDAMNHGGRIAMLGIPP 266 (341)
T ss_pred E-E----CCCCHH------------HHHHHHHHHHCCCEEEEEECCC
T ss_conf 9-8----789899------------9999999863598999995579
No 190
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=90.24 E-value=1.6 Score=23.74 Aligned_cols=104 Identities=26% Similarity=0.338 Sum_probs=61.8
Q ss_pred CCCCCCCEEEEEECCCCHHHHHH-HHHHCCCCCCEEEEEECCCCC-----CCCCCCEEEECCCCHHHHHHHHHHHCCC-C
Q ss_conf 83137967888504553068999-997068788327864112133-----3469817830112207999999973138-8
Q gi|254780313|r 63 QILQSNRRIVDLGSSPGSWSQVA-ARITGSNANNTRVVAIDILDM-----EPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135 (227)
Q Consensus 63 ~l~k~g~~VlDLGaaPGgWsQva-~~~~~~~~~~~~VigVDl~~~-----~~i~gv~~~~gDi~~~~~~~~i~~~l~~-~ 135 (227)
...+++.+|+=+||+|=|-+-++ ++..| -.+|+.+|+.+- +..-+...+.-.-.+ +....+.+..++ .
T Consensus 164 ~~~~~~~~V~V~GaGpIGLla~~~a~~~G----a~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~-~~~~~~~~~t~g~g 238 (350)
T COG1063 164 AAVRPGGTVVVVGAGPIGLLAIALAKLLG----ASVVIVVDRSPERLELAKEAGGADVVVNPSED-DAGAEILELTGGRG 238 (350)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCC----CCEEEEECCCHHHHHHHHHHCCCCEEECCCCH-HHHHHHHHHCCCCC
T ss_conf 45788998999888899999999998769----82799979998999999987797187246301-47889998608987
Q ss_pred CCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC
Q ss_conf 74897532021102221015788989998898764114877469999305999
Q gi|254780313|r 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT 188 (227)
Q Consensus 136 ~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~ 188 (227)
+|+|+ .+||.. .++.-|...+++||+++.-=+-+.+
T Consensus 239 ~D~vi-----e~~G~~------------~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 239 ADVVI-----EAVGSP------------PALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred CCEEE-----ECCCCH------------HHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 99999-----998997------------9999999960259899999515886
No 191
>pfam03602 Cons_hypoth95 Conserved hypothetical protein 95.
Probab=90.16 E-value=1.6 Score=23.71 Aligned_cols=99 Identities=23% Similarity=0.215 Sum_probs=54.0
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CCC--CCCCEEEECCCCHHHHHHHHHHHCCCC
Q ss_conf 796788850455306899999706878832786411213---------334--698178301122079999999731388
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------MEP--ILGVKFFKFDFLDLDSWEFIRQAIGGN 135 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~~--i~gv~~~~gDi~~~~~~~~i~~~l~~~ 135 (227)
.+.+||||.|+-|+-.-=|..+ ....|+.||... ++. +++. .+..|... .... ......+
T Consensus 43 ~~~~~LDLFaGSGslglEAlSR-----GA~~v~fvE~~~~a~~~i~~N~~~l~~~~~-~~~~~~~~--~~~~-~~~~~~~ 113 (181)
T pfam03602 43 GGARVLDLFAGSGALGLEALSR-----GASSVVFVEKDKKAVATLKENLEALGLEGA-VLRMDAAR--ALLR-LAGKGPP 113 (181)
T ss_pred CCCEEEECCCCCCHHHHHHHHC-----CCCEEEEEECCHHHHHHHHHHHHHHCCCCE-EEECCHHH--HHHH-HCCCCCC
T ss_conf 8987998278726989999976-----998899996999999999999998589977-99810899--9987-5335788
Q ss_pred CCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHH--HHHCCCCCCEEEEEEECC
Q ss_conf 748975320211022210157889899988987--641148774699993059
Q gi|254780313|r 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF--ALEMLNIGGDFLVKTFQG 186 (227)
Q Consensus 136 ~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~--A~~~Lk~gG~fV~K~F~G 186 (227)
+|+|..| |.... ++...++.. ..++|+++|.+|+-.-..
T Consensus 114 fdiIF~D--PPY~~----------~~~~~~l~~l~~~~~l~~~~iiiiE~~~~ 154 (181)
T pfam03602 114 FDLVFLD--PPYAK----------GLIEEALELLAEKGWLNPNALIVVETESD 154 (181)
T ss_pred CCEEECC--CCCCC----------HHHHHHHHHHHHCCCCCCCEEEEEEECCC
T ss_conf 8766359--97542----------06999999999666657980999996687
No 192
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=90.03 E-value=0.47 Score=27.04 Aligned_cols=94 Identities=26% Similarity=0.218 Sum_probs=52.1
Q ss_pred CCCCCEEEEEECCCCHHHHH-HHHHHCCCCCCEEEEEECCCCCC----CCCCCEEEECCCCHHHHHHHHHHHC-CCCCCE
Q ss_conf 13796788850455306899-99970687883278641121333----4698178301122079999999731-388748
Q gi|254780313|r 65 LQSNRRIVDLGSSPGSWSQV-AARITGSNANNTRVVAIDILDME----PILGVKFFKFDFLDLDSWEFIRQAI-GGNPDL 138 (227)
Q Consensus 65 ~k~g~~VlDLGaaPGgWsQv-a~~~~~~~~~~~~VigVDl~~~~----~i~gv~~~~gDi~~~~~~~~i~~~l-~~~~Dl 138 (227)
..++++|+=+|++|.|-+-. +++..+ ..+|+++|+.+.. .--|+..+.-+ .+..+.+.... +..+|+
T Consensus 118 ~~~g~~V~V~G~G~iGl~~~~~a~~~G----a~~Vi~~d~~~~rl~~a~~~Ga~~~i~~---~~~~~~~~~~~~g~g~D~ 190 (280)
T TIGR03366 118 DLKGRRVLVVGAGMLGLTAAAAAAAAG----AARVVAADPSPDRRELALSFGATALAEP---EVLAERQGGLQNGRGVDV 190 (280)
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHCCCCEEECC---CCHHHHHHHHHCCCCCCE
T ss_conf 899998999907868999999999849----9879999199899999997399898377---577999999727888709
Q ss_pred EEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 97532021102221015788989998898764114877469999
Q gi|254780313|r 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK 182 (227)
Q Consensus 139 VlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K 182 (227)
|+ | ++|.. .++.-|++.|++||.+|+=
T Consensus 191 vi-e----~~G~~------------~~~~~a~~~l~~gG~iv~v 217 (280)
T TIGR03366 191 AL-E----FSGAT------------AAVRACLESLDVGGTAVLA 217 (280)
T ss_pred EE-E----CCCCH------------HHHHHHHHHHHCCCEEEEE
T ss_conf 99-8----78988------------9999999986049899998
No 193
>KOG2730 consensus
Probab=89.71 E-value=0.4 Score=27.51 Aligned_cols=74 Identities=30% Similarity=0.363 Sum_probs=43.7
Q ss_pred HHCCHHHHHHHHHHHHHHC--CCCCCCCEEEE-EECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCC--------CC---
Q ss_conf 8184479999999998645--83137967888-5045530689999970687883278641121333--------46---
Q gi|254780313|r 44 LEGWRARSAYKLLQINEKH--QILQSNRRIVD-LGSSPGSWSQVAARITGSNANNTRVVAIDILDME--------PI--- 109 (227)
Q Consensus 44 ~~gyrsRaafKL~eId~kf--~l~k~g~~VlD-LGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~--------~i--- 109 (227)
.|+|-|=+.=|..|-.... ..+ +...||| .|..=|+=+|.|.+ .+.|+|||+.|+. ++
T Consensus 70 ~e~wfsvTpe~ia~~iA~~v~~~~-~~~~iidaf~g~gGntiqfa~~-------~~~VisIdiDPikIa~AkhNaeiYGI 141 (263)
T KOG2730 70 REGWFSVTPEKIAEHIANRVVACM-NAEVIVDAFCGVGGNTIQFALQ-------GPYVIAIDIDPVKIACARHNAEVYGV 141 (263)
T ss_pred CCCEEEECCHHHHHHHHHHHHHHC-CCCHHHHHHHCCCCHHHHHHHH-------CCEEEEEECCHHHHHHHHCCCEEECC
T ss_conf 245477251899999987888733-7430025453688428899871-------88079985267888877606503257
Q ss_pred -CCCEEEECCCCHHHHH
Q ss_conf -9817830112207999
Q gi|254780313|r 110 -LGVKFFKFDFLDLDSW 125 (227)
Q Consensus 110 -~gv~~~~gDi~~~~~~ 125 (227)
..|.|++||+.+....
T Consensus 142 ~~rItFI~GD~ld~~~~ 158 (263)
T KOG2730 142 PDRITFICGDFLDLASK 158 (263)
T ss_pred CCEEEEEECHHHHHHHH
T ss_conf 75058883309999998
No 194
>pfam12147 Hydrolase_5 Putative lysophospholipase. This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=89.30 E-value=1.9 Score=23.29 Aligned_cols=138 Identities=17% Similarity=0.168 Sum_probs=80.0
Q ss_pred HHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCC-CC--CEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEEC
Q ss_conf 79999964089999999881844799999999986458313-79--6788850455306899999706878832786411
Q gi|254780313|r 26 SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQ-SN--RRIVDLGSSPGSWSQVAARITGSNANNTRVVAID 102 (227)
Q Consensus 26 s~~W~~r~~~D~y~~~Ak~~gyrsRaafKL~eId~kf~l~k-~g--~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVD 102 (227)
--+|+.|+.-|.-=. .|-|-|-..=..-|.+.-.-++ .| -.|||+.|++|-...=|.+..+.. .-.|+--|
T Consensus 95 ~Gr~IDr~YLnaiGW----rGIRqRk~hl~~li~~ai~~l~~~g~~v~ilDIAaG~GRYvldal~~~~~~--~~~illRD 168 (311)
T pfam12147 95 LGRLIDRNYLDAIGW----RGIRQRKLHLEELLRYAIARLRASGRPVRILDIAAGHGRYVLDALAKAPQR--PDSILLRD 168 (311)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCC--CCEEEECC
T ss_conf 466777865510547----799999999999999999999967995699985168616299999857988--74588514
Q ss_pred CCCCC-----------CCCCC-EEEECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 21333-----------46981-7830112207999999973138874897532021102221015788989998898764
Q gi|254780313|r 103 ILDME-----------PILGV-KFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFAL 170 (227)
Q Consensus 103 l~~~~-----------~i~gv-~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~ 170 (227)
..|+. -+.++ .|-+||-++.+....+ .-.+++++ +||..+. .-.++|+...|.=..
T Consensus 169 ys~~NV~~G~~li~ergl~~ia~Fe~gdAFd~~~la~l----~p~P~l~I------VSGLyEL--F~dN~lv~~sl~Gl~ 236 (311)
T pfam12147 169 YSPLNVEQGRALIAERGLEDIARFEQGDAFDPASLAAL----TPAPTLAI------VSGLYEL--FPDNDLVRRSLAGLA 236 (311)
T ss_pred CCHHHHHHHHHHHHHCCCCHHEEEEECCCCCHHHHHCC----CCCCCEEE------EECHHHH--CCCHHHHHHHHHHHH
T ss_conf 88877999999999749620006740576797676326----99997899------7012663--687299999999999
Q ss_pred HCCCCCCEEEE
Q ss_conf 11487746999
Q gi|254780313|r 171 EMLNIGGDFLV 181 (227)
Q Consensus 171 ~~Lk~gG~fV~ 181 (227)
..+.+||.+|-
T Consensus 237 ~ai~~gGyLIY 247 (311)
T pfam12147 237 QAVEPGGYLIY 247 (311)
T ss_pred HHCCCCCEEEE
T ss_conf 75089978998
No 195
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=88.96 E-value=2 Score=23.14 Aligned_cols=103 Identities=17% Similarity=0.176 Sum_probs=51.2
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCC----CCCCCE-EEEC-CCCHHHHHHHHHHHCCCC-CC
Q ss_conf 1379678885045530689999970687883278641121333----469817-8301-122079999999731388-74
Q gi|254780313|r 65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME----PILGVK-FFKF-DFLDLDSWEFIRQAIGGN-PD 137 (227)
Q Consensus 65 ~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~----~i~gv~-~~~g-Di~~~~~~~~i~~~l~~~-~D 137 (227)
++||++|+=+|++|-|=. +.+.....| .+|+++|..+-. .--|+. ++.. |....+..+.+.....+. +|
T Consensus 164 v~~g~~V~V~G~G~iGl~--a~~~ak~~G--a~Vi~vd~~~~rle~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~~G~~ 239 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGY--MVQTAKAMG--AAVVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARGLR 239 (349)
T ss_pred CCCCCEEEEECCCHHHHH--HHHHHHHCC--CEEEEEECCHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHCCCCCCC
T ss_conf 899988999897489999--999999859--9799994999999999964998998787677899999997541456756
Q ss_pred EEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf 89753202110222101578898999889876411487746999930
Q gi|254780313|r 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF 184 (227)
Q Consensus 138 lVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F 184 (227)
.. .|...+++|.. .++..|...+++||++++==+
T Consensus 240 ~~-~~~v~e~~G~~------------~~~~~a~~~~~~gG~iv~vG~ 273 (349)
T TIGR03201 240 ST-GWKIFECSGSK------------PGQESALSLLSHGGTLVVVGY 273 (349)
T ss_pred CC-CCEEEEECCCH------------HHHHHHHHHCCCCCEEEEECC
T ss_conf 55-63699824888------------999999997358979999750
No 196
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=88.56 E-value=0.31 Score=28.18 Aligned_cols=97 Identities=18% Similarity=0.235 Sum_probs=55.1
Q ss_pred CCCCEEEEEECCCCHHHHHH-HHHHCCCCCCEEEEEECCCCC----CCCCCCEEEECCCCHHHHHHHHHHHCCCCCCEEE
Q ss_conf 37967888504553068999-997068788327864112133----3469817830112207999999973138874897
Q gi|254780313|r 66 QSNRRIVDLGSSPGSWSQVA-ARITGSNANNTRVVAIDILDM----EPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVL 140 (227)
Q Consensus 66 k~g~~VlDLGaaPGgWsQva-~~~~~~~~~~~~VigVDl~~~----~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVl 140 (227)
.+|++||=+|++|.|-+.+. ++..| ..+|+++|+.+- ..--|+..+. |-.+.+ ..++.. ..+.+|+|+
T Consensus 168 ~~g~~VlV~G~G~iGl~~~~~ak~~G----a~~Vi~~d~~~~rl~~a~~~Ga~~~i-~~~~~~-~~~~~~-~~g~~Dvvi 240 (343)
T PRK09880 168 LQGKRVFISGVGPIGCLIVSAVKTLG----AAEIVCADLSPRSLSLARQMGADVLV-NPQNDD-MDHWKA-EKGYFDVSF 240 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHCCCCEEE-CCCCCC-HHHHHH-HCCCCCEEE
T ss_conf 56988999847767999999999869----98799997978999999972997998-798743-999996-369977899
Q ss_pred ECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECC
Q ss_conf 5320211022210157889899988987641148774699993059
Q gi|254780313|r 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG 186 (227)
Q Consensus 141 SDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G 186 (227)
+++|.. .++..|+..|++||.+++-=+.+
T Consensus 241 -----e~~G~~------------~~~~~al~~~r~gG~iv~vG~~~ 269 (343)
T PRK09880 241 -----EVSGHP------------SSVNTCLEVTRAKGVMVQVGMGG 269 (343)
T ss_pred -----EECCCH------------HHHHHHHHHCCCCEEEEEEECCC
T ss_conf -----921999------------99999997377983999997279
No 197
>PRK11524 putative methyltransferase; Provisional
Probab=88.33 E-value=2.2 Score=22.88 Aligned_cols=28 Identities=21% Similarity=0.355 Sum_probs=15.3
Q ss_pred CCCCCEEEEEEECCCCHHHHH-HHHHHHC
Q ss_conf 487746999930599989999-9998625
Q gi|254780313|r 173 LNIGGDFLVKTFQGGTTNDIL-CLLKKHF 200 (227)
Q Consensus 173 Lk~gG~fV~K~F~G~~~~~l~-~~l~~~F 200 (227)
..+-|..|+=-|.|+++..+. ..+.+.|
T Consensus 205 ~S~egDlVLDPF~GSGTT~~aA~~lgR~~ 233 (284)
T PRK11524 205 SSNPGDIVLDPFAGSFTTGAVAKASGRKF 233 (284)
T ss_pred HCCCCCEEEECCCCCCHHHHHHHHCCCCE
T ss_conf 48899989957988868999999829958
No 198
>TIGR00091 TIGR00091 tRNA (guanine-N(7)-)-methyltransferase; InterPro: IPR004395 This predicted S-adenosylmethionine-dependent methyltransferase is found in a single copy in most Bacteria . It is also found, with a short amino-terminal extension in eukaryotes. Its function is unknown. In Escherichia coli, this protein flanks the DNA repair protein MutY, also called micA.; GO: 0008168 methyltransferase activity.
Probab=88.21 E-value=2.2 Score=22.83 Aligned_cols=122 Identities=16% Similarity=0.114 Sum_probs=69.1
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECC--------CC-----------CCCCC--CCEEEECCCCHHHH
Q ss_conf 37967888504553068999997068788327864112--------13-----------33469--81783011220799
Q gi|254780313|r 66 QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI--------LD-----------MEPIL--GVKFFKFDFLDLDS 124 (227)
Q Consensus 66 k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl--------~~-----------~~~i~--gv~~~~gDi~~~~~ 124 (227)
.....+||+|||-|.+.--.++..+ +...+||-+ -+ -..+. |++.+++|.....
T Consensus 18 ~~~p~~~EIGcG~G~fl~~~A~~nP----~~~flGIE~RvqvtnYv~~p~v~~a~~~~~~~g~~~~Nl~~L~~DA~~l~- 92 (216)
T TIGR00091 18 NQKPLVLEIGCGKGRFLIKMAKQNP----DKNFLGIEIRVQVTNYVETPIVLKAINKANKLGLKLRNLHVLCGDANELL- 92 (216)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHCC----CCCEEEEEEEEEEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHCCHHHHH-
T ss_conf 1454489841687602689977279----97277789998874102272899887557661784421352213602320-
Q ss_pred HHHHHHHCCCCCCEEEECCCHHHCCC---------CCCHHH-HHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHH
Q ss_conf 99999731388748975320211022---------210157-88989998898764114877469999305999899999
Q gi|254780313|r 125 WEFIRQAIGGNPDLVLSDMAYPTIGH---------RKIDHL-RTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILC 194 (227)
Q Consensus 125 ~~~i~~~l~~~~DlVlSDmapn~SG~---------~~~D~~-~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~ 194 (227)
+--.++.-|.++.+ +..-+- |..+ ..-|.-...+|++||.+-+|+=.-..++.-++
T Consensus 93 ------------~~~~~~~PP~l~k~f~~FPDPW~KkRH~KRR~~~--~~Fl~~~~~~L~~~G~i~~~TD~~~lfE~mL~ 158 (216)
T TIGR00091 93 ------------EKFFPDGPPSLSKVFLNFPDPWPKKRHNKRRITQ--PHFLKEVANVLKKGGVIELKTDNEPLFEDMLK 158 (216)
T ss_pred ------------HHHHCCCCCCEEEEEEECCCCCHHHHHCCCCCCC--HHHHHHHHHHCCCCCEEEEECCCHHHHHHHHH
T ss_conf ------------4540078980456888778895102102234256--78999999970459689997078467899999
Q ss_pred HHHHHC-CEEEEE
Q ss_conf 998625-846997
Q gi|254780313|r 195 LLKKHF-QKVIHV 206 (227)
Q Consensus 195 ~l~~~F-~~V~~~ 206 (227)
.+..++ ..+.+.
T Consensus 159 ~l~~~~q~f~~~~ 171 (216)
T TIGR00091 159 VLSENDQLFVIIS 171 (216)
T ss_pred HHHHCCCCEEEEE
T ss_conf 9965364124521
No 199
>pfam03141 DUF248 Putative methyltransferase. Members of this family of hypothetical plant proteins are probably methyltransferases: several of the aligned sequences either match the methyltransferase profile, or contain a SAM-binding motif. A protein from Arabidopsis thaliana contains both. Several family members are described as ankyrin like.
Probab=87.68 E-value=0.66 Score=26.12 Aligned_cols=162 Identities=15% Similarity=0.174 Sum_probs=70.8
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHCCCCC--CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEE
Q ss_conf 99999881844799999999986458313--7967888504553068999997068788327864112133346981783
Q gi|254780313|r 38 YVQRAQLEGWRARSAYKLLQINEKHQILQ--SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFF 115 (227)
Q Consensus 38 y~~~Ak~~gyrsRaafKL~eId~kf~l~k--~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~i~gv~~~ 115 (227)
|..-.+...-|-+.+++|..+ ++. .-.||+|--|.=|||.--..+ ..-.-..||-++-. .--+|.+=
T Consensus 339 f~~D~~~Wk~~V~~Y~~l~~~-----~i~~~~~RNVMDMnA~~GGFAAAL~~---~~vWVMNVVP~~~~---nTL~vIyd 407 (506)
T pfam03141 339 FKADTELWKRRVSKYKRLLKL-----LIDKGRVRNVMDMNAGFGGFAAALID---DPVWVMNVVPVDSP---DTLPVIYD 407 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHHC-----CCCCCCEEEEEECCCCCCHHHHHHCC---CCEEEEEECCCCCC---CCCCEEEE
T ss_conf 898999999999999987402-----25567601222124442158898637---98049983558999---87545875
Q ss_pred ECCCCHHHHHHHH--HHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCH-HHH
Q ss_conf 0112207999999--9731388748975320211022210157889899988987641148774699993059998-999
Q gi|254780313|r 116 KFDFLDLDSWEFI--RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT-NDI 192 (227)
Q Consensus 116 ~gDi~~~~~~~~i--~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~-~~l 192 (227)
.|=|.-. ++-. .......+|++=+|.-...-- + -.++ +..+--..++|+|+|.+|+.= ..+. ..+
T Consensus 408 RGLiG~y--HDWCE~FsTYPRTYDLlHA~~lfS~~~----~---rC~~-~dillEMDRILRP~G~vIiRD--~~~vl~~v 475 (506)
T pfam03141 408 RGLIGIY--HDWCEPFSTYPRTYDLLHADHLFSLYK----K---RCNL-EDILLEMDRILRPGGAVIIRD--DVDVLDKV 475 (506)
T ss_pred CCCCCEE--ECCCCCCCCCCCCHHHHHHHHHHHHHC----C---CCCH-HHHHHHHHHHCCCCCEEEEEC--CHHHHHHH
T ss_conf 4421010--022455788885077773532347761----7---8658-999988876006881499946--79999999
Q ss_pred HHHHHHHCCEEEEECCCCCCCCCCEEEEEEC
Q ss_conf 9999862584699768665755824989830
Q gi|254780313|r 193 LCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223 (227)
Q Consensus 193 ~~~l~~~F~~V~~~KP~aSR~~S~E~Ylv~~ 223 (227)
...++..==++.++-- ..-+...|.-|+|.
T Consensus 476 ~~i~~~m~W~~~~~d~-e~g~~~~EkiL~~~ 505 (506)
T pfam03141 476 KKIAKAMRWEVRITDT-EDGPHDPEKILIAQ 505 (506)
T ss_pred HHHHHHCCCCEEEEEC-CCCCCCCCEEEEEE
T ss_conf 9999738640698765-66899871389986
No 200
>pfam06080 DUF938 Protein of unknown function (DUF938). This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=87.60 E-value=2.4 Score=22.60 Aligned_cols=28 Identities=25% Similarity=0.189 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 5788989998898764114877469999
Q gi|254780313|r 155 HLRTMSLCEAATFFALEMLNIGGDFLVK 182 (227)
Q Consensus 155 ~~~~~~L~~~al~~A~~~Lk~gG~fV~K 182 (227)
|+.+-+.++..+.-|.++|++||.|++=
T Consensus 110 HI~pw~~~~~lf~ga~~~L~~gG~l~lY 137 (201)
T pfam06080 110 HISPWSCVEGLFRGAGRLLPPGGVLYIY 137 (201)
T ss_pred HHCCHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 7378999999999999985158826874
No 201
>KOG1331 consensus
Probab=87.44 E-value=2.2 Score=22.81 Aligned_cols=127 Identities=21% Similarity=0.154 Sum_probs=67.0
Q ss_pred HCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCC-CCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC----CC
Q ss_conf 408999999988184479999999998645831-3796788850455306899999706878832786411213----33
Q gi|254780313|r 33 HINDPYVQRAQLEGWRARSAYKLLQINEKHQIL-QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD----ME 107 (227)
Q Consensus 33 ~~~D~y~~~Ak~~gyrsRaafKL~eId~kf~l~-k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~----~~ 107 (227)
....-|.+.|.. -+-..++..-.-..|-.. -.|..++|.||+=|- ..+.+ ..+.++|.|+-. ..
T Consensus 13 yVh~IYd~ia~~---fs~tr~~~Wp~v~qfl~~~~~gsv~~d~gCGngk-------y~~~~-p~~~~ig~D~c~~l~~~a 81 (293)
T KOG1331 13 YVHSIYDKIATH---FSATRAAPWPMVRQFLDSQPTGSVGLDVGCGNGK-------YLGVN-PLCLIIGCDLCTGLLGGA 81 (293)
T ss_pred HHHHHHHHHHHH---CCCCCCCCCHHHHHHHHCCCCCCEEEECCCCCCC-------CCCCC-CCCEEEECCHHHHHCCCC
T ss_conf 757999876553---0654447617899998506876404542468765-------57679-863154030223220533
Q ss_pred CCCCC-EEEECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEC
Q ss_conf 46981-7830112207999999973138874897532021102221015788989998898764114877469999305
Q gi|254780313|r 108 PILGV-KFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185 (227)
Q Consensus 108 ~i~gv-~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~ 185 (227)
.-.|. .....|+.+... -...+|..+| + ..+-|..+-+.-+.++.-..++|+|||+..+=++-
T Consensus 82 k~~~~~~~~~ad~l~~p~-------~~~s~d~~ls-----i---avihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa 145 (293)
T KOG1331 82 KRSGGDNVCRADALKLPF-------REESFDAALS-----I---AVIHHLSTRERRERALEELLRVLRPGGNALVYVWA 145 (293)
T ss_pred CCCCCCEEEHHHHHCCCC-------CCCCCCCCHH-----H---HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEH
T ss_conf 347986256124442898-------7876000323-----3---54444436778999999999872678856899850
No 202
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=87.03 E-value=2.6 Score=22.39 Aligned_cols=183 Identities=15% Similarity=0.127 Sum_probs=99.5
Q ss_pred HHHHHCCCHHHHH--HHHHCCHHHHHHHHHHHHHH--CCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCC
Q ss_conf 9996408999999--98818447999999999864--5831379678885045530689999970687883278641121
Q gi|254780313|r 29 WLNRHINDPYVQR--AQLEGWRARSAYKLLQINEK--HQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL 104 (227)
Q Consensus 29 W~~r~~~D~y~~~--Ak~~gyrsRaafKL~eId~k--f~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~ 104 (227)
|+-..+-...+-+ ...|=|..|.-..|++=... -..+.++..+|||||+-+--+....+-....+....-++||+.
T Consensus 34 ~fYD~~Gs~LFe~It~lpEYYptR~E~~IL~~~~~eIa~~i~~~~~lVElGsG~~~Kt~~LL~al~~~~~~~~Y~piDIS 113 (319)
T TIGR03439 34 LLYDDEGLKLFEEITYSPEYYLTNDEIEILKKHSSDIAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVS 113 (319)
T ss_pred HHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 51125086999998779866853789999999899999855899769974688724589999999854997428865176
Q ss_pred C---------C--CCCCCC--EEEECCCCHHHHHHHHHH-HCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 3---------3--346981--783011220799999997-3138874897532021102221015788989998898764
Q gi|254780313|r 105 D---------M--EPILGV--KFFKFDFLDLDSWEFIRQ-AIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFAL 170 (227)
Q Consensus 105 ~---------~--~~i~gv--~~~~gDi~~~~~~~~i~~-~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~ 170 (227)
. + ...+++ .-+.||+++... .+.. ......-+++-=+ ++-||-+-+++.. + .-.++.
T Consensus 114 ~~~L~~s~~~l~~~~~~~l~v~~i~gdy~~~~~--~l~~~~~~~~~~l~~flG--StIGNf~~~eA~~--f---L~~~~~ 184 (319)
T TIGR03439 114 RSELQRTLAELPLGNFSHVRCAGLLGTYDDGLA--WLKRPENRSRPTTILWLG--SSIGNFSRPEAAA--F---LAGFLA 184 (319)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEEECHHHHHH--HCCCCCCCCCCEEEEECC--CCCCCCCHHHHHH--H---HHHHHH
T ss_conf 999999998742404897558888753787654--205754467875999616--5446789799999--9---999999
Q ss_pred HCCCCCCEEEEEE------------EC---CC--CHH-HHHHH----HH------HHCCEEEEECCCCCCCCCCEEEEEE
Q ss_conf 1148774699993------------05---99--989-99999----98------6258469976866575582498983
Q gi|254780313|r 171 EMLNIGGDFLVKT------------FQ---GG--TTN-DILCL----LK------KHFQKVIHVKPVASRAESVEMFLLA 222 (227)
Q Consensus 171 ~~Lk~gG~fV~K~------------F~---G~--~~~-~l~~~----l~------~~F~~V~~~KP~aSR~~S~E~Ylv~ 222 (227)
..|.+||.|++=+ ++ |- .|+ .++.. +. ..|+.+-.+-|..+|- |+|+++
T Consensus 185 ~~l~~~d~lLiG~Dl~Kd~~~l~~AYnD~~GvTa~FnlN~L~riNr~Lg~d~F~~~~f~h~a~yn~~~~ri---em~L~s 261 (319)
T TIGR03439 185 TALSPSDSFLIGLDGCKDPDKVLRAYNDPGGVTRRFVLNGLVHANEILGSEAFREEDWEFLGEWDEELGRH---EAFYIP 261 (319)
T ss_pred HHCCCCCEEEECCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCEEEEEECCCCCCC---HHEEEC
T ss_conf 72598875896566777989989763088541099998599999998473457653067999984775813---112770
Q ss_pred C
Q ss_conf 0
Q gi|254780313|r 223 K 223 (227)
Q Consensus 223 ~ 223 (227)
+
T Consensus 262 ~ 262 (319)
T TIGR03439 262 K 262 (319)
T ss_pred C
T ss_conf 6
No 203
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=86.74 E-value=2.2 Score=22.81 Aligned_cols=93 Identities=16% Similarity=0.262 Sum_probs=48.3
Q ss_pred HCCCCCCCCEEEEEEC-CCCHHHHHHHHHHCCCCCCEEEEEECCCCCCC--C--CCCEEEECCCCHHHHHHHHHHHCCCC
Q ss_conf 4583137967888504-55306899999706878832786411213334--6--98178301122079999999731388
Q gi|254780313|r 61 KHQILQSNRRIVDLGS-SPGSWSQVAARITGSNANNTRVVAIDILDMEP--I--LGVKFFKFDFLDLDSWEFIRQAIGGN 135 (227)
Q Consensus 61 kf~l~k~g~~VlDLGa-aPGgWsQva~~~~~~~~~~~~VigVDl~~~~~--i--~gv~~~~gDi~~~~~~~~i~~~l~~~ 135 (227)
+.+ +++|++||=.|| ++.|-. +.+..... +.+|+++|..+-.. + -+.+.+. +....+.+.+. +.
T Consensus 157 ~~~-~~~g~~VlI~Ga~G~vG~~--aiqlak~~--Ga~vi~v~~~~~k~~~~~~~~~~~i~----~~~~~~~~~~~--~g 225 (332)
T PRK13771 157 RAG-VSEGETVLVTGAGGGVGIH--AVQVAKAY--GAKVIAVTTSESKAKAVGKYADYVIV----GSKFSEEVKKL--GG 225 (332)
T ss_pred HHC-CCCCCEEEEECCCCHHHHH--HHHHHHHC--CCEEEEEECCHHHHHHHHHCCCEEEE----CCCHHHHHHHC--CC
T ss_conf 719-9999999997787758999--99999986--99899994999999999856998983----63057888734--68
Q ss_pred CCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 74897532021102221015788989998898764114877469999
Q gi|254780313|r 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK 182 (227)
Q Consensus 136 ~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K 182 (227)
+|+|+ +++|.. ++.-+...|++||.+|+=
T Consensus 226 ~Dvvi-----d~~G~~-------------~~~~~~~~l~~~G~iv~~ 254 (332)
T PRK13771 226 ADIVI-----ETVGGP-------------TLEESLRSLNWGGKIVLI 254 (332)
T ss_pred CCEEE-----ECCCHH-------------HHHHHHHHHCCCCEEEEE
T ss_conf 63898-----457668-------------899888862589699999
No 204
>TIGR00095 TIGR00095 putative methyltransferase; InterPro: IPR004398 This is a family of conserved hypothetical proteins, which includes a putative methylase..
Probab=86.61 E-value=1.9 Score=23.26 Aligned_cols=106 Identities=17% Similarity=0.035 Sum_probs=65.9
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CCCC------CC--CEEEECCCCHHHHHHHHH
Q ss_conf 796788850455306899999706878832786411213---------3346------98--178301122079999999
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------MEPI------LG--VKFFKFDFLDLDSWEFIR 129 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~~i------~g--v~~~~gDi~~~~~~~~i~ 129 (227)
.+..+||++|+-|+=.-=|..+- --.++-||... ++-+ ++ ..+..++.....+.
T Consensus 55 ~~~~~LD~FAGsG~LG~EALSRg-----A~~~~f~E~d~~~~~~l~~N~~~L~nrlk~~~~~~~~~~~~~~~~~~~---- 125 (210)
T TIGR00095 55 VGAHFLDLFAGSGSLGLEALSRG-----AKSAVFVEQDKKVAQTLKENLSTLKNRLKLSGEQATVLNDAERALLFL---- 125 (210)
T ss_pred CCCEEEEEECCCHHHHHHHHHHC-----CCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHH----
T ss_conf 68727885406446537664014-----162378736867999999999998887158530000000256665776----
Q ss_pred HHCCC-CCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf 73138-87489753202110222101578898999889876411487746999930
Q gi|254780313|r 130 QAIGG-NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF 184 (227)
Q Consensus 130 ~~l~~-~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F 184 (227)
..=++ .+|+|.-| |... ....|-...++|+..||+-...+|+++|..|+-.=
T Consensus 126 ~~~~ts~~d~iylD--PPf~-~~~ad~~~~l~l~~~alerl~~~L~~~~~i~ve~~ 178 (210)
T TIGR00095 126 AKKQTSPFDIIYLD--PPFN-TGLADLEAILELLGEALERLNKWLNPKGLIVVEYD 178 (210)
T ss_pred HCCCCCCEEEEEEC--CCCC-CCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 51799611478714--8888-76103799999999999987310487857998634
No 205
>pfam01739 CheR CheR methyltransferase, SAM binding domain. CheR proteins are part of the chemotaxis signaling mechanism in bacteria. CheR methylates the chemotaxis receptor at specific glutamate residues. CheR is an S-adenosylmethionine- dependent methyltransferase - the C-terminal domain (this one) binds SAM.
Probab=86.05 E-value=2.9 Score=22.07 Aligned_cols=98 Identities=20% Similarity=0.178 Sum_probs=50.5
Q ss_pred CCEEEEEECCCCH--HHH--HHHHHHC-CCCCCEEEEEECCCC---------------CCCCC-----------------
Q ss_conf 9678885045530--689--9999706-878832786411213---------------33469-----------------
Q gi|254780313|r 68 NRRIVDLGSSPGS--WSQ--VAARITG-SNANNTRVVAIDILD---------------MEPIL----------------- 110 (227)
Q Consensus 68 g~~VlDLGaaPGg--WsQ--va~~~~~-~~~~~~~VigVDl~~---------------~~~i~----------------- 110 (227)
.-+|.-.||+-|- +|- .+.+..+ ....+..|+|.||.. +..++
T Consensus 31 ~lrIWsagCStGEE~YSlAi~l~e~~~~~~~~~~~I~atDI~~~~l~~Ar~G~Y~~~~~~~~p~~~~~ryF~~~~~~~~~ 110 (194)
T pfam01739 31 RVRIWSAGCSSGEEPYSLAMLLAETLPNALPWDFKILATDIDLSALEKARAGVYPERELEGLPPELLRRYFTKGAGGGYR 110 (194)
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCCHHHHHCCCHHHHHHHCCCCCCCCEE
T ss_conf 55999736889951899999999974325787449999739889999998789889998459999999628607899487
Q ss_pred -------CCEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf -------817830112207999999973138874897532021102221015788989998898764114877469999
Q gi|254780313|r 111 -------GVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK 182 (227)
Q Consensus 111 -------gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K 182 (227)
.|.|-+.|+.+. ....++|+|+|= |+- .+-.-+....++.--...|+|||-+++=
T Consensus 111 i~~~lr~~V~F~~~NL~~~--------~~~~~~DlIfCR---NVl------IYF~~~~~~~vl~~l~~~L~~gG~L~lG 172 (194)
T pfam01739 111 VKPEIKEMVLFEYHNLLDY--------PPLGDFDVIFCR---NVL------IYFDEETQRKILNRFASALKPGGYLFLG 172 (194)
T ss_pred ECHHHHCCCEEEECCCCCC--------CCCCCEEEEEEC---CEE------EECCHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 6889971166854665568--------876750399980---210------1379999999999999984899499980
No 206
>pfam04672 DUF574 Protein of unknown function (DUF574). Family of uncharacterized proteins.
Probab=86.02 E-value=2.9 Score=22.06 Aligned_cols=135 Identities=16% Similarity=0.203 Sum_probs=78.1
Q ss_pred CHHHHHHHHHHHHHHCCCCCCC-CEEEEEECC---CCHHHHHHHHHHCCCCCCEEEEEECCCCCC---------C--CCC
Q ss_conf 4479999999998645831379-678885045---530689999970687883278641121333---------4--698
Q gi|254780313|r 47 WRARSAYKLLQINEKHQILQSN-RRIVDLGSS---PGSWSQVAARITGSNANNTRVVAIDILDME---------P--ILG 111 (227)
Q Consensus 47 yrsRaafKL~eId~kf~l~k~g-~~VlDLGaa---PGgWsQva~~~~~~~~~~~~VigVDl~~~~---------~--i~g 111 (227)
|..||+=-|.. .-| .-.|||||+ .|.--|+|.+... +.+|+=||.-|+. . -..
T Consensus 56 Fl~RaVr~La~--------e~GIrQFLDlGsGlPT~~nvHeVAq~~~P----~aRVVYVD~DPvvlaHaraLL~~~~~~~ 123 (268)
T pfam04672 56 FMHRAVRHLAE--------EAGIRQFLDIGTGLPTEPNVHQVAQRVAP----ESRVVYVDNDPIVLTHARALLTSTPEGA 123 (268)
T ss_pred HHHHHHHHHHH--------HCCCEEEEEECCCCCCCCCCCHHHHHCCC----CCEEEEECCCCHHHHHHHHHHCCCCCCC
T ss_conf 99999999987--------54950577605699999972146673299----8639998898279999999956898774
Q ss_pred CEEEECCCCHHHHHH---HHHHHCC--CCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECC
Q ss_conf 178301122079999---9997313--88748975320211022210157889899988987641148774699993059
Q gi|254780313|r 112 VKFFKFDFLDLDSWE---FIRQAIG--GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG 186 (227)
Q Consensus 112 v~~~~gDi~~~~~~~---~i~~~l~--~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G 186 (227)
..++++|+.+++..- ++...++ .++-+++...-..+. |...-..+ +.--...|.+|..+++-.+.+
T Consensus 124 t~~v~aDlrdp~~iL~~p~~~~~lD~~rPValll~~vLh~v~-----D~~~p~~i----v~~l~d~l~pGS~L~ish~t~ 194 (268)
T pfam04672 124 TDYIHADVRDPEEILEHPEARRTLDFDRPVALSLVAILHFVP-----DDDDPYGI----VRRLMDALPAGSYLVLSHGTS 194 (268)
T ss_pred EEEEECCCCCHHHHHCCHHHHHHCCCCCCCHHHHHHHHCCCC-----CCCCHHHH----HHHHHHHCCCCCEEEEEECCC
T ss_conf 699977777989986598788537878861345334434578-----61049999----999997269976599984358
Q ss_pred CCHHHHHHHHHHHCCE
Q ss_conf 9989999999862584
Q gi|254780313|r 187 GTTNDILCLLKKHFQK 202 (227)
Q Consensus 187 ~~~~~l~~~l~~~F~~ 202 (227)
....+....+...|++
T Consensus 195 d~~p~~~~~~~~~~~~ 210 (268)
T pfam04672 195 DLNPELVEAVADVYAK 210 (268)
T ss_pred CCCHHHHHHHHHHHHC
T ss_conf 8888899999999970
No 207
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=85.93 E-value=1.1 Score=24.86 Aligned_cols=41 Identities=29% Similarity=0.351 Sum_probs=32.2
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCC
Q ss_conf 796788850455306899999706878832786411213334698
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILG 111 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~i~g 111 (227)
.|.+||=.|-+|.|++- +..+++. +..|+|||=+.++|++-
T Consensus 400 tg~~VLVvGlGPAG~tL-sH~Lln~---Gh~Vv~IDGLKIepLp~ 440 (1048)
T PRK06567 400 TNYNILVTGLGPAGFSL-SYYLLRS---GHNVTAIDGLKITPLPF 440 (1048)
T ss_pred CCCEEEEEECCCCCHHH-HHHHHHC---CCCEEEECCEEECCCCH
T ss_conf 99648999248652018-8998747---87289865445202874
No 208
>KOG1269 consensus
Probab=85.61 E-value=0.73 Score=25.86 Aligned_cols=104 Identities=19% Similarity=0.178 Sum_probs=53.5
Q ss_pred CCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf 31379678885045530689999970687883278641121333469817830112207999999973138874897532
Q gi|254780313|r 64 ILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDM 143 (227)
Q Consensus 64 l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDm 143 (227)
-++|+..++|+||.=|+-+-++...- ...++|+|+.+-+- ...........+..+.+.|++|.
T Consensus 107 ~~~~~~~~~~~~~g~~~~~~~i~~f~-----~~~~~Gl~~n~~e~------------~~~~~~~~~~~l~~k~~~~~~~~ 169 (364)
T KOG1269 107 SCFPGSKVLDVGTGVGGPSRYIAVFK-----KAGVVGLDNNAYEA------------FRANELAKKAYLDNKCNFVVADF 169 (364)
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHC-----CCCCCCCCCCHHHH------------HHHHHHHHHHHHHHHCCEEHHHH
T ss_conf 27654111224767675167788862-----57751787679999------------99887778887642023522555
Q ss_pred CHH------HCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf 021------10222101578898999889876411487746999930
Q gi|254780313|r 144 AYP------TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF 184 (227)
Q Consensus 144 apn------~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F 184 (227)
.-- ..|.+.+|--.-+.=...++.=..++++|||-+++|-|
T Consensus 170 ~~~~fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~ 216 (364)
T KOG1269 170 GKMPFEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEW 216 (364)
T ss_pred HCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEHHH
T ss_conf 14887746667489876124478699999988503677716884888
No 209
>PRK13845 putative glycerol-3-phosphate acyltransferase PlsX; Provisional
Probab=85.42 E-value=0.87 Score=25.39 Aligned_cols=92 Identities=21% Similarity=0.374 Sum_probs=42.6
Q ss_pred CHHHHHHHHHHHHH--HCCC------CCCCC--EEEEEECCCC----HHHHHHH-------HHHCCCCCCEEEEEECCCC
Q ss_conf 44799999999986--4583------13796--7888504553----0689999-------9706878832786411213
Q gi|254780313|r 47 WRARSAYKLLQINE--KHQI------LQSNR--RIVDLGSSPG----SWSQVAA-------RITGSNANNTRVVAIDILD 105 (227)
Q Consensus 47 yrsRaafKL~eId~--kf~l------~k~g~--~VlDLGaaPG----gWsQva~-------~~~~~~~~~~~VigVDl~~ 105 (227)
+-+=|-|.|--|.- +--| .+++. .+||+||-+- --.|+|. ...+-. +++| | |+.
T Consensus 207 lmA~a~~~Lgri~GI~RPAIa~~~Pt~~~g~~~llLD~GANvdckpe~L~QFAiMGsiYAk~Vlgi~--~PrV-G--LLN 281 (437)
T PRK13845 207 MMASAIFRLGRLKGIDRPAIGALFPTKDPGQPVLVLDVGANMDCKPSYLHQFALLGNIYSRDVLQVK--KPRI-G--LLN 281 (437)
T ss_pred HHHHHHHEECCCCCCCCCCCCEECCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCC--CCCE-E--EEE
T ss_conf 9987761136579987141062267668997379997885899898999999999999999960999--9857-8--764
Q ss_pred CCCCCCCEEEECCCCHHHHHHHHHH--------------HCCCCCCEEEECCCHHHCCC
Q ss_conf 3346981783011220799999997--------------31388748975320211022
Q gi|254780313|r 106 MEPILGVKFFKFDFLDLDSWEFIRQ--------------AIGGNPDLVLSDMAYPTIGH 150 (227)
Q Consensus 106 ~~~i~gv~~~~gDi~~~~~~~~i~~--------------~l~~~~DlVlSDmapn~SG~ 150 (227)
+ |..-.+|+-...++++.+.+ .+.+.+|||+||+ ++||
T Consensus 282 I----GeEe~KGnel~keA~~LLk~~~~iNFiGNVEGrDI~~G~~DVVVcDG---FtGN 333 (437)
T PRK13845 282 I----GEEECKGNDLSLKTFELLSEEKRFHFAGNCEGRDVLSGDFDVVVCDG---FTGN 333 (437)
T ss_pred C----CCCCCCCCHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCEEEECC---CCCH
T ss_conf 5----66455563999999999860889733155440103578787899578---4018
No 210
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=84.17 E-value=2.9 Score=22.06 Aligned_cols=97 Identities=19% Similarity=0.289 Sum_probs=49.5
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCC----CCCC-EEEECCCCHH-HHHHHHHHHCCCCCCEE
Q ss_conf 3796788850455306899999706878832786411213334----6981-7830112207-99999997313887489
Q gi|254780313|r 66 QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP----ILGV-KFFKFDFLDL-DSWEFIRQAIGGNPDLV 139 (227)
Q Consensus 66 k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~----i~gv-~~~~gDi~~~-~~~~~i~~~l~~~~DlV 139 (227)
++|.+|.=.|+.-=|-+-+..-+.. ...+|+|||+.+-+- -.|+ +++... +. +..+.+.+.-++-+|.+
T Consensus 184 ~~G~tvaV~GlGgVGlaaI~gA~~a---gA~~IiAvD~~~~Kl~~A~~fGAT~~vn~~--~~~~vv~~i~~~T~gG~d~~ 258 (366)
T COG1062 184 EPGDTVAVFGLGGVGLAAIQGAKAA---GAGRIIAVDINPEKLELAKKFGATHFVNPK--EVDDVVEAIVELTDGGADYA 258 (366)
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHC---CCCEEEEEECCHHHHHHHHHCCCCEEECCC--CHHHHHHHHHHHCCCCCCEE
T ss_conf 9998489990427669999989874---885499993777899999863982465540--02548999998627887789
Q ss_pred EECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf 753202110222101578898999889876411487746999930
Q gi|254780313|r 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF 184 (227)
Q Consensus 140 lSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F 184 (227)
.+++|+.. ++.-|+..+.++|..|+==.
T Consensus 259 -----~e~~G~~~------------~~~~al~~~~~~G~~v~iGv 286 (366)
T COG1062 259 -----FECVGNVE------------VMRQALEATHRGGTSVIIGV 286 (366)
T ss_pred -----EECCCCHH------------HHHHHHHHHHCCCEEEEEEC
T ss_conf -----99259989------------99999998743781899952
No 211
>pfam09243 Rsm22 Mitochondrial small ribosomal subunit Rsm22. Rsm22 has been identified as a mitochondrial small ribosomal subunit and is a methyltransferase. In Schizosaccharomyces pombe, Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria.
Probab=83.59 E-value=2.1 Score=23.04 Aligned_cols=46 Identities=20% Similarity=0.248 Sum_probs=31.2
Q ss_pred HHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECC
Q ss_conf 99999864583137967888504553068999997068788327864112
Q gi|254780313|r 54 KLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI 103 (227)
Q Consensus 54 KL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl 103 (227)
=|.||.++-.=|.| .+|||+|++||..+=.+.+..+. --.++.||-
T Consensus 22 vl~Ei~~r~p~f~P-~slLD~GsGpGt~~wAa~~~w~~---l~~~~~vd~ 67 (275)
T pfam09243 22 SLDELAERVPQFAP-LSHLDVGAGPGTALWAASELWPG---LEPATVIDA 67 (275)
T ss_pred HHHHHHHHCCCCCC-CEEEEECCCHHHHHHHHHHHHCC---CEEEEEECC
T ss_conf 99999986799998-75777277579999999988424---768999748
No 212
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=83.16 E-value=3.9 Score=21.27 Aligned_cols=90 Identities=18% Similarity=0.317 Sum_probs=50.7
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC-----CCCCCCEEEECCCCHHHHHHHHHHHCCCCCCEE
Q ss_conf 137967888504553068999997068788327864112133-----346981783011220799999997313887489
Q gi|254780313|r 65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM-----EPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLV 139 (227)
Q Consensus 65 ~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~-----~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlV 139 (227)
++||+.|+=.|++ | ---.|.+....-+ .+|+++|..+- ..+-...++... +++..+.+.+. +|+|
T Consensus 164 ~~pG~~V~I~G~G-G-lGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~lGAd~~i~~~--~~~~~~~~~~~----~d~i 233 (339)
T COG1064 164 VKPGKWVAVVGAG-G-LGHMAVQYAKAMG--AEVIAITRSEEKLELAKKLGADHVINSS--DSDALEAVKEI----ADAI 233 (339)
T ss_pred CCCCCEEEEECCC-H-HHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHCCCEEEECC--CCHHHHHHHHH----CCEE
T ss_conf 9999899998774-8-9999999999869--9699995787799999984882899767--81166776734----7399
Q ss_pred EECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 7532021102221015788989998898764114877469999
Q gi|254780313|r 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK 182 (227)
Q Consensus 140 lSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K 182 (227)
+.=. +. ..++-+++.|++||++|+=
T Consensus 234 i~tv-----~~-------------~~~~~~l~~l~~~G~~v~v 258 (339)
T COG1064 234 IDTV-----GP-------------ATLEPSLKALRRGGTLVLV 258 (339)
T ss_pred EECC-----CH-------------HHHHHHHHHHHCCCEEEEE
T ss_conf 9987-----74-------------5599999986429789997
No 213
>PRK06179 short chain dehydrogenase; Provisional
Probab=82.87 E-value=4 Score=21.20 Aligned_cols=80 Identities=21% Similarity=0.300 Sum_probs=51.2
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEEC--CCCCCCCCCCEEEECCCCHHHHHHHHHHHCC---CCCCEEEE
Q ss_conf 796788850455306899999706878832786411--2133346981783011220799999997313---88748975
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID--ILDMEPILGVKFFKFDFLDLDSWEFIRQAIG---GNPDLVLS 141 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVD--l~~~~~i~gv~~~~gDi~~~~~~~~i~~~l~---~~~DlVlS 141 (227)
+..++|=-||+-|= =.-+++.....| .+|++++ ....++..++.+++.|+++.+..+.+.+..- ++.|+++.
T Consensus 3 ~~KvalITGassGI-G~a~A~~la~~G--~~V~~~~r~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~~~~g~iDiLVN 79 (270)
T PRK06179 3 NKKVALVTGASSGI-GRATAEALARAG--YRVFGTSRNPARATPIPGVELLELDVTDDASVQAAVQEVIARAGRIDVLVN 79 (270)
T ss_pred CCCEEEEECCCCHH-HHHHHHHHHHCC--CEEEEEECCHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99589990724699-999999999879--999999689777305489789991079999999999999998399888998
Q ss_pred CCCHHHCC
Q ss_conf 32021102
Q gi|254780313|r 142 DMAYPTIG 149 (227)
Q Consensus 142 Dmapn~SG 149 (227)
-.+-...|
T Consensus 80 NAGi~~~~ 87 (270)
T PRK06179 80 NAGVGLLG 87 (270)
T ss_pred CCCCCCCC
T ss_conf 98666788
No 214
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=82.73 E-value=4.1 Score=21.17 Aligned_cols=120 Identities=20% Similarity=0.248 Sum_probs=61.5
Q ss_pred CHHHHHHHHHH------HHHHCCCCCCCCEEEEEECCCCH--HHH--HHHHHHCC-CCCCEEEEEECCCC----------
Q ss_conf 44799999999------98645831379678885045530--689--99997068-78832786411213----------
Q gi|254780313|r 47 WRARSAYKLLQ------INEKHQILQSNRRIVDLGSSPGS--WSQ--VAARITGS-NANNTRVVAIDILD---------- 105 (227)
Q Consensus 47 yrsRaafKL~e------Id~kf~l~k~g~~VlDLGaaPGg--WsQ--va~~~~~~-~~~~~~VigVDl~~---------- 105 (227)
||-...|..++ |-++-. -.+--+|.-.||+-|- +|- .+.+..+. ...+..|+|.|+.+
T Consensus 74 FRd~~~f~~l~~~ilP~l~~~~~-~~~~lrIWsagCStGEE~YSlAm~l~e~~~~~~~~~~~I~aTDIs~~~L~~Ar~G~ 152 (264)
T smart00138 74 FRESKHFEALEEKVLPLLIASRR-HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGI 152 (264)
T ss_pred HCCHHHHHHHHHHHHHHHHHHCC-CCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHCC
T ss_conf 64879999999999899998467-79974899777888820899999999974334898569999839999999998689
Q ss_pred -----CCCCC-----------------------CCEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHH
Q ss_conf -----33469-----------------------81783011220799999997313887489753202110222101578
Q gi|254780313|r 106 -----MEPIL-----------------------GVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLR 157 (227)
Q Consensus 106 -----~~~i~-----------------------gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~ 157 (227)
+..++ .|.|-+.|+.++. ..-+++|+|+|= |+- .+-
T Consensus 153 Y~~~~~~~~~~~~~~kyF~~~~~~~~v~~~lr~~v~F~~~NL~~~~-------~~~~~fDlI~CR---NVl------IYF 216 (264)
T smart00138 153 YPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAES-------PPLGDFDLIFCR---NVL------IYF 216 (264)
T ss_pred CCHHHHHCCCHHHHHHHCCCCCCEEEECHHHHCCCCEECCCCCCCC-------CCCCCCEEEEEC---CCE------EEC
T ss_conf 8989984699999998806569889998899850918327899998-------777884199976---323------545
Q ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf 89899988987641148774699993
Q gi|254780313|r 158 TMSLCEAATFFALEMLNIGGDFLVKT 183 (227)
Q Consensus 158 ~~~L~~~al~~A~~~Lk~gG~fV~K~ 183 (227)
.-+.-..++..-...|+|||-+++=-
T Consensus 217 ~~~~~~~vl~~l~~~L~pgG~L~lG~ 242 (264)
T smart00138 217 DEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred CHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 99999999999999838993999827
No 215
>PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=82.56 E-value=4.2 Score=21.13 Aligned_cols=72 Identities=22% Similarity=0.206 Sum_probs=50.4
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 7967888504553068999997068788327864112133346981783011220799999997313887489753
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSD 142 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSD 142 (227)
.|.++|=-|++-| -=+-+++.....| .+|+++|..+- ...-..+++.|+.+.+..+.+.+.+.+++|.++.-
T Consensus 4 ~gK~alVTG~s~G-IG~aia~~la~~G--A~V~~~d~~~~-~~~~~~~~~~D~~~~~~v~~~v~~~~g~id~lvn~ 75 (261)
T PRK12428 4 DGKTIVVTGVASG-IGAEVARLLRFLG--ARVIGLDRRPP-GMTLDGFHQADLGDPASIDAAVAALPGRIDALFNV 75 (261)
T ss_pred CCCEEEEECCCCH-HHHHHHHHHHHCC--CEEEEEECCCC-CCCCCCEEECCCCCHHHHHHHHHHHCCCCCEEEEC
T ss_conf 9988999785779-9999999999869--99999968855-45613176737899999999999837988789986
No 216
>pfam02527 GidB rRNA small subunit methyltransferase G. This is a family of bacterial glucose inhibited division proteins these are probably involved in the regulation of cell devision. GidB has been shown to be a methyltransferase G specific to the rRNA small subunit. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. GidB specifically methylates the N7 position of a guanosine in 16S rRNA.
Probab=81.93 E-value=3.1 Score=21.95 Aligned_cols=104 Identities=20% Similarity=0.303 Sum_probs=60.0
Q ss_pred CCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC--------C---CCCCCCEEEECCCCHHHHHHHHHHHCCCCC
Q ss_conf 96788850455306899999706878832786411213--------3---346981783011220799999997313887
Q gi|254780313|r 68 NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD--------M---EPILGVKFFKFDFLDLDSWEFIRQAIGGNP 136 (227)
Q Consensus 68 g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~--------~---~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~ 136 (227)
+.+++|+|+++| +--+......+. ..++-||-.. + -.+.|+.++...+.+.. ...++
T Consensus 49 ~~~ilDiGSGaG-fPGi~LAI~~p~---~~~~LvEs~~KK~~FL~~v~~~L~L~nv~v~~~R~E~~~--------~~~~~ 116 (184)
T pfam02527 49 RIKVADVGSGAG-FPGIPLAIAFPD---KKLTLLESLLKKINFLEELKKELNLENVTIVHARAEEYQ--------HEEQY 116 (184)
T ss_pred CCEEEECCCCCC-CHHHHHHHHCCC---CEEEEEECHHHHHHHHHHHHHHCCCCCEEEEECCHHHCC--------CCCCC
T ss_conf 986883479888-467999996778---559999282899999999999859997699956044146--------44678
Q ss_pred CEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHC
Q ss_conf 4897532021102221015788989998898764114877469999305999899999998625
Q gi|254780313|r 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200 (227)
Q Consensus 137 DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~~~F 200 (227)
|+|+|=+-.+. ...++++..+++++|.++. +.|....+=+...++.+
T Consensus 117 D~v~aRA~a~l---------------~~ll~~~~~~l~~~g~~i~--~KG~~~~~El~~a~~~~ 163 (184)
T pfam02527 117 DVITSRAVASL---------------NELTEWALPLLKPGGYFLA--YKGKQAEDEIEELDKAC 163 (184)
T ss_pred CEEEECHHCCH---------------HHHHHHHHHHCCCCCEEEE--ECCCCHHHHHHHHHHHH
T ss_conf 78998100579---------------9999999986388989999--88999899999878779
No 217
>KOG1209 consensus
Probab=81.87 E-value=4.4 Score=20.97 Aligned_cols=81 Identities=20% Similarity=0.231 Sum_probs=56.7
Q ss_pred CCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEEC--CCCCCCCC---CCEEEECCCCHHHHHHHH----HHHCCCCCCE
Q ss_conf 96788850455306899999706878832786411--21333469---817830112207999999----9731388748
Q gi|254780313|r 68 NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID--ILDMEPIL---GVKFFKFDFLDLDSWEFI----RQAIGGNPDL 138 (227)
Q Consensus 68 g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVD--l~~~~~i~---gv~~~~gDi~~~~~~~~i----~~~l~~~~Dl 138 (227)
-..||=.||+-||----.++....+ +..|++.- +.+|..+. |...++-|+.+++..-.+ +..-+|+.|+
T Consensus 7 ~k~VlItgcs~GGIG~ala~ef~~~--G~~V~AtaR~~e~M~~L~~~~gl~~~kLDV~~~~~V~~v~~evr~~~~Gkld~ 84 (289)
T KOG1209 7 PKKVLITGCSSGGIGYALAKEFARN--GYLVYATARRLEPMAQLAIQFGLKPYKLDVSKPEEVVTVSGEVRANPDGKLDL 84 (289)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHC--CEEEEEECCCCCHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEE
T ss_conf 9759996057765349999999867--81999970224607667886097058705687277899888886189982688
Q ss_pred EEECCCHHHCCC
Q ss_conf 975320211022
Q gi|254780313|r 139 VLSDMAYPTIGH 150 (227)
Q Consensus 139 VlSDmapn~SG~ 150 (227)
.+-..+..||+-
T Consensus 85 L~NNAG~~C~~P 96 (289)
T KOG1209 85 LYNNAGQSCTFP 96 (289)
T ss_pred EECCCCCCCCCC
T ss_conf 871799876552
No 218
>KOG4169 consensus
Probab=81.76 E-value=4.4 Score=20.94 Aligned_cols=152 Identities=15% Similarity=0.226 Sum_probs=75.3
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEEC-----------CCCCCCCCCCEEEECCCCHHH----HHHHHHHH
Q ss_conf 796788850455306899999706878832786411-----------213334698178301122079----99999973
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID-----------ILDMEPILGVKFFKFDFLDLD----SWEFIRQA 131 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVD-----------l~~~~~i~gv~~~~gDi~~~~----~~~~i~~~ 131 (227)
.|.++|=.|.+-|==.|....+.. ++-+++++| |+.+.|..-+.|++.|+++.. +.+++...
T Consensus 4 tGKna~vtggagGIGl~~sk~Ll~---kgik~~~i~~~~En~~a~akL~ai~p~~~v~F~~~DVt~~~~~~~~f~ki~~~ 80 (261)
T KOG4169 4 TGKNALVTGGAGGIGLATSKALLE---KGIKVLVIDDSEENPEAIAKLQAINPSVSVIFIKCDVTNRGDLEAAFDKILAT 80 (261)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHH---CCCHHEEEHHHHHCHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 374589963786366999999997---67154061040147899998860399843999980120078899999999987
Q ss_pred CCCCCCEEEECCCHHHCCCCCCHHHHHHHH------HHHHHHHHHHCC-CCCCEEEEEEE--CCCC-HHHHHHHHHHHCC
Q ss_conf 138874897532021102221015788989------998898764114-87746999930--5999-8999999986258
Q gi|254780313|r 132 IGGNPDLVLSDMAYPTIGHRKIDHLRTMSL------CEAATFFALEML-NIGGDFLVKTF--QGGT-TNDILCLLKKHFQ 201 (227)
Q Consensus 132 l~~~~DlVlSDmapn~SG~~~~D~~~~~~L------~~~al~~A~~~L-k~gG~fV~K~F--~G~~-~~~l~~~l~~~F~ 201 (227)
+ +..|+++--..-+. .+++++-...+| ...+|.+..+-- -+|| .|+-+= -|-+ ...+--..-..+.
T Consensus 81 f-g~iDIlINgAGi~~--dkd~e~Ti~vNLtgvin~T~~alpyMdk~~gG~GG-iIvNmsSv~GL~P~p~~pVY~AsKaG 156 (261)
T KOG4169 81 F-GTIDILINGAGILD--DKDWERTINVNLTGVINGTQLALPYMDKKQGGKGG-IIVNMSSVAGLDPMPVFPVYAASKAG 156 (261)
T ss_pred H-CCEEEEECCCCCCC--CHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCC-EEEEECCCCCCCCCCCCHHHHHCCCC
T ss_conf 0-94579971664446--12077865022212003366630445543499981-89970110266766420232320011
Q ss_pred EEEEECCC----CCCCCCCEEEEEECCC
Q ss_conf 46997686----6575582498983075
Q gi|254780313|r 202 KVIHVKPV----ASRAESVEMFLLAKGF 225 (227)
Q Consensus 202 ~V~~~KP~----aSR~~S~E~Ylv~~gf 225 (227)
-|-+++-. -=+..---++.||-||
T Consensus 157 VvgFTRSla~~ayy~~sGV~~~avCPG~ 184 (261)
T KOG4169 157 VVGFTRSLADLAYYQRSGVRFNAVCPGF 184 (261)
T ss_pred EEEEEHHHHHHHHHHHCCEEEEEECCCC
T ss_conf 5642054224566765587999977873
No 219
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=81.04 E-value=4.7 Score=20.78 Aligned_cols=95 Identities=24% Similarity=0.319 Sum_probs=50.8
Q ss_pred EEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC--CC----C--CC---CEEEECCCCHHHHHHHHHHHCC-CCCCE
Q ss_conf 888504553068999997068788327864112133--34----6--98---1783011220799999997313-88748
Q gi|254780313|r 71 IVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM--EP----I--LG---VKFFKFDFLDLDSWEFIRQAIG-GNPDL 138 (227)
Q Consensus 71 VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~--~~----i--~g---v~~~~gDi~~~~~~~~i~~~l~-~~~Dl 138 (227)
++|+||++|.++ +........ ..++|+|+.+. .. . .+ +.++.+|.... ...... ..+|+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~---~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~ 122 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRG---AYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGG-----VLPFEDSASFDL 122 (257)
T ss_pred EEEEECCCCHHH-HHHHHHCCC---CEEEEECCCHHHHHHHHHHHCCCCCCCEEEEECCCCCC-----CCCCCCCCEEEE
T ss_conf 588603854689-999973578---57999368889999999863004566357676042135-----567566665778
Q ss_pred EEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECC
Q ss_conf 975320211022210157889899988987641148774699993059
Q gi|254780313|r 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG 186 (227)
Q Consensus 139 VlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G 186 (227)
+.+...... .+ ....+..+...|+++|.+++.....
T Consensus 123 ~~~~~~~~~-----~~-------~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 123 VISLLVLHL-----LP-------PAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred EEECCHHHH-----HH-------HHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 986123443-----02-------8999999998707886899996244
No 220
>KOG2651 consensus
Probab=80.58 E-value=1.5 Score=23.82 Aligned_cols=44 Identities=20% Similarity=0.202 Sum_probs=32.1
Q ss_pred HHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECC
Q ss_conf 9999864583137967888504553068999997068788327864112
Q gi|254780313|r 55 LLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI 103 (227)
Q Consensus 55 L~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl 103 (227)
|-|+..+-..+-+-..|+|+|+++|--+++.+=.. +-.|.|||-
T Consensus 141 lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y-----~lsV~aIeg 184 (476)
T KOG2651 141 LSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGY-----GLSVKAIEG 184 (476)
T ss_pred HHHHHHHHHHHCCCCHHHCCCCCCCHHHHHHHHCC-----CCEEEEECC
T ss_conf 99999988765187114115777328999986426-----816999646
No 221
>KOG2920 consensus
Probab=80.26 E-value=5 Score=20.62 Aligned_cols=134 Identities=16% Similarity=0.164 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHC--CCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEECCCCHHHHHHH-
Q ss_conf 999999998645--83137967888504553068999997068788327864112133346981783011220799999-
Q gi|254780313|r 51 SAYKLLQINEKH--QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF- 127 (227)
Q Consensus 51 aafKL~eId~kf--~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~i~gv~~~~gDi~~~~~~~~- 127 (227)
|+.=+..|-+++ ++.-.+.+||||||.+|==.-++...- . .+++.++... ......+-+.........
T Consensus 98 S~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~-----~---~~~~fqD~na-~vl~~~t~pn~~~~~~~~~ 168 (282)
T KOG2920 98 SVDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKG-----A---VSVHFQDFNA-EVLRLVTLPNILVNSHAGV 168 (282)
T ss_pred HHHHHHHHHHHHHHHEEECCCEEEECCCCCCCCCHHHHHHC-----C---CEEEEEECCH-HHEEEECCCCEECCHHHHH
T ss_conf 79999999987533367447556863786456416666403-----5---3233473351-1246521465330200102
Q ss_pred HHHHCCCCCCEEEE---CCCHHHCCCCCCHHHHHHHHHH-----HH--HHHHHHCCCCCCEEE--EE-EEC--CCCHHHH
Q ss_conf 99731388748975---3202110222101578898999-----88--987641148774699--99-305--9998999
Q gi|254780313|r 128 IRQAIGGNPDLVLS---DMAYPTIGHRKIDHLRTMSLCE-----AA--TFFALEMLNIGGDFL--VK-TFQ--GGTTNDI 192 (227)
Q Consensus 128 i~~~l~~~~DlVlS---Dmapn~SG~~~~D~~~~~~L~~-----~a--l~~A~~~Lk~gG~fV--~K-~F~--G~~~~~l 192 (227)
...-...--+++.+ |+-.|.|+..-.|-..+-+-++ .. +..-...+++.|.+. .| .+- |....+|
T Consensus 169 ~~~e~~~~~~i~~s~l~dg~~~~t~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~aAK~~yFgVgg~i~~f 248 (282)
T KOG2920 169 EEKENHKVDEILNSLLSDGVFNHTERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVAAKKLYFGVGGGIEEF 248 (282)
T ss_pred HHHHCCCCEECCCCCCCCCHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHH
T ss_conf 34413652121234332201000033111221103555176304556766665227765025665476614757213543
Q ss_pred H
Q ss_conf 9
Q gi|254780313|r 193 L 193 (227)
Q Consensus 193 ~ 193 (227)
.
T Consensus 249 ~ 249 (282)
T KOG2920 249 N 249 (282)
T ss_pred C
T ss_conf 3
No 222
>PRK05331 putative glycerol-3-phosphate acyltransferase PlsX; Provisional
Probab=79.72 E-value=2.1 Score=23.01 Aligned_cols=103 Identities=22% Similarity=0.370 Sum_probs=47.3
Q ss_pred CHHHHHHHHHCCHHHHHHHHHHHHH--HCCC---C--CCC--CEEEEEECCCCHHHHHHH-----------HHHCCCCCC
Q ss_conf 9999999881844799999999986--4583---1--379--678885045530689999-----------970687883
Q gi|254780313|r 36 DPYVQRAQLEGWRARSAYKLLQINE--KHQI---L--QSN--RRIVDLGSSPGSWSQVAA-----------RITGSNANN 95 (227)
Q Consensus 36 D~y~~~Ak~~gyrsRaafKL~eId~--kf~l---~--k~g--~~VlDLGaaPGgWsQva~-----------~~~~~~~~~ 95 (227)
|-++---..--+-+=|.|.|.-|.- |--| + .++ ..+||+||-+--=.++.. ...+.. +
T Consensus 97 da~VSaGnTGAl~a~a~~~l~~i~gi~RPaia~~~Pt~~~~~~~llD~GAN~~~~~~~L~qfA~mGs~ya~~v~~i~--~ 174 (317)
T PRK05331 97 DACVSAGNTGALMAAALFVLGRLPGIDRPAIATILPTLNGGGTVLLDLGANVDCKPEHLVQFAVMGSVYAEAVLGIE--N 174 (317)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCC--C
T ss_conf 78995473899999999986120587764101114357997379996774787798999999999999999847999--9
Q ss_pred EEEEEECCCCCCCCCCCEEEECCCCHHHHHHHHH--------------HHCCCCCCEEEECCCHHHCCC
Q ss_conf 2786411213334698178301122079999999--------------731388748975320211022
Q gi|254780313|r 96 TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIR--------------QAIGGNPDLVLSDMAYPTIGH 150 (227)
Q Consensus 96 ~~VigVDl~~~~~i~gv~~~~gDi~~~~~~~~i~--------------~~l~~~~DlVlSDmapn~SG~ 150 (227)
++| | |+.+ |..-.+|+-.-.++.+.+. +.+.+.+|||+||+ .|||
T Consensus 175 PrV-g--LLNi----G~E~~KG~~~~k~a~~lL~~~~~~nf~G~iEg~di~~g~~DVvV~DG---FtGN 233 (317)
T PRK05331 175 PRV-G--LLNI----GEEEIKGNELVKEAYELLKAAPSINFIGNVEGRDILKGTADVVVCDG---FVGN 233 (317)
T ss_pred CEE-E--ECCC----CCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCEEEECC---CCCH
T ss_conf 828-7--6158----76566767999999999964999805801040114689997899289---5018
No 223
>PRK10846 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional
Probab=79.65 E-value=5.2 Score=20.50 Aligned_cols=66 Identities=18% Similarity=0.154 Sum_probs=46.2
Q ss_pred EEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC--EEEEEEECCCCHHHHHHHHHHHCCEEEEECCCCCCCCCC
Q ss_conf 975320211022210157889899988987641148774--699993059998999999986258469976866575582
Q gi|254780313|r 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG--DFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESV 216 (227)
Q Consensus 139 VlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG--~fV~K~F~G~~~~~l~~~l~~~F~~V~~~KP~aSR~~S~ 216 (227)
|+-|+|=|..|.. .|.. .+.-+.+++ .+|+=+....+...++..+...++.+..+.+...|..+.
T Consensus 299 iiLDgAHN~~aa~--------~L~~-----~l~~~~~~~k~~~V~g~l~dKD~~~~l~~L~~~~d~~~~~~~~~~Ra~~~ 365 (416)
T PRK10846 299 VIFDVAHNPHAAE--------YLTG-----RLKALPKNGRVLAVIGMLHDKDIAGTLAWLKSVVDDWYCAPLEGPRGATA 365 (416)
T ss_pred EEEECCCCHHHHH--------HHHH-----HHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCH
T ss_conf 7777785999999--------9999-----99960779968999841378999999998664468999958999777999
Q ss_pred E
Q ss_conf 4
Q gi|254780313|r 217 E 217 (227)
Q Consensus 217 E 217 (227)
|
T Consensus 366 ~ 366 (416)
T PRK10846 366 E 366 (416)
T ss_pred H
T ss_conf 9
No 224
>pfam01358 PARP_regulatory Poly A polymerase regulatory subunit.
Probab=79.44 E-value=5.3 Score=20.46 Aligned_cols=98 Identities=20% Similarity=0.239 Sum_probs=57.2
Q ss_pred CCHHHHHHHHH--HH-----HHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC----CCCCCCEE
Q ss_conf 84479999999--99-----864583137967888504553068999997068788327864112133----34698178
Q gi|254780313|r 46 GWRARSAYKLL--QI-----NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM----EPILGVKF 114 (227)
Q Consensus 46 gyrsRaafKL~--eI-----d~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~----~~i~gv~~ 114 (227)
.++...--||+ || ..+++++....+||=+|+|||.-.-+..+.-..-|..-+=+=+|..+- +.+.+|.+
T Consensus 30 kfp~qGQlKLLl~El~FLs~l~~~~~l~g~~~IvYIGSapG~HI~~L~~~f~~~g~~IkW~LiD~r~h~~~L~~l~nV~l 109 (295)
T pfam01358 30 KLPYQGQLKLLLGELFFLNKLIRHNILDGIITVVYIGSAPGYHIRYLRDHFSDLGVIIKWMLIDGRGHDPSLEGLSDVSI 109 (295)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCHHHHCCCCEEE
T ss_conf 69886308999989999889987564468708999736887418999999997298579999769854467643577470
Q ss_pred EECCCCHHHHHHHHHHHCCCCCCEEEECCCH
Q ss_conf 3011220799999997313887489753202
Q gi|254780313|r 115 FKFDFLDLDSWEFIRQAIGGNPDLVLSDMAY 145 (227)
Q Consensus 115 ~~gDi~~~~~~~~i~~~l~~~~DlVlSDmap 145 (227)
+. .++++.....+++..+.+ =+.+||+-.
T Consensus 110 ~~-~f~dE~~i~~lk~~~~~~-iilISDIRS 138 (295)
T pfam01358 110 VT-RFVDEKYLRLLKNQLNLK-ILLISDIRS 138 (295)
T ss_pred HH-HHCCHHHHHHHHHCCCCC-EEEEEECCC
T ss_conf 26-546899999997115771-799952344
No 225
>PRK13846 putative glycerol-3-phosphate acyltransferase PlsX; Provisional
Probab=78.70 E-value=2.6 Score=22.40 Aligned_cols=92 Identities=15% Similarity=0.249 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHHHH--HCCC------CCCCCEEEEEECCCCHHH----HHH-------HHHHCCCCCCEEEEEECCCCCC
Q ss_conf 44799999999986--4583------137967888504553068----999-------9970687883278641121333
Q gi|254780313|r 47 WRARSAYKLLQINE--KHQI------LQSNRRIVDLGSSPGSWS----QVA-------ARITGSNANNTRVVAIDILDME 107 (227)
Q Consensus 47 yrsRaafKL~eId~--kf~l------~k~g~~VlDLGaaPGgWs----Qva-------~~~~~~~~~~~~VigVDl~~~~ 107 (227)
+-+=|.|-|--|.. +--| .+....+||+||-+---. |+| ....+. .+++| |+ +.+
T Consensus 110 ~ma~a~~~lg~i~gv~RPaia~~~Pt~~g~~~lLD~GANvd~~p~~L~qFA~MGs~ya~~~~~~--~~PrV-gL--LNi- 183 (316)
T PRK13846 110 LVTLARAKIPMFPAVPRPALLVSVPTMRGFAVILDVGANVSVNPEEMVGFARMGLAYRQCLGSN--QPPTI-GL--LNI- 183 (316)
T ss_pred HHHHHHHHHHCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCC--CCCEE-EE--EEC-
T ss_conf 9999999870326987454533230789977999789787669999999999999999984699--99869-98--625-
Q ss_pred CCCCCEEEECCCCHHHHHHHHHHH--------------CCCCCCEEEECCCHHHCCC
Q ss_conf 469817830112207999999973--------------1388748975320211022
Q gi|254780313|r 108 PILGVKFFKFDFLDLDSWEFIRQA--------------IGGNPDLVLSDMAYPTIGH 150 (227)
Q Consensus 108 ~i~gv~~~~gDi~~~~~~~~i~~~--------------l~~~~DlVlSDmapn~SG~ 150 (227)
|..-.+|+-...++.+.+.+. +.+.+|||+||+ +|||
T Consensus 184 ---G~E~~KG~~~~kea~~LL~~~~~~nF~GnvEg~di~~g~~DVvV~DG---FtGN 234 (316)
T PRK13846 184 ---GSEERKGTEAHRQTFRMLRETFGSAFLGNIESGDVFSGKVDIVVTDG---FTGN 234 (316)
T ss_pred ---CCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCEEEECC---CHHH
T ss_conf ---66454658999999999860866663665341325799984899288---4319
No 226
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=78.65 E-value=5.6 Score=20.31 Aligned_cols=47 Identities=21% Similarity=0.237 Sum_probs=25.5
Q ss_pred CEEEEEECCCC-----CCCCCCCEEEECCCC-HHHHHHHHHHHCCCCCCEEEECCCH
Q ss_conf 32786411213-----334698178301122-0799999997313887489753202
Q gi|254780313|r 95 NTRVVAIDILD-----MEPILGVKFFKFDFL-DLDSWEFIRQAIGGNPDLVLSDMAY 145 (227)
Q Consensus 95 ~~~VigVDl~~-----~~~i~gv~~~~gDi~-~~~~~~~i~~~l~~~~DlVlSDmap 145 (227)
+..|+++|+.. ....+++.+++||++ +.+..+ ..+ .++|+|++-+|.
T Consensus 26 ~~~V~~~d~~~~~~~~~~~~~~~~~~~gDi~~~~~~~~---~~~-~~~D~V~HlAa~ 78 (347)
T PRK11908 26 DWEVYGMDMQTDRLGDLVNHPRMHFFEGDITINKEWIE---YHV-KKCDVVLPLVAI 78 (347)
T ss_pred CCEEEEEECCCCCHHHHCCCCCEEEEECCCCCCHHHHH---HHH-CCCCEEEEEHHC
T ss_conf 97899997997636775579985999775446999999---766-059889752000
No 227
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=78.52 E-value=5.7 Score=20.28 Aligned_cols=99 Identities=24% Similarity=0.325 Sum_probs=47.8
Q ss_pred HHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC--CCC--------CCCEEEECCCCHHHHHHH
Q ss_conf 9864583137967888504553068999997068788327864112133--346--------981783011220799999
Q gi|254780313|r 58 INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM--EPI--------LGVKFFKFDFLDLDSWEF 127 (227)
Q Consensus 58 Id~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~--~~i--------~gv~~~~gDi~~~~~~~~ 127 (227)
|+++... -.|.+|||+|+++|==+- |+-+.|.. .|++.|+-|. ..+ -++.+...|+..
T Consensus 71 i~~~Pet-VrgkrVLd~gagsgLvaI-Aaa~aGA~----~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g------ 138 (218)
T COG3897 71 IDDHPET-VRGKRVLDLGAGSGLVAI-AAARAGAA----EVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG------ 138 (218)
T ss_pred HHCCCCC-CCCCEEEECCCCCCHHHH-HHHHHHHH----HHHHCCCCHHHHHHHHCCHHHCCCEEEEEECCCCC------
T ss_conf 7608631-036532441566670889-99985037----88762788478888530622156216774313368------
Q ss_pred HHHHCCCCCCEEEE-CCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECC
Q ss_conf 99731388748975-320211022210157889899988987641148774699993059
Q gi|254780313|r 128 IRQAIGGNPDLVLS-DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG 186 (227)
Q Consensus 128 i~~~l~~~~DlVlS-Dmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G 186 (227)
-+..+|+||. |.- .+|.-. ...+. ....|...|+-|+ +|+-
T Consensus 139 ----~~~~~Dl~LagDlf--------y~~~~a----~~l~~-~~~~l~~~g~~vl-vgdp 180 (218)
T COG3897 139 ----SPPAFDLLLAGDLF--------YNHTEA----DRLIP-WKDRLAEAGAAVL-VGDP 180 (218)
T ss_pred ----CCCCEEEEEEECEE--------CCCHHH----HHHHH-HHHHHHHCCCEEE-EECC
T ss_conf ----98640389850300--------283588----98899-9999985797799-7289
No 228
>pfam02504 FA_synthesis Fatty acid synthesis protein. The plsX gene is part of the bacterial fab gene cluster which encodes several key fatty acid biosynthetic enzymes. The exact function of the plsX protein in fatty acid synthesis is unknown.
Probab=77.96 E-value=2.7 Score=22.30 Aligned_cols=93 Identities=17% Similarity=0.313 Sum_probs=43.7
Q ss_pred CCHHHHHHHHHHHHH--HCCCCC-----CC--CEEEEEECCCCHHHHHHHH-----------HHCCCCCCEEEEEECCCC
Q ss_conf 844799999999986--458313-----79--6788850455306899999-----------706878832786411213
Q gi|254780313|r 46 GWRARSAYKLLQINE--KHQILQ-----SN--RRIVDLGSSPGSWSQVAAR-----------ITGSNANNTRVVAIDILD 105 (227)
Q Consensus 46 gyrsRaafKL~eId~--kf~l~k-----~g--~~VlDLGaaPGgWsQva~~-----------~~~~~~~~~~VigVDl~~ 105 (227)
-+.+=|.|.|.-|.- +--|.- .| ..+||+||.+--=.+...+ ..+. .+++| | |+.
T Consensus 104 A~~a~a~~~l~~i~gi~RPai~~~~Pt~~g~~~~lLD~GANv~~~~~~L~qFA~mG~~ya~~~~~~--~~PrV-g--LLN 178 (322)
T pfam02504 104 ALMALAMLRLGRIKGITRPALGTELPTVNGKFTVLLDVGANVDCKPKELVQFALMGSVYAQSLLGI--DSPRV-G--LLN 178 (322)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCC--CCCCE-E--EEE
T ss_conf 999999998850058886446440455799758998478787779899999999999999997299--99808-7--875
Q ss_pred CCCCCCCEEEECCCCHHHHHHHHHH--------------HCCCCCCEEEECCCHHHCCC
Q ss_conf 3346981783011220799999997--------------31388748975320211022
Q gi|254780313|r 106 MEPILGVKFFKFDFLDLDSWEFIRQ--------------AIGGNPDLVLSDMAYPTIGH 150 (227)
Q Consensus 106 ~~~i~gv~~~~gDi~~~~~~~~i~~--------------~l~~~~DlVlSDmapn~SG~ 150 (227)
+ |..-.+|+-.-.++.+.+.+ .+.+.+|||+||+ .|||
T Consensus 179 i----G~E~~KG~~~~kea~~lL~~~~~~nf~GnvEg~~i~~g~~DVvV~DG---F~GN 230 (322)
T pfam02504 179 I----GEEEVKGNDLHKQTFKLLKATPGYNFLGNVEGRDILDGVVDVIVCDG---FTGN 230 (322)
T ss_pred C----CCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCEEEECC---CCCH
T ss_conf 5----65454653999999999982899844500130105789984899488---4009
No 229
>KOG3924 consensus
Probab=77.49 E-value=3.7 Score=21.45 Aligned_cols=92 Identities=17% Similarity=0.209 Sum_probs=59.3
Q ss_pred HHHCCHHHHHHHHHHHHHHCCC-------CCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC----C-----
Q ss_conf 8818447999999999864583-------13796788850455306899999706878832786411213----3-----
Q gi|254780313|r 43 QLEGWRARSAYKLLQINEKHQI-------LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD----M----- 106 (227)
Q Consensus 43 k~~gyrsRaafKL~eId~kf~l-------~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~----~----- 106 (227)
..++|+|=+.+++-|++..+-. +.|++...|||++=|+---.++...+... -+|+.+.+ +
T Consensus 161 L~~hYk~~ss~~YGE~~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~----svG~eim~~pS~~a~~~~ 236 (419)
T KOG3924 161 LNQHYKSFSSETYGETQLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKK----SVGFEIMDKPSQCAELNK 236 (419)
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC----CCCEEEECCCHHHHHHHH
T ss_conf 9875235566305553399999999996369887234777651023678887534001----034054158478899999
Q ss_pred -----------CCCCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf -----------346981783011220799999997313887489753
Q gi|254780313|r 107 -----------EPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSD 142 (227)
Q Consensus 107 -----------~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSD 142 (227)
..+.-+.+++|+++++..+.+|.. .+++|++-
T Consensus 237 ~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~eI~~----eatvi~vN 279 (419)
T KOG3924 237 EEFKKLMKHFGKKPNKIETIHGSFLDPKRVTEIQT----EATVIFVN 279 (419)
T ss_pred HHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHH----CCEEEEEE
T ss_conf 99999999847786721403635478888998863----05288870
No 230
>PRK01581 speE spermidine synthase; Validated
Probab=76.57 E-value=6.4 Score=19.94 Aligned_cols=99 Identities=16% Similarity=0.131 Sum_probs=55.7
Q ss_pred CCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC-CC-----------------CCCCEEEECCCCHHHHHHHHH
Q ss_conf 967888504553068999997068788327864112133-34-----------------698178301122079999999
Q gi|254780313|r 68 NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM-EP-----------------ILGVKFFKFDFLDLDSWEFIR 129 (227)
Q Consensus 68 g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~-~~-----------------i~gv~~~~gDi~~~~~~~~i~ 129 (227)
-.+||=||.+-|- .+.+...-.. --.|.-|||-|. .. -+.|+.+.+|. ...+.
T Consensus 140 ~~rVLILGGGDGL---AlREVLKyp~-Ve~VTLVDLDP~mt~Lar~~p~L~~LN~~AL~DPRV~Vvn~DA-----f~wL~ 210 (363)
T PRK01581 140 PKRVLILGGGDGL---ALREVLKYET-VLHVDLVDLDGSMIDMARNVPELVSLNKSAFFDNRVNTHVCDA-----KEFLS 210 (363)
T ss_pred CCEEEEEECCCHH---HHHHHHCCCC-CCEEEEEECCHHHHHHHHHCHHHHHHHHHHCCCCCEEEEECCH-----HHHHH
T ss_conf 7738998076439---9999871798-5627899569999998751979987512001498049992108-----99986
Q ss_pred HHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHH-HHHHHHCCCCCCEEEEEE
Q ss_conf 731388748975320211022210157889899988-987641148774699993
Q gi|254780313|r 130 QAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAA-TFFALEMLNIGGDFLVKT 183 (227)
Q Consensus 130 ~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~a-l~~A~~~Lk~gG~fV~K~ 183 (227)
+ -...||+|+-|+ |+.+ +.....|--.. -.+....|.++|.+|+-.
T Consensus 211 ~-~~~~FDvIIVDl-PDP~------n~~L~KLYS~eFY~Ll~~~La~dG~~vVQS 257 (363)
T PRK01581 211 S-PSSLYDVIIIDF-PDPA------TELLSTLYTSELFARIATFLTEDGAFVCQS 257 (363)
T ss_pred C-CCCCCCEEEEEC-CCCC------CHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 1-675442899958-9998------624666735999999998619885399960
No 231
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=76.27 E-value=5.1 Score=20.58 Aligned_cols=99 Identities=15% Similarity=0.118 Sum_probs=57.7
Q ss_pred EEEEEECCCCCCCCCCCEEEECCCCHHHHHHH-HHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 27864112133346981783011220799999-99731388748975320211022210157889899988987641148
Q gi|254780313|r 96 TRVVAIDILDMEPILGVKFFKFDFLDLDSWEF-IRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLN 174 (227)
Q Consensus 96 ~~VigVDl~~~~~i~gv~~~~gDi~~~~~~~~-i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk 174 (227)
|.|+|...-.++--.+...+.||+......-. -.+.. ...|+++.+. |-|.....+. -+.-..-++.....+.
T Consensus 141 GHilGsa~~~le~~~~~ilytGD~~~~~~~l~~~a~~~-~~~DvLI~Es---TYg~~~~~~r--~~~e~~f~~~v~~~l~ 214 (427)
T COG1236 141 GHILGSAAILLEVDGGRILYTGDVKRRKDRLLNGAELP-PCIDVLIVES---TYGDRLHPNR--DEVERRFIESVKAALE 214 (427)
T ss_pred CCCCCEEEEEEEECCCEEEEEECCCCCCCCCCCCCCCC-CCCCEEEEEC---CCCCCCCCCH--HHHHHHHHHHHHHHHH
T ss_conf 97410279999968947999823677778777776778-8887899806---5588778887--8999999999999875
Q ss_pred CCCEEEEEEECCCCHHHHHHHHHHHC
Q ss_conf 77469999305999899999998625
Q gi|254780313|r 175 IGGDFLVKTFQGGTTNDILCLLKKHF 200 (227)
Q Consensus 175 ~gG~fV~K~F~G~~~~~l~~~l~~~F 200 (227)
+||++|+=+|.-.-+++++..+..+-
T Consensus 215 ~GG~vlipafa~graQEll~~L~~~~ 240 (427)
T COG1236 215 RGGTVLIPAFALGRAQELLLILRELG 240 (427)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 79849994056708999999999752
No 232
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=76.20 E-value=3 Score=22.03 Aligned_cols=34 Identities=21% Similarity=0.498 Sum_probs=21.9
Q ss_pred HHCCHH-HHHHHHHHHHHHCCCCCCCCEEEEEECCCCH
Q ss_conf 818447-9999999998645831379678885045530
Q gi|254780313|r 44 LEGWRA-RSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80 (227)
Q Consensus 44 ~~gyrs-RaafKL~eId~kf~l~k~g~~VlDLGaaPGg 80 (227)
-..|-| || -|.|+++.-.=|.|. ++||+|++||-
T Consensus 92 p~~Yasv~a--sL~~L~~~~~dfapq-siLDvG~GPgt 126 (484)
T COG5459 92 PQTYASVRA--SLDELQKRVPDFAPQ-SILDVGAGPGT 126 (484)
T ss_pred HHHHHHHHH--HHHHHHHHCCCCCCC-HHHCCCCCCCH
T ss_conf 578999999--999999748886861-02003778752
No 233
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=76.07 E-value=6.6 Score=19.85 Aligned_cols=148 Identities=17% Similarity=0.220 Sum_probs=73.4
Q ss_pred CEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCC-C-EEEEC-CCCHHHHHHHHHHHCC-CCCCEEEECCC
Q ss_conf 6788850455306899999706878832786411213334698-1-78301-1220799999997313-88748975320
Q gi|254780313|r 69 RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILG-V-KFFKF-DFLDLDSWEFIRQAIG-GNPDLVLSDMA 144 (227)
Q Consensus 69 ~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~i~g-v-~~~~g-Di~~~~~~~~i~~~l~-~~~DlVlSDma 144 (227)
++||=.|++-| +.+.+-....+.+..|+|+|..+..|-.. + .++.. ...+++..+.+.+.+. .++|+|+.-.-
T Consensus 2 ~nILvt~~G~~---~~ii~~lk~~~~~~~Vi~~D~~~~a~~~~~aD~~y~~P~~~d~~y~~~ll~i~~~~~id~iiP~~d 78 (325)
T PRK12767 2 MNILVTSAGRR---VQLVKALKKSLLGGKVIGADISPLAPALYFADKFYVVPKVTDPNYIDALLDICKKENIDALIPLID 78 (325)
T ss_pred CEEEEECCCCH---HHHHHHHHHCCCCCEEEEECCCCCCCCHHHCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEECCC
T ss_conf 48999867868---999999997699859999689989953445488998788898789999999999879999997785
Q ss_pred HH---HC---------CCCCC-HHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHCCEEEEECCCCC
Q ss_conf 21---10---------22210-1578898999889876411487746999930599989999999862584699768665
Q gi|254780313|r 145 YP---TI---------GHRKI-DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVAS 211 (227)
Q Consensus 145 pn---~S---------G~~~~-D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~~~F~~V~~~KP~aS 211 (227)
+. .+ |.+.. -....+++|..=. .....|+..|.=+-+.+.-....++.......+.-=-++||..+
T Consensus 79 ~El~~la~~~~~l~~~gi~v~~~~~e~i~~~~DK~-~~~~~l~~~gip~P~t~~~~~~~~~~~~~~~~~~fP~vvKP~~g 157 (325)
T PRK12767 79 PELPLLAQHRDEFKEIGVKVLVSSKEVIEICNDKW-LTYEFLKENGINTPKSYLPEDLEDLLKALAEELGFPLIVKPRDG 157 (325)
T ss_pred HHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHCHH-HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 02668999999999679989569799999854999-99999997599989820558999999999865699669853567
Q ss_pred CCCCCEEEEE
Q ss_conf 7558249898
Q gi|254780313|r 212 RAESVEMFLL 221 (227)
Q Consensus 212 R~~S~E~Ylv 221 (227)
. .|+.++++
T Consensus 158 ~-gs~Gv~~i 166 (325)
T PRK12767 158 S-GSIGVFKV 166 (325)
T ss_pred C-CCCCEEEE
T ss_conf 8-87754997
No 234
>COG0416 PlsX Fatty acid/phospholipid biosynthesis enzyme [Lipid metabolism]
Probab=75.52 E-value=2.5 Score=22.56 Aligned_cols=162 Identities=17% Similarity=0.273 Sum_probs=74.0
Q ss_pred HHHHHHHHCCCHHHHHHHHHC---------CHHHHHHHHHHHHH--HCCC-------CCCCCEEEEEECCCCHHHHHHHH
Q ss_conf 799999640899999998818---------44799999999986--4583-------13796788850455306899999
Q gi|254780313|r 26 SRDWLNRHINDPYVQRAQLEG---------WRARSAYKLLQINE--KHQI-------LQSNRRIVDLGSSPGSWSQVAAR 87 (227)
Q Consensus 26 s~~W~~r~~~D~y~~~Ak~~g---------yrsRaafKL~eId~--kf~l-------~k~g~~VlDLGaaPGgWsQva~~ 87 (227)
|..|+.=. +||+-+.+. +-+=|-|+|--|.. |--| -+.+..+||+||--..=.++..+
T Consensus 83 sSM~~A~~----lVkeg~ADa~VSAGnTGAlma~a~~~lg~i~gI~RPAi~~~~Pt~~~~~~~~LDvGANvd~~~~~L~q 158 (338)
T COG0416 83 SSMRVALD----LVKEGKADACVSAGNTGALMALALLKLGRIKGIDRPALATLLPTIDGGKTVVLDVGANVDCKPEHLVQ 158 (338)
T ss_pred CHHHHHHH----HHHCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCHHHHHH
T ss_conf 57999999----98567677798468469999999987454778885511254435579814999678878889999999
Q ss_pred ----------HHCCCCCCEEEEEECCCCCCCCCCCEEEECCCCHHHHHHHHHH--------------HCCCCCCEEEECC
Q ss_conf ----------7068788327864112133346981783011220799999997--------------3138874897532
Q gi|254780313|r 88 ----------ITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQ--------------AIGGNPDLVLSDM 143 (227)
Q Consensus 88 ----------~~~~~~~~~~VigVDl~~~~~i~gv~~~~gDi~~~~~~~~i~~--------------~l~~~~DlVlSDm 143 (227)
.+... .+++| | |+.+ |..-++|+=...++.+.+++ .+.|.+|+|+||+
T Consensus 159 fA~MG~~ya~~v~~~-~~PrV-g--LLNI----G~Ee~KG~e~~kea~~lLk~~~~~nF~GnvEg~di~~G~~DVvV~DG 230 (338)
T COG0416 159 FALMGSAYAEKVLGI-KNPRV-G--LLNI----GTEEIKGNELVKEAYELLKETPLINFIGNVEGRDILDGTVDVVVTDG 230 (338)
T ss_pred HHHHHHHHHHHHCCC-CCCCE-E--EEEC----CCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCEEEECC
T ss_conf 999999999996288-99967-8--8756----55354587899999999974877753652254212368777899579
Q ss_pred CHHHCCCCCC---------------HHHHH---HHHHHHHHHHHHHCC-------CCCCEE-------EEEEECCCCHHH
Q ss_conf 0211022210---------------15788---989998898764114-------877469-------999305999899
Q gi|254780313|r 144 AYPTIGHRKI---------------DHLRT---MSLCEAATFFALEML-------NIGGDF-------LVKTFQGGTTND 191 (227)
Q Consensus 144 apn~SG~~~~---------------D~~~~---~~L~~~al~~A~~~L-------k~gG~f-------V~K~F~G~~~~~ 191 (227)
.|||-.. +.... ..|....+.=+++-+ ..||.+ |+|.--+.+...
T Consensus 231 ---FtGNv~LKt~EG~a~~i~~~lK~~~~~s~~~klgall~k~~~k~lk~k~d~~~~~Ga~llGl~giViKsHGsad~~a 307 (338)
T COG0416 231 ---FTGNVVLKTAEGTAKFILSLLKEEIKSSLKSKLGALLLKPALKRLKKKLDPSEYGGAVLLGLNGIVIKSHGSADARA 307 (338)
T ss_pred ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCEEEEECCCCCHHH
T ss_conf ---60189999877899999999999988768999999987568999987488664098278316724897168757899
Q ss_pred HHHHHHHHCCE
Q ss_conf 99999862584
Q gi|254780313|r 192 ILCLLKKHFQK 202 (227)
Q Consensus 192 l~~~l~~~F~~ 202 (227)
|...++.-.+.
T Consensus 308 ~~~AI~~a~~~ 318 (338)
T COG0416 308 FASAIRQAYEM 318 (338)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
No 235
>TIGR00452 TIGR00452 methyltransferase, putative; InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order . Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI ), shared by other AdoMet-Mtases , is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments , although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases , , , . The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences . This is a set of proteobacterial proteins, which have homology in their central region to a large number of methyltransferases active on a variety of substrates. .
Probab=74.75 E-value=3.8 Score=21.35 Aligned_cols=32 Identities=31% Similarity=0.476 Sum_probs=22.0
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECC
Q ss_conf 7967888504553068999997068788327864112
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI 103 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl 103 (227)
.|.+|+|+||.-|-.. -+-++. |. -.+||+|-
T Consensus 121 ~~~~i~DVGC~~GY~~---~~M~~~-Ga-k~~VG~DP 152 (316)
T TIGR00452 121 KGRTILDVGCGSGYHL---WRMLGE-GA-KLLVGIDP 152 (316)
T ss_pred CCCEEEEECCCCHHHH---HHHHHC-CC-CEEEECCH
T ss_conf 5777898336870688---977620-78-27874365
No 236
>pfam07757 AdoMet_MTase Predicted AdoMet-dependent methyltransferase. Proteins in this family have been predicted to function as AdoMet-dependent methyltransferases.
Probab=73.09 E-value=3.9 Score=21.28 Aligned_cols=51 Identities=25% Similarity=0.353 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC
Q ss_conf 4799999999986458313796788850455306899999706878832786411213
Q gi|254780313|r 48 RARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD 105 (227)
Q Consensus 48 rsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~ 105 (227)
.+=||| |+|+=++-.--.+-+..+||||+-| ..+......|..| .|+|...
T Consensus 40 laIAay-Li~LW~~~~~~~~~~~FvDlGCGNG----lLV~IL~~EGy~G--~GiD~R~ 90 (112)
T pfam07757 40 LAIAAY-LIMLWRQTRSAESLQSFVDIGCGNG----LLVYILASEGYRG--YGIDLRK 90 (112)
T ss_pred HHHHHH-HHHHHHHHHCCCCCCCEEEECCCCH----HHHHHHHHCCCCC--CCCCCCC
T ss_conf 999999-9999998614257885377147722----8999898678877--3314100
No 237
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=72.29 E-value=8.2 Score=19.27 Aligned_cols=156 Identities=22% Similarity=0.261 Sum_probs=84.2
Q ss_pred HHHHHHCCCHHHHHHHHH---CCHHHHHHHHHHHHHHCCCC--CCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEEC
Q ss_conf 999964089999999881---84479999999998645831--3796788850455306899999706878832786411
Q gi|254780313|r 28 DWLNRHINDPYVQRAQLE---GWRARSAYKLLQINEKHQIL--QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID 102 (227)
Q Consensus 28 ~W~~r~~~D~y~~~Ak~~---gyrsRaafKL~eId~kf~l~--k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVD 102 (227)
+|+.++ |...+.++ -|--|+.=+|+- .++ .+..+|.|-+|+-||..-.+.+.++.......+.|.+
T Consensus 151 E~ll~~----fa~~~~k~~GEfyTP~~v~~liv-----~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE 221 (489)
T COG0286 151 EYLLRK----FAEAEGKEAGEFYTPREVSELIV-----ELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQE 221 (489)
T ss_pred HHHHHH----HHHHHCCCCCCCCCHHHHHHHHH-----HHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 999999----88862755786058799999999-----975776565234733540379999999997515550499895
Q ss_pred CCCC-------CC-CCCC----EEEECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCC-CCCHH-----------H--
Q ss_conf 2133-------34-6981----78301122079999999731388748975320211022-21015-----------7--
Q gi|254780313|r 103 ILDM-------EP-ILGV----KFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGH-RKIDH-----------L-- 156 (227)
Q Consensus 103 l~~~-------~~-i~gv----~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~-~~~D~-----------~-- 156 (227)
+.+. .- +.|+ ....+|-........ ....+++|.|++- |..++. |..+. .
T Consensus 222 ~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~--~~~~~~~D~viaN--PPf~~~~w~~~~~~~~~~~~~~~~g~ 297 (489)
T COG0286 222 INDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDD--KDDKGKFDFVIAN--PPFSGKGWGGDLLESEQDERFFFYGV 297 (489)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC--CCCCCCEEEEECC--CCCCCCCCCCCCCCCCCCCHHCCCCC
T ss_conf 6688999999611662787422343344236873323--4665550168657--99554443443310024320002577
Q ss_pred ----HHHHHHHHHHHHHHHCCCCCCEEEEE-----EECCCCHHHHHHHHHH
Q ss_conf ----88989998898764114877469999-----3059998999999986
Q gi|254780313|r 157 ----RTMSLCEAATFFALEMLNIGGDFLVK-----TFQGGTTNDILCLLKK 198 (227)
Q Consensus 157 ----~~~~L~~~al~~A~~~Lk~gG~fV~K-----~F~G~~~~~l~~~l~~ 198 (227)
....+ +-+......|+|||..-+- +|.|.....+++.+-.
T Consensus 298 ~~~~~~~d~--afi~h~~~~l~~~g~aaivl~~gvlfr~~~e~~IR~~l~~ 346 (489)
T COG0286 298 FPTKNSADL--AFLQHILYKLKPGGRAAIVLPDGVLFRGGAEKDIRKDLLE 346 (489)
T ss_pred CCCCCHHHH--HHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf 888952789--9999999971867705899258866277722579999875
No 238
>TIGR00755 ksgA dimethyladenosine transferase; InterPro: IPR011530 This family of proteins represent the rRNA adenine dimethylases (e.g. KsgA). The bacterial enzyme KsgA catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In yeast, and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB .; GO: 0016433 rRNA (adenine) methyltransferase activity, 0006364 rRNA processing.
Probab=72.23 E-value=7 Score=19.72 Aligned_cols=82 Identities=18% Similarity=0.239 Sum_probs=51.6
Q ss_pred HHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEE-EEEECCCC---------CC--CCCCCEEEECCCCHHHHH
Q ss_conf 9864583137967888504553068999997068788327-86411213---------33--469817830112207999
Q gi|254780313|r 58 INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTR-VVAIDILD---------ME--PILGVKFFKFDFLDLDSW 125 (227)
Q Consensus 58 Id~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~-VigVDl~~---------~~--~i~gv~~~~gDi~~~~~~ 125 (227)
|-+.-++ .+++.||++|.+=|.=|..+.++.. + |+||-|.+ .. ...++..+.||+...+..
T Consensus 21 Iv~~~~~-~~~~~vlEIGPG~G~LT~~Ll~~~~------~~v~aiEiD~~l~~~L~~~~~~~~~~~~~~i~~Dalk~~~~ 93 (277)
T TIGR00755 21 IVEAANV-LENDVVLEIGPGLGALTEPLLKRAK------KLVTAIEIDPRLAEILRKLLSEKLYENLEVIEGDALKVDLN 93 (277)
T ss_pred HHHHHCC-CCCCEEEEECCCCHHHHHHHHHHCC------CEEEEEEECHHHHHHHHHHCCCCCCCCEEEEECCEEEECCC
T ss_conf 9997437-8997799973882078999998259------84899972678999987521543324257871444541232
Q ss_pred HHHHHHCC-CCCCEEEECCCHHHC
Q ss_conf 99997313-887489753202110
Q gi|254780313|r 126 EFIRQAIG-GNPDLVLSDMAYPTI 148 (227)
Q Consensus 126 ~~i~~~l~-~~~DlVlSDmapn~S 148 (227)
...++.. ... .|+|-.=-|+|
T Consensus 94 -~~~~~~~~~~~-~vv~NLPY~Is 115 (277)
T TIGR00755 94 -SLEDFPKEDKL-KVVSNLPYNIS 115 (277)
T ss_pred -HHHHCCCCCCC-EEEEECCCCHH
T ss_conf -04331678985-79850774324
No 239
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=72.12 E-value=8.3 Score=19.24 Aligned_cols=115 Identities=14% Similarity=0.164 Sum_probs=61.1
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCC-----------C------------CCCCEEEECCCCHH
Q ss_conf 379678885045530689999970687883278641121333-----------4------------69817830112207
Q gi|254780313|r 66 QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME-----------P------------ILGVKFFKFDFLDL 122 (227)
Q Consensus 66 k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~-----------~------------i~gv~~~~gDi~~~ 122 (227)
.++.+|+==+|+-+-=..+.++ .+..|+|||+.+.. + -+++.+++|||++.
T Consensus 36 ~~~~rVlVPlCGKs~Dm~wLa~------~G~~VvGvEls~~Av~~ff~e~~l~~~~~~~~~~~~y~~~~i~i~~gDfF~L 109 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAE------QGHEVLGVELSELAVEQFFAENGLTPQVRQSGEFEHYQAGEISLYCGDFFAL 109 (218)
T ss_pred CCCCEEEEECCCCHHHHHHHHH------CCCEEEEEECHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCEEEEECCCCCC
T ss_conf 8898699948986776999984------8972699835299999999973898630136760377538827996642027
Q ss_pred HHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCE--EEEEEEC-----CCCH----HH
Q ss_conf 99999997313887489753202110222101578898999889876411487746--9999305-----9998----99
Q gi|254780313|r 123 DSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD--FLVKTFQ-----GGTT----ND 191 (227)
Q Consensus 123 ~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~--fV~K~F~-----G~~~----~~ 191 (227)
+.. .-+.+|.|.==+|. + .++.. +.- .=......+|++||. +++=.++ |+-+ .+
T Consensus 110 ~~~------~~g~~DaIyDRaal-~----ALpp~--~R~--~Y~~~l~~ll~~g~~~LLitl~Y~q~~~~GPPFsv~~~E 174 (218)
T PRK13255 110 TAA------DLADVDAVYDRAAL-I----ALPEE--MRE--RYVQQLAALLPAGCRGLLVTLDYPQEELAGPPFSVSDEE 174 (218)
T ss_pred CHH------HCCCCCEEEECCCE-E----CCCHH--HHH--HHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCHHH
T ss_conf 863------54774889975380-1----28989--999--999999986499874899998627655689699899999
Q ss_pred HHHHHHHHCC
Q ss_conf 9999986258
Q gi|254780313|r 192 ILCLLKKHFQ 201 (227)
Q Consensus 192 l~~~l~~~F~ 201 (227)
+.......|+
T Consensus 175 v~~ly~~~~~ 184 (218)
T PRK13255 175 VEALFAGDFE 184 (218)
T ss_pred HHHHHCCCCE
T ss_conf 9998437867
No 240
>TIGR01179 galE UDP-glucose 4-epimerase; InterPro: IPR005886 Synonym: UDP-galactose 4-epimerase UDP-glucose 4-epimerase (5.1.3.2 from EC) interconverts UDP-glucose and UDP-galactose which are precursors of glucose- and galactose-containing exopolysaccharides (EPS). A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded and described by a separate model. ; GO: 0003978 UDP-glucose 4-epimerase activity, 0006012 galactose metabolic process.
Probab=72.11 E-value=8.3 Score=19.24 Aligned_cols=58 Identities=19% Similarity=0.198 Sum_probs=37.9
Q ss_pred CCEEEECCCCHHHHHHHHHH--HCCCCCCEEEECCCHHHCCCCCCHHH---------HHHHHHHHHHHHH
Q ss_conf 81783011220799999997--31388748975320211022210157---------8898999889876
Q gi|254780313|r 111 GVKFFKFDFLDLDSWEFIRQ--AIGGNPDLVLSDMAYPTIGHRKIDHL---------RTMSLCEAATFFA 169 (227)
Q Consensus 111 gv~~~~gDi~~~~~~~~i~~--~l~~~~DlVlSDmapn~SG~~~~D~~---------~~~~L~~~al~~A 169 (227)
.+.|++||+.|....+.+.+ .+..++|.||+=+|--.=|. +++++ .++.|+++...+.
T Consensus 50 ~~~fv~gDL~D~~~l~~~f~kqql~~~idAViHFAg~~~VgE-Sv~~Pl~YY~NNv~nTl~L~~~m~~~G 118 (341)
T TIGR01179 50 EVTFVEGDLRDRELLRRVFEKQQLEHKIDAVIHFAGLIAVGE-SVQKPLKYYRNNVVNTLNLLEAMQETG 118 (341)
T ss_pred CCEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 320587175157999999877431167546752011212525-575245440004689999999999818
No 241
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; InterPro: IPR001095 This entry contains the alpha subunit the acetyl coenzyme A carboxylase complex (). It catalyzes the first step in the synthesis of long-chain fatty acids which involves the carboxylation of acetyl-CoA to malonyl-CoA. The acetyl-CoA carboxylase complex () is a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase and two non-identical carboxyl transferase subunits (alpha and beta) in a 2:2 association . The reaction involves two steps: Biotin carrier protein + ATP + HCO_3^- -> Carboxybiotin carrier protein + ADP + P_i Carboxybiotin carrier protein + Acetyl-CoA -> Malonyl-CoA + Biotin carrier protein ; GO: 0003989 acetyl-CoA carboxylase activity, 0006633 fatty acid biosynthetic process, 0009317 acetyl-CoA carboxylase complex.
Probab=71.89 E-value=1.4 Score=24.09 Aligned_cols=59 Identities=24% Similarity=0.504 Sum_probs=44.3
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEE-EECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCC
Q ss_conf 99998818447999999999864583137967888-504553068999997068788327864112133346
Q gi|254780313|r 39 VQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVD-LGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPI 109 (227)
Q Consensus 39 ~~~Ak~~gyrsRaafKL~eId~kf~l~k~g~~VlD-LGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~i 109 (227)
+=++.=+|| |=|.+|.|.=+||++ |=-+.+| =||.|| +.++.-| ++.-||.-|.+|..+
T Consensus 137 FGMP~P~GY--RKALrLm~~AerF~~--PIi~fiDT~GAYPG----igAEerG----QsEAIA~NL~Ema~L 196 (329)
T TIGR00513 137 FGMPAPEGY--RKALRLMKMAERFNL--PIITFIDTPGAYPG----IGAEERG----QSEAIAKNLREMARL 196 (329)
T ss_pred CCCCCCCCH--HHHHHHHHHHHHCCC--CEEEEECCCCCCCC----CHHHHHC----CHHHHHHHHHHHHCC
T ss_conf 798879604--799999987776179--85886538888756----2044505----278999998997109
No 242
>TIGR03675 arCOG00543 arCOG01782 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=71.84 E-value=8.4 Score=19.20 Aligned_cols=86 Identities=16% Similarity=0.194 Sum_probs=52.6
Q ss_pred EEEECCCCHHHHHHHHHHH--CCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHH
Q ss_conf 7830112207999999973--13887489753202110222101578898999889876411487746999930599989
Q gi|254780313|r 113 KFFKFDFLDLDSWEFIRQA--IGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTN 190 (227)
Q Consensus 113 ~~~~gDi~~~~~~~~i~~~--l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~ 190 (227)
..+.||+.-..+.- +... ...++|+++.. .|-|.++.-|.--.+.-..-+.....++..||+.++=+|.=...+
T Consensus 341 ilfTGD~~~~~~rl-l~~A~~~~~~~D~LI~E---STYG~r~~~h~~r~e~e~~l~~~I~et~~rGGkVLIPaFAvGRaQ 416 (630)
T TIGR03675 341 IVYTGDFKYEKTRL-LDPAVNKFPRVETLIME---STYGGRDDYQPSREEAEKELIKVVNETIKRGGKVLIPVFAVGRAQ 416 (630)
T ss_pred EEEECCCCCCCCCC-CCCCCCCCCCCCEEEEE---CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHH
T ss_conf 99959989997767-68756787777789997---435776556899899999999999999963982999863365389
Q ss_pred HHHHHHHHHCCE
Q ss_conf 999999862584
Q gi|254780313|r 191 DILCLLKKHFQK 202 (227)
Q Consensus 191 ~l~~~l~~~F~~ 202 (227)
+++..|..+.++
T Consensus 417 Ell~iL~e~~~~ 428 (630)
T TIGR03675 417 EVMLVLEEAMRK 428 (630)
T ss_pred HHHHHHHHHHHC
T ss_conf 999999999973
No 243
>PRK03612 spermidine synthase; Provisional
Probab=71.54 E-value=8.5 Score=19.16 Aligned_cols=124 Identities=16% Similarity=0.142 Sum_probs=70.3
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCC-------C-----------CCCCEEEECCCCHHHHHHHH
Q ss_conf 79678885045530689999970687883278641121333-------4-----------69817830112207999999
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME-------P-----------ILGVKFFKFDFLDLDSWEFI 128 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~-------~-----------i~gv~~~~gDi~~~~~~~~i 128 (227)
+-.+||=||.+-|+ .+.+.....+ --+|.-|||.|.- | -|.++.+.+ |....+
T Consensus 293 ~p~~VLiiGGGdG~---a~revLk~~~-ve~v~lVelD~~vv~lar~~~~l~~~n~~a~~DpRv~v~~~-----Da~~~l 363 (516)
T PRK03612 293 RARRVLILGGGDGL---ALREVLKYPD-VEQVTLVDLDPAVTELARTSPALRALNGGALDDPRVTVVND-----DAFNWL 363 (516)
T ss_pred CCCEEEEECCCCCH---HHHHHHCCCC-CCEEEEEECCHHHHHHHHHCCCHHHHHCCCCCCCCEEEEEH-----HHHHHH
T ss_conf 97738998377608---7999864899-66378995188999999857214444123234996489853-----789999
Q ss_pred HHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE----ECCCCHHHHHHHHHHHCCEEE
Q ss_conf 9731388748975320211022210157889899988987641148774699993----059998999999986258469
Q gi|254780313|r 129 RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT----FQGGTTNDILCLLKKHFQKVI 204 (227)
Q Consensus 129 ~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~----F~G~~~~~l~~~l~~~F~~V~ 204 (227)
++ ...++|+|+.|. |+-++.... ..-+.| =-..+.+.|+++|.+|+-. |.-..+-.+.+-++..|-.|.
T Consensus 364 ~~-~~~~yDvIi~D~-pdP~~~~~~-~LYs~e----FY~~~~~~L~~~G~~v~qs~Sp~~~~~~f~~i~~T~~~~~~~~~ 436 (516)
T PRK03612 364 RK-LPETFDAIIVDL-PDPSNPALG-KLYSVE----FYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGFATT 436 (516)
T ss_pred HH-CCCCCCEEEEEC-CCCCCCCCC-CCCCHH----HHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 86-888788899818-997995224-675399----99999984499958999368975522034689999998388041
Q ss_pred EE
Q ss_conf 97
Q gi|254780313|r 205 HV 206 (227)
Q Consensus 205 ~~ 206 (227)
.+
T Consensus 437 ~y 438 (516)
T PRK03612 437 PY 438 (516)
T ss_pred CC
T ss_conf 32
No 244
>PRK06398 aldose dehydrogenase; Validated
Probab=71.47 E-value=8.6 Score=19.15 Aligned_cols=78 Identities=18% Similarity=0.212 Sum_probs=51.0
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEECCCCHHHHHHHHHHHCC---CCCCEEEECC
Q ss_conf 7967888504553068999997068788327864112133346981783011220799999997313---8874897532
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG---GNPDLVLSDM 143 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~i~gv~~~~gDi~~~~~~~~i~~~l~---~~~DlVlSDm 143 (227)
.|.++|=-|++-|==...| +..... +.+|+.+|...-+....+.++++|+++++..+.+.+... ++.|+++.-.
T Consensus 5 ~gKvalVTGgs~GIG~aia-~~la~~--Ga~V~~~~~~~~~~~~~~~~i~~Dvt~~~~v~~~v~~~~~~~G~iDiLVNNA 81 (256)
T PRK06398 5 RDKVVIVTGGSSGIGLAIV-SRFVDE--GSKVVSISRSEPEDINKSDHIKCDVTNEDEVKNAINEISKKYGRIDVLVNNA 81 (256)
T ss_pred CCCEEEEECCCCHHHHHHH-HHHHHC--CCEEEEEECCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCEEEECC
T ss_conf 9898999687878999999-999986--9999999487512517223898547999999999999999839997999899
Q ss_pred CHHH
Q ss_conf 0211
Q gi|254780313|r 144 AYPT 147 (227)
Q Consensus 144 apn~ 147 (227)
+-..
T Consensus 82 G~~~ 85 (256)
T PRK06398 82 GIEK 85 (256)
T ss_pred CCCC
T ss_conf 9999
No 245
>TIGR01444 fkbM_fam methyltransferase, FkbM family; InterPro: IPR006342 Members of this group are characterised by two well-conserved short regions separated by a variable region in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterised as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548 ..
Probab=70.76 E-value=4.7 Score=20.79 Aligned_cols=34 Identities=29% Similarity=0.461 Sum_probs=27.2
Q ss_pred EEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC
Q ss_conf 788850455306899999706878832786411213
Q gi|254780313|r 70 RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD 105 (227)
Q Consensus 70 ~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~ 105 (227)
+|+|+||.=|.|+-++++..+.. .++|+++.-+|
T Consensus 1 ~~~D~GAn~G~~~~~~~~~~~~~--~~~v~afEP~p 34 (142)
T TIGR01444 1 VVIDVGANIGDFSLYFARKGAEG--GGRVIAFEPLP 34 (142)
T ss_pred CEEEECCCHHHHHHHHHHHCCCC--CCEEEEECCCH
T ss_conf 97870177047999999741788--73189986895
No 246
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=69.93 E-value=9.3 Score=18.94 Aligned_cols=94 Identities=24% Similarity=0.271 Sum_probs=49.7
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC-----CCCCCCE-EEECCCCHHHHHHHHHHHCCC-CCC
Q ss_conf 137967888504553068999997068788327864112133-----3469817-830112207999999973138-874
Q gi|254780313|r 65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM-----EPILGVK-FFKFDFLDLDSWEFIRQAIGG-NPD 137 (227)
Q Consensus 65 ~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~-----~~i~gv~-~~~gDi~~~~~~~~i~~~l~~-~~D 137 (227)
+++|++||=.| +.||--+.+.+.....| .+|++++-.+- +. -|+. ...-|-.+.+..+.+.+..++ .+|
T Consensus 102 i~~g~~VlI~g-g~G~vG~~aiqlak~~G--a~Vi~t~~s~~k~~~~~~-lG~~~~~v~~~~~~~~~~~v~~~t~g~gvD 177 (288)
T smart00829 102 LRPGESVLIHA-AAGGVGQAAIQLAQHLG--AEVFATAGSPEKRDFLRE-LGIPDDHIFSSRDLSFADEILRATGGRGVD 177 (288)
T ss_pred CCCCCEEEEEC-CCCHHHHHHHHHHHHCC--CCEEEEECCHHHHHHHHH-CCCCCCEEEECCCCCHHHHHHHHHCCCCCE
T ss_conf 89999999978-98677799999999739--830034088899999997-699960762179950999999870898827
Q ss_pred EEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 8975320211022210157889899988987641148774699
Q gi|254780313|r 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL 180 (227)
Q Consensus 138 lVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV 180 (227)
+|+ |. .|.. .+.-+.++|+++|.+|
T Consensus 178 vv~-d~----vgg~-------------~~~~~~~~l~~~G~~v 202 (288)
T smart00829 178 VVL-NS----LAGE-------------FLDASLRCLAPGGRFV 202 (288)
T ss_pred EEE-EC----CCHH-------------HHHHHHHHHCCCCEEE
T ss_conf 999-89----8689-------------9999999753698899
No 247
>PRK10693 response regulator of RpoS; Provisional
Probab=68.34 E-value=9 Score=19.03 Aligned_cols=20 Identities=10% Similarity=0.032 Sum_probs=9.2
Q ss_pred CCCCEEEEEECCCCHHHHHH
Q ss_conf 37967888504553068999
Q gi|254780313|r 66 QSNRRIVDLGSSPGSWSQVA 85 (227)
Q Consensus 66 k~g~~VlDLGaaPGgWsQva 85 (227)
+|.-.++|+.----.-.+++
T Consensus 51 ~pDLIi~Dl~MP~mdGlell 70 (337)
T PRK10693 51 TPDLMICDIAMPRMNGLKFV 70 (337)
T ss_pred CCCEEEEECCCCCCCHHHHH
T ss_conf 99999996899999989999
No 248
>pfam07942 N2227 N2227-like protein. This family features sequences that are similar to a region of hypothetical yeast gene product N2227. This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions.
Probab=67.96 E-value=8.9 Score=19.06 Aligned_cols=78 Identities=21% Similarity=0.212 Sum_probs=43.3
Q ss_pred CCCEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHH-HHHHHHHHHHHHHHCCCCCCEEEE----E-E
Q ss_conf 981783011220799999997313887489753202110222101578-898999889876411487746999----9-3
Q gi|254780313|r 110 LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLR-TMSLCEAATFFALEMLNIGGDFLV----K-T 183 (227)
Q Consensus 110 ~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~-~~~L~~~al~~A~~~Lk~gG~fV~----K-~ 183 (227)
.+.....|||++.-. .-.+.+|+|++= ..+|.+. .++. ++...++|+|||..|- + -
T Consensus 145 ~~~sm~aGDF~e~y~------~~~~~~d~VvT~--------FFIDTA~Ni~~Y----i~tI~~lLkpgG~WIN~GPLlyh 206 (268)
T pfam07942 145 GNFSMCAGDFLEVYG------EDANSYDVVVTC--------FFIDTAHNVLEY----IDTIEKILKPGGHWINLGPLLYH 206 (268)
T ss_pred CCEEEEEEEEEEECC------CCCCCCCEEEEE--------EEEECHHHHHHH----HHHHHHHHCCCCEEEECCCCCCC
T ss_conf 841487003589838------887822689999--------876646889999----99999983669889964670124
Q ss_pred ECC--------CCHHHHHHHHHHH-CCEEEE
Q ss_conf 059--------9989999999862-584699
Q gi|254780313|r 184 FQG--------GTTNDILCLLKKH-FQKVIH 205 (227)
Q Consensus 184 F~G--------~~~~~l~~~l~~~-F~~V~~ 205 (227)
|.. -..++++..++.. |+-++.
T Consensus 207 ~~~~~~~~siELs~eEi~~l~~~~GF~~~~~ 237 (268)
T pfam07942 207 FEPLPDEMSIELSLEDIKRLATKRGFKDEKE 237 (268)
T ss_pred CCCCCCCCCEECCHHHHHHHHHHCCCEEEEE
T ss_conf 5777887600068999999998569779988
No 249
>PRK07806 short chain dehydrogenase; Provisional
Probab=67.38 E-value=10 Score=18.61 Aligned_cols=112 Identities=17% Similarity=0.074 Sum_probs=60.2
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---C----CCC----CCCEEEECCCCHHHHHHHHHHHCC--
Q ss_conf 796788850455306899999706878832786411213---3----346----981783011220799999997313--
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---M----EPI----LGVKFFKFDFLDLDSWEFIRQAIG-- 133 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---~----~~i----~gv~~~~gDi~~~~~~~~i~~~l~-- 133 (227)
.|.++|=-|++-|== +-+++.....|. .|+-.+... . +.+ ..+..+++|+++++..+.+.+...
T Consensus 5 ~gKvalVTGas~GIG-~aiA~~la~~Ga--~Vvi~~~~~~~~a~~~~~~i~~~g~~a~~~~~Dvtd~~~v~~l~~~~~~~ 81 (248)
T PRK07806 5 PGKIALVTGSSRGIG-AEVAKYLAGAGA--HVVVNYRNKAARAEKVVAEIRAAGGRASAVGADLTDEASVAALMDAIRAE 81 (248)
T ss_pred CCCEEEEECCCCHHH-HHHHHHHHHCCC--EEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 998899937885999-999999998799--89998389568999999999961983999978999999999999999998
Q ss_pred -CCCCEEEECCCHHHCCCCCCHHHHHHHH--HHHHHHHHHHCCCCCCEEEE
Q ss_conf -8874897532021102221015788989--99889876411487746999
Q gi|254780313|r 134 -GNPDLVLSDMAYPTIGHRKIDHLRTMSL--CEAATFFALEMLNIGGDFLV 181 (227)
Q Consensus 134 -~~~DlVlSDmapn~SG~~~~D~~~~~~L--~~~al~~A~~~Lk~gG~fV~ 181 (227)
++.|+++.-.+.......+-|+....++ ....+..++..++.||..|.
T Consensus 82 ~G~iDiLVnNAg~~~~~~~~~~~~~~~n~~~~~~~~~~~~p~m~~gg~Ii~ 132 (248)
T PRK07806 82 FGGLDALVLNASGGMESGMDPDYAMRLNRDAQRRLLTLALPLMPAGSRVVF 132 (248)
T ss_pred CCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 499989998999987789972268999989999999999977504978999
No 250
>PRK00107 gidB glucose-inhibited division protein B; Reviewed
Probab=67.28 E-value=11 Score=18.60 Aligned_cols=102 Identities=21% Similarity=0.289 Sum_probs=58.3
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCC--------CC---CCCCCCEEEECCCCHHHHHHHHHHHCCCC
Q ss_conf 79678885045530689999970687883278641121--------33---34698178301122079999999731388
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL--------DM---EPILGVKFFKFDFLDLDSWEFIRQAIGGN 135 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~--------~~---~~i~gv~~~~gDi~~~~~~~~i~~~l~~~ 135 (227)
+..+|+|+|++.|= --.......+ +..+.-||-. .+ -.++||..+.+-+.+.. ...+
T Consensus 69 ~~~~vlDiGSGaGf-PGiplAI~~p---~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~--------~~~~ 136 (216)
T PRK00107 69 KPIRVLDVGSGAGF-PGIPLAIARP---DLQVTLVDSLGKKIAFLRQVAAELGLKNVTVVHGRAEEFG--------QEEK 136 (216)
T ss_pred CCCEEEECCCCCCC-HHHHHHHHCC---CCCEEEECHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCC--------CCCC
T ss_conf 58779970799994-2678999778---7729997387699999999999769998799863544046--------5678
Q ss_pred CCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHH
Q ss_conf 74897532021102221015788989998898764114877469999305999899999998
Q gi|254780313|r 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197 (227)
Q Consensus 136 ~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~ 197 (227)
||+|+|=+-.+. ...++++..+|++||.|+ ++.|....+=+..++
T Consensus 137 fD~itsRAva~l---------------~~l~~~~~~~l~~~g~~i--~~KG~~~~~Ei~~a~ 181 (216)
T PRK00107 137 FDVVTSRAVASL---------------SDLVELCLPLLKPGGRFL--ALKGQDPEEEIAELP 181 (216)
T ss_pred CCEEEEEHHHCH---------------HHHHHHHHHHCCCCCEEE--EECCCCHHHHHHHHH
T ss_conf 668986054069---------------999999997548897999--987999599999989
No 251
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=66.71 E-value=11 Score=18.53 Aligned_cols=78 Identities=23% Similarity=0.297 Sum_probs=48.3
Q ss_pred CCCCEEEECCCCHHHHHHHHHHHCC---CCCCEEEECCCH----HHCCCCCCHHHH----------HHHHHHHHHHHHHH
Q ss_conf 6981783011220799999997313---887489753202----110222101578----------89899988987641
Q gi|254780313|r 109 ILGVKFFKFDFLDLDSWEFIRQAIG---GNPDLVLSDMAY----PTIGHRKIDHLR----------TMSLCEAATFFALE 171 (227)
Q Consensus 109 i~gv~~~~gDi~~~~~~~~i~~~l~---~~~DlVlSDmap----n~SG~~~~D~~~----------~~~L~~~al~~A~~ 171 (227)
+.....+.+|+++.+..+.+...++ +++|.+++-+|. ..+|. .+|..+ .+.+ .....-|..
T Consensus 55 ~~s~~v~~cDV~~d~~i~~~f~~i~~~~g~lD~lVHsIaFa~k~el~G~-~~dtsre~f~~a~~IS~YS~-~~lak~a~p 132 (259)
T COG0623 55 LGSDLVLPCDVTNDESIDALFATIKKKWGKLDGLVHSIAFAPKEELKGD-YLDTSREGFLIAMDISAYSF-TALAKAARP 132 (259)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHCCC-EECCCHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_conf 1677699667787689999999998760766479987314886781786-00067888877762547129-999999998
Q ss_pred CCCCCCEEEEEEECCCC
Q ss_conf 14877469999305999
Q gi|254780313|r 172 MLNIGGDFLVKTFQGGT 188 (227)
Q Consensus 172 ~Lk~gG~fV~K~F~G~~ 188 (227)
++.+||+.|.=.|-|++
T Consensus 133 lM~~ggSiltLtYlgs~ 149 (259)
T COG0623 133 LMNNGGSILTLTYLGSE 149 (259)
T ss_pred HCCCCCCEEEEEECCCE
T ss_conf 51699717999721634
No 252
>PRK13699 putative methylase; Provisional
Probab=65.93 E-value=11 Score=18.43 Aligned_cols=41 Identities=7% Similarity=0.183 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHH-HHHHHHCC
Q ss_conf 8898999889876411487746999930599989999-99986258
Q gi|254780313|r 157 RTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDIL-CLLKKHFQ 201 (227)
Q Consensus 157 ~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~-~~l~~~F~ 201 (227)
.=.+|++..+ .....-|.+|+=-|-|+++..+. ..+.+.|-
T Consensus 148 KPv~L~e~lI----~~~S~~gdlVLDPF~GSGTT~vAA~~lgR~fI 189 (227)
T PRK13699 148 KPVTSLQPLI----ESFTHPNAIVLDPFAGSGSTCVAALQSGRRYI 189 (227)
T ss_pred CCHHHHHHHH----HHCCCCCCEEEECCCCCCHHHHHHHHCCCCEE
T ss_conf 9299999999----95599999999779987589999998199489
No 253
>pfam05219 DREV DREV methyltransferase. This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown. However, these proteins appear to be related to other methyltransferases (Bateman A pers obs).
Probab=65.58 E-value=11 Score=18.39 Aligned_cols=29 Identities=24% Similarity=0.330 Sum_probs=20.7
Q ss_pred CEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECC
Q ss_conf 67888504553068999997068788327864112
Q gi|254780313|r 69 RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI 103 (227)
Q Consensus 69 ~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl 103 (227)
.++|||||+-|+-|...+.... .|.+-..
T Consensus 96 ~~LLDlGAGdG~VT~~la~~F~------~V~aTE~ 124 (265)
T pfam05219 96 VTLLDLGAGDGEITLRMAPTFE------EVYATEL 124 (265)
T ss_pred CEEEEECCCCCHHHHHHHHHHC------EEEEEEC
T ss_conf 6478835899789999997523------5888727
No 254
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=65.44 E-value=5.9 Score=20.18 Aligned_cols=117 Identities=23% Similarity=0.234 Sum_probs=60.3
Q ss_pred CCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCC------CCCCEEEECCCCHHHHHHHHHHHCCC-CCCEEE
Q ss_conf 96788850455306899999706878832786411213334------69817830112207999999973138-874897
Q gi|254780313|r 68 NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP------ILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVL 140 (227)
Q Consensus 68 g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~------i~gv~~~~gDi~~~~~~~~i~~~l~~-~~DlVl 140 (227)
..+++||.|+=||.+. ..+..| . -.+.++|+.+..- .+...++.+||...+. +.+.. .+|+++
T Consensus 3 ~~~~idLFsG~GG~~l-Gf~~ag---f-~~~~a~Eid~~a~~ty~~n~~~~~~~~~di~~~~~-----~~~~~~~~Dvli 72 (328)
T COG0270 3 KMKVIDLFAGIGGLSL-GFEEAG---F-EIVFANEIDPPAVATYKANFPHGDIILGDIKELDG-----EALRKSDVDVLI 72 (328)
T ss_pred CCEEEEECCCCCHHHH-HHHHCC---C-EEEEEEECCHHHHHHHHHHCCCCCCHHHHHHHHCH-----HHCCCCCCCEEE
T ss_conf 8549986587565889-998649---8-48998746988999999858887420303766052-----223556763798
Q ss_pred ECCCHHHC-----CCC-CCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEC------CCCHHHHHHHHHHH
Q ss_conf 53202110-----222-1015788989998898764114877469999305------99989999999862
Q gi|254780313|r 141 SDMAYPTI-----GHR-KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ------GGTTNDILCLLKKH 199 (227)
Q Consensus 141 SDmapn~S-----G~~-~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~------G~~~~~l~~~l~~~ 199 (227)
. +|.|. |.+ ..|..|. .|......+ ...++| -.||+--=. |..+..+.+.|+..
T Consensus 73 g--GpPCQ~FS~aG~r~~~~D~R~-~L~~~~~r~-I~~~~P-~~fv~ENV~gl~~~~~~~~~~i~~~L~~~ 138 (328)
T COG0270 73 G--GPPCQDFSIAGKRRGYDDPRG-SLFLEFIRL-IEQLRP-KFFVLENVKGLLSSKGQTFDEIKKELEEL 138 (328)
T ss_pred E--CCCCCCHHHHCCCCCCCCCHH-HHHHHHHHH-HHHHCC-CEEEEECCHHHHHCCHHHHHHHHHHHHHC
T ss_conf 5--899721334077667767334-769999999-996389-87999664666654416999999999875
No 255
>TIGR01230 agmatinase agmatinase, putative; InterPro: IPR005925 Members of this family include known and predicted examples of agmatinase (agmatine ureohydrolase, 3.5.3.11 from EC) and members of archaea, for which no definitive agmatinase sequence has yet been made available. However, archaeal sequences are phylogenetically close to the experimentally verified B. subtilis sequence. One species of Halobacterium has been demonstrated in vitro to produce agmatine from arginine, but no putrescine from ornithine, suggesting that arginine decarboxylase and agmatinase, rather than arginase and ornithine decarboxylase, lead from arginine to polyamine biosynthesis.; GO: 0008783 agmatinase activity, 0006596 polyamine biosynthetic process.
Probab=65.40 E-value=6 Score=20.11 Aligned_cols=56 Identities=14% Similarity=0.293 Sum_probs=23.2
Q ss_pred EEEECCCC---------HHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf 88504553---------0689999970687883278641121333469817830112207999999973
Q gi|254780313|r 72 VDLGSSPG---------SWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQA 131 (227)
Q Consensus 72 lDLGaaPG---------gWsQva~~~~~~~~~~~~VigVDl~~~~~i~gv~~~~gDi~~~~~~~~i~~~ 131 (227)
||=+.||| +|.+.+....--....-+|+|.|+.++.|+-. +..||...+-+.+++.
T Consensus 229 lDPAfAPGtGTPepgGl~~~e~~~S~~~~~~~~~~v~G~D~VEVaP~yD----~s~~T~~~AAKia~e~ 293 (296)
T TIGR01230 229 LDPAFAPGTGTPEPGGLTSKELLNSLFVRALKEDNVVGFDVVEVAPVYD----QSEVTALTAAKIALEL 293 (296)
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEECCEEC----CHHHHHHHHHHHHHHH
T ss_conf 6878487888754898787999999998753024254557888523144----3366799999999999
No 256
>KOG0022 consensus
Probab=64.89 E-value=12 Score=18.31 Aligned_cols=77 Identities=19% Similarity=0.302 Sum_probs=37.3
Q ss_pred CCCCEEEEEECCCCHHHHH-HHHHHCCCCCCEEEEEECCCCCCCCC----CC-EEEEC-CCCHHHHHHHHHHHCCCCCCE
Q ss_conf 3796788850455306899-99970687883278641121333469----81-78301-122079999999731388748
Q gi|254780313|r 66 QSNRRIVDLGSSPGSWSQV-AARITGSNANNTRVVAIDILDMEPIL----GV-KFFKF-DFLDLDSWEFIRQAIGGNPDL 138 (227)
Q Consensus 66 k~g~~VlDLGaaPGgWsQv-a~~~~~~~~~~~~VigVDl~~~~~i~----gv-~~~~g-Di~~~~~~~~i~~~l~~~~Dl 138 (227)
+||.+|.=.|.+-=|-+-. -++..| ..+|||||+++-+--. |+ .|+.- |..+ ..++.|.+.-++.+|
T Consensus 191 ~~GstvAVfGLG~VGLav~~Gaka~G----AsrIIgvDiN~~Kf~~ak~fGaTe~iNp~d~~~-~i~evi~EmTdgGvD- 264 (375)
T KOG0022 191 EPGSTVAVFGLGGVGLAVAMGAKAAG----ASRIIGVDINPDKFEKAKEFGATEFINPKDLKK-PIQEVIIEMTDGGVD- 264 (375)
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHCC----CCCEEEEECCHHHHHHHHHCCCCEECCHHHCCC-CHHHHHHHHHCCCCE-
T ss_conf 77987999905457889987677618----651799855878989987619502237033053-399999998668720-
Q ss_pred EEECCCHHHCCCCC
Q ss_conf 97532021102221
Q gi|254780313|r 139 VLSDMAYPTIGHRK 152 (227)
Q Consensus 139 VlSDmapn~SG~~~ 152 (227)
-+..++|+-+
T Consensus 265 ----ysfEc~G~~~ 274 (375)
T KOG0022 265 ----YSFECIGNVS 274 (375)
T ss_pred ----EEEEECCCHH
T ss_conf ----8999558989
No 257
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=64.13 E-value=6.8 Score=19.78 Aligned_cols=65 Identities=18% Similarity=0.198 Sum_probs=33.3
Q ss_pred CCCCEEEEC-CCHHHCCCCCCHHHHHHHH--------HHHHHHHHHHCCCCCC-EEEEEEECCCCHHHHHHHHHH
Q ss_conf 887489753-2021102221015788989--------9988987641148774-699993059998999999986
Q gi|254780313|r 134 GNPDLVLSD-MAYPTIGHRKIDHLRTMSL--------CEAATFFALEMLNIGG-DFLVKTFQGGTTNDILCLLKK 198 (227)
Q Consensus 134 ~~~DlVlSD-mapn~SG~~~~D~~~~~~L--------~~~al~~A~~~Lk~gG-~fV~K~F~G~~~~~l~~~l~~ 198 (227)
.++|+|+.| +.|+.+|.....+.+.... +..-.+.+..-++-|. .+++|=|.-+.+.+-+...+.
T Consensus 49 ~~pDLvLLDi~LPd~~Glell~~lr~~~~~~~VI~iTA~~d~~~~~~Al~~Ga~DYLvKPf~~erl~~~L~~y~~ 123 (225)
T PRK10046 49 FKPGLILLDNYLPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 (225)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHH
T ss_conf 599999982898999799999999964879988999689999999999974998310289999999999999999
No 258
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=62.89 E-value=5.8 Score=20.19 Aligned_cols=27 Identities=22% Similarity=0.246 Sum_probs=19.3
Q ss_pred CCCCCCEEEEC-CCHHHCCCCCCHHHHH
Q ss_conf 13887489753-2021102221015788
Q gi|254780313|r 132 IGGNPDLVLSD-MAYPTIGHRKIDHLRT 158 (227)
Q Consensus 132 l~~~~DlVlSD-mapn~SG~~~~D~~~~ 158 (227)
-...+|+|++| ..|+.+|.....+.+.
T Consensus 47 ~~~~~Dlil~D~~MP~~dG~el~~~ir~ 74 (129)
T PRK10610 47 QAGGFGFVISDWNMPNMDGLELLKTIRA 74 (129)
T ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHH
T ss_conf 8589999998189999989999999985
No 259
>PRK07578 short chain dehydrogenase; Provisional
Probab=60.37 E-value=14 Score=17.80 Aligned_cols=101 Identities=17% Similarity=0.180 Sum_probs=56.2
Q ss_pred CEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHC
Q ss_conf 67888504553068999997068788327864112133346981783011220799999997313887489753202110
Q gi|254780313|r 69 RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTI 148 (227)
Q Consensus 69 ~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDmapn~S 148 (227)
++||=.|++-| -=.-+++..... ..|+.+.-.. .-++.|+++++..+.+.+.+ +++|++++-.+....
T Consensus 1 MrVlVTGas~G-IG~aia~~la~~---~~vv~~~r~~-------~~~~~Dvtd~~~v~~~~~~~-G~iD~lVnnAG~~~~ 68 (199)
T PRK07578 1 MKILVIGASGT-IGRAVVAELSAR---HEVITAGRSS-------GDVQVDITDPASIRALFEKV-GKVDAVVSAAGKVHF 68 (199)
T ss_pred CEEEEECCCCH-HHHHHHHHHHCC---CCEEEEECCC-------CCEEEECCCHHHHHHHHHHH-CCCCEEEECCCCCCC
T ss_conf 97999998748-999999999679---9989983686-------77568588999999999962-999899988722679
Q ss_pred C-CCCCHH---HHHHHHHH----HHHHHHHHCCCCCCEEEE
Q ss_conf 2-221015---78898999----889876411487746999
Q gi|254780313|r 149 G-HRKIDH---LRTMSLCE----AATFFALEMLNIGGDFLV 181 (227)
Q Consensus 149 G-~~~~D~---~~~~~L~~----~al~~A~~~Lk~gG~fV~ 181 (227)
| ..+.+. .+.++++. ..+..+...|+.||+.|.
T Consensus 69 ~~~~~~~~e~~~~~~~~nl~g~~~l~~~~~~~l~~gGsIv~ 109 (199)
T PRK07578 69 APLTEMTDEDFQLGLQSKLMGQINLVLIGQEYLNDGGSFTL 109 (199)
T ss_pred CCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf 89487999897778720013899999999998760898568
No 260
>TIGR00959 ffh signal recognition particle protein; InterPro: IPR004780 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , . SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. This entry represents various SRP subunits.; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle.
Probab=60.20 E-value=14 Score=17.78 Aligned_cols=117 Identities=21% Similarity=0.229 Sum_probs=66.9
Q ss_pred EEEEEECCCCHHHHHH----HH-HHCCCCCCEEEEEECCCCCCCCC---------CCEEEE-CCC-CH---H-HH-HHHH
Q ss_conf 7888504553068999----99-70687883278641121333469---------817830-112-20---7-99-9999
Q gi|254780313|r 70 RIVDLGSSPGSWSQVA----AR-ITGSNANNTRVVAIDILDMEPIL---------GVKFFK-FDF-LD---L-DS-WEFI 128 (227)
Q Consensus 70 ~VlDLGaaPGgWsQva----~~-~~~~~~~~~~VigVDl~~~~~i~---------gv~~~~-gDi-~~---~-~~-~~~i 128 (227)
.|+=+|=-=+|=|-.+ .. +....+.+..++|.|+..-..++ ||.++. -.- .+ | ++ ...+
T Consensus 104 vilmvGLQGsGKTTt~gKLA~~ll~kk~~~kvLLva~D~yRPAA~~QL~~Lg~Q~gVpvf~h~~~~~~p~~Pv~ia~~Al 183 (439)
T TIGR00959 104 VILMVGLQGSGKTTTAGKLALYLLKKKEGKKVLLVACDLYRPAAIEQLKVLGEQVGVPVFAHLGKGQSPDDPVEIARQAL 183 (439)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 89973137885788999999999998638970340321034789999999767528871100478889887789999999
Q ss_pred HHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEE-EEEEECCCCHHHHHHH
Q ss_conf 973138874897532021102221015788989998898764114877469-9993059998999999
Q gi|254780313|r 129 RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF-LVKTFQGGTTNDILCL 195 (227)
Q Consensus 129 ~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~f-V~K~F~G~~~~~l~~~ 195 (227)
...=...+|+||.|-| |.=.+|+..+.||.. .-..|+|.=++ |+=-..|.+.-.+-+.
T Consensus 184 ~~Ak~~~~D~vI~DTA----GRL~ID~~LM~EL~~-----iK~~~nP~EiLlVvDaM~GQdAvn~A~~ 242 (439)
T TIGR00959 184 EEAKENGFDVVIVDTA----GRLQIDEELMEELAE-----IKEILNPDEILLVVDAMTGQDAVNTAKT 242 (439)
T ss_pred HHHHHCCCCEEEEECC----CCHHHHHHHHHHHHH-----HHHHHCCCEEEECCHHCCHHHHHHHHHH
T ss_conf 9999748978997267----512555999999999-----9888688705412201021699999986
No 261
>PRK05872 short chain dehydrogenase; Provisional
Probab=59.78 E-value=14 Score=17.74 Aligned_cols=112 Identities=18% Similarity=0.268 Sum_probs=60.1
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC--C----CCC-CCCEEEECCCCHHHHHHHHHHHCC---CCC
Q ss_conf 796788850455306899999706878832786411213--3----346-981783011220799999997313---887
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD--M----EPI-LGVKFFKFDFLDLDSWEFIRQAIG---GNP 136 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~--~----~~i-~gv~~~~gDi~~~~~~~~i~~~l~---~~~ 136 (227)
.|.++|=-|++-|==...| +.....| .+|+.+|+.+ . +.+ ..+.++.+|+++.+..+.+.+... ++.
T Consensus 8 ~gKvalITGassGIG~aiA-~~la~~G--a~Vvl~dr~~~~l~~~~~~lg~~~~~~~~DVtd~~~v~~~v~~i~~~~G~i 84 (296)
T PRK05872 8 DGKVVFVTGAARGVGAELA-RRLHARG--AKVALVDLEEAELAALAAELGDRVLTVVADVTDLAAMQAAAEEAVERFGGI 84 (296)
T ss_pred CCCEEEEECCCCHHHHHHH-HHHHHCC--CEEEEEECCHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHCCC
T ss_conf 9987999271058999999-9999879--989999899999999999838873899982799999999999999971998
Q ss_pred CEEEECCCHHHCC-CCCCHH---HHHHHHHHHHHHH----HH-HCCCCCCEEEE
Q ss_conf 4897532021102-221015---7889899988987----64-11487746999
Q gi|254780313|r 137 DLVLSDMAYPTIG-HRKIDH---LRTMSLCEAATFF----AL-EMLNIGGDFLV 181 (227)
Q Consensus 137 DlVlSDmapn~SG-~~~~D~---~~~~~L~~~al~~----A~-~~Lk~gG~fV~ 181 (227)
|+++.-.+-...| ..+.|. .+.++++...... ++ .+.+.+|..|.
T Consensus 85 DiLVnNAGi~~~~~~~~~~~e~~~~v~dVNl~G~~~~~ra~lp~m~~~~G~IVn 138 (296)
T PRK05872 85 DVVVANAGIASYGSVLQVDPAAFRRVIDVNLLGVFHTVRATLPAVIERRGYVLQ 138 (296)
T ss_pred CEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 787655625799764219989972584244599999999999999977998999
No 262
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=59.62 E-value=15 Score=17.72 Aligned_cols=43 Identities=7% Similarity=0.077 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHCCCCCCEEEEE------EEC----CC--CHHHHHHHHHHHCC
Q ss_conf 989998898764114877469999------305----99--98999999986258
Q gi|254780313|r 159 MSLCEAATFFALEMLNIGGDFLVK------TFQ----GG--TTNDILCLLKKHFQ 201 (227)
Q Consensus 159 ~~L~~~al~~A~~~Lk~gG~fV~K------~F~----G~--~~~~l~~~l~~~F~ 201 (227)
+.|......+..-++...|..|.+ +|. +. .....+..+++...
T Consensus 155 i~LT~~E~~lL~~L~~~~g~vvsre~L~~~vwg~~~~~~~rtidv~I~rLRkKL~ 209 (232)
T PRK10955 155 LELTGTEFTLLYLLAQHLGQVVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLP 209 (232)
T ss_pred EECCHHHHHHHHHHHHCCCCEECHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 9668999999999997899509799999997188988885829999999999541
No 263
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=59.13 E-value=15 Score=17.67 Aligned_cols=113 Identities=15% Similarity=0.200 Sum_probs=56.2
Q ss_pred CCCEEEEEECCCC-HHHHHHHHHHCCCCCCEEEEEECCC--------CCCCCCCCE-EEECCCCHHHHHHHHHHHCC---
Q ss_conf 7967888504553-0689999970687883278641121--------333469817-83011220799999997313---
Q gi|254780313|r 67 SNRRIVDLGSSPG-SWSQVAARITGSNANNTRVVAIDIL--------DMEPILGVK-FFKFDFLDLDSWEFIRQAIG--- 133 (227)
Q Consensus 67 ~g~~VlDLGaaPG-gWsQva~~~~~~~~~~~~VigVDl~--------~~~~i~gv~-~~~gDi~~~~~~~~i~~~l~--- 133 (227)
.|.++|=-|++-| |--.-+++.....|. .|+-+... ++..-.|.. ..+.|+++++..+.+.+.+.
T Consensus 7 ~GK~alVTGaa~g~Gig~aia~~~~~~Ga--~V~i~~~~~~~~~~~~~l~~~~g~~~~~~~Dvt~~~~v~~~~~~~~~~~ 84 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKKHGA--ELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIKEKW 84 (260)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHCCC--EEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 99989998999966899999999998799--9999668679999999999843837698657999999999999999986
Q ss_pred CCCCEEEECCCHH----HCCC---CCC-HHHHHHHHHHHH----HHHHHHCCCCCCEEEE
Q ss_conf 8874897532021----1022---210-157889899988----9876411487746999
Q gi|254780313|r 134 GNPDLVLSDMAYP----TIGH---RKI-DHLRTMSLCEAA----TFFALEMLNIGGDFLV 181 (227)
Q Consensus 134 ~~~DlVlSDmapn----~SG~---~~~-D~~~~~~L~~~a----l~~A~~~Lk~gG~fV~ 181 (227)
+++|+++.-++.. ..+. .+. |-...++++... ...+...++.+|..|.
T Consensus 85 G~iDiLVnnag~~~~~~~~~~~~d~~~~~~~~~~~~n~~~~~~~~~~a~~~m~~~GsIi~ 144 (260)
T PRK06603 85 GSFDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHDGGSIVT 144 (260)
T ss_pred CCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 997789964423777656775102989999999999989999999997787417973023
No 264
>pfam05891 Hydroxy-O-Methy Putative hydroxyindole-O-methyltransferase. This family of proteins is a putative hydroxyindole-O-methyltransferase and by homology, is expected to catalyse the conversion of N-acetyl serotonin to melatonin. The protein is expressed in the tail neuron PVT and in uterine cells [worm-base].
Probab=58.17 E-value=15 Score=17.56 Aligned_cols=93 Identities=20% Similarity=0.232 Sum_probs=42.6
Q ss_pred CEEEEEECCCCHHHHH-HHHHHCCCCCCEEEEEECCCCCCCCCC----C-------EEEECCCCHHHHHHHHHHHCCCCC
Q ss_conf 6788850455306899-999706878832786411213334698----1-------783011220799999997313887
Q gi|254780313|r 69 RRIVDLGSSPGSWSQV-AARITGSNANNTRVVAIDILDMEPILG----V-------KFFKFDFLDLDSWEFIRQAIGGNP 136 (227)
Q Consensus 69 ~~VlDLGaaPGgWsQv-a~~~~~~~~~~~~VigVDl~~~~~i~g----v-------~~~~gDi~~~~~~~~i~~~l~~~~ 136 (227)
...||+||+=|=-|.- ..... =-||+.+ |++. + .--.++++....++... -.+++
T Consensus 57 ~~alDcGAGIGRVTk~lL~~~f---------~~VDlVE--pv~~Fl~~ak~~l~~~~~~~~~~~~~gLQdf~P--~~~~Y 123 (217)
T pfam05891 57 LVALDCGAGIGRVTKNLLLPLF---------SKVDLVE--PVEDFLAKAKEYLAEEKKKVGNFFCVGLQDFTP--EEGRY 123 (217)
T ss_pred CEEEECCCCCCEECHHHHHHHC---------CEEEEEC--CCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCC--CCCEE
T ss_conf 2665426763611266788754---------8135754--449999999998740379765389736101689--99817
Q ss_pred CEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf 48975320211022210157889899988987641148774699993
Q gi|254780313|r 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT 183 (227)
Q Consensus 137 DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~ 183 (227)
|+|-+-= +.|+ -+|. +|+. =|.-|..-|++||..|+|=
T Consensus 124 D~IW~QW---~~gh-LtD~----dlv~-Fl~RCk~~L~~~G~IvvKE 161 (217)
T pfam05891 124 DLIWIQW---CIGH-LTDE----DLVA-FLKRCKSGLKPNGIIVIKE 161 (217)
T ss_pred EEEEEHH---HHCC-CCHH----HHHH-HHHHHHHHCCCCCEEEEEE
T ss_conf 6998058---4521-8889----9999-9999998478986499842
No 265
>pfam01555 N6_N4_Mtase DNA methylase. Members of this family are DNA methylases. The family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases.
Probab=57.75 E-value=16 Score=17.52 Aligned_cols=41 Identities=22% Similarity=0.267 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHH-HHHHHHCC
Q ss_conf 8898999889876411487746999930599989999-99986258
Q gi|254780313|r 157 RTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDIL-CLLKKHFQ 201 (227)
Q Consensus 157 ~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~-~~l~~~F~ 201 (227)
.-.+|.+..+ ......|..|+=-|-|+++..+. ..+.+.|-
T Consensus 166 kP~~L~~~~I----~~~s~~gd~VlDpF~GSGTT~~Aa~~l~R~~i 207 (221)
T pfam01555 166 KPEALLERLI----LASTNPGDIVLDPFAGSGTTGAAAKELGRNFI 207 (221)
T ss_pred CCHHHHHHHH----HHCCCCCCEEEECCCCCHHHHHHHHHHCCEEE
T ss_conf 9599999999----97099979999899982799999998299599
No 266
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=56.87 E-value=16 Score=17.43 Aligned_cols=112 Identities=15% Similarity=0.201 Sum_probs=61.8
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC--CCCCCCCEEEECCCCHHHHHHHHHHHCC---CCCCEEEE
Q ss_conf 796788850455306899999706878832786411213--3346981783011220799999997313---88748975
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD--MEPILGVKFFKFDFLDLDSWEFIRQAIG---GNPDLVLS 141 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~--~~~i~gv~~~~gDi~~~~~~~~i~~~l~---~~~DlVlS 141 (227)
.|.++|=.|++.|==...|.++. ..| .+|+.+|... ...-..+..++.|+++++..+.+.+... ++.|+++.
T Consensus 7 ~gK~alITG~s~GIG~aia~~la-~~G--a~V~~~~r~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDilVn 83 (253)
T PRK08220 7 SGKTVWVTGAAQGIGYAVALAFV-EAG--AKVIGFDQAFEQLNEQYPFATFVLDVADAAAVAQVCQRLLAETGPLDVLVN 83 (253)
T ss_pred CCCEEEEECCCCHHHHHHHHHHH-HCC--CEEEEEECCHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 99989995885689999999999-879--999999788778748997799997379999999999999997399888998
Q ss_pred CCCHHHCCC-CCCH---HHHHHHHHHHHH----HHHHHCCC--CCCEEEE
Q ss_conf 320211022-2101---578898999889----87641148--7746999
Q gi|254780313|r 142 DMAYPTIGH-RKID---HLRTMSLCEAAT----FFALEMLN--IGGDFLV 181 (227)
Q Consensus 142 Dmapn~SG~-~~~D---~~~~~~L~~~al----~~A~~~Lk--~gG~fV~ 181 (227)
-.+....|. .+.+ -...++++.... ..+...++ .+|..|.
T Consensus 84 nAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~~~G~IV~ 133 (253)
T PRK08220 84 VAGVLRMGATDSLSDEDWQQTFAVNAGGVFNLSRAVMPQFRRQRGGAIVT 133 (253)
T ss_pred CCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99878999804499999999999974638999999998777738965999
No 267
>pfam10356 DUF2034 Protein of unknown function (DUF2034). This protein is expressed in fungi but its function is unknown.
Probab=56.61 E-value=16 Score=17.40 Aligned_cols=90 Identities=12% Similarity=0.172 Sum_probs=53.1
Q ss_pred EEEECCCCHHHHHHHHHHHCCCCCCEEEE----CCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC-----------
Q ss_conf 78301122079999999731388748975----320211022210157889899988987641148774-----------
Q gi|254780313|r 113 KFFKFDFLDLDSWEFIRQAIGGNPDLVLS----DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG----------- 177 (227)
Q Consensus 113 ~~~~gDi~~~~~~~~i~~~l~~~~DlVlS----Dmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG----------- 177 (227)
+.++|-.++..+...+.++++. +++.-+ |.+-|.-|.|+.++...++.......++.. ++.||
T Consensus 2 tv~~GT~yE~~v~~~L~~~Ln~-~~L~~~GG~~D~GiDl~G~W~l~~~~~~~~~~~~~~~~~~-~~~~~~~~kp~~~~~~ 79 (185)
T pfam10356 2 TVFRGTLYELTVQRELHKKLNS-FSLRRVGGAYDGGVDIVGKWNLPDIWEIERDMPVDEFPSK-LKCGSIRLKPLKYRII 79 (185)
T ss_pred CEEEECHHHHHHHHHHHHHHCC-CCEEEECCCCCCCCEEEEEEECCCHHHHHHCCCCCCCCCH-HCCCCCCCCCCCCCCC
T ss_conf 3356014399999999975273-5516634767887107888608867765330332223301-0147654454323334
Q ss_pred -------EEE-EEEECCCCHHHHHHHHHHHCCEEE
Q ss_conf -------699-993059998999999986258469
Q gi|254780313|r 178 -------DFL-VKTFQGGTTNDILCLLKKHFQKVI 204 (227)
Q Consensus 178 -------~fV-~K~F~G~~~~~l~~~l~~~F~~V~ 204 (227)
.+| ||.|...-...+++.|.-.|....
T Consensus 80 ~~~~~l~VLVQCKa~~~Ki~p~~vREL~G~~~~~~ 114 (185)
T pfam10356 80 PLAPPLRVLVQCKALKKKIGPRLVRELEGTFSSHV 114 (185)
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 56788459998627777798668887764786543
No 268
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=56.28 E-value=17 Score=17.37 Aligned_cols=98 Identities=17% Similarity=0.219 Sum_probs=58.3
Q ss_pred HHHHHCCCHHHHHHHHHCC-HHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC-
Q ss_conf 9996408999999988184-47999999999864583137967888504553068999997068788327864112133-
Q gi|254780313|r 29 WLNRHINDPYVQRAQLEGW-RARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM- 106 (227)
Q Consensus 29 W~~r~~~D~y~~~Ak~~gy-rsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~- 106 (227)
|--. ..|.|..+-+.+.+ .|+-++--. -.+=..+-.+++++||-=|-=+..+..+.+ ...+.||+|..-
T Consensus 9 Wage-FG~~Yi~RN~~~~~~~sn~~~f~~----~l~~~~~ikSilE~GcNIGlNL~ALk~L~P----~~~l~gIEIN~~A 79 (204)
T TIGR03587 9 WAGE-FGKEYIDRNSRQSLVAAKLAMFAR----ALNRLPKIASILELGANIGMNLAALKRLLP----FKHIYGVEINEYA 79 (204)
T ss_pred HHHH-HCHHHHHHCCCHHHHHHHHHHHHH----HHHCCCCCCEEEEECCCCCHHHHHHHHHCC----CCEEEEEECCHHH
T ss_conf 5033-366877727734778889999999----983578888268966884776999987487----4404999539999
Q ss_pred -----CCCCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf -----3469817830112207999999973138874897532
Q gi|254780313|r 107 -----EPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDM 143 (227)
Q Consensus 107 -----~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDm 143 (227)
+.++.+...+|.|.+.. ...++|+|++.+
T Consensus 80 ~~~lk~~~~~~~i~n~SIld~~--------~~~~~DLv~t~G 113 (204)
T TIGR03587 80 VEKAKAYLPNINIIQGSLFDPF--------KDNFFDLVLTKG 113 (204)
T ss_pred HHHHHHHCCCCEEEECCCCCCC--------CCCCEEEEEEEE
T ss_conf 9999865897269965334667--------787423899830
No 269
>pfam10237 N6-adenineMlase Probable N6-adenine methyltransferase. This is a protein of approximately 200 residues which is conserved from plants to humans. It contains a highly conserved QFW motif close to the N-terminus and a DPPF motif in the centre. The DPPF motif is characteristic of N-6 adenine-specific DNA methylases, and this family is found in eukaryotes.
Probab=56.24 E-value=17 Score=17.36 Aligned_cols=133 Identities=17% Similarity=0.213 Sum_probs=74.3
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCHH
Q ss_conf 79678885045530689999970687883278641121333469817830112207999999973138874897532021
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYP 146 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDmapn 146 (227)
++ ..+-+=|+|--|-.+ +..........++-.|-.- + ..|-.|+.=|+.++.. +.+.+.+.+|+|+.| |.
T Consensus 25 ~~-~~IA~lS~PSly~~l--~~~~~~~~~v~LfEyD~RF-~-~~~~~FvfYDyn~P~~---lp~~l~~~fD~vi~D--PP 94 (161)
T pfam10237 25 EG-TVIACVSAPSVYAAL--KERPIPTKNVYLLEYDKRF-A-VYGGEFVFYDYNKPLE---LPEQLKGKFDRVIAD--PP 94 (161)
T ss_pred CC-CEEEEECCCHHHHHH--HHCCCCCCCEEEEEECHHH-H-HCCCCEEECCCCCCCC---CHHHHHCCCCEEEEC--CC
T ss_conf 99-879998586899999--8434887737996543058-7-6799416777898010---879970867889989--99
Q ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEE
Q ss_conf 1022210157889899988987641148774699993059998999999986258469976866575582498983
Q gi|254780313|r 147 TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLA 222 (227)
Q Consensus 147 ~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~~~F~~V~~~KP~aSR~~S~E~Ylv~ 222 (227)
. .+.+........+..+++++|.++. -.|....+++..+-. -+...|.|.-.|+=+-|.+..+
T Consensus 95 F---------Lseec~~K~a~t~~~L~k~~~kli~--~Tg~~~~~~~~kll~--~~~~~F~P~h~~~L~Nef~~y~ 157 (161)
T pfam10237 95 F---------LSEECLTKTAITIKLLLKPDSKLLL--CTGERMEDLAAKLLG--LKITDFLPEHERNLSNEFRCYA 157 (161)
T ss_pred C---------CCHHHHHHHHHHHHHHHCCCCEEEE--ECHHHHHHHHHHHCC--CEEEEEEECCCCCCCCEEEEEE
T ss_conf 9---------8999999999999998089987999--348999999999729--8241257056677744057774
No 270
>TIGR00138 gidB methyltransferase GidB; InterPro: IPR003682 GidB (glucose-inhibited division protein B) appears to be present and in a single copy in all complete eubacterial genomes so far. Its mode of action is unknown, but a methytransferase fold is reported from the crystal structure. It may be a family of bacterial glucose inhibited division proteins that are involved in the regulation of cell division .; GO: 0007049 cell cycle.
Probab=56.11 E-value=7.1 Score=19.65 Aligned_cols=108 Identities=19% Similarity=0.353 Sum_probs=57.5
Q ss_pred HHHHHHCCCCC---CCCEEEEEECCCCHHHHHHHH-HHCCCCCCEEEEEECCCC--------C---CCCCCCEEEECCCC
Q ss_conf 99986458313---796788850455306899999-706878832786411213--------3---34698178301122
Q gi|254780313|r 56 LQINEKHQILQ---SNRRIVDLGSSPGSWSQVAAR-ITGSNANNTRVVAIDILD--------M---EPILGVKFFKFDFL 120 (227)
Q Consensus 56 ~eId~kf~l~k---~g~~VlDLGaaPGgWsQva~~-~~~~~~~~~~VigVDl~~--------~---~~i~gv~~~~gDi~ 120 (227)
+++-+-+...+ |+..++|+|++|| +==+... ...++- ++.=+|-.. . =.++|+..+++.+.
T Consensus 35 l~~~~~~~~~~~~r~~~~~~DiGSG~G-fPGipL~Ci~~p~~---~~~Lles~~KK~~FL~~v~~~L~L~N~~i~~~R~E 110 (197)
T TIGR00138 35 LKLLELFDISKNQRTGKKVIDIGSGAG-FPGIPLACILRPEL---KLTLLESNKKKVNFLKEVKKELGLNNVEILNGRVE 110 (197)
T ss_pred HHHHCCCCCCCCCCCCCEEEEECCCCC-HHHHHHHHHCCCCC---EEEEECCCCCHHHHHHHHHHHHCCCCCHHEEHHHH
T ss_conf 433000024566663312677347897-14565342205764---28984277406899999999838998242001125
Q ss_pred HHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCH
Q ss_conf 079999999731388748975320211022210157889899988987641148774699993059998
Q gi|254780313|r 121 DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT 189 (227)
Q Consensus 121 ~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~ 189 (227)
+.- . . .....+|+|+|=+ . .+ ....++++...+++||.|++ +.|...
T Consensus 111 ~~g-~---~-~~~~~~D~~~~RA---------l-----~~-l~~~~e~~~~L~~~~G~~~~--~KG~~~ 157 (197)
T TIGR00138 111 DLG-S---K-QHEEQFDVITSRA---------L-----VS-LNELLELTLPLLKVGGYFLA--YKGKYL 157 (197)
T ss_pred HCC-C---C-CCCCCCCEEEECC---------C-----HH-HHHHHHHHHHCCCCCCEEEE--ECCCCH
T ss_conf 505-5---4-5333578789803---------1-----02-46888866303788978999--708665
No 271
>KOG1197 consensus
Probab=55.71 E-value=17 Score=17.31 Aligned_cols=79 Identities=11% Similarity=0.185 Sum_probs=41.9
Q ss_pred HHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCC----CCCCCCCCEEEECCCCHHHHHHHHHHHCC
Q ss_conf 98645831379678885045530689999970687883278641121----33346981783011220799999997313
Q gi|254780313|r 58 INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL----DMEPILGVKFFKFDFLDLDSWEFIRQAIG 133 (227)
Q Consensus 58 Id~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~----~~~~i~gv~~~~gDi~~~~~~~~i~~~l~ 133 (227)
|.+-|++ +||++||=-. |-||---.+++.+...+. .+|+.--- .+..-.|++.. -|--.++..+++.++-+
T Consensus 138 l~e~y~v-kpGhtVlvha-AAGGVGlll~Ql~ra~~a--~tI~~asTaeK~~~akenG~~h~-I~y~~eD~v~~V~kiTn 212 (336)
T KOG1197 138 LFEAYNV-KPGHTVLVHA-AAGGVGLLLCQLLRAVGA--HTIATASTAEKHEIAKENGAEHP-IDYSTEDYVDEVKKITN 212 (336)
T ss_pred HHHHCCC-CCCCEEEEEE-CCCCHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHCCCCCE-EECCCHHHHHHHHHCCC
T ss_conf 9986588-9997899983-156287999999975286--79997253788999986487430-00450569999984148
Q ss_pred C-CCCEEEE
Q ss_conf 8-8748975
Q gi|254780313|r 134 G-NPDLVLS 141 (227)
Q Consensus 134 ~-~~DlVlS 141 (227)
+ .+|+|.-
T Consensus 213 gKGVd~vyD 221 (336)
T KOG1197 213 GKGVDAVYD 221 (336)
T ss_pred CCCCEEEEC
T ss_conf 877105632
No 272
>pfam10354 DUF2431 Domain of unknown function (DUF2431). This is the N-terminal domain of a family of proteins found from plants to humans. The function is not known.
Probab=55.42 E-value=17 Score=17.28 Aligned_cols=75 Identities=23% Similarity=0.199 Sum_probs=47.7
Q ss_pred CCEEEEC-CCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHH----HHHHHHHHHHHCCCCCCEEEEEEEC
Q ss_conf 8178301-1220799999997313887489753202110222101578898----9998898764114877469999305
Q gi|254780313|r 111 GVKFFKF-DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMS----LCEAATFFALEMLNIGGDFLVKTFQ 185 (227)
Q Consensus 111 gv~~~~g-Di~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~----L~~~al~~A~~~Lk~gG~fV~K~F~ 185 (227)
|+..+.| |.+++.....+ -..++|.|+=-- |.+ |....|..+.+. |...-+.-|..+|+++|-..+-+++
T Consensus 53 g~~V~~gVDAt~l~~~~~~---~~~~fD~IiFNF-PH~-G~~~~~~~~~i~~nr~Ll~~Ff~sa~~~l~~~G~i~vTl~~ 127 (166)
T pfam10354 53 GVTVLHGVDATKLKKHFSL---KKNRFDRIIFNF-PHA-GGKIKDSDRNIRLNRELLRGFFKNASELLKPGGEIHVTLKD 127 (166)
T ss_pred CCEEEEEEECCCCCCCCCC---CCCCCCEEEECC-CCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 9959985744536668443---478357899879-988-88774125558999999999999999982799899999538
Q ss_pred CCCHH
Q ss_conf 99989
Q gi|254780313|r 186 GGTTN 190 (227)
Q Consensus 186 G~~~~ 190 (227)
|....
T Consensus 128 g~py~ 132 (166)
T pfam10354 128 GEPYN 132 (166)
T ss_pred CCCCC
T ss_conf 99987
No 273
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=54.73 E-value=17 Score=17.21 Aligned_cols=16 Identities=25% Similarity=0.551 Sum_probs=11.1
Q ss_pred CCCEEEEEECCCCHHH
Q ss_conf 7967888504553068
Q gi|254780313|r 67 SNRRIVDLGSSPGSWS 82 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWs 82 (227)
.+..|-=+|++|.|-+
T Consensus 536 ~gkKVAVIGsGPAGLa 551 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLS 551 (1012)
T ss_pred CCCEEEEECCCHHHHH
T ss_conf 9988999897789999
No 274
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=54.50 E-value=18 Score=17.19 Aligned_cols=31 Identities=16% Similarity=0.282 Sum_probs=17.9
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEE
Q ss_conf 379678885045530689999970687883278
Q gi|254780313|r 66 QSNRRIVDLGSSPGSWSQVAARITGSNANNTRV 98 (227)
Q Consensus 66 k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~V 98 (227)
+.|..|-=+|++|.|-+ |+......|...+|
T Consensus 548 ~tgKKVAVIGsGPAGLa--AA~~Lar~Gh~VTV 578 (1032)
T PRK09853 548 GSRHPVAVIGAGPAGLA--AGYFLARAGHPVTV 578 (1032)
T ss_pred CCCCEEEEECCCHHHHH--HHHHHHHCCCCEEE
T ss_conf 88997999896889999--99999977993699
No 275
>KOG2078 consensus
Probab=54.37 E-value=5 Score=20.62 Aligned_cols=49 Identities=24% Similarity=0.422 Sum_probs=37.4
Q ss_pred CHHHHHHHHHHHHHHC-CCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC
Q ss_conf 4479999999998645-8313796788850455306899999706878832786411213
Q gi|254780313|r 47 WRARSAYKLLQINEKH-QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD 105 (227)
Q Consensus 47 yrsRaafKL~eId~kf-~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~ 105 (227)
|+|| |.-.++++ .+|+||..|-|+.|+-|-+.-=|+. .+++|++.|+.|
T Consensus 232 WnsR----L~~Eherlsg~fk~gevv~D~FaGvGPfa~Pa~k------K~crV~aNDLNp 281 (495)
T KOG2078 232 WNSR----LSHEHERLSGLFKPGEVVCDVFAGVGPFALPAAK------KGCRVYANDLNP 281 (495)
T ss_pred EECC----CHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHH------CCCEEEECCCCH
T ss_conf 5041----0147888760158741334440476743350222------585899347997
No 276
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=54.29 E-value=8.9 Score=19.06 Aligned_cols=28 Identities=14% Similarity=0.109 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEEECC
Q ss_conf 479999999998645831379678885045
Q gi|254780313|r 48 RARSAYKLLQINEKHQILQSNRRIVDLGSS 77 (227)
Q Consensus 48 rsRaafKL~eId~kf~l~k~g~~VlDLGaa 77 (227)
.|.+.=++.+.-++. -....+||=.|..
T Consensus 148 ~S~~m~~v~~~i~~~--A~s~~~VLI~GEs 175 (457)
T PRK11361 148 NSPAMMDICKDTAKI--ALSQASVLISGES 175 (457)
T ss_pred CCHHHHHHHHHHHHH--HCCCCCEEEECCC
T ss_conf 699999999999998--4889958998899
No 277
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=54.27 E-value=18 Score=17.16 Aligned_cols=86 Identities=19% Similarity=0.230 Sum_probs=52.7
Q ss_pred HHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CCC-CCCCEEEECCCCHHHHH
Q ss_conf 99986458313796788850455306899999706878832786411213---------334-69817830112207999
Q gi|254780313|r 56 LQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------MEP-ILGVKFFKFDFLDLDSW 125 (227)
Q Consensus 56 ~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~~-i~gv~~~~gDi~~~~~~ 125 (227)
+.|.+-|+| .|.++|=-|++-|==...| +.....|- .|+-+|... ++. -..+.++++|+++++..
T Consensus 2 m~i~~lf~L--~gKvalVTG~s~GIG~aia-~~la~~Ga--~V~i~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v 76 (259)
T PRK08213 2 MTVLELFDL--TGKTALVTGGSRGLGLQIA-EALGEAGA--RVVLSARKAEELEEAAAHLEALGIDALWLAADVADEADI 76 (259)
T ss_pred CCHHHHHCC--CCCEEEEECCCCHHHHHHH-HHHHHCCC--EEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHH
T ss_conf 776787399--9998999487768999999-99998699--999997988999999999995499589998268999999
Q ss_pred HHHHHHCC---CCCCEEEECCCHH
Q ss_conf 99997313---8874897532021
Q gi|254780313|r 126 EFIRQAIG---GNPDLVLSDMAYP 146 (227)
Q Consensus 126 ~~i~~~l~---~~~DlVlSDmapn 146 (227)
+.+.+..- ++.|+++.-.+..
T Consensus 77 ~~~v~~~~~~~G~iDiLVNNAG~~ 100 (259)
T PRK08213 77 ERLAEETLERFGHIDILVNNAGAT 100 (259)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 999999999839998999899778
No 278
>PRK09242 tropinone reductase; Provisional
Probab=53.67 E-value=18 Score=17.10 Aligned_cols=117 Identities=9% Similarity=0.059 Sum_probs=61.4
Q ss_pred HHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CC-CCC--CCEEEECCCCHHHHHHH
Q ss_conf 6458313796788850455306899999706878832786411213---------33-469--81783011220799999
Q gi|254780313|r 60 EKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------ME-PIL--GVKFFKFDFLDLDSWEF 127 (227)
Q Consensus 60 ~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~-~i~--gv~~~~gDi~~~~~~~~ 127 (227)
.+|+| .|.++|=-|++-|= =.-+++.....|. .|+-+|... +. ..+ .++++++|+++++..+.
T Consensus 4 ~~f~L--~gK~alITGgs~GI-G~a~a~~la~~Ga--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~~~~ 78 (258)
T PRK09242 4 HRWRL--DGQTALITGASKGI-GLAIARELLGLGA--DVLIVARDADALAQARDELAEEFPERELHGLAADVSDDEDRRA 78 (258)
T ss_pred CCCCC--CCCEEEEECCCCHH-HHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHH
T ss_conf 77637--99999994848689-9999999998799--8999969889999999999864479729999930799999999
Q ss_pred HHHHCC---CCCCEEEECCCHHHCCCC-CC---HHHHHHHHHHHHH----HHHHHCCC--CCCEEEE
Q ss_conf 997313---887489753202110222-10---1578898999889----87641148--7746999
Q gi|254780313|r 128 IRQAIG---GNPDLVLSDMAYPTIGHR-KI---DHLRTMSLCEAAT----FFALEMLN--IGGDFLV 181 (227)
Q Consensus 128 i~~~l~---~~~DlVlSDmapn~SG~~-~~---D~~~~~~L~~~al----~~A~~~Lk--~gG~fV~ 181 (227)
+.+... ++.|+++.-.+.+..+.. +. |-...++++.... ..+...++ .+|..|.
T Consensus 79 ~~~~~~~~~g~iDiLVnnAG~~~~~~~~~~s~~~w~~~~~vNl~~~~~l~~~~~p~m~~~~~G~IIn 145 (258)
T PRK09242 79 ILDWVEDHWDGLHILVNNAGGNITKAAIDYTEDEWRGIFETNLFSAFELSRYAYPLLKRHAASSIVN 145 (258)
T ss_pred HHHHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 9999999749997999899889999800199999999999981999999999999999759927999
No 279
>TIGR02418 acolac_catab acetolactate synthase, catabolic; InterPro: IPR012782 Acetolactate synthase is a thiamin pyrophosphate-dependent enzyme that combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. It exists in two distinct forms that have different properties, though they are clearly related , . The biosynthetic form, found in plants, fungi and bacteria, is involved in the biosynthesis of branched-chain amino acids and contains non-catalytic FAD. The catabolic form is found only in some bacteria, participates in butanediol fermentation, and does not contain FAD. This entry represents the catabolic form of acetolactate synthase, generally found in species that posses acetolactate decarboxylase, which is often encoded in the same operon. The enzyme is thought to be a homotetramer, though this has not conclusively been shown. Each monomer consists of three distinct domains, designated, starting from the N-terminus, as alpha, beta and gamma . The core of the alpha and gamma domains is a six-stranded parallel beta sheet surrounded by alpha helices, while the the beta domain forms a double Rossman fold. The thiamin pyrophosphate cofactor has an unusual conformation that has not been seen in other enzymes using this cofactor, including the biosynthetic form of acetolactate synthase. The active site is located in a funnel at the dimer interface, bordered by residues from all three domains.; GO: 0000287 magnesium ion binding, 0003984 acetolactate synthase activity, 0030976 thiamin pyrophosphate binding, 0050660 FAD binding.
Probab=52.95 E-value=17 Score=17.27 Aligned_cols=136 Identities=15% Similarity=0.161 Sum_probs=76.6
Q ss_pred CCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCC---CEEEECCCCHHHHHHHHHHHCCC-----
Q ss_conf 8313796788850455306899999706878832786411213334698---17830112207999999973138-----
Q gi|254780313|r 63 QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILG---VKFFKFDFLDLDSWEFIRQAIGG----- 134 (227)
Q Consensus 63 ~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~i~g---v~~~~gDi~~~~~~~~i~~~l~~----- 134 (227)
.|||..+.|+=+|.-|= +|=.+..+.+ .+.+||.||..+.+--.+ ..=+.||| ..|.+.|.+.+.+
T Consensus 265 ~LLk~aDLvItIGYdPI---EYep~~WN~~-~~~~Iv~iD~~~A~i~~~yqP~~eLvGdi--a~tl~~l~~~~~~~~~L~ 338 (553)
T TIGR02418 265 KLLKQADLVITIGYDPI---EYEPRNWNSE-LDATIVHIDVEPAEIDNNYQPDLELVGDI--ASTLDLLAERVEGFYELP 338 (553)
T ss_pred HHHHHCCEEEEECCCCE---ECCHHHCCCC-CCCEEEEEEEEEEEHHHCCCCCHHHHCCH--HHHHHHHHHHHCCCCCCC
T ss_conf 57756697898338850---3075544778-87206897314421200368614432572--777999958624661058
Q ss_pred --------------------------------------------CCC-EEEECCCHHHCCCCCCHHHHHHH---H----H
Q ss_conf --------------------------------------------874-89753202110222101578898---9----9
Q gi|254780313|r 135 --------------------------------------------NPD-LVLSDMAYPTIGHRKIDHLRTMS---L----C 162 (227)
Q Consensus 135 --------------------------------------------~~D-lVlSDmapn~SG~~~~D~~~~~~---L----~ 162 (227)
.-| .|++||.-.- +|=-=+.+|++ | -
T Consensus 339 ~~~~~~L~~l~~~~~~~~~~~~~~~~~~Gl~HPL~ii~~~Q~~v~dD~Tvt~D~GShy--IWmARyf~Sy~AR~lLiSNG 416 (553)
T TIGR02418 339 EDAQDILEDLKQQIEELDEVKADLKQAHGLLHPLEIIKAMQAIVTDDVTVTVDIGSHY--IWMARYFKSYRARHLLISNG 416 (553)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCHHHHHHHHHHCCCCCEEEEECCHHH--HHHHHHHCCCCCCEEEEECC
T ss_conf 8899999999999986531787521068630538899999974489816987043058--88887622567540243357
Q ss_pred HHHHHHH------HHCCCCCCEEEEEEECCC---CHHHHHHHHHHHCCEEEEE
Q ss_conf 9889876------411487746999930599---9899999998625846997
Q gi|254780313|r 163 EAATFFA------LEMLNIGGDFLVKTFQGG---TTNDILCLLKKHFQKVIHV 206 (227)
Q Consensus 163 ~~al~~A------~~~Lk~gG~fV~K~F~G~---~~~~l~~~l~~~F~~V~~~ 206 (227)
+..|.+| ..+||||--.|-=-=+|. ...||...++.+-.-||++
T Consensus 417 mQTlGVALPWAI~AaLlrP~~KVVSVSGDGGFLfSsmELETAVRLk~nIvHIi 469 (553)
T TIGR02418 417 MQTLGVALPWAIGAALLRPNTKVVSVSGDGGFLFSSMELETAVRLKLNIVHII 469 (553)
T ss_pred CCHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCEEEEE
T ss_conf 50311121899999973889758998728312002578899998408948999
No 280
>pfam11324 DUF3126 Protein of unknown function (DUF3126). This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=52.47 E-value=19 Score=16.98 Aligned_cols=32 Identities=22% Similarity=0.518 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHCCE-EEEECCCCCCCCCCEEEE
Q ss_conf 89999999862584-699768665755824989
Q gi|254780313|r 189 TNDILCLLKKHFQK-VIHVKPVASRAESVEMFL 220 (227)
Q Consensus 189 ~~~l~~~l~~~F~~-V~~~KP~aSR~~S~E~Yl 220 (227)
...+...|++.|.. --.+||......|.|+|+
T Consensus 2 i~klq~yLr~~F~n~~i~v~~r~k~~DSaEV~~ 34 (63)
T pfam11324 2 IKKLQAYLKRKFGNPTLRVKARPKKGDSAEVYI 34 (63)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEE
T ss_conf 589999999971999659976799998769985
No 281
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=52.47 E-value=19 Score=16.98 Aligned_cols=73 Identities=15% Similarity=0.199 Sum_probs=48.6
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCC-CCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEECCC
Q ss_conf 796788850455306899999706878832786411213334-698178301122079999999731388748975320
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP-ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~-i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDma 144 (227)
.|.+||=-|++-| -=.-+++.....| .+|+++|..+.+. -.++.+++.|++++. .+.+.+.+ ++.|+++.-.+
T Consensus 4 ~gK~alVTGas~G-IG~aia~~~a~~G--a~V~~~d~~~~~~~~~~~~~~~~Dv~~~~-v~~~~~~~-g~iDiLvNnAG 77 (237)
T PRK06550 4 MTKTVLVTGAASG-IGLAQARAFLEQG--AHVYGVDKSDKPDLSGNFHFIQLDLSSDK-LEPLFKVV-PSVDILCNTAG 77 (237)
T ss_pred CCCEEEEECCCCH-HHHHHHHHHHHCC--CEEEEEECCHHHHCCCCEEEEECCCCHHH-HHHHHHHC-CCCCEEEECCC
T ss_conf 9989999374779-9999999999879--99999708612430697389986388899-99999975-99979998988
No 282
>PRK08324 short chain dehydrogenase; Validated
Probab=51.88 E-value=19 Score=16.92 Aligned_cols=111 Identities=17% Similarity=0.170 Sum_probs=60.7
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CCCCCCCEEEECCCCHHHHHHHHH----HHCC
Q ss_conf 796788850455306899999706878832786411213---------334698178301122079999999----7313
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------MEPILGVKFFKFDFLDLDSWEFIR----QAIG 133 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~~i~gv~~~~gDi~~~~~~~~i~----~~l~ 133 (227)
.|.++|=-|+|-| -=.-+++.....| ..|+.+|+.+ +..-..+..+++|+++++..+.+. ..+
T Consensus 420 ~GKVALVTGga~G-IG~A~A~~fa~eG--A~Vvl~D~~~~~l~~~a~el~~~~~~~~~~~DVtd~~~v~~~v~~~~~~f- 495 (676)
T PRK08324 420 AGKVALVTGAAGG-IGLATAKRLAAEG--ACVVLADIDEEAAEAAAAELGGRDRALGVACDVTDEAAVQAAFEEAALAF- 495 (676)
T ss_pred CCCEEEEECCCCC-HHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHH-
T ss_conf 9987999479881-6299999999879--98999958889999999997079947999806899999999999999985-
Q ss_pred CCCCEEEECCCHHHCCC-CCC---HHHHHHHHHHHH----HHHHHHCCC---CCCEEEE
Q ss_conf 88748975320211022-210---157889899988----987641148---7746999
Q gi|254780313|r 134 GNPDLVLSDMAYPTIGH-RKI---DHLRTMSLCEAA----TFFALEMLN---IGGDFLV 181 (227)
Q Consensus 134 ~~~DlVlSDmapn~SG~-~~~---D~~~~~~L~~~a----l~~A~~~Lk---~gG~fV~ 181 (227)
|.+|++++-.+-..+|. .++ +-.++++++... ...|...++ .||..|.
T Consensus 496 GgIDiLVnNAGi~~~~~~~e~s~e~w~~~~~vNl~g~f~~~r~a~p~M~~qg~GG~IV~ 554 (676)
T PRK08324 496 GGVDIVVSNAGIALSGPIGETSDELWRRSFEVNFTGHFLVAREAVRIMKAQGTGGNLVF 554 (676)
T ss_pred CCCCEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 99888997677789988265999999999988609999999999999997699919999
No 283
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=51.65 E-value=20 Score=16.90 Aligned_cols=126 Identities=21% Similarity=0.196 Sum_probs=67.3
Q ss_pred CEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC-----C-CC-CCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 6788850455306899999706878832786411213-----3-34-698178301122079999999731388748975
Q gi|254780313|r 69 RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-----M-EP-ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLS 141 (227)
Q Consensus 69 ~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~-----~-~~-i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlS 141 (227)
++||=||| |+--++++..+..++. +.|...|-.+ + ++ ...+.+++-|+.+.+...++ +.+ +|+|++
T Consensus 2 ~~ilviGa--G~Vg~~va~~la~~~d-~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~l---i~~-~d~VIn 74 (389)
T COG1748 2 MKILVIGA--GGVGSVVAHKLAQNGD-GEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVAL---IKD-FDLVIN 74 (389)
T ss_pred CCEEEECC--CHHHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHH---HHC-CCEEEE
T ss_conf 72899898--6667999999985789-6299984888899998753346631699425675889998---725-778999
Q ss_pred CCCHHH----------CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE-ECCCCHHHHHHHHHHH-CCEEE
Q ss_conf 320211----------022210157889899988987641148774699993-0599989999999862-58469
Q gi|254780313|r 142 DMAYPT----------IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT-FQGGTTNDILCLLKKH-FQKVI 204 (227)
Q Consensus 142 Dmapn~----------SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~-F~G~~~~~l~~~l~~~-F~~V~ 204 (227)
=+-|.. +|...+|.....+- ...+....-+.|=+.|.-+ |+=.-.+-+...+... |++++
T Consensus 75 ~~p~~~~~~i~ka~i~~gv~yvDts~~~~~---~~~~~~~a~~Agit~v~~~G~dPGi~nv~a~~a~~~~~~~i~ 146 (389)
T COG1748 75 AAPPFVDLTILKACIKTGVDYVDTSYYEEP---PWKLDEEAKKAGITAVLGCGFDPGITNVLAAYAAKELFDEIE 146 (389)
T ss_pred ECCCHHHHHHHHHHHHHCCCEEECCCCCCH---HHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 287054299999999859988975467750---656548988749079716676864579999999998616564
No 284
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=51.60 E-value=6.8 Score=19.80 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=8.7
Q ss_pred CCCEEEEEECCCCHHHHHHHHHH
Q ss_conf 79678885045530689999970
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARIT 89 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~ 89 (227)
....||=.|. +|.-=+.+++.+
T Consensus 161 s~~pVLI~GE-~GTGK~~~Ar~I 182 (441)
T PRK10365 161 SEATVLIHGD-SGTGKELVARAI 182 (441)
T ss_pred CCCCEEEECC-CCHHHHHHHHHH
T ss_conf 8994899899-981099999999
No 285
>KOG3178 consensus
Probab=51.32 E-value=20 Score=16.87 Aligned_cols=53 Identities=15% Similarity=0.142 Sum_probs=28.5
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC----CCCC-CCCEEEECCCCH
Q ss_conf 13796788850455306899999706878832786411213----3346-981783011220
Q gi|254780313|r 65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD----MEPI-LGVKFFKFDFLD 121 (227)
Q Consensus 65 ~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~----~~~i-~gv~~~~gDi~~ 121 (227)
|+-....||+|++-|.-+--+...-+ ....+-.|+.. ...+ +||.++-||.+.
T Consensus 175 f~~v~~avDvGgGiG~v~k~ll~~fp----~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq 232 (342)
T KOG3178 175 FKGVNVAVDVGGGIGRVLKNLLSKYP----HIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQ 232 (342)
T ss_pred CCCCCEEEECCCCHHHHHHHHHHHCC----CCCEEECCHHHHHHHHHHHCCCCCEECCCCCC
T ss_conf 55676688758747699999997588----77255147899985223206786512364534
No 286
>TIGR01096 3A0103s03R lysine-arginine-ornithine-binding periplasmic protein; InterPro: IPR005768 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins (ABC transporters; see IPR003439 from INTERPRO) and a high affinity periplasmic solute-binding protein. The later are thought to bind the substrate in the vicinity of the inner membrane, and to transfer it to a complex of inner membrane proteins for concentration into the cytoplasm. In Gram-positive bacteria which are surrounded by a single membrane and have therefore no periplasmic region the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homolog proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute through the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition at least some solute-binding proteins function in the initiation of sensory transduction pathways. On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped into eight families of clusters, which generally correlate with the nature of the solute bound. Family 3 groups together specific amino acids and opine-binding periplasmic proteins and a periplasmic homolog with catalytic activity. ; GO: 0005215 transporter activity, 0006810 transport, 0030288 outer membrane-bounded periplasmic space.
Probab=51.10 E-value=20 Score=16.85 Aligned_cols=51 Identities=18% Similarity=0.239 Sum_probs=31.9
Q ss_pred CCEEEEEECCC-------CCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEE-CCC
Q ss_conf 83278641121-------3334698178301122079999999731388748975-320
Q gi|254780313|r 94 NNTRVVAIDIL-------DMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLS-DMA 144 (227)
Q Consensus 94 ~~~~VigVDl~-------~~~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlS-Dma 144 (227)
.+|.++|.|+- .|.--+|-..+++-+.+.+....|-.+-.+++|+|+| =|.
T Consensus 45 a~G~~~GFDvDl~~alc~~~~gD~GWdh~~c~~~~~~~~~liPsL~~k~~Dai~an~~~ 103 (333)
T TIGR01096 45 ADGKLVGFDVDLANALCKEMKGDPGWDHAKCKFVEQAFDGLIPSLKAKKVDAIMANAMS 103 (333)
T ss_pred CCCCEEEHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHCCCEEEEEECCCC
T ss_conf 89545632678999999984589996431488842756652025453806899726655
No 287
>pfam11312 DUF3115 Protein of unknown function (DUF3115). This eukaryotic family of proteins has no known function.
Probab=50.94 E-value=20 Score=16.83 Aligned_cols=73 Identities=26% Similarity=0.314 Sum_probs=40.5
Q ss_pred CCCEEEEEECCCCHHHHHHHHHH-------CCCCCCEEEEEECCCCC-------------CCC--------CCCEEEECC
Q ss_conf 79678885045530689999970-------68788327864112133-------------346--------981783011
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARIT-------GSNANNTRVVAIDILDM-------------EPI--------LGVKFFKFD 118 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~-------~~~~~~~~VigVDl~~~-------------~~i--------~gv~~~~gD 118 (227)
+..+||=+|-++|+-.--.+... ........|-+||+-+. .|+ -++.|.++|
T Consensus 79 ~~~~VlcIGGGAgaElvAla~~~~~~~~~~~~~~~~l~it~vDiAdWs~VV~~L~~~i~s~~~~~~~~~~~~~v~F~~~D 158 (288)
T pfam11312 79 STLNVLCIGGGAGAELVALAAVFRLSREHLSKSPSGLSVTLVDIADWSNVVDRLATAIRSPWVPQSIEADRFNVKFRQGD 158 (288)
T ss_pred CCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCHHHHHHHHHHHCCCCCCCCCCCCHHCEEEEEECC
T ss_conf 77656997888238999999998742431578888861789974256999999986435889866688203025466544
Q ss_pred CCHHHHHHHHHHHCCCCCCEEE
Q ss_conf 2207999999973138874897
Q gi|254780313|r 119 FLDLDSWEFIRQAIGGNPDLVL 140 (227)
Q Consensus 119 i~~~~~~~~i~~~l~~~~DlVl 140 (227)
+...+..+ +...+....++|+
T Consensus 159 vL~~~~~~-l~~l~~~~~~LiT 179 (288)
T pfam11312 159 VLSLSKDE-LIGLLGDKLDLVT 179 (288)
T ss_pred CCCCCHHH-HHHCCCCCCCCHH
T ss_conf 01378466-6530478861303
No 288
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=48.89 E-value=22 Score=16.63 Aligned_cols=79 Identities=16% Similarity=0.144 Sum_probs=48.1
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC-----------CCCCCCEEEECCCCHHHHHHHHHHHCC--
Q ss_conf 7967888504553068999997068788327864112133-----------346981783011220799999997313--
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM-----------EPILGVKFFKFDFLDLDSWEFIRQAIG-- 133 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~-----------~~i~gv~~~~gDi~~~~~~~~i~~~l~-- 133 (227)
+|.++|=.|++-|==...|.+.. ..| ..|+.+|...- ..-..+.+++.|+++++..+.+.+...
T Consensus 6 kgK~~lITGas~GIG~aia~~la-~~G--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 82 (250)
T PRK12825 6 SGRVALVTGAARGIGRAIALRLA-AAG--ADVIVHPPSDEAAAEETVAAVEALGRRAQAVQADVTDAAALEAAVEELVER 82 (250)
T ss_pred CCCEEEEECCCCHHHHHHHHHHH-HCC--CEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHH
T ss_conf 97889993895589999999999-879--989999798878999999999853994899994189999999999999997
Q ss_pred -CCCCEEEECCCHHHC
Q ss_conf -887489753202110
Q gi|254780313|r 134 -GNPDLVLSDMAYPTI 148 (227)
Q Consensus 134 -~~~DlVlSDmapn~S 148 (227)
+++|+++.-.++...
T Consensus 83 ~g~iDilInnAg~~~~ 98 (250)
T PRK12825 83 FGAIDILVNNAGITGD 98 (250)
T ss_pred CCCCCEEEECCCCCCC
T ss_conf 6999899989988999
No 289
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=48.78 E-value=14 Score=17.81 Aligned_cols=37 Identities=30% Similarity=0.558 Sum_probs=29.8
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEE-EECCCC
Q ss_conf 99998818447999999999864583137967888-504553
Q gi|254780313|r 39 VQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVD-LGSSPG 79 (227)
Q Consensus 39 ~~~Ak~~gyrsRaafKL~eId~kf~l~k~g~~VlD-LGaaPG 79 (227)
+-+++-+|| |-|-.|+++-+||++ |--+++| -||.||
T Consensus 128 FGm~~PeGy--RKAlRlm~~AekF~l--PiitfIDT~GAypG 165 (317)
T COG0825 128 FGMPRPEGY--RKALRLMKLAEKFGL--PIITFIDTPGAYPG 165 (317)
T ss_pred CCCCCCHHH--HHHHHHHHHHHHHCC--CEEEEECCCCCCCC
T ss_conf 799992688--999999999998599--87999508987788
No 290
>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]
Probab=48.52 E-value=22 Score=16.60 Aligned_cols=50 Identities=24% Similarity=0.234 Sum_probs=35.1
Q ss_pred CCEEEEEECCCC----------CCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCH
Q ss_conf 832786411213----------3346981783011220799999997313887489753202
Q gi|254780313|r 94 NNTRVVAIDILD----------MEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAY 145 (227)
Q Consensus 94 ~~~~VigVDl~~----------~~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDmap 145 (227)
.+..|+-+|-+. ++.-++..|++|||.+.+....+... ..+|+|+.=+|-
T Consensus 25 ~d~~v~~~DkLTYAgn~~~l~~~~~~~~~~fv~~DI~D~~~v~~~~~~--~~~D~VvhfAAE 84 (340)
T COG1088 25 PDDHVVNLDKLTYAGNLENLADVEDSPRYRFVQGDICDRELVDRLFKE--YQPDAVVHFAAE 84 (340)
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHH--CCCCEEEEECHH
T ss_conf 975289975233157787888640699715885455479999999974--488759981100
No 291
>TIGR00437 feoB ferrous iron transport protein B; InterPro: IPR003373 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent .; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=48.11 E-value=17 Score=17.35 Aligned_cols=78 Identities=22% Similarity=0.245 Sum_probs=41.4
Q ss_pred CCCCCEEEECCC-CHHH-HHHHHHHHCCCCCCEEEECCCHHHCCCCCCHH---HHHHHHHHHHHHH-------------H
Q ss_conf 469817830112-2079-99999973138874897532021102221015---7889899988987-------------6
Q gi|254780313|r 108 PILGVKFFKFDF-LDLD-SWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDH---LRTMSLCEAATFF-------------A 169 (227)
Q Consensus 108 ~i~gv~~~~gDi-~~~~-~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~---~~~~~L~~~al~~-------------A 169 (227)
.+||+.-++.-= .|+. +++. .+++++|||++ .+|. .|.+.|....+++ |
T Consensus 47 DLPG~YSL~~~S~~dE~v~~dy---l~~e~~DLv~n----------VVDA~nLERnL~LTLQL~E~G~p~i~~LN~~DeA 113 (733)
T TIGR00437 47 DLPGIYSLTTFSGLDEKVARDY---LLNEKPDLVVN----------VVDASNLERNLYLTLQLLELGIPMILALNLVDEA 113 (733)
T ss_pred ECCCCCCCCCCCCCHHHHHHHH---HHCCCCCEEEE----------EECHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 4487300589987427999899---75389967999----------7256677789999999997162585687267899
Q ss_pred H--------HCC-CCCCEEEEEE--ECCCCHHHHHHHHHH
Q ss_conf 4--------114-8774699993--059998999999986
Q gi|254780313|r 170 L--------EML-NIGGDFLVKT--FQGGTTNDILCLLKK 198 (227)
Q Consensus 170 ~--------~~L-k~gG~fV~K~--F~G~~~~~l~~~l~~ 198 (227)
. +-| +-=|.=|+|+ -.|.+.+++...+..
T Consensus 114 ~k~GI~Id~~~Lee~LGvPVv~~~A~~g~G~~~L~~~i~~ 153 (733)
T TIGR00437 114 EKKGIRIDEEKLEERLGVPVVPTSATEGRGIEELKDAIRE 153 (733)
T ss_pred HHCCCEECHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHH
T ss_conf 7729631257775433865256532105778999999999
No 292
>PRK11127 autonomous glycyl radical cofactor GrcA; Provisional
Probab=47.67 E-value=18 Score=17.08 Aligned_cols=67 Identities=15% Similarity=0.179 Sum_probs=47.9
Q ss_pred EEECCCCHHHH---HHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 85045530689---9999706878832786411213334698178301122079999999731388748975
Q gi|254780313|r 73 DLGSSPGSWSQ---VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLS 141 (227)
Q Consensus 73 DLGaaPGgWsQ---va~~~~~~~~~~~~VigVDl~~~~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlS 141 (227)
-+=||.+|+.+ ++....|. ...+-+.|+..|...++|-..++-++.+.++.....+......||++-
T Consensus 30 rci~a~~~y~~dqiv~~s~lg~--~e~re~~~~~~~~~~~~GG~HlqvNVldreTL~dAqk~PE~Yp~L~VR 99 (127)
T PRK11127 30 RCIVAKAGYAEDQVVAVSKLGE--IEYREVPVEVKPEVRVEGGQHLNVNVLRRETLEDAVKHPEKYPQLTIR 99 (127)
T ss_pred EEEEEECCCCCCCEEEHHHHCC--CCCCEEEECCCCCCEECCCCEEEEEECCHHHHHHHHHCHHHCCCCEEE
T ss_conf 7899834634034676244178--534120021477411145547899761789999999697548781999
No 293
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=47.63 E-value=23 Score=16.51 Aligned_cols=83 Identities=16% Similarity=0.145 Sum_probs=49.6
Q ss_pred HHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC--CCC--------CCCCEEEECCCCHHHHHHH
Q ss_conf 986458313796788850455306899999706878832786411213--334--------6981783011220799999
Q gi|254780313|r 58 INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD--MEP--------ILGVKFFKFDFLDLDSWEF 127 (227)
Q Consensus 58 Id~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~--~~~--------i~gv~~~~gDi~~~~~~~~ 127 (227)
+.++|+| .|.++|=.|++-|== .-+++.....|- .|+-.|..+ .+. -..+.++.+|+++++..+.
T Consensus 6 ~~~~~~L--~gK~alITGgs~GIG-~~ia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~ 80 (259)
T PRK06124 6 YLQRFSL--AGQVALVTGSARGLG-LEIARALAEAGA--HVLVNGRNAARVEAAVAALRAAGGAAEALVFDISDEEAVAA 80 (259)
T ss_pred CHHHCCC--CCCEEEEECCCCHHH-HHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHH
T ss_conf 2364099--999899928674899-999999998799--99999698899999999999659958999951799999999
Q ss_pred HHHHCC---CCCCEEEECCCH
Q ss_conf 997313---887489753202
Q gi|254780313|r 128 IRQAIG---GNPDLVLSDMAY 145 (227)
Q Consensus 128 i~~~l~---~~~DlVlSDmap 145 (227)
+.+... ++.|+++.-.+-
T Consensus 81 ~~~~~~~~~g~iDiLVnnAG~ 101 (259)
T PRK06124 81 AFARIDAEHGRLDILVNNVGA 101 (259)
T ss_pred HHHHHHHHCCCCCEEEECCCC
T ss_conf 999999975999799989888
No 294
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=47.21 E-value=23 Score=16.47 Aligned_cols=95 Identities=17% Similarity=0.173 Sum_probs=48.7
Q ss_pred CCCCEEEEEECCCCHHHHH-HHHHHCCCCCCEEEEEECCCCCC----CCCCCEEEECCCCHHHHHHHHHHHC-CCCCCEE
Q ss_conf 3796788850455306899-99970687883278641121333----4698178301122079999999731-3887489
Q gi|254780313|r 66 QSNRRIVDLGSSPGSWSQV-AARITGSNANNTRVVAIDILDME----PILGVKFFKFDFLDLDSWEFIRQAI-GGNPDLV 139 (227)
Q Consensus 66 k~g~~VlDLGaaPGgWsQv-a~~~~~~~~~~~~VigVDl~~~~----~i~gv~~~~gDi~~~~~~~~i~~~l-~~~~DlV 139 (227)
++|++||=+|++|-|=.-+ +++..|. ..|+++|..+-. .--|+...- |-.+.+ .+.+.... +..+|.|
T Consensus 159 ~~g~~vlV~GaG~vGl~aiq~ak~~Ga----~~V~~~d~~~~kl~~a~~lGAd~~i-~~~~~~-~~~~~~~~~~~~~d~v 232 (347)
T PRK10309 159 CEGKNVIIIGAGTIGLLAIQCAVALGA----KSVTAIDINSEKLALAKSLGAMQTF-NSREMS-APQIQSVLRELRFDQL 232 (347)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCC----CEEEEEECCHHHHHHHHHCCCCEEE-CCCCCC-HHHHHHHHCCCCCCEE
T ss_conf 889869998998389999999998599----7699992899999999972998998-688779-9999998629988869
Q ss_pred EECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 7532021102221015788989998898764114877469999
Q gi|254780313|r 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK 182 (227)
Q Consensus 140 lSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K 182 (227)
+-| ++|.. ..++.+...++++|.+++-
T Consensus 233 vid----~~G~~------------~~~~~a~~~~~~~G~iv~~ 259 (347)
T PRK10309 233 ILE----TAGVP------------QTVELAIEIAGPRAQLALV 259 (347)
T ss_pred EEE----CCCCH------------HHHHHHHHHHCCCEEEEEE
T ss_conf 997----99998------------9999999961897499998
No 295
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=47.01 E-value=23 Score=16.45 Aligned_cols=75 Identities=16% Similarity=0.189 Sum_probs=49.3
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCC-CCCCCEEEECCCCHHHHHHHHH----HHCCCCCCEEEE
Q ss_conf 79678885045530689999970687883278641121333-4698178301122079999999----731388748975
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME-PILGVKFFKFDFLDLDSWEFIR----QAIGGNPDLVLS 141 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~-~i~gv~~~~gDi~~~~~~~~i~----~~l~~~~DlVlS 141 (227)
.|.++|=-|++-|==...| +..... +..|+.+|+.+-+ .-.++.+++.|+++++..+.+. +.+ ++.|+++.
T Consensus 8 ~gKvalVTGgs~GIG~aia-~~la~~--Ga~V~~~d~~~~~~~~~~~~~~~~Dvt~~~~v~~~v~~~~~~~-G~iDiLVN 83 (266)
T PRK06171 8 QGKIIIVTGGSSGIGLAIV-EELLAQ--GANVQMVDIHGGDEKHKGYQFWPTDISSAKEVNHTVAEIIERF-GRIDGLVN 83 (266)
T ss_pred CCCEEEEECCCCHHHHHHH-HHHHHC--CCEEEEEECCHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHH-CCCCEEEE
T ss_conf 9997999477878999999-999987--9999999788535058976999816999999999999999983-99889998
Q ss_pred CCCH
Q ss_conf 3202
Q gi|254780313|r 142 DMAY 145 (227)
Q Consensus 142 Dmap 145 (227)
-.+-
T Consensus 84 NAGi 87 (266)
T PRK06171 84 NAGI 87 (266)
T ss_pred CCCC
T ss_conf 8866
No 296
>PRK11430 hypothetical protein; Provisional
Probab=45.33 E-value=25 Score=16.29 Aligned_cols=21 Identities=5% Similarity=0.001 Sum_probs=8.9
Q ss_pred CEEEECCCCHHHHHHHHHHHC
Q ss_conf 178301122079999999731
Q gi|254780313|r 112 VKFFKFDFLDLDSWEFIRQAI 132 (227)
Q Consensus 112 v~~~~gDi~~~~~~~~i~~~l 132 (227)
...+.-|+.+++-++.+.+.+
T Consensus 71 Krsi~ldlk~~~g~~~~~~Lv 91 (381)
T PRK11430 71 KESVVLDLKNDHDKSIFINML 91 (381)
T ss_pred CEEEEEECCCHHHHHHHHHHH
T ss_conf 969987792878889999998
No 297
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=45.01 E-value=25 Score=16.26 Aligned_cols=74 Identities=22% Similarity=0.169 Sum_probs=45.3
Q ss_pred CCCCCEEEEEECCCCHHHH-HHHHHHCCCCCCEEEEEECCCC-----CCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCE
Q ss_conf 1379678885045530689-9999706878832786411213-----334698178301122079999999731388748
Q gi|254780313|r 65 LQSNRRIVDLGSSPGSWSQ-VAARITGSNANNTRVVAIDILD-----MEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDL 138 (227)
Q Consensus 65 ~k~g~~VlDLGaaPGgWsQ-va~~~~~~~~~~~~VigVDl~~-----~~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~Dl 138 (227)
++.-..||=|| --||.- ...+++-.. .++.|.|.|+.. .-.-|+.+|..|||+-. .+.|..+. .++|+
T Consensus 312 ~~~~~~vlilg--vngfig~hl~~~~l~~-~~~~v~g~d~~~~~i~~~~~~p~~~f~~gdi~~~--~~wie~~i-kkcdv 385 (660)
T PRK08125 312 AKRRTRVLILG--VNGFIGNHLTERLLRD-DNYEVYGLDIGSDAISRFLGHPRFHFVEGDISIH--SEWIEYHI-KKCDV 385 (660)
T ss_pred CCCCEEEEEEE--CCCHHHHHHHHHHHCC-CCEEEEEEECCCCHHHHHHCCCCEEEEECCCHHH--HHHHHHHH-HHCCE
T ss_conf 56522799983--4413678999998503-8858998865753455753499548881561466--89999887-54576
Q ss_pred EEECCC
Q ss_conf 975320
Q gi|254780313|r 139 VLSDMA 144 (227)
Q Consensus 139 VlSDma 144 (227)
|+-=.|
T Consensus 386 vlplva 391 (660)
T PRK08125 386 VLPLVA 391 (660)
T ss_pred EEEEHH
T ss_conf 732055
No 298
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=44.35 E-value=25 Score=16.19 Aligned_cols=116 Identities=17% Similarity=0.185 Sum_probs=60.7
Q ss_pred CCCEEEEEECCCCH-HHHHHHHHHCCCCCCEEEEEECCCC---------CCCCCCCEEEECCCCHHHHHHHHHHHCC---
Q ss_conf 79678885045530-6899999706878832786411213---------3346981783011220799999997313---
Q gi|254780313|r 67 SNRRIVDLGSSPGS-WSQVAARITGSNANNTRVVAIDILD---------MEPILGVKFFKFDFLDLDSWEFIRQAIG--- 133 (227)
Q Consensus 67 ~g~~VlDLGaaPGg-WsQva~~~~~~~~~~~~VigVDl~~---------~~~i~gv~~~~gDi~~~~~~~~i~~~l~--- 133 (227)
.|.++|=.|+|-|. ==.-+++.....|- +|+-.|+.+ .+......+++.|+++++..+.+.+...
T Consensus 5 ~GK~alVTGaa~g~GIG~aiA~~la~~Ga--~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 82 (254)
T PRK07533 5 AGKRGLVVGIANEQSIAWGCARAFRALGA--ELAVTYLNDKARPYVEPLAEELDAPLLMPLDVREPGQLEAVFARIAEEW 82 (254)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 99989996888980899999999998799--9999828877899999999745981899916999999999999999984
Q ss_pred CCCCEEEECCC--HH--HCC-CCCCH---HHHHHHHHHH----HHHHHHHCCCCCCEEEEEEE
Q ss_conf 88748975320--21--102-22101---5788989998----89876411487746999930
Q gi|254780313|r 134 GNPDLVLSDMA--YP--TIG-HRKID---HLRTMSLCEA----ATFFALEMLNIGGDFLVKTF 184 (227)
Q Consensus 134 ~~~DlVlSDma--pn--~SG-~~~~D---~~~~~~L~~~----al~~A~~~Lk~gG~fV~K~F 184 (227)
++.|+++.-.+ |. ..+ ..+.+ -.+.++++.. ....+...++.||..+.=.+
T Consensus 83 G~iDilVnna~~~~~~~~~~~~~d~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~gG~iv~iss 145 (254)
T PRK07533 83 GRLDFVLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMSY 145 (254)
T ss_pred CCCCEEEECCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 997789742212660111476014999999999999859999999998888651783156732
No 299
>pfam03492 Methyltransf_7 SAM dependent carboxyl methyltransferase. This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine.
Probab=44.24 E-value=26 Score=16.18 Aligned_cols=29 Identities=31% Similarity=0.468 Sum_probs=20.3
Q ss_pred HHHHC--CCCCCCCEEEEEECCCCHHHHHHH
Q ss_conf 98645--831379678885045530689999
Q gi|254780313|r 58 INEKH--QILQSNRRIVDLGSSPGSWSQVAA 86 (227)
Q Consensus 58 Id~kf--~l~k~g~~VlDLGaaPGgWsQva~ 86 (227)
|.+.| +++.+..+|.||||+-|.=|-.+.
T Consensus 5 i~~l~~~~~~p~~~~IADlGCSsGpNtl~~v 35 (331)
T pfam03492 5 ISELLLRNLFPNSIKIADLGCSSGPNTFLAV 35 (331)
T ss_pred HHHHHHCCCCCCCEEEEEECCCCCHHHHHHH
T ss_conf 9999855789985599981799975289999
No 300
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=43.88 E-value=26 Score=16.15 Aligned_cols=81 Identities=23% Similarity=0.203 Sum_probs=48.1
Q ss_pred HHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC--C----CCC----CCCEEEECCCCHHHHHHHH
Q ss_conf 86458313796788850455306899999706878832786411213--3----346----9817830112207999999
Q gi|254780313|r 59 NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD--M----EPI----LGVKFFKFDFLDLDSWEFI 128 (227)
Q Consensus 59 d~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~--~----~~i----~gv~~~~gDi~~~~~~~~i 128 (227)
++-|+| .|.++|=-|++-|==.. +++.....|- +|+-+|... . +.+ ..+.++++|+++++..+.+
T Consensus 3 ~~lf~L--~gKvalVTGas~GIG~a-ia~~la~~Ga--~V~i~~~~~~~~~~~~~~l~~~g~~~~~~~~Dvtd~~~v~~~ 77 (278)
T PRK08277 3 NNLFSL--KGKVAVITGGGGVLGGA-MAKELARAGA--KVAILDRNQEKAEAVVEEIKANGGEAIALKADVLDKESLEQA 77 (278)
T ss_pred CCCCCC--CCCEEEEECCCCHHHHH-HHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHH
T ss_conf 006388--99989995867489999-9999998799--899997988999999999984599099998248999999999
Q ss_pred HHHCC---CCCCEEEECCC
Q ss_conf 97313---88748975320
Q gi|254780313|r 129 RQAIG---GNPDLVLSDMA 144 (227)
Q Consensus 129 ~~~l~---~~~DlVlSDma 144 (227)
.+... ++.|+++.-.+
T Consensus 78 ~~~~~~~~G~iDiLVNnAG 96 (278)
T PRK08277 78 RQQILKDFGRCDILINGAG 96 (278)
T ss_pred HHHHHHHHCCCCEEEECCC
T ss_conf 9999998499888998898
No 301
>PRK07825 short chain dehydrogenase; Provisional
Probab=43.54 E-value=26 Score=16.12 Aligned_cols=80 Identities=19% Similarity=0.186 Sum_probs=48.7
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC------CCCCCCCEEEECCCCHHHHHHHHHHHCC---CCCC
Q ss_conf 796788850455306899999706878832786411213------3346981783011220799999997313---8874
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD------MEPILGVKFFKFDFLDLDSWEFIRQAIG---GNPD 137 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~------~~~i~gv~~~~gDi~~~~~~~~i~~~l~---~~~D 137 (227)
.|.+||=-|++-| -=.-+++.....|. +|+..|+.. .+.+..+..++.|+++++..+.+.+... |.+|
T Consensus 4 ~gKvvlITGassG-IG~a~A~~la~~Ga--~V~i~~r~~~~l~~~~~~~~~~~~~~~DVtd~~~v~~~~~~~~~~~G~iD 80 (273)
T PRK07825 4 RGKVIAITGGARG-IGLATARALAALGA--KVAIGDLDEALAKESAAELGLVVGGPLDVTDPASFAAFLDAVEADLGPID 80 (273)
T ss_pred CCCEEEEECCCCH-HHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 9988999262339-99999999998799--89999799999999998607855999147999999999999999709977
Q ss_pred EEEECCCHHHCC
Q ss_conf 897532021102
Q gi|254780313|r 138 LVLSDMAYPTIG 149 (227)
Q Consensus 138 lVlSDmapn~SG 149 (227)
+++.-.+....|
T Consensus 81 iLVNNAGi~~~~ 92 (273)
T PRK07825 81 VLVNNAGIMPVG 92 (273)
T ss_pred EEEECCCCCCCC
T ss_conf 899878778998
No 302
>PRK08671 methionine aminopeptidase; Provisional
Probab=42.89 E-value=27 Score=16.05 Aligned_cols=30 Identities=7% Similarity=0.176 Sum_probs=19.7
Q ss_pred HHHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf 99881844799999999986458313796788850
Q gi|254780313|r 41 RAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLG 75 (227)
Q Consensus 41 ~Ak~~gyrsRaafKL~eId~kf~l~k~g~~VlDLG 75 (227)
+-++.|-.++.+.+.+. .+++||.+++|||
T Consensus 4 kyr~Ag~I~~~vl~~~~-----~~~kpG~t~~el~ 33 (293)
T PRK08671 4 KYREAGKIASKVREEAA-----KLIKPGASLLEVA 33 (293)
T ss_pred HHHHHHHHHHHHHHHHH-----HHCCCCCCHHHHH
T ss_conf 99999999999999999-----7676999099999
No 303
>cd01088 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=42.81 E-value=27 Score=16.05 Aligned_cols=113 Identities=13% Similarity=0.092 Sum_probs=46.9
Q ss_pred HHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCC---CEEEEEECCC--CCCCCC--CCEEEE
Q ss_conf 818447999999999864583137967888504553068999997068788---3278641121--333469--817830
Q gi|254780313|r 44 LEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN---NTRVVAIDIL--DMEPIL--GVKFFK 116 (227)
Q Consensus 44 ~~gyrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~---~~~VigVDl~--~~~~i~--gv~~~~ 116 (227)
+.|=.++.+.+... .+++||.+++|||. .+-+.+...+. -+.-++|.=. .--|.+ ...+-.
T Consensus 6 ~Ag~i~~~vl~~~~-----~~~kpG~s~~el~~-------~~e~~i~~~~a~~aFP~~iSvN~~v~H~~P~~~d~~~lk~ 73 (291)
T cd01088 6 EAGEIHRQVRKYAQ-----SLIKPGMTLLEIAE-------FVENRIRELGAGPAFPVNLSINECAAHYTPNAGDDTVLKE 73 (291)
T ss_pred HHHHHHHHHHHHHH-----HHCCCCCCHHHHHH-------HHHHHHHHCCCCCCCCCEECCCCEEECCCCCCCCCEEECC
T ss_conf 99999999999999-----66769995999999-------9999999859806778622454677568899887546337
Q ss_pred CCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCE
Q ss_conf 11220799999997313887489753202110222101578898999889876411487746
Q gi|254780313|r 117 FDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD 178 (227)
Q Consensus 117 gDi~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~ 178 (227)
||+.+.+ ++-..|=.++|.|.-+. . .-.....++-+..||..|.+.++||..
T Consensus 74 GDiVkiD--------~G~~idG~~~D~A~Tv~-v-~~~~~~Li~aa~~al~~ai~~~kpG~~ 125 (291)
T cd01088 74 GDVVKLD--------FGAHVDGYIADSAFTVD-F-DPKYDDLLEAAKEALNAAIKEAGPDVR 125 (291)
T ss_pred CCEEEEE--------EEEEECCEEEEEEEEEE-C-CCCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 9989986--------65787788868889996-3-831778999999999999998538989
No 304
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=42.75 E-value=12 Score=18.23 Aligned_cols=38 Identities=18% Similarity=0.337 Sum_probs=31.0
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEE-EECCCC
Q ss_conf 999998818447999999999864583137967888-504553
Q gi|254780313|r 38 YVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVD-LGSSPG 79 (227)
Q Consensus 38 y~~~Ak~~gyrsRaafKL~eId~kf~l~k~g~~VlD-LGaaPG 79 (227)
.+=+++-+|| |-|-.|+.+-+||++ |--+.+| -||.||
T Consensus 131 NFGm~~PeGY--RKAlRlm~lAekf~~--Pvit~IDTpGAypG 169 (322)
T CHL00198 131 NFGMPSPGGY--RKALRLMEHANRFGL--PILTFIDTPGAWAG 169 (322)
T ss_pred CCCCCCHHHH--HHHHHHHHHHHHCCC--CEEEEECCCCCCCC
T ss_conf 1899985999--999999999997099--77998328986788
No 305
>PRK06128 oxidoreductase; Provisional
Probab=42.44 E-value=27 Score=16.01 Aligned_cols=111 Identities=14% Similarity=0.066 Sum_probs=58.2
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC----C-------CC-CCCCEEEECCCCHHHHHHHHH----H
Q ss_conf 796788850455306899999706878832786411213----3-------34-698178301122079999999----7
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD----M-------EP-ILGVKFFKFDFLDLDSWEFIR----Q 130 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~----~-------~~-i~gv~~~~gDi~~~~~~~~i~----~ 130 (227)
.|.++|=-|++-|== .-++......|- .|+-.|+.. . +. -..+..+.+|+.+++..+.+. +
T Consensus 54 ~GKvAlVTGgssGIG-~AiA~~lA~eGA--~Vvi~~~~~~~~~a~~~~~~i~~~G~~a~~v~~Dvsd~~~~~~~v~~~~~ 130 (300)
T PRK06128 54 QGRKALITGADSGIG-RATAIAFAREGA--DIVLNYLPEEEQDAAEVVQLIQAEGRKAVAVPGDLKDEAFCRQLVERAVK 130 (300)
T ss_pred CCCEEEEECCCCHHH-HHHHHHHHHCCC--EEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 999589917366999-999999998699--99994299556789999999996598189997478999999999999999
Q ss_pred HCCCCCCEEEECCCHHHC--CCCCCHH---HHHHHHHHHH----HHHHHHCCCCCCEEEE
Q ss_conf 313887489753202110--2221015---7889899988----9876411487746999
Q gi|254780313|r 131 AIGGNPDLVLSDMAYPTI--GHRKIDH---LRTMSLCEAA----TFFALEMLNIGGDFLV 181 (227)
Q Consensus 131 ~l~~~~DlVlSDmapn~S--G~~~~D~---~~~~~L~~~a----l~~A~~~Lk~gG~fV~ 181 (227)
.+ ++.|+++.-.+.... ...+++. .+.++++... ...++..|++||..|.
T Consensus 131 ~~-G~iDiLVNNAG~~~~~~~~~~~~~e~w~~~~~vNl~g~f~~~~aa~p~m~~gGsIIn 189 (300)
T PRK06128 131 EL-GGLDILVNIAGKQTARKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIIN 189 (300)
T ss_pred HH-CCCCEEEECCCCCCCCCCHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 80-999989989999778999177999999999866115899999999998753871478
No 306
>PRK06914 short chain dehydrogenase; Provisional
Probab=42.43 E-value=27 Score=16.01 Aligned_cols=110 Identities=15% Similarity=0.130 Sum_probs=58.4
Q ss_pred CCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC------------CCCCCCCEEEECCCCHHHHHHHHHHHCC--
Q ss_conf 96788850455306899999706878832786411213------------3346981783011220799999997313--
Q gi|254780313|r 68 NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD------------MEPILGVKFFKFDFLDLDSWEFIRQAIG-- 133 (227)
Q Consensus 68 g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~------------~~~i~gv~~~~gDi~~~~~~~~i~~~l~-- 133 (227)
+.++|=-||+-|==-..| ......| .+|++.+..+ ..+-.++..++.|+++.+..+.+.+.+.
T Consensus 3 ~K~alITGassGIG~a~A-~~la~~G--~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~~~ 79 (280)
T PRK06914 3 KKIAIITGASSGFGLLTT-LELAKKD--YLVIATMRNLEKQENLISQAAQLNLSQNIKVQQLDVTDQNSIHNFQLFLKEY 79 (280)
T ss_pred CCEEEEECCCCHHHHHHH-HHHHHCC--CEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 198999073449999999-9999879--9899998988999999999996499976699968899999999999999982
Q ss_pred CCCCEEEECCCHHHCCCC-C---CHHHHHHHHHHHHHH----HHHHCCC--CCCEEE
Q ss_conf 887489753202110222-1---015788989998898----7641148--774699
Q gi|254780313|r 134 GNPDLVLSDMAYPTIGHR-K---IDHLRTMSLCEAATF----FALEMLN--IGGDFL 180 (227)
Q Consensus 134 ~~~DlVlSDmapn~SG~~-~---~D~~~~~~L~~~al~----~A~~~Lk--~gG~fV 180 (227)
+++|+++.-.+....|.- + -|..+.++.+..... .++..++ .+|..|
T Consensus 80 g~iDvLVNNAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~lp~m~~~~~G~Iv 136 (280)
T PRK06914 80 GRIDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQKSGKII 136 (280)
T ss_pred CCCCEEEECCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 998789978866778742117799999999871289998999997877756995899
No 307
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=42.13 E-value=28 Score=15.98 Aligned_cols=148 Identities=18% Similarity=0.164 Sum_probs=79.5
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC----CCCC-----CCEEEECCCCHHHHHHHHHHHCCC--
Q ss_conf 37967888504553068999997068788327864112133----3469-----817830112207999999973138--
Q gi|254780313|r 66 QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM----EPIL-----GVKFFKFDFLDLDSWEFIRQAIGG-- 134 (227)
Q Consensus 66 k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~----~~i~-----gv~~~~gDi~~~~~~~~i~~~l~~-- 134 (227)
.++.++|=-||+-|==-++| +....+|.+-.++|=+-... +.+. .|.++..|+.+++....+...+..
T Consensus 4 ~~~~~~lITGASsGIG~~~A-~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~~ 82 (265)
T COG0300 4 MKGKTALITGASSGIGAELA-KQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKERG 82 (265)
T ss_pred CCCCEEEEECCCCHHHHHHH-HHHHHCCCEEEEEECCHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHCC
T ss_conf 77867999778864899999-99997799799996769999999999987308627999776788367999999998248
Q ss_pred -CCCEEEECCCHHHCCC----CCCHHHHHHHHHHHHHHHH-----HHCCCCCCEEEEEE-----EC--------------
Q ss_conf -8748975320211022----2101578898999889876-----41148774699993-----05--------------
Q gi|254780313|r 135 -NPDLVLSDMAYPTIGH----RKIDHLRTMSLCEAATFFA-----LEMLNIGGDFLVKT-----FQ-------------- 185 (227)
Q Consensus 135 -~~DlVlSDmapn~SG~----~~~D~~~~~~L~~~al~~A-----~~~Lk~gG~fV~K~-----F~-------------- 185 (227)
.+|+.+--.+.-..|. ...+...+++|+..++... ..+.+.|+--|+=+ |.
T Consensus 83 ~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~~G~IiNI~S~ag~~p~p~~avY~ATKa~ 162 (265)
T COG0300 83 GPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERGAGHIINIGSAAGLIPTPYMAVYSATKAF 162 (265)
T ss_pred CCCCEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHCCCCCCHHHHHHHHHH
T ss_conf 85238997787477665421885899999999999999999999999986589669998434532888632799999999
Q ss_pred -CCCHHHHHHHHHHHCCEEEEECCCCCCCC
Q ss_conf -99989999999862584699768665755
Q gi|254780313|r 186 -GGTTNDILCLLKKHFQKVIHVKPVASRAE 214 (227)
Q Consensus 186 -G~~~~~l~~~l~~~F~~V~~~KP~aSR~~ 214 (227)
-.-++.|...++..=-.|..+=|-..|.+
T Consensus 163 v~~fSeaL~~EL~~~gV~V~~v~PG~~~T~ 192 (265)
T COG0300 163 VLSFSEALREELKGTGVKVTAVCPGPTRTE 192 (265)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEECCCCCCC
T ss_conf 999999999983589849999965733355
No 308
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=41.57 E-value=28 Score=15.92 Aligned_cols=179 Identities=18% Similarity=0.220 Sum_probs=99.3
Q ss_pred HHHHHCCCHHHHH--HHHHCCHHHHHHHHHHHHHHC--CCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCC
Q ss_conf 9996408999999--988184479999999998645--831379678885045530689999970687883278641121
Q gi|254780313|r 29 WLNRHINDPYVQR--AQLEGWRARSAYKLLQINEKH--QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL 104 (227)
Q Consensus 29 W~~r~~~D~y~~~--Ak~~gyrsRaafKL~eId~kf--~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~ 104 (227)
|+-..+-...+-+ .-.|=|..|+-..+++-...- ..+.++..+|||||+-+--+....+.... ..+-++||+.
T Consensus 21 ~~YD~~Gs~LFe~It~lpEYY~tr~E~~IL~~~~~~Ia~~~~~~~~lIElGsG~~~Kt~~LL~al~~---~~~Y~plDIS 97 (301)
T TIGR03438 21 YFYDARGSELFEQICELPEYYPTRTEAAILERHADEIAAATGAGCELVELGSGSSRKTRLLLDALRQ---PARYVPIDIS 97 (301)
T ss_pred HCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHC---CCEEEEEECC
T ss_conf 5015627799999977986687168999999889999986276764773178862378999998621---5638877568
Q ss_pred C---------C-CCCCC--CEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 3---------3-34698--1783011220799999997313887489753202110222101578898999889876411
Q gi|254780313|r 105 D---------M-EPILG--VKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEM 172 (227)
Q Consensus 105 ~---------~-~~i~g--v~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~ 172 (227)
. + ...|+ |.-+.||+++.-. .. .......-+++.=+ ++-||-+.+++..+ |.-....
T Consensus 98 ~~~L~~s~~~l~~~~p~l~v~~v~~dy~~~l~--~~-~~~~~~~rl~~flG--SsIGNf~~~ea~~f------L~~~~~~ 166 (301)
T TIGR03438 98 ADALKESAAALAADYPQLEVHGICADFTQPLA--LP-PEPAAGRRLGFFPG--STIGNFTPEEAVAF------LRRIRQL 166 (301)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEEECHHCHHH--CC-CCCCCCCCEEEECC--CCCCCCCHHHHHHH------HHHHHHH
T ss_conf 99999999999977899768999633315744--56-65578875899707--54478998999999------9999997
Q ss_pred CCCCCEEEEEE------------EC---C--CCHH-HHHHHHH---------HHCCEEEEECCCCCCCCCCEEEEEECC
Q ss_conf 48774699993------------05---9--9989-9999998---------625846997686657558249898307
Q gi|254780313|r 173 LNIGGDFLVKT------------FQ---G--GTTN-DILCLLK---------KHFQKVIHVKPVASRAESVEMFLLAKG 224 (227)
Q Consensus 173 Lk~gG~fV~K~------------F~---G--~~~~-~l~~~l~---------~~F~~V~~~KP~aSR~~S~E~Ylv~~g 224 (227)
|.+|+.|++=+ ++ | ..|+ .++..+. ..|+.+-.+-|..+|-+ +|++.+.
T Consensus 167 l~~~d~lLiG~Dl~Kd~~~l~~AYnD~~GvTa~FnlN~L~~iNr~Lg~dF~~~~f~h~a~yn~~~~rie---m~L~s~~ 242 (301)
T TIGR03438 167 LGPGGGLLIGVDLVKDPAVLEAAYNDAAGVTAAFNLNLLRRLNRELGGDFDPDAFRHRAFYNEERSRIE---MHLVSRR 242 (301)
T ss_pred HCCCCEEEEEECCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHCEEEEEECCCCCEEE---EEEEECC
T ss_conf 199984899404456989999873296442478999799999998477857655679999868778799---9998168
No 309
>pfam00107 ADH_zinc_N Zinc-binding dehydrogenase.
Probab=41.45 E-value=28 Score=15.91 Aligned_cols=72 Identities=32% Similarity=0.468 Sum_probs=41.9
Q ss_pred EEEEEECCCCC----CCCCCCEEEECCCCHHHHHHHHHHHCCC-CCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 27864112133----3469817830112207999999973138-874897532021102221015788989998898764
Q gi|254780313|r 96 TRVVAIDILDM----EPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFAL 170 (227)
Q Consensus 96 ~~VigVDl~~~----~~i~gv~~~~gDi~~~~~~~~i~~~l~~-~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~ 170 (227)
.+|+++|..+- ..--|+..+ -|..+.+..+.+....++ .+|+|+- ++|.. ..+..+.
T Consensus 16 ~~Vi~~~~~~~r~~~a~~lGa~~~-i~~~~~~~~~~i~~~~~~~g~d~vid-----~~g~~------------~~~~~~~ 77 (131)
T pfam00107 16 ARVIAVDRSEEKLELAKELGADHV-INYRDEDFVERVRELTGGRGVDVVID-----CVGAP------------ATLEQAL 77 (131)
T ss_pred CEEEEEECCHHHHHHHHHCCCCCC-CCCCCCCHHHHHHHCCCCCCCEEEEE-----CCCCH------------HHHHHHH
T ss_conf 879999698899999997599732-35332212455654049977649886-----68866------------6799998
Q ss_pred HCCCCCCEEEEEEEC
Q ss_conf 114877469999305
Q gi|254780313|r 171 EMLNIGGDFLVKTFQ 185 (227)
Q Consensus 171 ~~Lk~gG~fV~K~F~ 185 (227)
.+++++|++++=-.-
T Consensus 78 ~~~~~~G~iv~~G~~ 92 (131)
T pfam00107 78 ELLRPGGRVVVVGLP 92 (131)
T ss_pred HHHCCCCEEEEEECC
T ss_conf 753599789999467
No 310
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=41.09 E-value=29 Score=15.88 Aligned_cols=86 Identities=22% Similarity=0.227 Sum_probs=47.3
Q ss_pred HHHHHCCCCCCEEEEEECCCC--CCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHH
Q ss_conf 999706878832786411213--334698178301122079999999731388748975320211022210157889899
Q gi|254780313|r 85 AARITGSNANNTRVVAIDILD--MEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLC 162 (227)
Q Consensus 85 a~~~~~~~~~~~~VigVDl~~--~~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~ 162 (227)
+.+..-..|+ .|.+|--.+ +...+++..++.||++++... +.+.+ +|+|+|--.+-.+++ +..|..+++..
T Consensus 16 i~~EA~~RGH--eVTAivRn~~K~~~~~~~~i~q~Difd~~~~a---~~l~g-~DaVIsA~~~~~~~~-~~~~~k~~~~l 88 (211)
T COG2910 16 ILKEALKRGH--EVTAIVRNASKLAARQGVTILQKDIFDLTSLA---SDLAG-HDAVISAFGAGASDN-DELHSKSIEAL 88 (211)
T ss_pred HHHHHHHCCC--EEEEEEECHHHCCCCCCCEEECCCCCCHHHHH---HHHCC-CCEEEEECCCCCCCH-HHHHHHHHHHH
T ss_conf 9999986798--04899807676652235302000222745667---66358-766997215788871-57788899999
Q ss_pred HHHHHHH--HHCCCCCC
Q ss_conf 9889876--41148774
Q gi|254780313|r 163 EAATFFA--LEMLNIGG 177 (227)
Q Consensus 163 ~~al~~A--~~~Lk~gG 177 (227)
..++.=+ .++|--||
T Consensus 89 i~~l~~agv~RllVVGG 105 (211)
T COG2910 89 IEALKGAGVPRLLVVGG 105 (211)
T ss_pred HHHHHHCCCEEEEEECC
T ss_conf 99986159705999847
No 311
>COG4022 Uncharacterized protein conserved in archaea [Function unknown]
Probab=40.86 E-value=29 Score=15.86 Aligned_cols=59 Identities=14% Similarity=0.097 Sum_probs=41.3
Q ss_pred EEECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 8301122079999999731388748975320211022210157889899988987641148
Q gi|254780313|r 114 FFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLN 174 (227)
Q Consensus 114 ~~~gDi~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk 174 (227)
++.--+.+.++-+.+++..++..|+++- |..+||....+.+...+-+..+..+|-+.++
T Consensus 170 kvAVTvada~~Ak~lR~le~~~l~llv~--aVH~TGi~~eeaq~l~~~~DiVT~CASK~iR 228 (286)
T COG4022 170 KVAVTVADAETAKRLRKLEADELDLLVI--AVHVTGIDEEEAQGLVENSDIVTSCASKYIR 228 (286)
T ss_pred EEEEEECCHHHHHHHHHHHCCCCEEEEE--EEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 4899954878799999864676418999--9984366837777787630287772279999
No 312
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=40.76 E-value=29 Score=15.85 Aligned_cols=128 Identities=16% Similarity=0.177 Sum_probs=62.9
Q ss_pred CHHHHHHHHHHHHHHCCCCC--C--CCEEEEEECCCCHHH--H--HHHHHHCC-CCCCEEEEEECCCCC---------CC
Q ss_conf 44799999999986458313--7--967888504553068--9--99997068-788327864112133---------34
Q gi|254780313|r 47 WRARSAYKLLQINEKHQILQ--S--NRRIVDLGSSPGSWS--Q--VAARITGS-NANNTRVVAIDILDM---------EP 108 (227)
Q Consensus 47 yrsRaafKL~eId~kf~l~k--~--g~~VlDLGaaPGgWs--Q--va~~~~~~-~~~~~~VigVDl~~~---------~~ 108 (227)
+|.+..|..++=.-.-.|++ + --+|.-.||+-|-=. - .+.+..+. .+....|+|.||..- -|
T Consensus 72 FR~~~~f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~ 151 (268)
T COG1352 72 FRDPEHFEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYP 151 (268)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHCCCCC
T ss_conf 06908999999998799873046985399966768995589999999987332258743899997999999998628887
Q ss_pred ----CCCC-------EEEEC-CC-C--HHHHHHHH--------HHH-CCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHH
Q ss_conf ----6981-------78301-12-2--07999999--------973-138874897532021102221015788989998
Q gi|254780313|r 109 ----ILGV-------KFFKF-DF-L--DLDSWEFI--------RQA-IGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEA 164 (227)
Q Consensus 109 ----i~gv-------~~~~g-Di-~--~~~~~~~i--------~~~-l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~ 164 (227)
..|+ .|.++ |= . .++....+ .+. +.+++|+|.|= |+-- ..|...+.++
T Consensus 152 ~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCR---NVLI--YFd~~~q~~i--- 223 (268)
T COG1352 152 SRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCR---NVLI--YFDEETQERI--- 223 (268)
T ss_pred HHHHHCCCCHHHHHHHEEECCCCCEEECHHHHCCCEEEECCCCCCCCCCCCCCEEEEC---CEEE--EECHHHHHHH---
T ss_conf 6676544998999633764699847987687624377535788875435898889984---1488--6378999999---
Q ss_pred HHHHHHHCCCCCCEEEEEE
Q ss_conf 8987641148774699993
Q gi|254780313|r 165 ATFFALEMLNIGGDFLVKT 183 (227)
Q Consensus 165 al~~A~~~Lk~gG~fV~K~ 183 (227)
+..-...|++||.+++=.
T Consensus 224 -l~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 224 -LRRFADSLKPGGLLFLGH 241 (268)
T ss_pred -HHHHHHHHCCCCEEEECC
T ss_conf -999999748997899826
No 313
>pfam06859 Bin3 Bicoid-interacting protein 3 (Bin3). This family represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation. Note that family members contain a conserved HLN motif.
Probab=40.60 E-value=29 Score=15.83 Aligned_cols=19 Identities=16% Similarity=0.186 Sum_probs=13.8
Q ss_pred HHHHHHHCCCCCCEEEEEE
Q ss_conf 8987641148774699993
Q gi|254780313|r 165 ATFFALEMLNIGGDFLVKT 183 (227)
Q Consensus 165 al~~A~~~Lk~gG~fV~K~ 183 (227)
.+.-....|+|||.||+.-
T Consensus 26 ~f~~~~~~l~pgg~lilEp 44 (110)
T pfam06859 26 FFRRIYRLLRPGGILILEP 44 (110)
T ss_pred HHHHHHHHHCCCCEEEEEC
T ss_conf 9999999618898899967
No 314
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=40.33 E-value=29 Score=15.81 Aligned_cols=29 Identities=14% Similarity=0.063 Sum_probs=12.0
Q ss_pred CCEEEECCCCHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf 817830112207999999973138874897532
Q gi|254780313|r 111 GVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDM 143 (227)
Q Consensus 111 gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDm 143 (227)
++.+++||+++.+..... +. .+|+|++=+
T Consensus 44 ~~~~~~gDl~d~~~~~~~---~~-~~d~ViH~A 72 (328)
T TIGR03466 44 DVEIVEGDLRDPASLRKA---LA-GCRALFHVA 72 (328)
T ss_pred CCEEEEEECCCHHHHHHH---HH-CCCEEEEEC
T ss_conf 977998207999999999---71-785897613
No 315
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB; InterPro: IPR011879 PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself . It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0000160 two-component signal transduction system (phosphorelay), 0006817 phosphate transport.
Probab=39.84 E-value=17 Score=17.21 Aligned_cols=73 Identities=26% Similarity=0.417 Sum_probs=42.3
Q ss_pred HHHHHHHHHCCCCCCEEEEC-CCHHHCCCCCCHHHHHHHHHHHH--HHHH--------HHCCCCCC-EEEEEEECCCCHH
Q ss_conf 99999997313887489753-20211022210157889899988--9876--------41148774-6999930599989
Q gi|254780313|r 123 DSWEFIRQAIGGNPDLVLSD-MAYPTIGHRKIDHLRTMSLCEAA--TFFA--------LEMLNIGG-DFLVKTFQGGTTN 190 (227)
Q Consensus 123 ~~~~~i~~~l~~~~DlVlSD-mapn~SG~~~~D~~~~~~L~~~a--l~~A--------~~~Lk~gG-~fV~K~F~G~~~~ 190 (227)
+++..|.+ ..+||||=| |-|-+||+.-.-+.+.-+....+ +.+. ..-|..|. -.|+|=|- -.
T Consensus 37 ~A~~~~~E---~~PDLILLDWMLPG~SGIel~R~Lr~~~~Tr~iPIIMLTARGeE~Drv~GLetGADDYvtKPFS---p~ 110 (226)
T TIGR02154 37 EALTLINE---RLPDLILLDWMLPGTSGIELARRLRREPETRAIPIIMLTARGEEEDRVRGLETGADDYVTKPFS---PR 110 (226)
T ss_pred HHHHHHHC---CCCCEEEECCCCCCCCHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCC---HH
T ss_conf 99999860---7998899614789975699998734763314888177405556000113113688750367886---58
Q ss_pred HHHHHHHHHCC
Q ss_conf 99999986258
Q gi|254780313|r 191 DILCLLKKHFQ 201 (227)
Q Consensus 191 ~l~~~l~~~F~ 201 (227)
+|++.++....
T Consensus 111 EL~ARikAVLR 121 (226)
T TIGR02154 111 ELLARIKAVLR 121 (226)
T ss_pred HHHHHHHHHHH
T ss_conf 89999999983
No 316
>PRK06182 short chain dehydrogenase; Validated
Probab=39.78 E-value=30 Score=15.75 Aligned_cols=145 Identities=17% Similarity=0.224 Sum_probs=72.3
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCC--CCCC--CCCCEEEECCCCHHHHHHHHHHHC---CCCCCEE
Q ss_conf 79678885045530689999970687883278641121--3334--698178301122079999999731---3887489
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL--DMEP--ILGVKFFKFDFLDLDSWEFIRQAI---GGNPDLV 139 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~--~~~~--i~gv~~~~gDi~~~~~~~~i~~~l---~~~~DlV 139 (227)
++.++|=-||+-| -=.-+++.....| .+|++++.. ..+. -.++..++.|+++++..+.+.+.+ -++.|++
T Consensus 2 k~Kv~lITGassG-IG~a~a~~la~~G--~~V~~~~r~~~~l~~l~~~~~~~~~~Dvt~~~~v~~~~~~i~~~~g~iDiL 78 (273)
T PRK06182 2 KKKVALVTGASSG-IGKATARKLIAEG--FTVYGAARRVDKMEDLASLGIHPLALDVTDEASMKAAVATILAEEGRIDVL 78 (273)
T ss_pred CCCEEEEECCCHH-HHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCEE
T ss_conf 4698999063209-9999999999879--989999798999999996799799985899999999999999983998877
Q ss_pred EECCCHHHCCC-CCC---HHHHHHHHHHHHH----HHHHHCCC--CCCEEEEE------E---ECC----------CCHH
Q ss_conf 75320211022-210---1578898999889----87641148--77469999------3---059----------9989
Q gi|254780313|r 140 LSDMAYPTIGH-RKI---DHLRTMSLCEAAT----FFALEMLN--IGGDFLVK------T---FQG----------GTTN 190 (227)
Q Consensus 140 lSDmapn~SG~-~~~---D~~~~~~L~~~al----~~A~~~Lk--~gG~fV~K------~---F~G----------~~~~ 190 (227)
+.-.+....|. .+. |-...++++.... ..++..++ .+|..|.= + +.+ .-++
T Consensus 79 VNNAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~lp~m~~~~~G~IvnisS~ag~~~~p~~~~Y~asK~av~~~t~ 158 (273)
T PRK06182 79 VNNAGYGSYGAIEDVPIDEARAQFEVNLFGAARLTQLVLPHMRAQRSGRIINITSMGGKIYTPLGAWYHATKFALEGLSD 158 (273)
T ss_pred EECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 50586777874887319999999998869999999985334214899589998684440779997579999999999999
Q ss_pred HHHHHHHHHCCEEEEECCCCCCCC
Q ss_conf 999999862584699768665755
Q gi|254780313|r 191 DILCLLKKHFQKVIHVKPVASRAE 214 (227)
Q Consensus 191 ~l~~~l~~~F~~V~~~KP~aSR~~ 214 (227)
.|...+..+=-.|..+-|-.-+.+
T Consensus 159 ~La~El~~~gI~V~~v~PG~v~T~ 182 (273)
T PRK06182 159 ALRLEVAPFGIDVVVIEPGGIKTE 182 (273)
T ss_pred HHHHHHCHHCCEEEEEECCCCCCC
T ss_conf 999984403878999973898688
No 317
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=39.40 E-value=30 Score=15.72 Aligned_cols=111 Identities=13% Similarity=0.221 Sum_probs=61.1
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCC--------CCCCEEEECCCCHHHHHHHHHHHCC---CC
Q ss_conf 796788850455306899999706878832786411213334--------6981783011220799999997313---88
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP--------ILGVKFFKFDFLDLDSWEFIRQAIG---GN 135 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~--------i~gv~~~~gDi~~~~~~~~i~~~l~---~~ 135 (227)
.|.++|=-|++-|==...+..+. ..| ..|+.+|....+. -..+.++++|+++++..+.+.+..- ++
T Consensus 7 ~gKvalVTGas~GIG~aia~~la-~~G--a~Vv~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~ 83 (251)
T PRK12481 7 NGKVAIITGCNTGLGQGMAIGLA-KAG--ADIVGVGVAEAPETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEVMGH 83 (251)
T ss_pred CCCEEEEECCCCHHHHHHHHHHH-HCC--CEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCC
T ss_conf 99989994867689999999999-869--999997898719999999975994799991279999999999999998199
Q ss_pred CCEEEECCCHHHCC-CC---CCHHHHHHHHHHHHHH-----HHHHCCCC--CCEEE
Q ss_conf 74897532021102-22---1015788989998898-----76411487--74699
Q gi|254780313|r 136 PDLVLSDMAYPTIG-HR---KIDHLRTMSLCEAATF-----FALEMLNI--GGDFL 180 (227)
Q Consensus 136 ~DlVlSDmapn~SG-~~---~~D~~~~~~L~~~al~-----~A~~~Lk~--gG~fV 180 (227)
.|+++.-.+....+ .. ..|-...++++..... ++..++++ +|..|
T Consensus 84 iDilVNNAG~~~~~~~~~~~~~~w~~~~~vNl~~~~~~~q~~~~~m~~~~~~G~IV 139 (251)
T PRK12481 84 IDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKII 139 (251)
T ss_pred CCEEEECCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 98999899899999903499999999999983779999999999999856993487
No 318
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=39.03 E-value=31 Score=15.68 Aligned_cols=112 Identities=13% Similarity=0.073 Sum_probs=59.4
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CCCCCCCEEEECCCCHHHHHHHHHHHC---CC
Q ss_conf 796788850455306899999706878832786411213---------334698178301122079999999731---38
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------MEPILGVKFFKFDFLDLDSWEFIRQAI---GG 134 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~~i~gv~~~~gDi~~~~~~~~i~~~l---~~ 134 (227)
.|.++|=.|++-| -=.-+++.....|. .|+.+|..+ +....++.++.+|+.+++..+.+.+.. -+
T Consensus 4 ~gK~~lVTGas~G-IG~aiA~~la~~Ga--~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~Dvs~~~~v~~~~~~~~~~~g 80 (238)
T PRK05786 4 KGKNVLIVGVSPG-LGYAVAYFALREGA--SVYAFARSEEKLKEIKKTLAKYGNVIYVVGDVSKLEGAREAAEKAAKVFG 80 (238)
T ss_pred CCCEEEEECCCCH-HHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHC
T ss_conf 9988999289878-99999999998799--99999698899999999874359779997578999999999999999839
Q ss_pred CCCEEEECCCHHHCCCC-CC-HHHHHHHHHH----HHHHHHHHCCCCCCEEEE
Q ss_conf 87489753202110222-10-1578898999----889876411487746999
Q gi|254780313|r 135 NPDLVLSDMAYPTIGHR-KI-DHLRTMSLCE----AATFFALEMLNIGGDFLV 181 (227)
Q Consensus 135 ~~DlVlSDmapn~SG~~-~~-D~~~~~~L~~----~al~~A~~~Lk~gG~fV~ 181 (227)
..|.++.-.+....... +. +....++.+. .+...+...+++||..|.
T Consensus 81 ~iD~lv~naG~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~g~~ii~ 133 (238)
T PRK05786 81 ALHGLVVTAGGYIEDTVEELAGLEDMLNNHLKAPLYAVNASLPLLREGSSIVL 133 (238)
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE
T ss_conf 98879980575678852318999999999858999999999997421677999
No 319
>pfam05404 TRAP-delta Translocon-associated protein, delta subunit precursor (TRAP-delta). This family consists of several eukaryotic translocon-associated protein, delta subunit precursors (TRAP-delta or SSR-delta). The exact function of this protein is unknown.
Probab=38.46 E-value=26 Score=16.15 Aligned_cols=38 Identities=18% Similarity=0.197 Sum_probs=26.3
Q ss_pred CCCCCEEEEEEECCCCHHHHHHHHHHHCCEEEEECCCCC
Q ss_conf 487746999930599989999999862584699768665
Q gi|254780313|r 173 LNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVAS 211 (227)
Q Consensus 173 Lk~gG~fV~K~F~G~~~~~l~~~l~~~F~~V~~~KP~aS 211 (227)
-...|++.+|+|+-+.+..+++..+...+ +..+||-.+
T Consensus 90 ~a~sG~y~V~~fDEegysalRKAqR~ged-~s~VkpLft 127 (167)
T pfam05404 90 KASSGTYNVRFFDEEGYAALRKAQRNGED-VSSVKPLFT 127 (167)
T ss_pred CCCCCCEEEEEECHHHHHHHHHHHHCCCC-CCCCCCCEE
T ss_conf 16678568999670889999988655886-444786679
No 320
>PRK09072 short chain dehydrogenase; Provisional
Probab=38.35 E-value=31 Score=15.61 Aligned_cols=145 Identities=16% Similarity=0.159 Sum_probs=73.3
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC--C----CC--CCCCEEEECCCCHHHHHHHHHHHCC--CCC
Q ss_conf 796788850455306899999706878832786411213--3----34--6981783011220799999997313--887
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD--M----EP--ILGVKFFKFDFLDLDSWEFIRQAIG--GNP 136 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~--~----~~--i~gv~~~~gDi~~~~~~~~i~~~l~--~~~ 136 (227)
.|.+||=-|++-| -=+-+++.....|. +|+.++..+ . +. -.++..+..|+++.+..+.+.+... +.+
T Consensus 4 ~~K~vlITGassG-IG~a~A~~la~~G~--~vil~~R~~~~L~~~~~~l~~~~~~~~~~Dls~~~~~~~~~~~~~~~g~i 80 (262)
T PRK09072 4 KDKRVLLTGASGG-IGEALAEALCAAGA--RLLLVGRNAEKLEALAARPYPGRVRWVVADLTSEAGREAVLARAREMGGI 80 (262)
T ss_pred CCCEEEEECCCCH-HHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHCCC
T ss_conf 9988999486239-99999999998799--89999898999999999845897699997179999999999999984999
Q ss_pred CEEEECCCHHHCCCC-CCH---HHHHHHHHHHHH-HH---HHHCCC--CCCEEEEE--E--ECCC---------------
Q ss_conf 489753202110222-101---578898999889-87---641148--77469999--3--0599---------------
Q gi|254780313|r 137 DLVLSDMAYPTIGHR-KID---HLRTMSLCEAAT-FF---ALEMLN--IGGDFLVK--T--FQGG--------------- 187 (227)
Q Consensus 137 DlVlSDmapn~SG~~-~~D---~~~~~~L~~~al-~~---A~~~Lk--~gG~fV~K--~--F~G~--------------- 187 (227)
|+++.-.+....|.- +.| ....++++.... .+ ++..++ .+|..|.= + +.+.
T Consensus 81 DiLInNAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~lt~~~lp~m~~~~~G~IvnisS~ag~~~~p~~~~Y~ASKaal~~ 160 (262)
T PRK09072 81 NVLINNAGVNHFALLDQQDPEAIDRLLALNLTAPMQLTRALLPLLRAQPSAAVVNVGSTFGSIGYPGYASYCASKFALRG 160 (262)
T ss_pred CEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 89998997788986354999999999999568999999999999987699489996686662578998179999999999
Q ss_pred CHHHHHHHHHHHCCEEEEECCCCCCCC
Q ss_conf 989999999862584699768665755
Q gi|254780313|r 188 TTNDILCLLKKHFQKVIHVKPVASRAE 214 (227)
Q Consensus 188 ~~~~l~~~l~~~F~~V~~~KP~aSR~~ 214 (227)
-++.|...+...=-.|..+-|-.-+..
T Consensus 161 ~s~sL~~El~~~gI~V~~v~Pg~v~T~ 187 (262)
T PRK09072 161 FSEALRRELADTGVRVLYLAPRATRTA 187 (262)
T ss_pred HHHHHHHHHCCCCEEEEEEECCCCCCC
T ss_conf 999999984622908999972899988
No 321
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=38.29 E-value=16 Score=17.50 Aligned_cols=38 Identities=26% Similarity=0.526 Sum_probs=30.8
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEE-EECCCC
Q ss_conf 999998818447999999999864583137967888-504553
Q gi|254780313|r 38 YVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVD-LGSSPG 79 (227)
Q Consensus 38 y~~~Ak~~gyrsRaafKL~eId~kf~l~k~g~~VlD-LGaaPG 79 (227)
.+=+++-+|| |-|-.|+.+-+||++ |--+.+| =||.||
T Consensus 127 NFGm~~PeGY--RKAlRlm~lAekf~~--Pvit~IDTpGAypG 165 (318)
T PRK05724 127 NFGMPRPEGY--RKALRLMEMAERFGL--PIITFIDTPGAYPG 165 (318)
T ss_pred CCCCCCHHHH--HHHHHHHHHHHHCCC--CEEEEECCCCCCCC
T ss_conf 6799991789--999999999997099--77999348976789
No 322
>PRK04143 hypothetical protein; Provisional
Probab=38.25 E-value=5.6 Score=20.33 Aligned_cols=60 Identities=12% Similarity=0.244 Sum_probs=37.7
Q ss_pred HHHHCCCCCCCCEEEEEECCCCHHHHHH----HHHHCCCCCCEEEEEECCCCCCCC--CCCEEEECCCCHHH
Q ss_conf 9864583137967888504553068999----997068788327864112133346--98178301122079
Q gi|254780313|r 58 INEKHQILQSNRRIVDLGSSPGSWSQVA----ARITGSNANNTRVVAIDILDMEPI--LGVKFFKFDFLDLD 123 (227)
Q Consensus 58 Id~kf~l~k~g~~VlDLGaaPGgWsQva----~~~~~~~~~~~~VigVDl~~~~~i--~gv~~~~gDi~~~~ 123 (227)
..++..|+|.-++|-.=..+|-.|+++- .......| |+ |+..+.|+ +++...+||||...
T Consensus 32 ~~~~~~llR~L~Nvr~p~~~~~~~l~~qd~~L~~~~~~~~----i~--~~~~l~~~~~~~i~lw~GDIT~L~ 97 (267)
T PRK04143 32 LTDLQDLLRALANVRPALPLSDEYLNLEDAYLSDENAERV----PT--DVKDLQPIKGTNIFLWHGDITTLK 97 (267)
T ss_pred HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCC----CC--CHHHCCCCCCCCEEEECCCCCEEE
T ss_conf 7999999999845589878998999999999999998568----61--488778478996679716353356
No 323
>KOG0822 consensus
Probab=38.04 E-value=32 Score=15.58 Aligned_cols=26 Identities=15% Similarity=0.063 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf 98999889876411487746999930
Q gi|254780313|r 159 MSLCEAATFFALEMLNIGGDFLVKTF 184 (227)
Q Consensus 159 ~~L~~~al~~A~~~Lk~gG~fV~K~F 184 (227)
.||.-.+|+=|.++|++.|.++=--+
T Consensus 454 NELSPECLDG~q~fLkpdgIsIP~sY 479 (649)
T KOG0822 454 NELSPECLDGAQKFLKPDGISIPSSY 479 (649)
T ss_pred CCCCHHHHHHHHHHCCCCCEECCCHH
T ss_conf 66797787778851588855756011
No 324
>pfam03435 Saccharop_dh Saccharopine dehydrogenase. This family comprised of three structural domains that can not be separated in the linear sequence. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase. The saccharopine dehydrogenase can also function as a saccharopine reductase.
Probab=37.68 E-value=32 Score=15.55 Aligned_cols=10 Identities=30% Similarity=0.713 Sum_probs=6.4
Q ss_pred EEEEEECCCC
Q ss_conf 7888504553
Q gi|254780313|r 70 RIVDLGSSPG 79 (227)
Q Consensus 70 ~VlDLGaaPG 79 (227)
.++++|.+||
T Consensus 118 ~~~~~G~~PG 127 (384)
T pfam03435 118 AVLGCGFDPG 127 (384)
T ss_pred EEECCCCCCC
T ss_conf 9967888988
No 325
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=36.60 E-value=31 Score=15.67 Aligned_cols=58 Identities=24% Similarity=0.287 Sum_probs=25.4
Q ss_pred CCCCEEEEC-CCHHHCCCCCCHHHHHHHH--------HHHHHHHHHHCCCCCC-EEEEEEECCCCHHH
Q ss_conf 887489753-2021102221015788989--------9988987641148774-69999305999899
Q gi|254780313|r 134 GNPDLVLSD-MAYPTIGHRKIDHLRTMSL--------CEAATFFALEMLNIGG-DFLVKTFQGGTTND 191 (227)
Q Consensus 134 ~~~DlVlSD-mapn~SG~~~~D~~~~~~L--------~~~al~~A~~~Lk~gG-~fV~K~F~G~~~~~ 191 (227)
.++|+|+.| ..|+.+|.....+.+.... +..-.+.+..-++-|- .+++|=|.-+.+.+
T Consensus 48 ~~~DLILLDi~mPd~~Glell~~lR~~~~~~~VI~ITa~~d~~~v~~Al~~Ga~DYLiKPf~~~rl~~ 115 (239)
T PRK10430 48 TPIDLILLDIYMQQENGLDLLPVLHEAGCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEE 115 (239)
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHCCCHHHEECCCCHHHHHH
T ss_conf 99858997899999978999999998589981999972688999999998395030489999999999
No 326
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=36.51 E-value=29 Score=15.83 Aligned_cols=26 Identities=31% Similarity=0.429 Sum_probs=18.2
Q ss_pred CCCCCEEEEC-CCHHHCCCCCCHHHHH
Q ss_conf 3887489753-2021102221015788
Q gi|254780313|r 133 GGNPDLVLSD-MAYPTIGHRKIDHLRT 158 (227)
Q Consensus 133 ~~~~DlVlSD-mapn~SG~~~~D~~~~ 158 (227)
...+|+|+.| ..|..+|.....+.++
T Consensus 39 ~~~~dlvi~D~~mP~~~G~el~~~ir~ 65 (113)
T cd00156 39 EEKPDLILLDIMMPGMDGLELLRRIRK 65 (113)
T ss_pred HCCCCEEEECCCCCCCCCHHHHHHHHH
T ss_conf 579999997799989872699999998
No 327
>pfam00072 Response_reg Response regulator receiver domain. This domain receives the signal from the sensor partner in bacterial two-component systems. It is usually found N-terminal to a DNA binding effector domain.
Probab=36.36 E-value=34 Score=15.42 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=16.5
Q ss_pred CCCCCEEEEC-CCHHHCCCCCCHH
Q ss_conf 3887489753-2021102221015
Q gi|254780313|r 133 GGNPDLVLSD-MAYPTIGHRKIDH 155 (227)
Q Consensus 133 ~~~~DlVlSD-mapn~SG~~~~D~ 155 (227)
...+|+|+.| +.|+.+|.....+
T Consensus 40 ~~~~dlvi~Di~mP~~dG~el~~~ 63 (111)
T pfam00072 40 EKRPDLILLDIRMPGMDGLELLRR 63 (111)
T ss_pred HCCCCEEEEECCCCCCCHHHHHHH
T ss_conf 479989999536899501579999
No 328
>PRK06523 short chain dehydrogenase; Provisional
Probab=36.20 E-value=34 Score=15.40 Aligned_cols=110 Identities=16% Similarity=0.200 Sum_probs=60.2
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC-CCCCCCEEEECCCCHHHHHHHHH----HHCCCCCCEEEE
Q ss_conf 7967888504553068999997068788327864112133-34698178301122079999999----731388748975
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM-EPILGVKFFKFDFLDLDSWEFIR----QAIGGNPDLVLS 141 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~-~~i~gv~~~~gDi~~~~~~~~i~----~~l~~~~DlVlS 141 (227)
.|.++|=.|++-|==.. +++.....|. .|+..+.... +....+.++++|+++++..+.+. +.+ +++|.++.
T Consensus 8 ~gK~alITG~s~GIG~a-ia~~la~~Ga--~V~~~~r~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~-g~iDiLVn 83 (260)
T PRK06523 8 AGKRALVTGGTKGIGAA-TVARFREAGA--RVVTTARSRPDDLPEGVEFVAADLTTAEGCAAVARAVLERL-GGVDILVH 83 (260)
T ss_pred CCCEEEEECCCCHHHHH-HHHHHHHCCC--EEEEEECCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHC-CCCCEEEE
T ss_conf 99989994757699999-9999998799--99999488401379862899837999999999999999974-99979998
Q ss_pred CCC---HHHCCCCCCHHH---HHHHHHHHH----HHHHHHCC--CCCCEEE
Q ss_conf 320---211022210157---889899988----98764114--8774699
Q gi|254780313|r 142 DMA---YPTIGHRKIDHL---RTMSLCEAA----TFFALEML--NIGGDFL 180 (227)
Q Consensus 142 Dma---pn~SG~~~~D~~---~~~~L~~~a----l~~A~~~L--k~gG~fV 180 (227)
-.+ |...+..+++.. ..++++... +..+...+ +.+|..|
T Consensus 84 NAG~~~~~~~~~~~~~~~~w~~~~~~Nl~~~~~~~q~~~p~m~~~~~G~Ii 134 (260)
T PRK06523 84 VLGGSSAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPAMIARGSGVII 134 (260)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf 998876799880319999999999998499999999999999983998669
No 329
>PRK06057 short chain dehydrogenase; Provisional
Probab=35.92 E-value=34 Score=15.37 Aligned_cols=110 Identities=19% Similarity=0.211 Sum_probs=59.0
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC------CCCCCCCEEEECCCCHHHHHHHHHHHCC---CCCC
Q ss_conf 796788850455306899999706878832786411213------3346981783011220799999997313---8874
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD------MEPILGVKFFKFDFLDLDSWEFIRQAIG---GNPD 137 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~------~~~i~gv~~~~gDi~~~~~~~~i~~~l~---~~~D 137 (227)
.|.++|=-|++-|== .-+++.....| .+|+.+|+.+ .+.+ +..++++|+++++..+.+.+... ++.|
T Consensus 6 ~gKvalVTGas~GIG-~aia~~la~~G--a~Vvi~d~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~v~~~~~~~G~iD 81 (255)
T PRK06057 6 AGRVAVITGGASGIG-LATARRMRAEG--ATVVVGDIDPEAGKAAADEL-GGLFVQVDVTDEDAVNALFDTAAETYGSVD 81 (255)
T ss_pred CCCEEEEECCCCHHH-HHHHHHHHHCC--CEEEEEECCHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHHHHHHHHCCCC
T ss_conf 999899968488899-99999999869--98999969889999999864-997999816999999999999999819987
Q ss_pred EEEECCCHHH---CCCCCCHH---HHHHHHHHHHHH----HHHHCCCC--CCEEE
Q ss_conf 8975320211---02221015---788989998898----76411487--74699
Q gi|254780313|r 138 LVLSDMAYPT---IGHRKIDH---LRTMSLCEAATF----FALEMLNI--GGDFL 180 (227)
Q Consensus 138 lVlSDmapn~---SG~~~~D~---~~~~~L~~~al~----~A~~~Lk~--gG~fV 180 (227)
+++.-.+... ....+.+. .+.++++..... .+...+++ +|..|
T Consensus 82 iLVNnAGi~~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IV 136 (255)
T PRK06057 82 IAFNNAGISPPEDDSILNTGLDAWQRVQDVNLKSVYLCCKAALPHMVEAGKGSII 136 (255)
T ss_pred EEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 8998885578899862009999999999998299999999999999983995899
No 330
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=35.70 E-value=35 Score=15.35 Aligned_cols=111 Identities=17% Similarity=0.214 Sum_probs=59.5
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC--CCC--------CCCCEEEECCCCHHHHHHHH----HHHC
Q ss_conf 796788850455306899999706878832786411213--334--------69817830112207999999----9731
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD--MEP--------ILGVKFFKFDFLDLDSWEFI----RQAI 132 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~--~~~--------i~gv~~~~gDi~~~~~~~~i----~~~l 132 (227)
.|.++|=-|++- |-=.-+++.....|- +|+-+|... .+. -..+..+++|+++++..+.+ .+.+
T Consensus 2 ~gKvalITG~s~-GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~g~~~~~~~~Dv~d~~~v~~~v~~~~~~~ 78 (250)
T TIGR03206 2 KDKTAIVTGGGG-GIGGATCRRFAEEGA--KVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQAL 78 (250)
T ss_pred CCCEEEEECCCC-HHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHC
T ss_conf 519999968576-899999999998799--99999798899999999999539928999944899999999999999975
Q ss_pred CCCCCEEEECCCHHHCCCC-CC---HHHHHHHHHHHHHH----HHHHCC--CCCCEEEE
Q ss_conf 3887489753202110222-10---15788989998898----764114--87746999
Q gi|254780313|r 133 GGNPDLVLSDMAYPTIGHR-KI---DHLRTMSLCEAATF----FALEML--NIGGDFLV 181 (227)
Q Consensus 133 ~~~~DlVlSDmapn~SG~~-~~---D~~~~~~L~~~al~----~A~~~L--k~gG~fV~ 181 (227)
++.|+++.-.+.+..+.- +. |-...++++..... .+...+ +.+|..|.
T Consensus 79 -G~iDilvnnAg~~~~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVn 136 (250)
T TIGR03206 79 -GPVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERGAGRIVN 136 (250)
T ss_pred -CCCCEEEECCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf -9997999898889998903499999999999982999999999999999749917999
No 331
>PRK11173 two-component response regulator; Provisional
Probab=35.62 E-value=35 Score=15.34 Aligned_cols=50 Identities=14% Similarity=0.044 Sum_probs=32.5
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHH
Q ss_conf 99998818447999999999864583137967888504553068999997
Q gi|254780313|r 39 VQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI 88 (227)
Q Consensus 39 ~~~Ak~~gyrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~ 88 (227)
..--..+||.-..|.-..|..+.+.--.+.-.++|++-.-....+++.+.
T Consensus 20 ~~~L~~~G~~V~~a~~~~ea~~~l~~~~~DlvilDi~lp~~~G~~l~~~i 69 (237)
T PRK11173 20 KSIFEAEGYDVFEATDGAEMHQILSENDINLVIMDINLPGKNGLLLAREL 69 (237)
T ss_pred HHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHH
T ss_conf 99999889999998999999999863899899993899988730355566
No 332
>KOG1198 consensus
Probab=35.32 E-value=35 Score=15.31 Aligned_cols=79 Identities=24% Similarity=0.379 Sum_probs=46.4
Q ss_pred HHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECC---CCCCCCCCCEEEECCCCHHHHHHHHHHHCCCC
Q ss_conf 864583137967888504553068999997068788327864112---13334698178301122079999999731388
Q gi|254780313|r 59 NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI---LDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN 135 (227)
Q Consensus 59 d~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl---~~~~~i~gv~~~~gDi~~~~~~~~i~~~l~~~ 135 (227)
+..++ .++|+.||=+|++ ||-.|.|.++....+ -..|+++=- .++..--|+... -|-.+++..+.+.+..+++
T Consensus 150 ~~~~~-~~~g~~vLv~ggs-ggVG~~aiQlAk~~~-~~~v~t~~s~e~~~l~k~lGAd~v-vdy~~~~~~e~~kk~~~~~ 225 (347)
T KOG1198 150 KRSKK-LSKGKSVLVLGGS-GGVGTAAIQLAKHAG-AIKVVTACSKEKLELVKKLGADEV-VDYKDENVVELIKKYTGKG 225 (347)
T ss_pred CCCCC-CCCCCEEEEEECC-CHHHHHHHHHHHHCC-CCEEEEEECCCCHHHHHHCCCCCC-CCCCCHHHHHHHHHHCCCC
T ss_conf 43235-6899869999387-489999999998749-747999815541689997299651-2488577999987622788
Q ss_pred CCEEEE
Q ss_conf 748975
Q gi|254780313|r 136 PDLVLS 141 (227)
Q Consensus 136 ~DlVlS 141 (227)
+|+|+-
T Consensus 226 ~DvVlD 231 (347)
T KOG1198 226 VDVVLD 231 (347)
T ss_pred CEEEEE
T ss_conf 509998
No 333
>PRK11917 bifunctional adhesin/ABC transporter aspartate/glutamate-binding protein; Reviewed
Probab=34.91 E-value=11 Score=18.48 Aligned_cols=20 Identities=15% Similarity=0.057 Sum_probs=14.0
Q ss_pred HHHHHCCCCCCEEEECCCHH
Q ss_conf 99973138874897532021
Q gi|254780313|r 127 FIRQAIGGNPDLVLSDMAYP 146 (227)
Q Consensus 127 ~i~~~l~~~~DlVlSDmapn 146 (227)
.+.....+++|+|++.|..+
T Consensus 93 ~~p~L~~gkvD~i~~~~tiT 112 (259)
T PRK11917 93 RGPLLDNGSVDAVIATFTIT 112 (259)
T ss_pred HHHHHHCCCEEEEEECCCCC
T ss_conf 76898779855998664767
No 334
>PRK09186 flagellin modification protein A; Provisional
Probab=34.83 E-value=36 Score=15.26 Aligned_cols=78 Identities=15% Similarity=0.078 Sum_probs=46.7
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CCC--CCCCEEEECCCCHHHHHHHHHHHCC--
Q ss_conf 796788850455306899999706878832786411213---------334--6981783011220799999997313--
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------MEP--ILGVKFFKFDFLDLDSWEFIRQAIG-- 133 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~~--i~gv~~~~gDi~~~~~~~~i~~~l~-- 133 (227)
.|.++|=-|++-|== .-+++.....| ..|+.+|+.. +.. -..+.++++|+++++..+.+.+...
T Consensus 3 ~gK~~lVTGgs~GIG-~aia~~la~~G--a~V~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~Dvt~~~~v~~~~~~~~~~ 79 (255)
T PRK09186 3 EGKTILITGAGGLIG-SALVKAILEAG--GIVIAADINKEALNKLLESLGTIEKTKLTLVELDITDQESLEEFLSKSQER 79 (255)
T ss_pred CCCEEEEECCCCHHH-HHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 959899979586899-99999999879--999999698899999999998705980799984689999999999999998
Q ss_pred -CCCCEEEECCCHHH
Q ss_conf -88748975320211
Q gi|254780313|r 134 -GNPDLVLSDMAYPT 147 (227)
Q Consensus 134 -~~~DlVlSDmapn~ 147 (227)
++.|+++.-.+|..
T Consensus 80 ~g~id~lVnnA~~~~ 94 (255)
T PRK09186 80 YGKIDGAVNCAYPRN 94 (255)
T ss_pred HCCCCEEEECCCCCC
T ss_conf 199778997576678
No 335
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=34.83 E-value=36 Score=15.26 Aligned_cols=11 Identities=0% Similarity=0.208 Sum_probs=5.7
Q ss_pred CEEEEEECCCC
Q ss_conf 67888504553
Q gi|254780313|r 69 RRIVDLGSSPG 79 (227)
Q Consensus 69 ~~VlDLGaaPG 79 (227)
+.|++|+|.++
T Consensus 75 d~V~HlAa~~~ 85 (338)
T PRK10675 75 DTVIHFAGLKA 85 (338)
T ss_pred CEEEECCCCCC
T ss_conf 99998986545
No 336
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=34.77 E-value=36 Score=15.26 Aligned_cols=79 Identities=22% Similarity=0.280 Sum_probs=44.0
Q ss_pred CCCCC-CEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCC--CCCC------------------CCC--CEEEECCCC
Q ss_conf 31379-678885045530689999970687883278641121--3334------------------698--178301122
Q gi|254780313|r 64 ILQSN-RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL--DMEP------------------ILG--VKFFKFDFL 120 (227)
Q Consensus 64 l~k~g-~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~--~~~~------------------i~g--v~~~~gDi~ 120 (227)
-+..| .+||=+||+-|-= .|++....-|.+...+||=.- +-+. -.| +..+.||.+
T Consensus 36 ~~~~gpK~VLViGaStGyG--LAsRI~aaFg~gA~TiGV~fEr~~~~~k~gtaGWYN~~aF~~~A~~~Gl~a~~~ngDAF 113 (400)
T PRK13656 36 PIANGPKKVLVIGASSGYG--LASRITAAFGSGADTLGVFFERPGSEKKPGTAGWYNSAAFDKFAKAAGLYAKSINGDAF 113 (400)
T ss_pred CCCCCCCEEEEEECCCCCC--HHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEECCCCCC
T ss_conf 8678996389994687631--99999998548987267885158889987786431689999999977972121452006
Q ss_pred HHHHHHH----HHHHCCCCCCEEEEC-CCH
Q ss_conf 0799999----997313887489753-202
Q gi|254780313|r 121 DLDSWEF----IRQAIGGNPDLVLSD-MAY 145 (227)
Q Consensus 121 ~~~~~~~----i~~~l~~~~DlVlSD-map 145 (227)
+.++.+. |++.+ |++|+|+=- .||
T Consensus 114 S~e~K~~vI~~Ik~~~-G~vDlvVYSLAap 142 (400)
T PRK13656 114 SDEIKQKVIELIKQDL-GQVDLVVYSLASP 142 (400)
T ss_pred CHHHHHHHHHHHHHHC-CCCCEEEEECCCC
T ss_conf 7899999999999865-9846799964577
No 337
>KOG4022 consensus
Probab=34.44 E-value=36 Score=15.22 Aligned_cols=88 Identities=18% Similarity=0.173 Sum_probs=48.9
Q ss_pred CCEEEEEECCCCCCCCCCCEEEECC--CCH--HHHHHHHHHHCC-CCCCEEEECCCHHHCCCC-CCHHHHHHHH------
Q ss_conf 8327864112133346981783011--220--799999997313-887489753202110222-1015788989------
Q gi|254780313|r 94 NNTRVVAIDILDMEPILGVKFFKFD--FLD--LDSWEFIRQAIG-GNPDLVLSDMAYPTIGHR-KIDHLRTMSL------ 161 (227)
Q Consensus 94 ~~~~VigVDl~~~~~i~gv~~~~gD--i~~--~~~~~~i~~~l~-~~~DlVlSDmapn~SG~~-~~D~~~~~~L------ 161 (227)
++..|..||+.+-+.-.--..+.+| +++ ....+++-+.+. .++|.|+|=..-=..|+. +.|-....+|
T Consensus 26 nnywV~siDl~eNe~Ad~sI~V~~~~swtEQe~~v~~~vg~sL~gekvDav~CVAGGWAGGnAksKdl~KNaDLMwKQSv 105 (236)
T KOG4022 26 NNYWVLSIDLSENEQADSSILVDGNKSWTEQEQSVLEQVGSSLQGEKVDAVFCVAGGWAGGNAKSKDLVKNADLMWKQSV 105 (236)
T ss_pred CCEEEEEEEECCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHCHHHHHHHHH
T ss_conf 68689997502566566117963775356889999999987624253436999605545777422566643026778889
Q ss_pred --HHHHHHHHHHCCCCCCEEEE
Q ss_conf --99889876411487746999
Q gi|254780313|r 162 --CEAATFFALEMLNIGGDFLV 181 (227)
Q Consensus 162 --~~~al~~A~~~Lk~gG~fV~ 181 (227)
......+|...|++||-+-.
T Consensus 106 wtSaIsa~lAt~HLK~GGLL~L 127 (236)
T KOG4022 106 WTSAISAKLATTHLKPGGLLQL 127 (236)
T ss_pred HHHHHHHHHHHHCCCCCCEEEE
T ss_conf 9999999999843588853552
No 338
>CHL00194 ycf39 Ycf39; Provisional
Probab=34.28 E-value=37 Score=15.21 Aligned_cols=67 Identities=12% Similarity=0.189 Sum_probs=30.2
Q ss_pred CEEEEEECCCCHHH-HHHHHHHCCCCCCEEEEEECCCCCCC--CCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 67888504553068-99999706878832786411213334--698178301122079999999731388748975
Q gi|254780313|r 69 RRIVDLGSSPGSWS-QVAARITGSNANNTRVVAIDILDMEP--ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLS 141 (227)
Q Consensus 69 ~~VlDLGaaPGgWs-Qva~~~~~~~~~~~~VigVDl~~~~~--i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlS 141 (227)
|+||=.|+ -|-== +++.++. ..|...+++.=+...... ..|+..+.||+.++++... .+.| +|.|+.
T Consensus 1 M~ILV~GA-TG~lGr~vVr~Ll-~~G~~Vr~lvRnp~ka~~l~~~Gve~v~gDl~dpesl~~---Al~G-vdaVi~ 70 (319)
T CHL00194 1 MSLLVIGA-TGTLGRQIVRRAL-DEGYQVKCLVRNLRKAAFLKEWGAELVYGDLSLPETIPP---ALEG-ITAIID 70 (319)
T ss_pred CEEEEECC-CCHHHHHHHHHHH-HCCCCEEEEECCHHHHHHHHHCCCEEEEECCCCHHHHHH---HHCC-CCEEEE
T ss_conf 97999899-8589999999999-688908999578676323421596799942788778999---9659-967999
No 339
>pfam12241 Enoyl_reductase Trans-2-enoyl-CoA reductase catalytic region. This family of trans-2-enoyl-CoA reductases, EC:1.3.1.44, carries the the catalytic sites of the enzyme, characterized by the conserved sequence motifs: YNThhhFxK, and YShAPxR. In Euglena where the enzyme has been characterized it catalyses the reduction of enoyl-CoA to acyl-CoA in an unusual fatty acid pathway in mitochondria. the whole path performs a malonyl-CoA independent synthesis of fatty acids leading to accumulation of wax esters, which serve as the sink for electrons stemming from glycolytic ATP synthesis and pyruvate oxidation.
Probab=34.27 E-value=37 Score=15.21 Aligned_cols=21 Identities=29% Similarity=0.567 Sum_probs=15.5
Q ss_pred HHHHHHCCCHHHHHHHHHCCHHHH
Q ss_conf 999964089999999881844799
Q gi|254780313|r 28 DWLNRHINDPYVQRAQLEGWRARS 51 (227)
Q Consensus 28 ~W~~r~~~D~y~~~Ak~~gyrsRa 51 (227)
-|++.. .|-+.|+++|+-+++
T Consensus 7 GWYN~~---aF~~~A~~~Gl~Ak~ 27 (237)
T pfam12241 7 GWYNNA---AFEKEAEEAGLYAKS 27 (237)
T ss_pred CHHHHH---HHHHHHHHCCCEEEE
T ss_conf 237689---999999977983464
No 340
>PRK12746 short chain dehydrogenase; Provisional
Probab=34.15 E-value=37 Score=15.20 Aligned_cols=114 Identities=13% Similarity=0.131 Sum_probs=59.3
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEE-EEECCCC-------CCC-CCCCEEEECCCCHHHHHHHHH----HHC-
Q ss_conf 79678885045530689999970687883278-6411213-------334-698178301122079999999----731-
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRV-VAIDILD-------MEP-ILGVKFFKFDFLDLDSWEFIR----QAI- 132 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~V-igVDl~~-------~~~-i~gv~~~~gDi~~~~~~~~i~----~~l- 132 (227)
.|.++|=.|++.| -=.-+++....+|....+ .+.|-.. ++. -..+.++++|+++.+..+.+. +.+
T Consensus 5 ~gKvalITGga~G-IG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~ 83 (254)
T PRK12746 5 DGKVALVTGASRG-IGRAIAMRLANDGALVAIHYGRNKAAADETIREIESNGGKAFLIEADLNSIDGVKKLVEQLKNELQ 83 (254)
T ss_pred CCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHH
T ss_conf 9988999484768-999999999987999999659998999999999985599289997577999999999999999986
Q ss_pred ----CCCCCEEEECCCHHHCCC-CCCH---HHHHHHHHHHH----HHHHHHCCCCCCEEEE
Q ss_conf ----388748975320211022-2101---57889899988----9876411487746999
Q gi|254780313|r 133 ----GGNPDLVLSDMAYPTIGH-RKID---HLRTMSLCEAA----TFFALEMLNIGGDFLV 181 (227)
Q Consensus 133 ----~~~~DlVlSDmapn~SG~-~~~D---~~~~~~L~~~a----l~~A~~~Lk~gG~fV~ 181 (227)
.+++|++++..+....+. .+.+ -...++++... ...+...++.+|..|.
T Consensus 84 ~~~g~g~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~f~~~k~~~p~m~~~G~IVn 144 (254)
T PRK12746 84 IRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVIN 144 (254)
T ss_pred HHCCCCCCCEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 6416898518997997889999144999999999998534689999999999861696699
No 341
>KOG2232 consensus
Probab=33.48 E-value=11 Score=18.55 Aligned_cols=37 Identities=16% Similarity=0.264 Sum_probs=25.0
Q ss_pred HHHHHHHCCCCCCCCEE----EEEECCCCHHHHHHHHHHCC
Q ss_conf 99998645831379678----88504553068999997068
Q gi|254780313|r 55 LLQINEKHQILQSNRRI----VDLGSSPGSWSQVAARITGS 91 (227)
Q Consensus 55 L~eId~kf~l~k~g~~V----lDLGaaPGgWsQva~~~~~~ 91 (227)
+..++.+|.-+...++| .+--++|||+.||+...+..
T Consensus 101 i~RLqarYG~lY~~~NVaiSGtHTHagPgGylqy~~y~vts 141 (734)
T KOG2232 101 IERLQARYGNLYTEDNVAISGTHTHAGPGGYLQYVLYIVTS 141 (734)
T ss_pred HHHHHHHHCCCCCCCCEEEECCCCCCCCCCEEEEEEEEEHH
T ss_conf 99998764342003644675210367886415552231012
No 342
>pfam01073 3Beta_HSD 3-beta hydroxysteroid dehydrogenase/isomerase family. The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones.
Probab=32.86 E-value=38 Score=15.06 Aligned_cols=30 Identities=17% Similarity=0.188 Sum_probs=14.8
Q ss_pred CCCEEEECCCCHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf 9817830112207999999973138874897532
Q gi|254780313|r 110 LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDM 143 (227)
Q Consensus 110 ~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDm 143 (227)
..+.+++||+++.+..+.+.+ .+|+|++=+
T Consensus 45 ~~~~~v~gDl~d~~~l~~~~~----~~D~V~H~A 74 (280)
T pfam01073 45 QVITYIEGDVTDKQDLRRALQ----GSDVVIHTA 74 (280)
T ss_pred CCCEEEECCCCCHHHHHHHHH----CCCEEEEEC
T ss_conf 887599912899999999984----799899721
No 343
>pfam05575 V_cholerae_RfbT Vibrio cholerae RfbT protein. This family consists of several RfbT proteins from Vibrio cholerae. It has been found that genetic alteration of the rfbT gene is responsible for serotype conversion of Vibrio cholerae O1 and determines the difference between the Ogawa and Inaba serotypes, in that the presence of rfbT is sufficient for Inaba-to-Ogawa serotype conversion.
Probab=32.84 E-value=39 Score=15.06 Aligned_cols=141 Identities=21% Similarity=0.321 Sum_probs=69.5
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCC-CCCC-C--------CCCEEEE--CCCCHHH--HH-----
Q ss_conf 1379678885045530689999970687883278641121-3334-6--------9817830--1122079--99-----
Q gi|254780313|r 65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL-DMEP-I--------LGVKFFK--FDFLDLD--SW----- 125 (227)
Q Consensus 65 ~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~-~~~~-i--------~gv~~~~--gDi~~~~--~~----- 125 (227)
.+...+.+|+|+.-|-|+-.|++.+. .|+|+++..+ +|+. + |-|.|.. +-|.+.+ ..
T Consensus 77 ckhdttyidiganvgtfcgiaarhit----qgkiiaiepltemensirmnvqlnnplvefhhfgcaigenegenifevye 152 (286)
T pfam05575 77 CKHDTTYIDIGANVGTFCGIAARHIT----QGKIIAIEPLTEMENSIRMNVQLNNPLVEFHHFGCAIGENEGENIFEVYE 152 (286)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHCC----CCCEEEEECHHHHHHHEEEEEEECCCCEEEEECCEEECCCCCCCEEEEEE
T ss_conf 25776389706662121105556404----67269983005542023664560785125343122204667763478987
Q ss_pred --HH-----------HHHHCC-CCC---CEEEECCCHHHCCCCCCHHH-HHHHHHHHHHHHHHHCCCCCCE--EEEEEEC
Q ss_conf --99-----------997313-887---48975320211022210157-8898999889876411487746--9999305
Q gi|254780313|r 126 --EF-----------IRQAIG-GNP---DLVLSDMAYPTIGHRKIDHL-RTMSLCEAATFFALEMLNIGGD--FLVKTFQ 185 (227)
Q Consensus 126 --~~-----------i~~~l~-~~~---DlVlSDmapn~SG~~~~D~~-~~~~L~~~al~~A~~~Lk~gG~--fV~K~F~ 185 (227)
.. |..... ..+ .+---|++|--|-.-.+|.. .-+++.....++.. +.+|. .+|=-|.
T Consensus 153 fdnrvsslyfkkntdiadkvknsqvlvrklssldisptnsvvikidaegaeieilnqiyefte---khngieyyicfefa 229 (286)
T pfam05575 153 FDNRVSSLYFKKNTDIADKVKNSQVLVRKLSSLDISPTNSVVIKIDAEGAEIEILNQIYEFTE---KHNGIEYYICFEFA 229 (286)
T ss_pred ECCCEEEEEEECCCCHHHHHCCHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH---HCCCEEEEEEEHHH
T ss_conf 337100467732774787613307777555206658886089998378750258989998776---33886899870443
Q ss_pred -------CCCHHHHHHHHHHHCC-EEEEECCCCCC
Q ss_conf -------9998999999986258-46997686657
Q gi|254780313|r 186 -------GGTTNDILCLLKKHFQ-KVIHVKPVASR 212 (227)
Q Consensus 186 -------G~~~~~l~~~l~~~F~-~V~~~KP~aSR 212 (227)
...+.++...+...|. +.+.+.|.+|-
T Consensus 230 mghiqrsnrtfdeifniinskfgskayfihplssa 264 (286)
T pfam05575 230 MGHIQRSNRTFDEIFNIINSKFGSKAYFIHPLSSA 264 (286)
T ss_pred HHHHHHCCCCHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf 22465336549999998753036723786005434
No 344
>pfam03341 Pox_mRNA-cap Poxvirus mRNA capping enzyme, small subunit. The small subunit of the poxvirus mRNA capping enzyme has been found to have a structure which suggests that it started life as an RNA cap 2-prime O-methyltransferase. It has subsequently evolved to a catalytically inactive form that has been retained in order to help stabilize the large subunit, D1, and to enhance its methyltransferase activity through an allosteric mechanism.
Probab=32.81 E-value=30 Score=15.73 Aligned_cols=89 Identities=20% Similarity=0.261 Sum_probs=48.0
Q ss_pred CCCCEEEECCCHHHC-CCCCCHHHHHHH-HHHHHHHHH------HHC------CCCCCEEEEEE--ECCCCHHHHHHHHH
Q ss_conf 887489753202110-222101578898-999889876------411------48774699993--05999899999998
Q gi|254780313|r 134 GNPDLVLSDMAYPTI-GHRKIDHLRTMS-LCEAATFFA------LEM------LNIGGDFLVKT--FQGGTTNDILCLLK 197 (227)
Q Consensus 134 ~~~DlVlSDmapn~S-G~~~~D~~~~~~-L~~~al~~A------~~~------Lk~gG~fV~K~--F~G~~~~~l~~~l~ 197 (227)
.++|.|+.|+++.-. =-++.+..++.. |.+.-|.++ ..+ +...-..|+|+ .-|.....-++...
T Consensus 94 ikADAVV~DLSA~nkLfkker~~ikSNN~L~eNNLyisdY~mlTFeVfRPlf~~~sEk~civKlPTLFGr~vv~~~RVYC 173 (287)
T pfam03341 94 IKADAVVADLSARNKLFKKERDAIKSNNYLTENNLYISDYKMLTFEVFRPLFDISSEKFCIVKLPTLFGRTVVNAVRVYC 173 (287)
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCEEEHHHHHHHHHHCCCEEEEEECCCHHCCHHHHHHHHHH
T ss_conf 44567998430122566644667634672232646774041341135567877232417999754041311577778877
Q ss_pred HHCCEEEEECCCC-CC-CCCCEEEEEECC
Q ss_conf 6258469976866-57-558249898307
Q gi|254780313|r 198 KHFQKVIHVKPVA-SR-AESVEMFLLAKG 224 (227)
Q Consensus 198 ~~F~~V~~~KP~a-SR-~~S~E~Ylv~~g 224 (227)
..|+.|+.+|-.+ |- ++|+ -+||.+
T Consensus 174 SlFk~VrLfKc~sDSWlKDSA--imVas~ 200 (287)
T pfam03341 174 SLFKNVRLFKCVSDSWLKDSA--IMVASD 200 (287)
T ss_pred HHHHHEEEEECCCCCHHCCCE--EEEECC
T ss_conf 553004666316510112413--778547
No 345
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=32.68 E-value=39 Score=15.04 Aligned_cols=158 Identities=10% Similarity=0.091 Sum_probs=69.4
Q ss_pred HHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCH-HHHHHHHHHCCCC---CCEEEE-EECCCCCCCCC----CC
Q ss_conf 988184479999999998645831379678885045530-6899999706878---832786-41121333469----81
Q gi|254780313|r 42 AQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS-WSQVAARITGSNA---NNTRVV-AIDILDMEPIL----GV 112 (227)
Q Consensus 42 Ak~~gyrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGg-WsQva~~~~~~~~---~~~~Vi-gVDl~~~~~i~----gv 112 (227)
=..+||....|.-..|..+.+.--.+.-.+||++- |++ =.+++.+ +...+ .-+.|+ +-.-...+-+. |+
T Consensus 22 L~~~g~~v~~a~~g~~a~~~l~~~~~DliilDi~l-P~~dG~~~~~~-ir~~~~~~~~PII~lta~~~~~d~v~gl~~GA 99 (229)
T PRK10161 22 LEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWML-PGGSGIQFIKH-LKRESMTRDIPVVMLTARGEEEDRVRGLETGA 99 (229)
T ss_pred HHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCC-CCCCCHHHHHH-HHHCCCCCCCCEEEEECCCCHHHHHHHHHCCC
T ss_conf 99779999998999999999852899899997899-88763358788-77502468975899955666577999987698
Q ss_pred -EEEECCCCHHHHHHHHHHHCCC----CCCEE--EECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE---
Q ss_conf -7830112207999999973138----87489--7532021102221015788989998898764114877469999---
Q gi|254780313|r 113 -KFFKFDFLDLDSWEFIRQAIGG----NPDLV--LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK--- 182 (227)
Q Consensus 113 -~~~~gDi~~~~~~~~i~~~l~~----~~DlV--lSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K--- 182 (227)
.++.--|.-.+....|...+.. ..+-+ ..|...|.+.....-.-..++|......+-.-++...|..|.+
T Consensus 100 DDYl~KPf~~~EL~aRi~a~lrR~~~~~~~~~~~~~~l~~d~~~~~v~~~~~~i~LT~~E~~LL~~L~~~~g~vvsr~~L 179 (229)
T PRK10161 100 DDYITKPFSPKELVARIKAVMRRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 (229)
T ss_pred CEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCEEEEEEEEEEEECCEEEECCHHHHHHHHHHHHCCCCCCCHHHH
T ss_conf 76520899989999999999712377776543267778986101599999999870689999999999779987979999
Q ss_pred ---EECC-----C-CHHHHHHHHHHHCC
Q ss_conf ---3059-----9-98999999986258
Q gi|254780313|r 183 ---TFQG-----G-TTNDILCLLKKHFQ 201 (227)
Q Consensus 183 ---~F~G-----~-~~~~l~~~l~~~F~ 201 (227)
+|.. . .....+..+++.++
T Consensus 180 ~~~vwg~~~~~~~rtldv~I~rLRkKl~ 207 (229)
T PRK10161 180 LNHVWGTNVYVEDRTVDVHIRRLRKALE 207 (229)
T ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 9986399989884739999999999745
No 346
>PRK05866 short chain dehydrogenase; Provisional
Probab=32.55 E-value=39 Score=15.03 Aligned_cols=111 Identities=22% Similarity=0.281 Sum_probs=59.2
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC--C----CCC----CCCEEEECCCCHHHHHHHHHHHCC---
Q ss_conf 796788850455306899999706878832786411213--3----346----981783011220799999997313---
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD--M----EPI----LGVKFFKFDFLDLDSWEFIRQAIG--- 133 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~--~----~~i----~gv~~~~gDi~~~~~~~~i~~~l~--- 133 (227)
.|.+||=-|++-|==...|.... ..| .+|+.+|... . +.+ ..+..+..|+++.+..+.+.+...
T Consensus 39 ~GKvaLITGassGIG~aiA~~la-~~G--a~Vvl~~R~~~~l~~~~~~i~~~g~~~~~~~~Dvtd~~~v~~~v~~~~~~~ 115 (290)
T PRK05866 39 TGKRILLTGASSGIGEAAAEKFA-RRG--ATVVAVARRKDLLDAVADRITAAGGDAMAIPCDLSDLDAVDALVADVEERI 115 (290)
T ss_pred CCCEEEECCCCCHHHHHHHHHHH-HCC--CEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 99989990813099999999999-869--989999899999999999999649908999778898999999999999985
Q ss_pred CCCCEEEECCCHHHCCC--CCC----HHHHHHHHHHHHHHH-HH----HCCC-CCCEEE
Q ss_conf 88748975320211022--210----157889899988987-64----1148-774699
Q gi|254780313|r 134 GNPDLVLSDMAYPTIGH--RKI----DHLRTMSLCEAATFF-AL----EMLN-IGGDFL 180 (227)
Q Consensus 134 ~~~DlVlSDmapn~SG~--~~~----D~~~~~~L~~~al~~-A~----~~Lk-~gG~fV 180 (227)
+..|+++.-.+....+. ... |-.+.++++...... +. .+++ .+|..|
T Consensus 116 G~iDiLVNNAG~~~~~~~~~~~~~~~d~~~~~~vN~~g~~~l~~~~lp~M~~~~~G~IV 174 (290)
T PRK05866 116 GGVDILINNAGRSIRRPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMIERGDGHII 174 (290)
T ss_pred CCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 99888997576667874222157799999999998399999998750999966996499
No 347
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=32.31 E-value=39 Score=15.01 Aligned_cols=35 Identities=20% Similarity=0.142 Sum_probs=20.7
Q ss_pred HHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEC
Q ss_conf 98818447999999999864583137967888504
Q gi|254780313|r 42 AQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76 (227)
Q Consensus 42 Ak~~gyrsRaafKL~eId~kf~l~k~g~~VlDLGa 76 (227)
=+.+||...+|.-..|..+.+.-..+.-.+||+.-
T Consensus 25 L~~~g~~v~~a~~~~~a~~~~~~~~~DlvilDi~l 59 (239)
T PRK09468 25 LTEQGFQVRSAANAEQMDRLLTRESFHLMVLDLML 59 (239)
T ss_pred HHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCC
T ss_conf 99889999998999999999975899899987899
No 348
>pfam08471 Ribonuc_red_2_N Class II vitamin B12-dependent ribonucleotide reductase. This domain is found to the N-terminus of the ribonucleotide reductase barrel domain (pfam02867). It occurs in bacterial class II ribonucleotide reductase proteins which depend upon coenzyme B12 (deoxyadenosylcobalamine).
Probab=32.00 E-value=23 Score=16.50 Aligned_cols=16 Identities=50% Similarity=0.804 Sum_probs=12.6
Q ss_pred CCCCHHHHHHHHHHCC
Q ss_conf 4553068999997068
Q gi|254780313|r 76 SSPGSWSQVAARITGS 91 (227)
Q Consensus 76 aaPGgWsQva~~~~~~ 91 (227)
..|-+|||+|++.+..
T Consensus 12 E~P~~WSq~A~~Ivaq 27 (86)
T pfam08471 12 EVPESWSQVASDIVAQ 27 (86)
T ss_pred CCCCHHHHHHHHHHHH
T ss_conf 3683276768899999
No 349
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=31.73 E-value=40 Score=14.95 Aligned_cols=48 Identities=13% Similarity=0.155 Sum_probs=18.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHH
Q ss_conf 2221015788989998898764114877469999305999899999998
Q gi|254780313|r 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197 (227)
Q Consensus 149 G~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~ 197 (227)
|....|-.-.-+++.+ +.++...-++|..|-+=--......++...+.
T Consensus 220 G~q~Rdf~yV~D~v~a-~~~~~~~~~~ge~yNiG~g~~~~~~~~~~~i~ 267 (355)
T PRK10217 220 GQQIRDWLYVEDHARA-LYCVATTGKVGETYNIGGHNERKNLDVVETIC 267 (355)
T ss_pred CCEEEEEEEHHHHHHH-HHHHHHCCCCCCEEEECCCCCCCHHHHHHHHH
T ss_conf 9828975858999999-99999669999979979999620799999999
No 350
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=31.67 E-value=40 Score=14.94 Aligned_cols=76 Identities=17% Similarity=0.248 Sum_probs=46.4
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CCC-CCCCEEEECCCCHHHHHHHHHHHCC---
Q ss_conf 796788850455306899999706878832786411213---------334-6981783011220799999997313---
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------MEP-ILGVKFFKFDFLDLDSWEFIRQAIG--- 133 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~~-i~gv~~~~gDi~~~~~~~~i~~~l~--- 133 (227)
.|.++|=.|++-|==...+..+ ...| ..|+.+|..+ ++. -..+.++++|+++++..+.+.+...
T Consensus 5 ~gK~alITGgs~GIG~aia~~l-a~~G--~~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (253)
T PRK12826 5 MGRVALVTGAARGIGRAIAVRF-AADG--ADVIVVDICGQAAAATAELVAAAGGKARAYQVDVRDRAALKALVAAGVERF 81 (253)
T ss_pred CCCEEEEECCCCHHHHHHHHHH-HHCC--CEEEEEECCHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHH
T ss_conf 9988999489778999999999-9879--989999898899999999998509958999951799999999999999983
Q ss_pred CCCCEEEECCCH
Q ss_conf 887489753202
Q gi|254780313|r 134 GNPDLVLSDMAY 145 (227)
Q Consensus 134 ~~~DlVlSDmap 145 (227)
+++|+++.-.+.
T Consensus 82 g~iD~lvnnAg~ 93 (253)
T PRK12826 82 GRLDILVANAGI 93 (253)
T ss_pred CCCCEEEECCCC
T ss_conf 998789989988
No 351
>PRK12744 short chain dehydrogenase; Provisional
Probab=31.61 E-value=40 Score=14.93 Aligned_cols=112 Identities=15% Similarity=0.149 Sum_probs=60.9
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC------C----CCC----CCCEEEECCCCHHHHHHHHHHHC
Q ss_conf 796788850455306899999706878832786411213------3----346----98178301122079999999731
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD------M----EPI----LGVKFFKFDFLDLDSWEFIRQAI 132 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~------~----~~i----~gv~~~~gDi~~~~~~~~i~~~l 132 (227)
.|.++|=-|++-| -=..+++.....| ..|+.+|+.. . +.+ ..+.++++|+++++..+.+.+..
T Consensus 7 ~gKvalVTGgs~G-IG~aiA~~la~~G--a~vv~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~ 83 (257)
T PRK12744 7 KGKVVLIAGGAKN-LGGLIARDLAAQG--AKAVAIHYNSAATKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDA 83 (257)
T ss_pred CCCEEEEECCCCH-HHHHHHHHHHHCC--CEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHH
T ss_conf 9998999288758-9999999999879--989999378743689999999999973992899976889999999999999
Q ss_pred C---CCCCEEEECCCHHHCC-CCCCH---HHHHHHHHHHH----HHHHHHCCCCCCEEEE
Q ss_conf 3---8874897532021102-22101---57889899988----9876411487746999
Q gi|254780313|r 133 G---GNPDLVLSDMAYPTIG-HRKID---HLRTMSLCEAA----TFFALEMLNIGGDFLV 181 (227)
Q Consensus 133 ~---~~~DlVlSDmapn~SG-~~~~D---~~~~~~L~~~a----l~~A~~~Lk~gG~fV~ 181 (227)
. ++.|+++.-.+....+ ..+++ -.+.++++... +.-+...++.+|..|.
T Consensus 84 ~~~~G~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~m~~~G~ii~ 143 (257)
T PRK12744 84 KAAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVT 143 (257)
T ss_pred HHHCCCCCEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 998099889997664456772333228888889888876699999999998741894999
No 352
>COG5136 U1 snRNP-specific protein C [RNA processing and modification]
Probab=31.02 E-value=35 Score=15.31 Aligned_cols=44 Identities=18% Similarity=0.154 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHHCCHHHHHHHHHHHHHH----------------CCCCCCCCEEEEEECCCC
Q ss_conf 0899999998818447999999999864----------------583137967888504553
Q gi|254780313|r 34 INDPYVQRAQLEGWRARSAYKLLQINEK----------------HQILQSNRRIVDLGSSPG 79 (227)
Q Consensus 34 ~~D~y~~~Ak~~gyrsRaafKL~eId~k----------------f~l~k~g~~VlDLGaaPG 79 (227)
+.|+|.++|. .-..-++-+|.+|-.. |.-+.|+++++-|+|.|-
T Consensus 34 ~~dYY~~~a~--di~~e~~~~lr~i~~~G~kv~c~gnks~~~p~~~a~~p~d~~~nL~~p~p 93 (188)
T COG5136 34 RKDYYMEMAE--DIAAEMASILRDIKTAGEKVECEGNKSTSYPPFPAFPPGDFYLNLALPEP 93 (188)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCHHHHCCCCCC
T ss_conf 9999999999--99999999999886157557863677667787566896222220037999
No 353
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=30.82 E-value=42 Score=14.85 Aligned_cols=80 Identities=14% Similarity=0.176 Sum_probs=49.5
Q ss_pred HCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCC-------C-CCCCEEEECCCCHHHHHHHHHHHC
Q ss_conf 45831379678885045530689999970687883278641121333-------4-698178301122079999999731
Q gi|254780313|r 61 KHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME-------P-ILGVKFFKFDFLDLDSWEFIRQAI 132 (227)
Q Consensus 61 kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~-------~-i~gv~~~~gDi~~~~~~~~i~~~l 132 (227)
.|+| .|.++|=.|++-|==...|.. ....| ..|+++|+.... . -..+..+++|+++++..+.+.+..
T Consensus 5 ~~~L--~gK~alITGas~GIG~aia~~-la~~G--a~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 79 (253)
T PRK08993 5 AFSL--EGKVAVVTGCDTGLGQGMALG-LAEAG--CDIVGINIVEPTETIEQVTALGRRFLSLTADLRKIDGIPALLERA 79 (253)
T ss_pred CCCC--CCCEEEEECCCCHHHHHHHHH-HHHCC--CEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHH
T ss_conf 6399--999899938876899999999-99879--999995587749999999965995799980379999999999999
Q ss_pred C---CCCCEEEECCCH
Q ss_conf 3---887489753202
Q gi|254780313|r 133 G---GNPDLVLSDMAY 145 (227)
Q Consensus 133 ~---~~~DlVlSDmap 145 (227)
. +++|+++.-.+.
T Consensus 80 ~~~~G~iDilVnnAG~ 95 (253)
T PRK08993 80 VAEFGHIDILVNNAGL 95 (253)
T ss_pred HHHHCCCEEEEECCCC
T ss_conf 9984997299989977
No 354
>PRK10508 hypothetical protein; Provisional
Probab=30.72 E-value=40 Score=14.95 Aligned_cols=33 Identities=24% Similarity=0.240 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHH
Q ss_conf 999999999864583137967888504553068
Q gi|254780313|r 50 RSAYKLLQINEKHQILQSNRRIVDLGSSPGSWS 82 (227)
Q Consensus 50 RaafKL~eId~kf~l~k~g~~VlDLGaaPGgWs 82 (227)
-|.||..|.-.--.-+-||..=|-||-|||+=-
T Consensus 86 ysP~kVAE~f~~L~~L~PgRiDLGlGRapG~~~ 118 (333)
T PRK10508 86 HSPLVIAEQFGTLNTLYPGRIDLGLGRAPGSDQ 118 (333)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCH
T ss_conf 988999999999986379877998357899861
No 355
>KOG2775 consensus
Probab=30.37 E-value=18 Score=17.20 Aligned_cols=47 Identities=17% Similarity=0.294 Sum_probs=30.3
Q ss_pred CCCCHHHHHHHHCCCHH--HHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEC
Q ss_conf 64007999996408999--99998818447999999999864583137967888504
Q gi|254780313|r 22 CQGSSRDWLNRHINDPY--VQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76 (227)
Q Consensus 22 ~~~ss~~W~~r~~~D~y--~~~Ak~~gyrsRaafKL~eId~kf~l~k~g~~VlDLGa 76 (227)
.+.+.++-|.|...|.| +++|-+.+-+.|-+-+ .+++||++.+|+|-
T Consensus 69 ~tdeekr~ler~~~~i~~d~rraAE~HRqvR~yv~--------s~ikPGmtm~ei~e 117 (397)
T KOG2775 69 TTDEEKRELERTESDIYQDLRRAAEAHRQVRKYVQ--------SIIKPGMTMIEICE 117 (397)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHCCCCCCHHHHHH
T ss_conf 33388888875304878889999999999999999--------86167642999999
No 356
>COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=30.26 E-value=35 Score=15.34 Aligned_cols=35 Identities=11% Similarity=0.234 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHH
Q ss_conf 99999999986458313796788850455306899
Q gi|254780313|r 50 RSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84 (227)
Q Consensus 50 RaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQv 84 (227)
|--+=+.|+..+.++--+.-.-+-.+++||+||-+
T Consensus 40 ~l~~~i~~ll~~~~~~~~dld~Iav~~GPGSFTGl 74 (220)
T COG1214 40 RLMPMIDELLKEAGLSLQDLDAIAVAKGPGSFTGL 74 (220)
T ss_pred HHHHHHHHHHHHCCCCHHHCCEEEEECCCCCCHHH
T ss_conf 99999999998759997784889993089742238
No 357
>PRK10201 G/U mismatch-specific DNA glycosylase; Provisional
Probab=30.13 E-value=39 Score=15.03 Aligned_cols=23 Identities=35% Similarity=0.382 Sum_probs=19.8
Q ss_pred CCCCCCCEEEEEECCCCHHHHHH
Q ss_conf 83137967888504553068999
Q gi|254780313|r 63 QILQSNRRIVDLGSSPGSWSQVA 85 (227)
Q Consensus 63 ~l~k~g~~VlDLGaaPGgWsQva 85 (227)
+++.|+..||=+|-.||-||-..
T Consensus 4 D~l~p~L~vlF~GiNPgl~Sa~~ 26 (168)
T PRK10201 4 DILAPGLRVVFCGINPGLSSAGT 26 (168)
T ss_pred CCCCCCCEEEEEEECCCHHHHHC
T ss_conf 54589984899974978888853
No 358
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=30.13 E-value=40 Score=14.98 Aligned_cols=38 Identities=26% Similarity=0.467 Sum_probs=29.7
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEE-EECCCC
Q ss_conf 999998818447999999999864583137967888-504553
Q gi|254780313|r 38 YVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVD-LGSSPG 79 (227)
Q Consensus 38 y~~~Ak~~gyrsRaafKL~eId~kf~l~k~g~~VlD-LGaaPG 79 (227)
-+-.++-+|| |-|--|+.+-+||++ |--+++| =||.||
T Consensus 75 nfGm~~PeGY--RKA~Rlm~lAekf~~--PvitfIDTpGA~pg 113 (256)
T PRK12319 75 NFGQPHPEGY--RKALRLMKQAEKFGR--PVVTFINTAGAYPG 113 (256)
T ss_pred CCCCCCHHHH--HHHHHHHHHHHHHCC--CEEEEECCCCCCCC
T ss_conf 6999981799--999999999998099--87999607986788
No 359
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=30.01 E-value=43 Score=14.77 Aligned_cols=35 Identities=23% Similarity=0.305 Sum_probs=23.3
Q ss_pred EEECCCCHHHHHHHHHH-------HCCCCCCEEEECCCHHHC
Q ss_conf 83011220799999997-------313887489753202110
Q gi|254780313|r 114 FFKFDFLDLDSWEFIRQ-------AIGGNPDLVLSDMAYPTI 148 (227)
Q Consensus 114 ~~~gDi~~~~~~~~i~~-------~l~~~~DlVlSDmapn~S 148 (227)
-+-||..+.++.+..++ .++-..|+|.|||-|+..
T Consensus 422 Q~iGdls~~~t~~~~~ea~~~~~~~~~~~pd~i~cDlHP~y~ 463 (750)
T COG0068 422 QHIGDLSNLETLEFFREALRHFLKIYDFEPDYIVCDLHPNYN 463 (750)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf 012750024689999999999998716897648872576521
No 360
>cd01269 PLX Pollux (PLX) Phosphotyrosine-binding (PTB) domain. PLX is calmodulin-binding protein containing a TBC domain, which is conserved from yeast to man, but it only has an N-terminal PTB domain in mammals. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=29.79 E-value=35 Score=15.33 Aligned_cols=53 Identities=21% Similarity=0.442 Sum_probs=37.0
Q ss_pred ECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCC-CEEEEEEECCCCH---HHHHHHHHHHCCE
Q ss_conf 532021102221015788989998898764114877-4699993059998---9999999862584
Q gi|254780313|r 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIG-GDFLVKTFQGGTT---NDILCLLKKHFQK 202 (227)
Q Consensus 141 SDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~g-G~fV~K~F~G~~~---~~l~~~l~~~F~~ 202 (227)
.|++.-.-|++..||... ++.+...+| -.|||=+|+...+ ++++..++..|..
T Consensus 71 kdIs~C~QGik~~dHFGf---------iCRe~~~~g~~~yvcYVFkC~sesvadeim~tlkQAF~~ 127 (129)
T cd01269 71 KDIASCSHGIKHLDHFGF---------ICRELNEPGLDGYICYVFKCASEHLCDDIMAAIAQAFDT 127 (129)
T ss_pred HHHHHHHHCCCCCCCEEE---------EECCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHH
T ss_conf 066687605766501447---------861477778764799999828588999999999998652
No 361
>PRK06346 consensus
Probab=29.61 E-value=44 Score=14.72 Aligned_cols=112 Identities=11% Similarity=0.120 Sum_probs=58.8
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC--CC-------CC-CCCEEEECCCCHHHHHHHHHHHCC---
Q ss_conf 796788850455306899999706878832786411213--33-------46-981783011220799999997313---
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD--ME-------PI-LGVKFFKFDFLDLDSWEFIRQAIG--- 133 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~--~~-------~i-~gv~~~~gDi~~~~~~~~i~~~l~--- 133 (227)
.|.+||=-|++-| -=.-+++.....|- .|+-+|..+ .+ .. ..+.++++|+++++..+.+.+..-
T Consensus 4 ~gKv~lITGgs~G-IG~a~a~~la~~Ga--~V~i~~r~~e~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~i~~~~~~f 80 (251)
T PRK06346 4 KGKVAIVTGAASG-MGKSIAELFAKEGA--KVVVADLNLERAQKVVEEITSNGGTAIAVVANVTKQEDIENMVDTAVDTY 80 (251)
T ss_pred CCCEEEEECCCCH-HHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 9988999475788-99999999998799--89999798999999999999639908999778898999999999999982
Q ss_pred CCCCEEEECCCH--HHCCCCCCHHH---HHHHHHHHHH----HHHHHCC--CCCCEEEE
Q ss_conf 887489753202--11022210157---8898999889----8764114--87746999
Q gi|254780313|r 134 GNPDLVLSDMAY--PTIGHRKIDHL---RTMSLCEAAT----FFALEML--NIGGDFLV 181 (227)
Q Consensus 134 ~~~DlVlSDmap--n~SG~~~~D~~---~~~~L~~~al----~~A~~~L--k~gG~fV~ 181 (227)
++.|+++.-.+. +..-..+.|.. +.++++.... ..+...+ +.+|..|.
T Consensus 81 g~iDiLVnNAgi~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IIn 139 (251)
T PRK06346 81 GTLDILVNNAGIMDNFVPVGELTDELWDKVFAVNTTGVMRATRKALPIFEEKGSGVIVN 139 (251)
T ss_pred CCCCEEEECCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99979998998899998711289999999999970999999999999999859954999
No 362
>KOG1371 consensus
Probab=29.54 E-value=44 Score=14.72 Aligned_cols=71 Identities=20% Similarity=0.150 Sum_probs=39.1
Q ss_pred CEEEEEECC-CCHHHHHHHHHHCCCCCCEEEEEECCC---------CCC----CCCCCEEEECCCCHHHHHHHHHHHCCC
Q ss_conf 678885045-530689999970687883278641121---------333----469817830112207999999973138
Q gi|254780313|r 69 RRIVDLGSS-PGSWSQVAARITGSNANNTRVVAIDIL---------DME----PILGVKFFKFDFLDLDSWEFIRQAIGG 134 (227)
Q Consensus 69 ~~VlDLGaa-PGgWsQva~~~~~~~~~~~~VigVDl~---------~~~----~i~gv~~~~gDi~~~~~~~~i~~~l~~ 134 (227)
.+||=.|+| ==||--+ .++.. .+-.|+.||=+ +.+ +-.++.|+++|+.|....+++.+..
T Consensus 3 ~~VLVtGgaGyiGsht~-l~L~~---~gy~v~~vDNl~n~~~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~~-- 76 (343)
T KOG1371 3 KHVLVTGGAGYIGSHTV-LALLK---RGYGVVIVDNLNNSYLESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFSEV-- 76 (343)
T ss_pred CEEEEECCCCCEEHHHH-HHHHH---CCCCEEEEECCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHC--
T ss_conf 37999668763105999-99986---7981799824332124677889986278774389981566899999998633--
Q ss_pred CCCEEEECCCH
Q ss_conf 87489753202
Q gi|254780313|r 135 NPDLVLSDMAY 145 (227)
Q Consensus 135 ~~DlVlSDmap 145 (227)
++|-|+.=.|-
T Consensus 77 ~fd~V~Hfa~~ 87 (343)
T KOG1371 77 KFDAVMHFAAL 87 (343)
T ss_pred CCCEEEEEHHH
T ss_conf 88657762444
No 363
>PRK06500 short chain dehydrogenase; Provisional
Probab=29.45 E-value=44 Score=14.71 Aligned_cols=112 Identities=14% Similarity=0.134 Sum_probs=60.3
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC--CC----CC-CCCEEEECCCCHHHHHHHHHHHCC---CCC
Q ss_conf 796788850455306899999706878832786411213--33----46-981783011220799999997313---887
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD--ME----PI-LGVKFFKFDFLDLDSWEFIRQAIG---GNP 136 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~--~~----~i-~gv~~~~gDi~~~~~~~~i~~~l~---~~~ 136 (227)
.|.+||=.|++.|==...|.... ..|. .|+-+|..+ .+ .+ ..+.++++|+.+.+..+.+.+... ++.
T Consensus 5 ~gK~~lITGas~GIG~aiA~~la-~~Ga--~V~i~~r~~~~l~~~~~~l~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~i 81 (249)
T PRK06500 5 QGKTALITGGTSGIGLETARQFA-AEGA--RVAITGRDAATLEAARAELGEDALVIRNDAGSVAAQRALAQALAEAGGRL 81 (249)
T ss_pred CCCEEEEECCCCHHHHHHHHHHH-HCCC--EEEEEECCHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHCCCC
T ss_conf 99889993768789999999999-8799--99999699899999999858975999951799999999999999976999
Q ss_pred CEEEECCCHHHCC-CCCC---HHHHHHHHHHHH----HHHHHHCCCCCCEEEE
Q ss_conf 4897532021102-2210---157889899988----9876411487746999
Q gi|254780313|r 137 DLVLSDMAYPTIG-HRKI---DHLRTMSLCEAA----TFFALEMLNIGGDFLV 181 (227)
Q Consensus 137 DlVlSDmapn~SG-~~~~---D~~~~~~L~~~a----l~~A~~~Lk~gG~fV~ 181 (227)
|+++.-.+....+ ..+. |-...++++... +..+...++.+|..|.
T Consensus 82 DiLvnnAG~~~~~~~~~~~~e~w~~~~~vNl~~~f~~~~~~~p~m~~~g~iI~ 134 (249)
T PRK06500 82 DAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLNNPASIVL 134 (249)
T ss_pred CEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 89998998789999166999999999998645699999999998622981899
No 364
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=29.41 E-value=44 Score=14.70 Aligned_cols=115 Identities=15% Similarity=0.087 Sum_probs=59.4
Q ss_pred CCCEEEEEECCCC-HHHHHHHHHHCCCCCCEEEEEECCCC---------CCCCCCCEEEECCCCHHHHHHHHHHHCC---
Q ss_conf 7967888504553-06899999706878832786411213---------3346981783011220799999997313---
Q gi|254780313|r 67 SNRRIVDLGSSPG-SWSQVAARITGSNANNTRVVAIDILD---------MEPILGVKFFKFDFLDLDSWEFIRQAIG--- 133 (227)
Q Consensus 67 ~g~~VlDLGaaPG-gWsQva~~~~~~~~~~~~VigVDl~~---------~~~i~gv~~~~gDi~~~~~~~~i~~~l~--- 133 (227)
.|.++|=-|++.| |--.-+++.....|-+ |+-.+..+ .........+++|+.+++..+.+.....
T Consensus 5 ~GK~alVTGaa~~~GiG~aiA~~la~~GA~--V~i~~~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 82 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHREGAE--LAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDAMFAELGKVW 82 (262)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 998799989999725999999999987999--999827778999999999754982899888999999999999999983
Q ss_pred CCCCEEEECCCHHHCCCCCCHH---------HHHHHHHHH----HHHHHHHCCCCCCEEEEEE
Q ss_conf 8874897532021102221015---------788989998----8987641148774699993
Q gi|254780313|r 134 GNPDLVLSDMAYPTIGHRKIDH---------LRTMSLCEA----ATFFALEMLNIGGDFLVKT 183 (227)
Q Consensus 134 ~~~DlVlSDmapn~SG~~~~D~---------~~~~~L~~~----al~~A~~~Lk~gG~fV~K~ 183 (227)
+++|.++.-.+.......+.|+ ....+++.. ....+...+++||..|.=.
T Consensus 83 g~iD~lVnnag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~is 145 (262)
T PRK07984 83 PKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLS 145 (262)
T ss_pred CCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 877889995022763224631788860999999998878999999998887514797599995
No 365
>PRK06139 short chain dehydrogenase; Provisional
Probab=29.10 E-value=45 Score=14.67 Aligned_cols=144 Identities=17% Similarity=0.154 Sum_probs=72.7
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC--CC----CC----CCCEEEECCCCHHHHHHHHHHHC---C
Q ss_conf 796788850455306899999706878832786411213--33----46----98178301122079999999731---3
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD--ME----PI----LGVKFFKFDFLDLDSWEFIRQAI---G 133 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~--~~----~i----~gv~~~~gDi~~~~~~~~i~~~l---~ 133 (227)
.|.+||=-|++-|== .-+++.....|. +|+.+|... .+ .+ ..+..+..|+++.+..+.+.+.. -
T Consensus 5 ~gKvvlITGASsGIG-~aiA~~~A~~Ga--~Vvl~~R~~~~L~~~a~e~~~~G~~~~~v~~DVsd~~~v~~~~~~~~~~~ 81 (324)
T PRK06139 5 HGAVVVITGASSGIG-RATAEAFARRGA--RLVLAARDEEALFEVAEECRALGAEVLVVPTDVTHADQVQALATQAASFL 81 (324)
T ss_pred CCCEEEEECHHHHHH-HHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 997799938254999-999999998799--89999899999999999999549948999766788578999999999974
Q ss_pred CCCCEEEECCCHHHCCCC-CC---HHHHHHHHHHHHH----HHHHHCCCC--CCEEEEE--E--E-----CC--------
Q ss_conf 887489753202110222-10---1578898999889----876411487--7469999--3--0-----59--------
Q gi|254780313|r 134 GNPDLVLSDMAYPTIGHR-KI---DHLRTMSLCEAAT----FFALEMLNI--GGDFLVK--T--F-----QG-------- 186 (227)
Q Consensus 134 ~~~DlVlSDmapn~SG~~-~~---D~~~~~~L~~~al----~~A~~~Lk~--gG~fV~K--~--F-----~G-------- 186 (227)
+++|+++.-.+....|.- ++ |..+.++.+.... ..++..+++ .|.+|-= + + ++
T Consensus 82 G~IDiLVNNAGi~~~g~~~e~~~e~~~~vi~vNl~G~~~~~~aalp~M~~~g~G~IINisS~ag~~~~P~~saY~ASK~A 161 (324)
T PRK06139 82 GRIDVWFNNVGVGAVGRFEETPLEAHEQVIQTNLIGYLRDAHAALPIFKAQGHGIFINMISLGGFAAQPYAAAYSASKFG 161 (324)
T ss_pred CCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCHHHHHHHH
T ss_conf 99878864575577775355999999999999869999999999999986599189997363241369998419899999
Q ss_pred --CCHHHHHHHHHHH-CCEEEEECCCCCCC
Q ss_conf --9989999999862-58469976866575
Q gi|254780313|r 187 --GTTNDILCLLKKH-FQKVIHVKPVASRA 213 (227)
Q Consensus 187 --~~~~~l~~~l~~~-F~~V~~~KP~aSR~ 213 (227)
.-++.|...|..+ =-+|..+.|-.-+.
T Consensus 162 v~gftesLr~EL~~~~gI~Vt~V~Pg~v~T 191 (324)
T PRK06139 162 LRGFSEALRAELTDFPDIHVCDVYPAFVDT 191 (324)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEECCCCCC
T ss_conf 999999999983799891899985799588
No 366
>PRK06101 short chain dehydrogenase; Provisional
Probab=28.91 E-value=45 Score=14.65 Aligned_cols=109 Identities=13% Similarity=0.133 Sum_probs=57.8
Q ss_pred EEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC--C----CCCCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf 788850455306899999706878832786411213--3----3469817830112207999999973138874897532
Q gi|254780313|r 70 RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD--M----EPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDM 143 (227)
Q Consensus 70 ~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~--~----~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDm 143 (227)
+||=.|++-|==...|.+.. ..| .+|+.+|..+ . +...++..++.|+++.+........+....|+++.-.
T Consensus 3 tvlITGassGIG~a~A~~la-~~G--~~Vi~~~R~~~~l~~~~~~~~~~~~~~~Dvtd~~~~~~~~~~~~~~~d~~i~na 79 (241)
T PRK06101 3 SVLITGATSGIGKQLALDYA-KAG--WKVIACGRNEAVLDELHDQSSNIFTLAFDVTDYEETKAALSQLPFIPELWIFNA 79 (241)
T ss_pred EEEEECCCHHHHHHHHHHHH-HCC--CEEEEEECCHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHCCCCCEEEECC
T ss_conf 89992240499999999999-879--989999899999999997328804898522679999999997187777899988
Q ss_pred CHH-HCCCCCCHH---HHHHHHHHHH----HHHHHHCCCCCCEEEE
Q ss_conf 021-102221015---7889899988----9876411487746999
Q gi|254780313|r 144 AYP-TIGHRKIDH---LRTMSLCEAA----TFFALEMLNIGGDFLV 181 (227)
Q Consensus 144 apn-~SG~~~~D~---~~~~~L~~~a----l~~A~~~Lk~gG~fV~ 181 (227)
+.. .......|. .+.++++... +..+...+++||..|.
T Consensus 80 G~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~m~~~~~iv~ 125 (241)
T PRK06101 80 GDCEYMDDGIVDAQLMARVFNVNVVGVANCIEACQPHFQRGHRVVI 125 (241)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 6667687344899999999999889999999999999873895057
No 367
>PRK05717 oxidoreductase; Validated
Probab=28.74 E-value=45 Score=14.63 Aligned_cols=111 Identities=14% Similarity=0.090 Sum_probs=58.5
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC--C----CCC-CCCEEEECCCCHHHHHHHH----HHHCCCC
Q ss_conf 796788850455306899999706878832786411213--3----346-9817830112207999999----9731388
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD--M----EPI-LGVKFFKFDFLDLDSWEFI----RQAIGGN 135 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~--~----~~i-~gv~~~~gDi~~~~~~~~i----~~~l~~~ 135 (227)
.|.++|=-|++-|==.. +++.....|. .|+-.|... . +.+ ..+.++++|+++++..+.. .+.+ ++
T Consensus 9 ~GKvalITG~s~GIG~a-ia~~la~~Ga--~V~i~~~~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~i~~~~~~~-G~ 84 (255)
T PRK05717 9 NGRVALVTGAARGIGLG-IAAWLIAEGW--QVVLADLDRERGAKVAKALGENAWFIAMDVADEAQVAAGVAEVLGQF-GR 84 (255)
T ss_pred CCCEEEEECCCCHHHHH-HHHHHHHCCC--EEEEEECCHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHH-CC
T ss_conf 99889995878889999-9999998799--89999698899999999848975899930799999999999999982-99
Q ss_pred CCEEEECCCHHH---CCCCCCH---HHHHHHHHHHHH----HHHHHCC-CCCCEEEE
Q ss_conf 748975320211---0222101---578898999889----8764114-87746999
Q gi|254780313|r 136 PDLVLSDMAYPT---IGHRKID---HLRTMSLCEAAT----FFALEML-NIGGDFLV 181 (227)
Q Consensus 136 ~DlVlSDmapn~---SG~~~~D---~~~~~~L~~~al----~~A~~~L-k~gG~fV~ 181 (227)
.|++++-.+... .-..+.+ -...++++.... ..+...| ..+|..|.
T Consensus 85 id~lvnNAg~~~~~~~~l~~~~~~~w~~~~~vNl~g~f~~~k~~~~~m~~~~G~IIn 141 (255)
T PRK05717 85 LDALVCNAAIANPHNTTLESLSLAQWNRVLAVNLGGPMLLAKHCAPYLRAHNGAIVN 141 (255)
T ss_pred CCEEEECCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCEEE
T ss_conf 989998773057899983559999999999986042657766431988747998699
No 368
>PRK08589 short chain dehydrogenase; Validated
Probab=28.15 E-value=46 Score=14.56 Aligned_cols=112 Identities=22% Similarity=0.278 Sum_probs=60.4
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC-----CC----CCCCEEEECCCCHHHHHHHHHHHCC---C
Q ss_conf 7967888504553068999997068788327864112133-----34----6981783011220799999997313---8
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM-----EP----ILGVKFFKFDFLDLDSWEFIRQAIG---G 134 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~-----~~----i~gv~~~~gDi~~~~~~~~i~~~l~---~ 134 (227)
.|.++|=-|++-|== .-+++.....| .+|+..|+.+- +. -..+.+++.|+++++..+.+.+... +
T Consensus 5 ~gKvalVTGas~GIG-~aiA~~la~~G--a~Vv~~d~~~~~~~~~~~i~~~g~~~~~~~~Dvsd~~~v~~~v~~~~~~~G 81 (272)
T PRK08589 5 ENKVAVITGASTGIG-QASAIALAQEG--AYVLAVDIAEAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASDIKEQFG 81 (272)
T ss_pred CCCEEEEECCCCHHH-HHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHC
T ss_conf 979899978256999-99999999869--999998382789999999995599489999607999999999999999829
Q ss_pred CCCEEEECCCH-HHCC-CCCCHH---HHHHHHHHHHHHH----HHH-CCCCCCEEEE
Q ss_conf 87489753202-1102-221015---7889899988987----641-1487746999
Q gi|254780313|r 135 NPDLVLSDMAY-PTIG-HRKIDH---LRTMSLCEAATFF----ALE-MLNIGGDFLV 181 (227)
Q Consensus 135 ~~DlVlSDmap-n~SG-~~~~D~---~~~~~L~~~al~~----A~~-~Lk~gG~fV~ 181 (227)
+.|+++.-.+. +..| ..+.+. .+.++++.....+ +.. +.+.||..|.
T Consensus 82 ~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~f~~~~~~~p~m~~~gG~IVn 138 (272)
T PRK08589 82 HIDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQGGSIIN 138 (272)
T ss_pred CCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 987899898667888871009999999999998299999999999999975990799
No 369
>TIGR03120 one_C_mch methenyltetrahydromethanopterin cyclohydrolase. Members of this protein family are the enzyme methenyltetrahydromethanopterin cyclohydrolase, a key enzyme for tetrahydromethanopterin (H4MPT)-linked C1 transfer metabolism.
Probab=27.86 E-value=47 Score=14.53 Aligned_cols=35 Identities=26% Similarity=0.536 Sum_probs=22.8
Q ss_pred HHHHHHHCCC----CCCCCEEEEEE-CCCCHHHH--HHHHHH
Q ss_conf 9999864583----13796788850-45530689--999970
Q gi|254780313|r 55 LLQINEKHQI----LQSNRRIVDLG-SSPGSWSQ--VAARIT 89 (227)
Q Consensus 55 L~eId~kf~l----~k~g~~VlDLG-aaPGgWsQ--va~~~~ 89 (227)
|++--+.+++ +.+|-+|+|+| .+||||-- ..++.+
T Consensus 13 li~~aeeL~i~v~~l~nGatviD~Gv~~~Gs~eAG~l~aeIc 54 (312)
T TIGR03120 13 MIRNAEKLRVEVAKLENGATVIDCGVNVPGSLEAGLLFAEVC 54 (312)
T ss_pred HHHHHHHHCCEEEECCCCCEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 984699719279984899789974767887189999999998
No 370
>PRK13774 formimidoylglutamase; Provisional
Probab=27.54 E-value=47 Score=14.50 Aligned_cols=10 Identities=30% Similarity=0.567 Sum_probs=4.5
Q ss_pred CCCEEEEEEC
Q ss_conf 7967888504
Q gi|254780313|r 67 SNRRIVDLGS 76 (227)
Q Consensus 67 ~g~~VlDLGa 76 (227)
+...++|+|-
T Consensus 85 ~~~~i~D~Gd 94 (311)
T PRK13774 85 QCETLVDYGN 94 (311)
T ss_pred CCCEEEECCC
T ss_conf 6775565787
No 371
>pfam02254 TrkA_N TrkA-N domain. This domain is found in a wide variety of proteins. These protein include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD.
Probab=27.40 E-value=48 Score=14.48 Aligned_cols=88 Identities=20% Similarity=0.112 Sum_probs=52.7
Q ss_pred CCHHHHHHHHHHCCCCCCEEEEEECCCC--CCC--CCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCC
Q ss_conf 5306899999706878832786411213--334--698178301122079999999731388748975320211022210
Q gi|254780313|r 78 PGSWSQVAARITGSNANNTRVVAIDILD--MEP--ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKI 153 (227)
Q Consensus 78 PGgWsQva~~~~~~~~~~~~VigVDl~~--~~~--i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~ 153 (227)
=|-..+.+++.....+ .|+.||..+ ++. -.|...+.||.+++++.... --.++|.|++.+ +
T Consensus 6 ~g~~G~~la~~L~~~~---~v~vId~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a---~i~~a~~vi~~~-----~---- 70 (115)
T pfam02254 6 YGRVGRSLAEELREGG---PVVVIDKDPERVEELREEGVPVVVGDATDEEVLEEA---GIEDADAVVAAT-----G---- 70 (115)
T ss_pred CCHHHHHHHHHHHHCC---CEEEEECCHHHHHHHHHCCCEEEEEECCCHHHHHHH---CCCCCCEEEEEC-----C----
T ss_conf 8889999999998089---999999987998778866986999956886678761---920287999962-----9----
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEC
Q ss_conf 15788989998898764114877469999305
Q gi|254780313|r 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185 (227)
Q Consensus 154 D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~ 185 (227)
|....+.++.. .+-+.+....++++-.
T Consensus 71 ~d~~n~~~~~~-----~r~~~~~~~iiar~~~ 97 (115)
T pfam02254 71 DDEANILIVLL-----ARELNPAKKIIARAND 97 (115)
T ss_pred CHHHHHHHHHH-----HHHHCCCCEEEEEECC
T ss_conf 84999999999-----9997899809999878
No 372
>PRK07479 consensus
Probab=27.21 E-value=48 Score=14.46 Aligned_cols=112 Identities=15% Similarity=0.104 Sum_probs=59.6
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CC-CCCCCEEEECCCCHHHHHHHHHHHCC---
Q ss_conf 796788850455306899999706878832786411213---------33-46981783011220799999997313---
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------ME-PILGVKFFKFDFLDLDSWEFIRQAIG--- 133 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~-~i~gv~~~~gDi~~~~~~~~i~~~l~--- 133 (227)
.|.++|=-|++-|==...|.. ....|. .|+-.|..+ +. .-..+.++++|+++++..+.+.+...
T Consensus 4 ~gK~alITGgs~GIG~a~a~~-la~~G~--~V~i~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 80 (252)
T PRK07479 4 SGKVAIVTGAGSGFGEGIAKR-FAREGA--KVVVADLNAAAAERVASEIADAGGNAIAVAADVSRGADVEALVEAALEAF 80 (252)
T ss_pred CCCEEEEECCCCHHHHHHHHH-HHHCCC--EEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 998899938876899999999-998799--99999798999999999998539978999925899999999999999981
Q ss_pred CCCCEEEECCCHH-HCC-CCCCHH---HHHHHHHHHHH----HHHHHCCC--CCCEEEE
Q ss_conf 8874897532021-102-221015---78898999889----87641148--7746999
Q gi|254780313|r 134 GNPDLVLSDMAYP-TIG-HRKIDH---LRTMSLCEAAT----FFALEMLN--IGGDFLV 181 (227)
Q Consensus 134 ~~~DlVlSDmapn-~SG-~~~~D~---~~~~~L~~~al----~~A~~~Lk--~gG~fV~ 181 (227)
++.|+++.-.+.. ..+ ..+.+. ...++++.... ..+...++ .+|.+|.
T Consensus 81 G~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~~~G~Iv~ 139 (252)
T PRK07479 81 GRVDIVVNNAGTTHRNKPMLDVTEAEFDRVYAVNVKSIYLSTRHFVPHFRAQGGGVIIN 139 (252)
T ss_pred CCCCEEEECCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99859998997668998827699999999999986310565444049898679972999
No 373
>PRK07326 short chain dehydrogenase; Provisional
Probab=27.09 E-value=48 Score=14.45 Aligned_cols=111 Identities=15% Similarity=0.174 Sum_probs=58.9
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCC--CC----CCC--CCCEEEECCCCHHHHHHHHH----HHCCC
Q ss_conf 79678885045530689999970687883278641121--33----346--98178301122079999999----73138
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL--DM----EPI--LGVKFFKFDFLDLDSWEFIR----QAIGG 134 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~--~~----~~i--~gv~~~~gDi~~~~~~~~i~----~~l~~ 134 (227)
+|.++|=-|++-|== .-+++.....|. +|+.+|.. .. +.+ .++..+++|+++.+..+.+. +.+ +
T Consensus 4 ~GKvalITGas~GIG-~aiA~~la~~Ga--~V~i~~r~~~~l~~~~~~l~~~~~~~~~~Dv~d~~~v~~~v~~~~~~~-G 79 (235)
T PRK07326 4 NGKAALVTGGSKGIG-FAVAEALAAAGY--RVAICARDESELEAAAQELGKRNVLGLACDVRDEADVRQAVDAHVEAF-G 79 (235)
T ss_pred CCCEEEEECCCCHHH-HHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHC-C
T ss_conf 998999938267999-999999998799--999998988999999998423986999963899999999999999982-9
Q ss_pred CCCEEEECCCHHHCCC-CCC---HHHHHHHHHHHHHHH----HHHCC--CCCCEEEE
Q ss_conf 8748975320211022-210---157889899988987----64114--87746999
Q gi|254780313|r 135 NPDLVLSDMAYPTIGH-RKI---DHLRTMSLCEAATFF----ALEML--NIGGDFLV 181 (227)
Q Consensus 135 ~~DlVlSDmapn~SG~-~~~---D~~~~~~L~~~al~~----A~~~L--k~gG~fV~ 181 (227)
+.|+++.-.+-...|. .+. |-.+.++++.....+ ++..+ +.+|..|.
T Consensus 80 ~iDiLVNNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Iin 136 (235)
T PRK07326 80 GLDILVNNAGVGHFAPVEELTLEEWRLVIDTNLTGAFYTIKAAVPALLKRGGGYIVN 136 (235)
T ss_pred CCEEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 966999888778998826599999999999987999999999999999719988999
No 374
>KOG1201 consensus
Probab=26.89 E-value=49 Score=14.42 Aligned_cols=113 Identities=18% Similarity=0.215 Sum_probs=65.2
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC------CCCCC---CCEEEECCCCHHHHHHHHHHHCC---C
Q ss_conf 796788850455306899999706878832786411213------33469---81783011220799999997313---8
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD------MEPIL---GVKFFKFDFLDLDSWEFIRQAIG---G 134 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~------~~~i~---gv~~~~gDi~~~~~~~~i~~~l~---~ 134 (227)
.|..||=-|++-|===+.|.+... .+.+++-.|++. .+.+. .++.++.|+.+.+-.....+.+. |
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~---rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~e~G 113 (300)
T KOG1201 37 SGEIVLITGGGSGLGRLIALEFAK---RGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKKEVG 113 (300)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHH---HCCEEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHCC
T ss_conf 698899968986078999999997---07848999556512399999998448525899558988999999999998619
Q ss_pred CCCEEEECCC--HHHCCCCCCHHH--HHHHHHHHH-----HHHHHHCCC-CCCEEEEE
Q ss_conf 8748975320--211022210157--889899988-----987641148-77469999
Q gi|254780313|r 135 NPDLVLSDMA--YPTIGHRKIDHL--RTMSLCEAA-----TFFALEMLN-IGGDFLVK 182 (227)
Q Consensus 135 ~~DlVlSDma--pn~SG~~~~D~~--~~~~L~~~a-----l~~A~~~Lk-~gG~fV~K 182 (227)
.+|+++.-++ |..+.....|+. ++++.+..+ -.|.-..+. ..|+.|+=
T Consensus 114 ~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~~GHIV~I 171 (300)
T KOG1201 114 DVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENNNGHIVTI 171 (300)
T ss_pred CCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 9549983664244887567998999999987668999999987388874579639983
No 375
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=26.48 E-value=49 Score=14.43 Aligned_cols=158 Identities=9% Similarity=0.061 Sum_probs=65.8
Q ss_pred HHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCC-C-CCCC----CCC-EE
Q ss_conf 988184479999999998645831379678885045530689999970687883278641121-3-3346----981-78
Q gi|254780313|r 42 AQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL-D-MEPI----LGV-KF 114 (227)
Q Consensus 42 Ak~~gyrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~-~-~~~i----~gv-~~ 114 (227)
=+.+||....|.--.|--+.+.--.+.-.+||+.---+.-.+++.+. ......+ |+-+.-. . -+.+ .|+ .+
T Consensus 20 L~~~g~~V~~a~~g~~al~~~~~~~~DlvilDi~lP~~dG~~l~~~i-R~~~~~p-II~lta~~~~~d~i~~l~~GADDY 97 (223)
T PRK11517 20 LSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQILQTL-RTAKQTP-VICLTARDSVDDRVRGLDSGANDY 97 (223)
T ss_pred HHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHH-HHCCCCC-EEEEECCCCHHHHHHHHHCCCCEE
T ss_conf 99889999998999999999852899999984999873689999999-8568864-899956556578999998398776
Q ss_pred EECCCCHHHHHHHHHHHCCCC----CCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE------EE
Q ss_conf 301122079999999731388----74897532021102221015788989998898764114877469999------30
Q gi|254780313|r 115 FKFDFLDLDSWEFIRQAIGGN----PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK------TF 184 (227)
Q Consensus 115 ~~gDi~~~~~~~~i~~~l~~~----~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K------~F 184 (227)
+.--|.-.+....|...+... ..+-+.|...|.....-.-....+.|......+..-+++..|..|.+ +|
T Consensus 98 l~KPf~~~EL~aRi~a~lrr~~~~~~~~~~~~l~ld~~~~~v~~~~~~i~LT~~E~~LL~~L~~~~g~vvsre~l~~~vw 177 (223)
T PRK11517 98 LVKPFSFSELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 (223)
T ss_pred EECCCCHHHHHHHHHHHHCCCCCCCCCEEECCEEEEHHHEEEEECCEEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHC
T ss_conf 20897789999999999641457787179887898001318962998982999999999999868998598999999962
Q ss_pred C----C--CCHHHHHHHHHHHCC
Q ss_conf 5----9--998999999986258
Q gi|254780313|r 185 Q----G--GTTNDILCLLKKHFQ 201 (227)
Q Consensus 185 ~----G--~~~~~l~~~l~~~F~ 201 (227)
. + ......+..+++..+
T Consensus 178 g~~~~~~~~~idv~I~rLRkKl~ 200 (223)
T PRK11517 178 GINFDSDTNTVDVAIRRLRAKVD 200 (223)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 98878885879999999999857
No 376
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain; InterPro: IPR013476 Methylamine dehydrogenase is a periplasmic enzyme found in Gram-negative methylotrophs . It is induced when grown on methylamine as a growth substrate and catalyses the oxidative deamination of primary amines to their corresponding aldehydes. ; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0042597 periplasmic space.
Probab=26.47 E-value=12 Score=18.17 Aligned_cols=11 Identities=55% Similarity=1.081 Sum_probs=5.2
Q ss_pred CCCHHHHHHHH
Q ss_conf 55306899999
Q gi|254780313|r 77 SPGSWSQVAAR 87 (227)
Q Consensus 77 aPGgWsQva~~ 87 (227)
.||||-|||-.
T Consensus 254 rPGGWQ~vAyH 264 (360)
T TIGR02658 254 RPGGWQQVAYH 264 (360)
T ss_pred CCCCCCEEEEE
T ss_conf 77873225677
No 377
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=26.21 E-value=22 Score=16.55 Aligned_cols=18 Identities=28% Similarity=0.433 Sum_probs=9.2
Q ss_pred CCCCEEEEEECCCCHHHH
Q ss_conf 379678885045530689
Q gi|254780313|r 66 QSNRRIVDLGSSPGSWSQ 83 (227)
Q Consensus 66 k~g~~VlDLGaaPGgWsQ 83 (227)
|||..|+||.++-||=++
T Consensus 272 kpGSViVDlAa~~GGNce 289 (356)
T COG3288 272 KPGSVIVDLAAETGGNCE 289 (356)
T ss_pred CCCCEEEEEHHHCCCCCC
T ss_conf 899689981322289865
No 378
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=26.02 E-value=50 Score=14.33 Aligned_cols=33 Identities=18% Similarity=-0.023 Sum_probs=14.6
Q ss_pred HHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEC
Q ss_conf 818447999999999864583137967888504
Q gi|254780313|r 44 LEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76 (227)
Q Consensus 44 ~~gyrsRaafKL~eId~kf~l~k~g~~VlDLGa 76 (227)
.+||.-..|.--.|-.+.+.--.+.-.+||+.-
T Consensus 22 ~~g~~V~~a~~g~~a~~~~~~~~~DlvilDi~l 54 (219)
T PRK10336 22 KMGFSVDWFTQGRQGKEALYSAPYDAVILDLTL 54 (219)
T ss_pred HCCCEEEEECCHHHHHHHHHCCCCCEEEEECCC
T ss_conf 879999998999999999862896999997999
No 379
>pfam11775 CobT_C Cobalamin biosynthesis protein CobT VWA domain. This family consists of several bacterial cobalamin biosynthesis (CobT) proteins. CobT is involved in the transformation of precorrin-3 into cobyrinic acid.
Probab=25.76 E-value=38 Score=15.09 Aligned_cols=11 Identities=36% Similarity=0.162 Sum_probs=9.1
Q ss_pred CCCEEEECCCH
Q ss_conf 87489753202
Q gi|254780313|r 135 NPDLVLSDMAY 145 (227)
Q Consensus 135 ~~DlVlSDmap 145 (227)
+.=.|+||+||
T Consensus 137 kILmViSDGaP 147 (220)
T pfam11775 137 KILLMISDGAP 147 (220)
T ss_pred EEEEEECCCCC
T ss_conf 69999758996
No 380
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=25.64 E-value=48 Score=14.44 Aligned_cols=14 Identities=14% Similarity=0.223 Sum_probs=7.8
Q ss_pred CHHHHHHHHHHHCC
Q ss_conf 20799999997313
Q gi|254780313|r 120 LDLDSWEFIRQAIG 133 (227)
Q Consensus 120 ~~~~~~~~i~~~l~ 133 (227)
..++.+..+...+.
T Consensus 244 L~~~~Q~kLl~~L~ 257 (469)
T PRK10923 244 MPLDVQTRLLRVLA 257 (469)
T ss_pred CCHHHHHHHHHHHH
T ss_conf 89999999999985
No 381
>TIGR00841 bass bile acid transporter; InterPro: IPR004710 Functionally characterised members of the bile Acid:Na+ Symporter (BASS) family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants and bacteria. ; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0015711 organic anion transport, 0016021 integral to membrane.
Probab=25.61 E-value=21 Score=16.77 Aligned_cols=16 Identities=19% Similarity=0.370 Sum_probs=10.7
Q ss_pred EEEEECCCCHHHHHHH
Q ss_conf 8885045530689999
Q gi|254780313|r 71 IVDLGSSPGSWSQVAA 86 (227)
Q Consensus 71 VlDLGaaPGgWsQva~ 86 (227)
|+=+||+|||=.=++.
T Consensus 114 ~~i~gccPGG~aSNv~ 129 (374)
T TIGR00841 114 VLIVGCCPGGTASNVF 129 (374)
T ss_pred HHHHHCCCCCCHHHHH
T ss_conf 5664138986289999
No 382
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=25.60 E-value=51 Score=14.28 Aligned_cols=33 Identities=24% Similarity=0.235 Sum_probs=21.4
Q ss_pred CCCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEECCC
Q ss_conf 4698178301122079999999731388748975320
Q gi|254780313|r 108 PILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144 (227)
Q Consensus 108 ~i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDma 144 (227)
+-+.+.|+.|||.|.+....+. . .+|+|++=+|
T Consensus 51 ~~~~i~f~~gDIrD~~~l~~~~---~-~vD~VfHaAA 83 (324)
T TIGR03589 51 PAPCLRFFIGDVRDKERLTRAL---R-GVDYVVHAAA 83 (324)
T ss_pred CCCCEEEEECCCCCHHHHHHHH---C-CCCEEEECCC
T ss_conf 8987599967777889999763---4-8889999462
No 383
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=25.06 E-value=53 Score=14.21 Aligned_cols=79 Identities=16% Similarity=0.098 Sum_probs=47.0
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC----------CC-CCCCEEEECCCCHHHHHHHHHHHCC--
Q ss_conf 7967888504553068999997068788327864112133----------34-6981783011220799999997313--
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM----------EP-ILGVKFFKFDFLDLDSWEFIRQAIG-- 133 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~----------~~-i~gv~~~~gDi~~~~~~~~i~~~l~-- 133 (227)
.|.++|=.|++-|==...|..+ ...| ..|+-.|...- .. -..+.++++|+++++..+.+.+...
T Consensus 4 ~gK~~lITGgs~GIG~aia~~l-a~~G--~~Vii~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlt~~~~v~~~~~~~~~~ 80 (248)
T PRK05557 4 EGKVALVTGASRGIGRAIAERL-AAQG--ANVVLNYASSEAGAEALVAEIGALGGKALAVQGDVADAESIERAVDEAKAE 80 (248)
T ss_pred CCCEEEEECCCCHHHHHHHHHH-HHCC--CEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 9988999489768999999999-9879--989999698565899999999963995899990389999999999999998
Q ss_pred -CCCCEEEECCCHHHC
Q ss_conf -887489753202110
Q gi|254780313|r 134 -GNPDLVLSDMAYPTI 148 (227)
Q Consensus 134 -~~~DlVlSDmapn~S 148 (227)
++.|+++.-.+....
T Consensus 81 ~g~iD~linnAg~~~~ 96 (248)
T PRK05557 81 FGGVDILVNNAGITRD 96 (248)
T ss_pred CCCCCEEEECCCCCCC
T ss_conf 2997199989977999
No 384
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=24.80 E-value=53 Score=14.18 Aligned_cols=158 Identities=10% Similarity=0.082 Sum_probs=63.0
Q ss_pred HHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEEC-CCCC-CCC----CCC-EEE
Q ss_conf 881844799999999986458313796788850455306899999706878832786411-2133-346----981-783
Q gi|254780313|r 43 QLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID-ILDM-EPI----LGV-KFF 115 (227)
Q Consensus 43 k~~gyrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVD-l~~~-~~i----~gv-~~~ 115 (227)
.++||....|.--.|-.+.+.--.+.-.+||+.---+...+++.+ +...+...-|+-+- .... +.+ .|+ .++
T Consensus 21 ~~~G~~v~~a~~g~~a~~~~~~~~~DlvilDi~lP~~~G~~l~~~-iR~~~~~~PII~Lta~~~~~d~i~~l~~GADDYl 99 (226)
T PRK09836 21 TEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDIVRM-LRSANKGMPILLLTALGTIEHRVKGLELGADDYL 99 (226)
T ss_pred HHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHH-HHHHCCCCEEEEEECCCCHHHHHHHHHCCCCEEE
T ss_conf 878999999899999999985189999998899999987204356-7761679609999445898899999976996886
Q ss_pred ECCCCHHHHHHHHHHHCCCC------CCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE------E
Q ss_conf 01122079999999731388------74897532021102221015788989998898764114877469999------3
Q gi|254780313|r 116 KFDFLDLDSWEFIRQAIGGN------PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK------T 183 (227)
Q Consensus 116 ~gDi~~~~~~~~i~~~l~~~------~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K------~ 183 (227)
.--|.-.+....|...+... ..+.+.|...|.....-.-.-..+.|......+..-++...|..|.+ +
T Consensus 100 ~KPf~~~EL~aRi~allrr~~~~~~~~~~~~~~l~~d~~~~~v~~~g~~v~LT~~E~~lL~~L~~~~g~vvsre~l~~~v 179 (226)
T PRK09836 100 VKPFAFAELLARVRTLLRRGAAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 (226)
T ss_pred ECCCCHHHHHHHHHHHHCCCCCCCCCCEEEECCEEEECCCEEEEECCEEEECCHHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 36876799999999996626666776507987799851411898899998568899999999986899648799999996
Q ss_pred ECC----C--CHHHHHHHHHHHCC
Q ss_conf 059----9--98999999986258
Q gi|254780313|r 184 FQG----G--TTNDILCLLKKHFQ 201 (227)
Q Consensus 184 F~G----~--~~~~l~~~l~~~F~ 201 (227)
|.. . .....+..+++..+
T Consensus 180 w~~~~~~~~~~vdv~I~rLR~Kl~ 203 (226)
T PRK09836 180 WDMNFDSDTNAIDVAVKRLRGKID 203 (226)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 288878885889999999999857
No 385
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=24.36 E-value=49 Score=14.38 Aligned_cols=52 Identities=15% Similarity=0.205 Sum_probs=40.6
Q ss_pred HHHHHHCCHHHHHHHHHHHHHHCCC-CCCCCEEEEEECCCCHHHHHHHHHHCC
Q ss_conf 9998818447999999999864583-137967888504553068999997068
Q gi|254780313|r 40 QRAQLEGWRARSAYKLLQINEKHQI-LQSNRRIVDLGSSPGSWSQVAARITGS 91 (227)
Q Consensus 40 ~~Ak~~gyrsRaafKL~eId~kf~l-~k~g~~VlDLGaaPGgWsQva~~~~~~ 91 (227)
.++++.+|-+|..|+.+-.++.... -+=+.+|+++|..=|+-++-++++.|-
T Consensus 191 ~~~~~~~~~~~~~f~~ig~~~l~~~~~~l~~~i~~~g~~vg~Lt~e~A~~lGL 243 (544)
T COG1069 191 WLEHEGGLWSADFFDKIGLDDLRELDSKLPEDIVPAGEPVGGLTPEAAQELGL 243 (544)
T ss_pred EECCCCCCCCHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHCC
T ss_conf 20323478878899754934542146668865203776566569999998389
No 386
>KOG2352 consensus
Probab=24.35 E-value=54 Score=14.13 Aligned_cols=131 Identities=18% Similarity=0.248 Sum_probs=72.7
Q ss_pred CCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC--C-CCCCCEEEECCCCH---HHHHHHHHHHCC-----CCC
Q ss_conf 967888504553068999997068788327864112133--3-46981783011220---799999997313-----887
Q gi|254780313|r 68 NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM--E-PILGVKFFKFDFLD---LDSWEFIRQAIG-----GNP 136 (227)
Q Consensus 68 g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~--~-~i~gv~~~~gDi~~---~~~~~~i~~~l~-----~~~ 136 (227)
...|+.||+ |+..++..--.+ .-.|.+|-+-|. + +-....|.+-|-.+ .+-.+.+++..+ -.+
T Consensus 298 ~~lvvg~gg--G~l~sfl~~~~p----~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~ 371 (482)
T KOG2352 298 KQLVVGLGG--GGLPSFLHMSLP----KFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICP 371 (482)
T ss_pred CEEEEECCC--CCCCCCEEEECC----CCCEEEEEECHHHHHCCHHHHCHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCC
T ss_conf 579983287--754002002057----34115999781684055765253565522003730359999986156446687
Q ss_pred CEEEECC-CHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE-CCCCH-HHHHHHHHHHCCEEEEEC
Q ss_conf 4897532-02110222101578898999889876411487746999930-59998-999999986258469976
Q gi|254780313|r 137 DLVLSDM-AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF-QGGTT-NDILCLLKKHFQKVIHVK 207 (227)
Q Consensus 137 DlVlSDm-apn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F-~G~~~-~~l~~~l~~~F~~V~~~K 207 (227)
|+++-|- +++ + +-....-+.-++..+|--+...|.|.|-|++-+- +.+.+ .+++..++..|...+..+
T Consensus 372 dvl~~dvds~d-~--~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~~~~~~~~~~l~~vf~~l~~~~ 442 (482)
T KOG2352 372 DVLMVDVDSKD-S--HGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNSSFKDEVLMNLAKVFPQLYHHQ 442 (482)
T ss_pred CEEEEECCCCC-C--CCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 57999778998-5--66728964787899988776106866348998753884231999975643237776343
No 387
>KOG2811 consensus
Probab=24.30 E-value=54 Score=14.13 Aligned_cols=38 Identities=21% Similarity=0.257 Sum_probs=27.6
Q ss_pred HHHHHHHCCCC-CCCCEEEEEECCCCHHHHHHHHHHCCC
Q ss_conf 99998645831-379678885045530689999970687
Q gi|254780313|r 55 LLQINEKHQIL-QSNRRIVDLGSSPGSWSQVAARITGSN 92 (227)
Q Consensus 55 L~eId~kf~l~-k~g~~VlDLGaaPGgWsQva~~~~~~~ 92 (227)
|++.-+.-++| .|+..++++||+-|-.+++++......
T Consensus 169 llg~lE~~~~l~~~~~~~vEFGAGrg~Ls~~vs~~l~~~ 207 (420)
T KOG2811 169 LLGHLEELGLLTAPSSCFVEFGAGRGELSRWVSDCLQIQ 207 (420)
T ss_pred HHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCC
T ss_conf 876787535667876258996687028999999985346
No 388
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=24.25 E-value=54 Score=14.12 Aligned_cols=68 Identities=18% Similarity=0.311 Sum_probs=35.5
Q ss_pred CCCCCEEEEC-CCHHHCCCCCCHHHHHHHH-----H---HHHHHHHHHCCCCCC-EEEEEEECCCCHHHHHHHHHHHCCE
Q ss_conf 3887489753-2021102221015788989-----9---988987641148774-6999930599989999999862584
Q gi|254780313|r 133 GGNPDLVLSD-MAYPTIGHRKIDHLRTMSL-----C---EAATFFALEMLNIGG-DFLVKTFQGGTTNDILCLLKKHFQK 202 (227)
Q Consensus 133 ~~~~DlVlSD-mapn~SG~~~~D~~~~~~L-----~---~~al~~A~~~Lk~gG-~fV~K~F~G~~~~~l~~~l~~~F~~ 202 (227)
...+|+|+.| ..|+.+|.......+...- . ......+...++-|- -||.|-+. .++++..++..+..
T Consensus 45 ~~~pdlvllDi~mP~~~G~e~l~~l~~~~p~~~vivlT~~~~~~~~~~al~~GA~gyl~K~~~---~~~L~~aI~~~l~~ 121 (202)
T PRK09390 45 GLRFGCVVTDVRMPGIDGIELLRRLKARGSPLPVIVMTGHGDVPLAVEAMKLGAIDFIEKPFE---DERLIGAIERALAQ 121 (202)
T ss_pred CCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHCCCHHHCCCCCC---HHHHHHHHHHHHHH
T ss_conf 579799987799999896079999872289986799974574888899998294644559999---99999999999971
Q ss_pred E
Q ss_conf 6
Q gi|254780313|r 203 V 203 (227)
Q Consensus 203 V 203 (227)
.
T Consensus 122 ~ 122 (202)
T PRK09390 122 A 122 (202)
T ss_pred C
T ss_conf 5
No 389
>COG3252 Methenyltetrahydromethanopterin cyclohydrolase [Coenzyme metabolism]
Probab=24.24 E-value=45 Score=14.66 Aligned_cols=26 Identities=15% Similarity=0.420 Sum_probs=18.8
Q ss_pred CCCCCCEEEEEEC-CCCHHHH--HHHHHH
Q ss_conf 3137967888504-5530689--999970
Q gi|254780313|r 64 ILQSNRRIVDLGS-SPGSWSQ--VAARIT 89 (227)
Q Consensus 64 l~k~g~~VlDLGa-aPGgWsQ--va~~~~ 89 (227)
-+.+|.+|+|+|- +||||-- +..+.+
T Consensus 27 kLenGatViDcGV~~~Gg~eAG~l~t~vc 55 (314)
T COG3252 27 KLENGATVIDCGVNVDGGYEAGLLLTEVC 55 (314)
T ss_pred EECCCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 81389889982222587355778999887
No 390
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=24.21 E-value=55 Score=14.11 Aligned_cols=115 Identities=14% Similarity=0.178 Sum_probs=58.9
Q ss_pred HHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC--C--CCCCCEEEEC
Q ss_conf 98818447999999999864583137967888504553068999997068788327864112133--3--4698178301
Q gi|254780313|r 42 AQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM--E--PILGVKFFKF 117 (227)
Q Consensus 42 Ak~~gyrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~--~--~i~gv~~~~g 117 (227)
|-.-..-.-.||-++ .+..-++++++||=.|+ -||--+++.++....| .+|++++-.+- + .--|+..+ -
T Consensus 118 AA~~~~~~~Ta~~~l---~~~~~~~~g~~vLi~ga-aGgVG~~avQlAk~~G--a~Vi~t~~s~~k~e~~~~lGA~~v-i 190 (327)
T PRK10754 118 AAASFLKGLTVYYLL---RKTYEIKPDEQFLFHAA-AGGVGLIACQWAKALG--AKLIGTVGSAQKAQRALKAGAWQV-I 190 (327)
T ss_pred HHHHHHHHHHHHHHH---HHCCCCCCCCEEEEECC-CCCCCHHHHHHHHHCC--CEEEEEECCHHHHHHHHHCCCCEE-E
T ss_conf 775213588798876---53137899999999817-7611268999999869--999999898999999996699999-9
Q ss_pred CCCHHHHHHHHHHHCCC-CCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 12207999999973138-87489753202110222101578898999889876411487746999
Q gi|254780313|r 118 DFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV 181 (227)
Q Consensus 118 Di~~~~~~~~i~~~l~~-~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~ 181 (227)
|..+.+..+.+.+..++ .+|+|+-- .|... +.-+..+|+++|.+|.
T Consensus 191 ~~~~~~~~~~i~~~t~g~gvdvv~D~-----vG~~~-------------~~~~~~~l~~~G~iv~ 237 (327)
T PRK10754 191 NYREENIVERVKEITGGKKVRVVYDS-----VGKDT-------------WEASLDCLQRRGLMVS 237 (327)
T ss_pred ECCCCCHHHHHHHHHCCCCCEEEEEC-----CCHHH-------------HHHHHHHHHCCCEEEE
T ss_conf 89999999999998689983699989-----88899-------------9999998634989999
No 391
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase; InterPro: IPR011831 This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2, beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this entry. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This entry describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.; GO: 0008878 glucose-1-phosphate adenylyltransferase activity.
Probab=24.18 E-value=55 Score=14.11 Aligned_cols=42 Identities=17% Similarity=0.180 Sum_probs=34.7
Q ss_pred CCCCC-CCCCCCEEEECC-CCHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf 12133-346981783011-2207999999973138874897532
Q gi|254780313|r 102 DILDM-EPILGVKFFKFD-FLDLDSWEFIRQAIGGNPDLVLSDM 143 (227)
Q Consensus 102 Dl~~~-~~i~gv~~~~gD-i~~~~~~~~i~~~l~~~~DlVlSDm 143 (227)
+++.. ..++.|-.+-|| |..++..+++..+...++|+.+|=+
T Consensus 111 ~~i~~~~~p~yvlILsGDHiYkMDy~~mL~~H~e~~Ad~Tia~~ 154 (421)
T TIGR02091 111 DLIEETYDPEYVLILSGDHIYKMDYEKMLDYHIEKGADLTIACI 154 (421)
T ss_pred HHHHCCCCCCEEEEECCCCEECCCHHHHHHHHHHCCCCEEEEEE
T ss_conf 98740169248999346610104878999999856798799854
No 392
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=23.90 E-value=50 Score=14.36 Aligned_cols=158 Identities=16% Similarity=0.133 Sum_probs=64.2
Q ss_pred HHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEE-EECCCCCCCCC----CC-EEEE
Q ss_conf 881844799999999986458313796788850455306899999706878832786-41121333469----81-7830
Q gi|254780313|r 43 QLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV-AIDILDMEPIL----GV-KFFK 116 (227)
Q Consensus 43 k~~gyrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~Vi-gVDl~~~~~i~----gv-~~~~ 116 (227)
+.+||.-..|.-..|-.+.+.-.++.-.+||+.---+.-.+++.+. .....-+.|+ .-.-...+.+. |+ .++.
T Consensus 22 ~~~g~~V~~a~~~~~al~~~~~~~~DlviLDi~lP~~dG~~l~~~i-R~~~~~pII~lta~~~~~d~i~~l~~GADDYl~ 100 (225)
T PRK10529 22 EGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDL-RQWSAIPVIVLSARSEESDKIAALDAGADDYLS 100 (225)
T ss_pred HHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEE-ECCCCCCEEEEECCCCHHHHHHHHHCCCCEEEE
T ss_conf 9889999997999999998611799899980788888876331000-127998789995468989999999769876540
Q ss_pred CCCCHHHHHHHHHHHCCC-----CCCEEE--ECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE------E
Q ss_conf 112207999999973138-----874897--532021102221015788989998898764114877469999------3
Q gi|254780313|r 117 FDFLDLDSWEFIRQAIGG-----NPDLVL--SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK------T 183 (227)
Q Consensus 117 gDi~~~~~~~~i~~~l~~-----~~DlVl--SDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K------~ 183 (227)
--|.-.+....|...+.. ..+-++ .|...|.....-.-.-..+.|......+..-+++..|..|.+ +
T Consensus 101 KPf~~~eL~aRi~a~lrr~~~~~~~~~~~~~~~l~~d~~~~~v~~~g~~i~LT~~E~~lL~~L~~~~g~vvsre~L~~~v 180 (225)
T PRK10529 101 KPFGIGELQARLRVALRRHSATPAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 (225)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCEEEECCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCEECHHHHHHHH
T ss_conf 78545999999999971403788878649999999990339999999613136689999999997799619699999996
Q ss_pred ECC----CC--HHHHHHHHHHHCC
Q ss_conf 059----99--8999999986258
Q gi|254780313|r 184 FQG----GT--TNDILCLLKKHFQ 201 (227)
Q Consensus 184 F~G----~~--~~~l~~~l~~~F~ 201 (227)
|.. .+ ....+..+++.++
T Consensus 181 w~~~~~~~~~~idv~I~rLRkKl~ 204 (225)
T PRK10529 181 WGPNAVEHSHYLRIYMGHLRQKLE 204 (225)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 499989886879999999999720
No 393
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=23.82 E-value=55 Score=14.07 Aligned_cols=47 Identities=4% Similarity=-0.111 Sum_probs=29.0
Q ss_pred HHHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHH
Q ss_conf 99881844799999999986458313796788850455306899999
Q gi|254780313|r 41 RAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR 87 (227)
Q Consensus 41 ~Ak~~gyrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~ 87 (227)
.-..+||-...|.-..|..+.+.-..|.-.++|+.-.=+...+++.+
T Consensus 29 ~L~~~g~~V~~a~~~~eal~~~~~~~~DliilDi~lp~~~Gl~l~~~ 75 (240)
T PRK10710 29 YLRAASYAPTLISHGDEVLPYVRQTPPDLILLDLMLPGTDGLTLCRE 75 (240)
T ss_pred HHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHH
T ss_conf 99988999999899999999997379989998799988877632112
No 394
>KOG0023 consensus
Probab=23.80 E-value=56 Score=14.06 Aligned_cols=94 Identities=21% Similarity=0.276 Sum_probs=51.0
Q ss_pred HCCCCCCCCEEEEEECC-CCHHHHHHHHHHCCCCCCEEEEEECCCC------CCCCCCCEEEECCCC-HHHHHHHHHHHC
Q ss_conf 45831379678885045-5306899999706878832786411213------334698178301122-079999999731
Q gi|254780313|r 61 KHQILQSNRRIVDLGSS-PGSWSQVAARITGSNANNTRVVAIDILD------MEPILGVKFFKFDFL-DLDSWEFIRQAI 132 (227)
Q Consensus 61 kf~l~k~g~~VlDLGaa-PGgWsQva~~~~~~~~~~~~VigVDl~~------~~~i~gv~~~~gDi~-~~~~~~~i~~~l 132 (227)
.+++- ||+.|-=.|++ =|+. +.+.-.. .+.+|+++|--. ++.+ |+..+- |.+ +++-.+.+...+
T Consensus 176 ~~g~~-pG~~vgI~GlGGLGh~---aVq~AKA--MG~rV~vis~~~~kkeea~~~L-GAd~fv-~~~~d~d~~~~~~~~~ 247 (360)
T KOG0023 176 RSGLG-PGKWVGIVGLGGLGHM---AVQYAKA--MGMRVTVISTSSKKKEEAIKSL-GADVFV-DSTEDPDIMKAIMKTT 247 (360)
T ss_pred HCCCC-CCCEEEEECCCCCCHH---HHHHHHH--HCCEEEEEECCCHHHHHHHHHC-CCCEEE-EECCCHHHHHHHHHHH
T ss_conf 73999-9868988557640168---9999987--0867999927853489999854-962158-8427878999998752
Q ss_pred CCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 3887489753202110222101578898999889876411487746999
Q gi|254780313|r 133 GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV 181 (227)
Q Consensus 133 ~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~ 181 (227)
++-+|-|.+ . +..+++-++.+||++|++|.
T Consensus 248 dg~~~~v~~-----~--------------a~~~~~~~~~~lk~~Gt~V~ 277 (360)
T KOG0023 248 DGGIDTVSN-----L--------------AEHALEPLLGLLKVNGTLVL 277 (360)
T ss_pred CCCCEEEEE-----C--------------CCCCHHHHHHHHCCCCEEEE
T ss_conf 675023210-----2--------------32443888876103978999
No 395
>PRK05650 short chain dehydrogenase; Provisional
Probab=23.79 E-value=56 Score=14.06 Aligned_cols=140 Identities=16% Similarity=0.181 Sum_probs=70.5
Q ss_pred EEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CC-CCCCCEEEECCCCHHHHHHHHHHHCC---CCC
Q ss_conf 788850455306899999706878832786411213---------33-46981783011220799999997313---887
Q gi|254780313|r 70 RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------ME-PILGVKFFKFDFLDLDSWEFIRQAIG---GNP 136 (227)
Q Consensus 70 ~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~-~i~gv~~~~gDi~~~~~~~~i~~~l~---~~~ 136 (227)
+||=-|++-|==...|.+.. ..| .+|+-+|... +. .-..+.++..|+++++..+.+.+... +.+
T Consensus 2 rVlITGassGIG~alA~~la-~~G--~~V~l~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~~~~~~~~v~~~~g~i 78 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWA-REG--WRLALADVNEEGGEETLKELREAGGDGFYQRCDVRDYSQLTALAQACEEKWGGI 78 (270)
T ss_pred EEEEECCCCHHHHHHHHHHH-HCC--CEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 79998876499999999999-889--989999798899999999998449928999845899999999999999983997
Q ss_pred CEEEECCCHHHCCC-CCC---HHHHHHHHHHHHHHH----HHHCCC--CCCEEEEEE----ECCC---------------
Q ss_conf 48975320211022-210---157889899988987----641148--774699993----0599---------------
Q gi|254780313|r 137 DLVLSDMAYPTIGH-RKI---DHLRTMSLCEAATFF----ALEMLN--IGGDFLVKT----FQGG--------------- 187 (227)
Q Consensus 137 DlVlSDmapn~SG~-~~~---D~~~~~~L~~~al~~----A~~~Lk--~gG~fV~K~----F~G~--------------- 187 (227)
|+++.-.+-..-|. .+. |....++++...+.. .+..++ .+|..|.=- +.+.
T Consensus 79 DiLVNNAGi~~~g~~~~~~~e~~~~~~~vNl~g~~~~~~~~lp~m~~~~~G~IvnisS~ag~~~~p~~~~Y~asK~av~~ 158 (270)
T PRK05650 79 DVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKEQGKGRIVNIASMAGLMQGPAMSSYNVAKAGVVA 158 (270)
T ss_pred CEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 78962476679986201999999999999659999999999976755699589998585552899996679999999999
Q ss_pred CHHHHHHHHHHHCCEEEEECCCCCC
Q ss_conf 9899999998625846997686657
Q gi|254780313|r 188 TTNDILCLLKKHFQKVIHVKPVASR 212 (227)
Q Consensus 188 ~~~~l~~~l~~~F~~V~~~KP~aSR 212 (227)
-++.|...+..+=-.|..+-|-.-+
T Consensus 159 ~tesL~~El~~~gI~V~~v~PG~v~ 183 (270)
T PRK05650 159 LSETLLVELADDEIGVHVVCPSFFQ 183 (270)
T ss_pred HHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 9999999853219689999738898
No 396
>CHL00148 orf27 Ycf27; Reviewed
Probab=23.74 E-value=56 Score=14.06 Aligned_cols=36 Identities=17% Similarity=0.121 Sum_probs=21.6
Q ss_pred HHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC
Q ss_conf 8818447999999999864583137967888504553
Q gi|254780313|r 43 QLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPG 79 (227)
Q Consensus 43 k~~gyrsRaafKL~eId~kf~l~k~g~~VlDLGaaPG 79 (227)
..+||..-.|.--.|..+.+.--.|.-.+||++- |+
T Consensus 27 ~~~G~~v~~a~~g~~a~~~~~~~~~DlviLDi~L-P~ 62 (240)
T CHL00148 27 SIIGYEVITASDGEEALKLFHQEQPDLVILDVMM-PK 62 (240)
T ss_pred HHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCC-CC
T ss_conf 9789999998999999999974799999997999-98
No 397
>PRK07060 short chain dehydrogenase; Provisional
Probab=23.23 E-value=57 Score=14.00 Aligned_cols=111 Identities=17% Similarity=0.217 Sum_probs=62.1
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC--C---CCCCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 796788850455306899999706878832786411213--3---34698178301122079999999731388748975
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD--M---EPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLS 141 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~--~---~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlS 141 (227)
.|.++|=-|++-| -=.-+++.....| .+|+.+|... . ..-.++..++.|+.+....+.+.+.+ ++.|+++.
T Consensus 8 ~gK~~lVTG~~~G-IG~aia~~la~~G--a~V~~~~r~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~-g~iDilVn 83 (245)
T PRK07060 8 SGKSVLVTGASSG-IGRACAVALAARG--ARVVAAARNQADLDRLAGETGCEPLRLDVGDDAAIRAALAGA-GAFDGLVN 83 (245)
T ss_pred CCCEEEEECCCCH-HHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHC-CCCCEEEE
T ss_conf 9998999477768-9999999999879--999999799899999998639879998079999999999965-99989998
Q ss_pred CCCHHHCC-CCCC---HHHHHHHHHHHHHHH----HHH-CCC--CCCEEEE
Q ss_conf 32021102-2210---157889899988987----641-148--7746999
Q gi|254780313|r 142 DMAYPTIG-HRKI---DHLRTMSLCEAATFF----ALE-MLN--IGGDFLV 181 (227)
Q Consensus 142 Dmapn~SG-~~~~---D~~~~~~L~~~al~~----A~~-~Lk--~gG~fV~ 181 (227)
-.+....+ ..+. |-.+.++++.....+ +.+ +++ .+|..|.
T Consensus 84 nAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~k~~~~~m~~~~~~G~IIn 134 (245)
T PRK07060 84 CAGIASLESAIDMTAAGFDRVMAVNARGALLVARHVARAMIRAGRGGSIVN 134 (245)
T ss_pred CCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 988799999013999999999999709999999999999998089807999
No 398
>PRK12939 short chain dehydrogenase; Provisional
Probab=22.98 E-value=58 Score=13.97 Aligned_cols=111 Identities=16% Similarity=0.121 Sum_probs=59.8
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC--C----CCC----CCCEEEECCCCHHHHHHHHHHHCC---
Q ss_conf 796788850455306899999706878832786411213--3----346----981783011220799999997313---
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD--M----EPI----LGVKFFKFDFLDLDSWEFIRQAIG--- 133 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~--~----~~i----~gv~~~~gDi~~~~~~~~i~~~l~--- 133 (227)
.|.++|=-|++-| -=+-+++.....|. .|+..|... . +.+ ..+.++++|+++.+..+.+.+...
T Consensus 6 ~~KvalVTGgs~G-IG~aia~~la~~Ga--~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 82 (250)
T PRK12939 6 AGKRALVTGAARG-LGAAFAEALAEAGA--TVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAAL 82 (250)
T ss_pred CCCEEEEECCCCH-HHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHC
T ss_conf 9987999583668-99999999998799--99999698899999999999559909999924899999999999999974
Q ss_pred CCCCEEEECCCHHHCCC-CCC---HHHHHHHHHHHH----HHHHHHCCC--CCCEEE
Q ss_conf 88748975320211022-210---157889899988----987641148--774699
Q gi|254780313|r 134 GNPDLVLSDMAYPTIGH-RKI---DHLRTMSLCEAA----TFFALEMLN--IGGDFL 180 (227)
Q Consensus 134 ~~~DlVlSDmapn~SG~-~~~---D~~~~~~L~~~a----l~~A~~~Lk--~gG~fV 180 (227)
++.|+++.-.+....+. .+. |-...++++... ...+.+.|+ .+|..|
T Consensus 83 g~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~iNl~~~~~~~k~~~~~m~~~~~G~II 139 (250)
T PRK12939 83 GGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMSRAALPHLRDSGRGRIV 139 (250)
T ss_pred CCCCEEEECCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 999799988778999990349999999999998299999999999999984993799
No 399
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=22.93 E-value=58 Score=13.96 Aligned_cols=65 Identities=15% Similarity=-0.084 Sum_probs=32.1
Q ss_pred CCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCH-HHHHHHHHHHCCEE
Q ss_conf 88748975320211022210157889899988987641148774699993059998-99999998625846
Q gi|254780313|r 134 GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT-NDILCLLKKHFQKV 203 (227)
Q Consensus 134 ~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~-~~l~~~l~~~F~~V 203 (227)
.+.=+|+||+.||-.+...-++....+. .. |..-++.-|.-+.=++-+.+. ..-.+.++..|.+.
T Consensus 104 rkiliviSDG~P~D~~~~~~~~~~~~D~-~~----av~e~~~~GI~~~~i~i~~~~~~~~~~~l~~i~g~~ 169 (174)
T cd01454 104 RKILLVISDGEPNDLDYYEGNVFATEDA-LR----AVIEARKLGIEVFGITIDRDATTVDKEYLKNIFGEE 169 (174)
T ss_pred CEEEEEEECCCCCCCCCCCCCHHHHHHH-HH----HHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 6799998389976677788755389999-99----999999879889999989855566999999842878
No 400
>PRK06841 short chain dehydrogenase; Provisional
Probab=22.87 E-value=58 Score=13.95 Aligned_cols=82 Identities=20% Similarity=0.150 Sum_probs=49.3
Q ss_pred HHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC-----C--CCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf 864583137967888504553068999997068788327864112133-----3--469817830112207999999973
Q gi|254780313|r 59 NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM-----E--PILGVKFFKFDFLDLDSWEFIRQA 131 (227)
Q Consensus 59 d~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~-----~--~i~gv~~~~gDi~~~~~~~~i~~~ 131 (227)
|-.|+| .|.++|=-|++-|==...| +.....| .+|+.+|..+- . .-.++..+++|+++++..+.+.+.
T Consensus 8 ~m~~~l--~gKvalVTGas~GIG~aiA-~~la~~G--a~V~i~d~~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~v~~ 82 (255)
T PRK06841 8 DLAFDL--SGKVAVVTGGASGIGHAIA-ELFAAKG--ARVALLDRSEDVAEVAAQLLGGNAKGLVCDVSDSQSVEAAVAA 82 (255)
T ss_pred CCCCCC--CCCEEEEECCCCHHHHHHH-HHHHHCC--CEEEEEECCHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHH
T ss_conf 837589--9999999796778999999-9999879--9999996987899999984599669999846999999999999
Q ss_pred CC---CCCCEEEECCCH
Q ss_conf 13---887489753202
Q gi|254780313|r 132 IG---GNPDLVLSDMAY 145 (227)
Q Consensus 132 l~---~~~DlVlSDmap 145 (227)
.. ++.|+++.-.+.
T Consensus 83 ~~~~~g~iDiLVNNAGi 99 (255)
T PRK06841 83 AISAFGRIDILVNSAGV 99 (255)
T ss_pred HHHHHCCCCEEEECCCC
T ss_conf 99981998799989978
No 401
>TIGR00308 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs . The enzyme is found in both eukaryotes and archaea .; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing.
Probab=22.74 E-value=58 Score=13.94 Aligned_cols=145 Identities=20% Similarity=0.154 Sum_probs=77.9
Q ss_pred EEEEEECCCCHHH-HHHHHHHCCCCCCEEEEEECCCCC--CCCC-C--CEEEE-CCCCHHHHHHHHHHH---CCCCCCEE
Q ss_conf 7888504553068-999997068788327864112133--3469-8--17830-112207999999973---13887489
Q gi|254780313|r 70 RIVDLGSSPGSWS-QVAARITGSNANNTRVVAIDILDM--EPIL-G--VKFFK-FDFLDLDSWEFIRQA---IGGNPDLV 139 (227)
Q Consensus 70 ~VlDLGaaPGgWs-Qva~~~~~~~~~~~~VigVDl~~~--~~i~-g--v~~~~-gDi~~~~~~~~i~~~---l~~~~DlV 139 (227)
.|+|-=+|-|==- -||.+.- -+ .--+|++-||+|- +.|. | ..-+. +++.+.|.-..+... -...||+|
T Consensus 97 ~~~dALSasGiRaiRya~E~~-fn-gv~~v~~ND~~P~Ave~I~~N~~~N~v~N~~v~n~Da~~~L~~~nkat~~~F~vi 174 (462)
T TIGR00308 97 EIADALSASGIRAIRYALEVE-FN-GVKKVFANDINPKAVESIKNNVKLNSVENIEVINEDAAAVLRKRNKATFRKFEVI 174 (462)
T ss_pred HHHHHHHCCCHHHHHHHHHCC-CC-CCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCHHHCCCCCEE
T ss_conf 999875104088999987446-57-6106775347737889988412324422765455037999875121123676437
Q ss_pred EECCCHHHCCCCCCHHHH-HHH-----HHHHHHHHHH--------HCCCCC-CEEEEEEECCCCHH--HHHHHHHHHCCE
Q ss_conf 753202110222101578-898-----9998898764--------114877-46999930599989--999999862584
Q gi|254780313|r 140 LSDMAYPTIGHRKIDHLR-TMS-----LCEAATFFAL--------EMLNIG-GDFLVKTFQGGTTN--DILCLLKKHFQK 202 (227)
Q Consensus 140 lSDmapn~SG~~~~D~~~-~~~-----L~~~al~~A~--------~~Lk~g-G~fV~K~F~G~~~~--~l~~~l~~~F~~ 202 (227)
==| |-=|=-..+|++. ++. |+..|.+.|. .+|++= |.+-+|.=...|+- -|+-.+.+.-.+
T Consensus 175 DiD--PFGspAPFvd~A~~~~~~~NglL~vTATDta~LcG~G~~~~CL~kY~GA~~l~~~~~HE~aLR~l~gf~~~~aak 252 (462)
T TIGR00308 175 DID--PFGSPAPFVDSAIRASAKRNGLLLVTATDTAALCGSGYKKSCLRKYGGAFPLKTESCHEVALRLLVGFVVREAAK 252 (462)
T ss_pred EEC--CCCCCCCHHHHHHHHHHHCCCCEEEHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 647--877974158999999974686044066789986278886212454301345467643068999999999988875
Q ss_pred EE-EECCCCCCCCCCEEEE
Q ss_conf 69-9768665755824989
Q gi|254780313|r 203 VI-HVKPVASRAESVEMFL 220 (227)
Q Consensus 203 V~-~~KP~aSR~~S~E~Yl 220 (227)
.+ ..+|.=| -|+|.|+
T Consensus 253 Y~kA~~pllS--~~~~hY~ 269 (462)
T TIGR00308 253 YEKALEPLLS--HSSDHYV 269 (462)
T ss_pred HHHHHHHHHH--EEEEEEE
T ss_conf 6776445530--2231057
No 402
>pfam00106 adh_short short chain dehydrogenase. This family contains a wide variety of dehydrogenases.
Probab=22.59 E-value=59 Score=13.92 Aligned_cols=70 Identities=19% Similarity=0.167 Sum_probs=36.6
Q ss_pred CCEEEECCCCHHHHHHHHHHHC---CCCCCEEEECCCHHHCCC-CCC---HHHHHHHHHHHHHH-HHHHCCC-CCCEEE
Q ss_conf 8178301122079999999731---388748975320211022-210---15788989998898-7641148-774699
Q gi|254780313|r 111 GVKFFKFDFLDLDSWEFIRQAI---GGNPDLVLSDMAYPTIGH-RKI---DHLRTMSLCEAATF-FALEMLN-IGGDFL 180 (227)
Q Consensus 111 gv~~~~gDi~~~~~~~~i~~~l---~~~~DlVlSDmapn~SG~-~~~---D~~~~~~L~~~al~-~A~~~Lk-~gG~fV 180 (227)
.+.++++|+++++..+.+.+.. .++.|+++.-.+-...+. .+. +-...++.+..... ++..++. .+|.+|
T Consensus 53 ~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~linnAG~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~~~G~Ii 131 (167)
T pfam00106 53 EVTVAACDVADRDALAALLAALPAALGPLDGVVHNAGVLDDGPLEELTPERFERVLAPKVTGAWNLHELTLDLDLGAFV 131 (167)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE
T ss_conf 5999984699999999999999997599739998871268986565269999999999869999999997553589579
No 403
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase; InterPro: IPR004393 Nicotinate-nucleotide pyrophosphorylase (2.4.2.19 from EC), also known as quinolinate phosphoribosyltransferase (decarboxylating), catalyses the conversion of nicotinate D-ribonucleotide, pyrophosphate and carbon dioxide into pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate. This enzyme is a type II phosphoribosyltransferase which provides the de novo source of nicotinate mononucleotide (NAMN) for NAD biosynthesis in both prokaryotes and eukaryotes , . Structural studies have shown that the active form of this enzyme is a homodimer with an unsual fold , , . The N-terminal forms a mixed alpha/beta domain, while the C-terminal region forms a multi-stranded, open alpha/beta barrel. The active site is found at the C-terminal ends of the beta strands of the alpha/beta barrel, and is bordered by the N-terminal domain of the second subunit of the dimer. It contains several conserved charged residues thought to be important determinants of substrate binding and catalysis. ; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0019363 pyridine nucleotide biosynthetic process.
Probab=22.34 E-value=44 Score=14.70 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=17.5
Q ss_pred HHHHHHHHHCCCCCCEEEEC-CCHHH
Q ss_conf 99999997313887489753-20211
Q gi|254780313|r 123 DSWEFIRQAIGGNPDLVLSD-MAYPT 147 (227)
Q Consensus 123 ~~~~~i~~~l~~~~DlVlSD-mapn~ 147 (227)
++.+++.+.+.-.+|+||=| |.|..
T Consensus 194 enlE~a~eA~~AGADiImLDNm~p~~ 219 (276)
T TIGR00078 194 ENLEEAEEAAEAGADIIMLDNMKPEE 219 (276)
T ss_pred CCHHHHHHHHHCCCCEEECCCCCHHH
T ss_conf 89899999997099599806989479
No 404
>TIGR00675 dcm DNA-cytosine methyltransferase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.73 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine , , . In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA , . The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A : the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation.
Probab=22.19 E-value=58 Score=13.96 Aligned_cols=130 Identities=22% Similarity=0.162 Sum_probs=68.1
Q ss_pred EEEEECCCCHHHHHHHHHHCCC-C-CCEEEEEECC--CCCC-----CCCCC--EEEECCCCHHHHHHHHHHHCCCCCCEE
Q ss_conf 8885045530689999970687-8-8327864112--1333-----46981--783011220799999997313887489
Q gi|254780313|r 71 IVDLGSSPGSWSQVAARITGSN-A-NNTRVVAIDI--LDME-----PILGV--KFFKFDFLDLDSWEFIRQAIGGNPDLV 139 (227)
Q Consensus 71 VlDLGaaPGgWsQva~~~~~~~-~-~~~~VigVDl--~~~~-----~i~gv--~~~~gDi~~~~~~~~i~~~l~~~~DlV 139 (227)
++||.|+=||.-.= -+.++.. + .--.|++.++ .+-. ..-+. .+..+||++.+.-+.++...-..+|++
T Consensus 1 ~idLFaGiGG~rlG-fe~~g~~l~~~~~~V~~sE~PRdk~A~~tY~~Nf~~~~~~~~~DI~~i~~~~~~~~~~~Pd~D~L 79 (425)
T TIGR00675 1 VIDLFAGIGGIRLG-FEQAGKELTVAFKCVFASEIPRDKYAQKTYEANFGNDEKVPFGDITKISPSDLLRHIAIPDFDIL 79 (425)
T ss_pred CEEEECCCCHHHHH-HHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 94542551357899-99741014111378872016687789999997647884206776333660115001248867899
Q ss_pred EECCCHHH-----CCCCC----CH--HHHHHHHHHHHHHHHHHCCCCCCEEE------EEEEC---CCCHHHHHHHHHHH
Q ss_conf 75320211-----02221----01--57889899988987641148774699------99305---99989999999862
Q gi|254780313|r 140 LSDMAYPT-----IGHRK----ID--HLRTMSLCEAATFFALEMLNIGGDFL------VKTFQ---GGTTNDILCLLKKH 199 (227)
Q Consensus 140 lSDmapn~-----SG~~~----~D--~~~~~~L~~~al~~A~~~Lk~gG~fV------~K~F~---G~~~~~l~~~l~~~ 199 (227)
|+ +|.| .|... .+ ..| =.|......+ ++.=+|..-|+ +.-=. |..+.-+++.|...
T Consensus 80 ~g--GFPCQ~FS~AG~~~~~~GF~dED~R-GtLFFe~~Ri-lK~KkP~~FllENVkgL~~hd~~~~G~Tf~vI~~~Le~l 155 (425)
T TIGR00675 80 LG--GFPCQPFSIAGKRKGELGFEDEDTR-GTLFFEIVRI-LKEKKPKFFLLENVKGLVSHDKSQRGRTFKVIIETLEEL 155 (425)
T ss_pred EC--CCCCCHHHHHCCCCCCCCCCCCCCC-CCHHHHHHHH-HHHCCCCEEEEECCCHHCCCCCCCCCCHHHHHHHHHHHC
T ss_conf 63--8997134464116766886566777-7528998999-985189578844361101788613452789999999873
Q ss_pred CCEEEE
Q ss_conf 584699
Q gi|254780313|r 200 FQKVIH 205 (227)
Q Consensus 200 F~~V~~ 205 (227)
=.+|..
T Consensus 156 GY~v~~ 161 (425)
T TIGR00675 156 GYKVEY 161 (425)
T ss_pred CCEEEH
T ss_conf 887733
No 405
>pfam04734 Ceramidase_alk Neutral/alkaline non-lysosomal ceramidase. This family represents a group of neutral/alkaline ceramidases found in both bacteria and eukaryotes.
Probab=22.05 E-value=60 Score=13.85 Aligned_cols=34 Identities=12% Similarity=0.191 Sum_probs=21.4
Q ss_pred HHHHCCCCCCCCEEE----EEECCCCHHHHHHHHHHCC
Q ss_conf 986458313796788----8504553068999997068
Q gi|254780313|r 58 INEKHQILQSNRRIV----DLGSSPGSWSQVAARITGS 91 (227)
Q Consensus 58 Id~kf~l~k~g~~Vl----DLGaaPGgWsQva~~~~~~ 91 (227)
|.++|.=+-.-.+|+ +-=++||||+||....+..
T Consensus 75 L~~~~g~lY~~~NV~isgTHTHsgPgG~~~~~ly~its 112 (671)
T pfam04734 75 LKARYGDLYTEQNVALSGTHTHAGPGGYLHYLLYQITS 112 (671)
T ss_pred HHHHHCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCC
T ss_conf 87651565562448998654477763203444310356
No 406
>pfam11968 DUF3321 Protein of unknown function (DUF3321). This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=21.85 E-value=61 Score=13.82 Aligned_cols=114 Identities=18% Similarity=0.225 Sum_probs=58.4
Q ss_pred CEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHC
Q ss_conf 67888504553068999997068788327864112133346981783011220799999997313887489753202110
Q gi|254780313|r 69 RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTI 148 (227)
Q Consensus 69 ~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDmapn~S 148 (227)
.++||+||=-- +-++...+ . -.|..|||..-+| + ..+-||++.... ..-..+||+|-+-+--|+-
T Consensus 54 lr~LEVGALst---~N~~S~~~---~-~dv~rIDLnSq~p--~--I~qqDFmerPlP----~~e~e~F~iISlSLVLNfV 118 (220)
T pfam11968 54 LRALEVGALST---KNACSKSG---L-FDVTRIDLNSQEP--G--ILQQDFMERPLP----KDESEKFDIISLSLVLNFV 118 (220)
T ss_pred CEEEEECCCCC---CCHHCCCC---E-EEEEEEECCCCCC--C--CHHHHHHHCCCC----CCCCCCCCEEEEEEEEECC
T ss_conf 31775545564---21222567---4-7778852589998--7--144324407788----8831141358887777416
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCCE------EEEE----EECC--CCHHHHHHHHHHH-CCEEEE
Q ss_conf 222101578898999889876411487746------9999----3059--9989999999862-584699
Q gi|254780313|r 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGD------FLVK----TFQG--GTTNDILCLLKKH-FQKVIH 205 (227)
Q Consensus 149 G~~~~D~~~~~~L~~~al~~A~~~Lk~gG~------fV~K----~F~G--~~~~~l~~~l~~~-F~~V~~ 205 (227)
. |...-=++ |.-+..+|+|+|. |++= +-.+ -+.+.|.+.|... |..|+.
T Consensus 119 P----~~~~RGeM----L~r~~~fL~~~~~~~~~~lFlVLPlpCv~NSRY~~~~~l~~im~slGf~~~~~ 180 (220)
T pfam11968 119 P----DPADRGEM----LKRTTKFLRPPGPGSPPSLFLVLPLPCVTNSRYMDEERLQAIMSSLGFVLVKS 180 (220)
T ss_pred C----CHHHHHHH----HHHHHHHHCCCCCCCCCEEEEEEEHHHHHCCCCCCHHHHHHHHHHCCCEEEEE
T ss_conf 9----87888699----99999971799766663268873245640440019999999999679558876
No 407
>PRK08628 short chain dehydrogenase; Provisional
Probab=21.74 E-value=61 Score=13.81 Aligned_cols=111 Identities=10% Similarity=0.074 Sum_probs=58.2
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC---------CCCCCCEEEECCCCHHHHHHHHH----HHCC
Q ss_conf 7967888504553068999997068788327864112133---------34698178301122079999999----7313
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM---------EPILGVKFFKFDFLDLDSWEFIR----QAIG 133 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~---------~~i~gv~~~~gDi~~~~~~~~i~----~~l~ 133 (227)
.|.++|=-|++-| -=.-+++.....|. .|+-+|..+- ..-..+.++++|+++++..+.+. +.+
T Consensus 6 ~gKvalVTG~s~G-IG~a~a~~la~~Ga--~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~v~~~~~~~- 81 (258)
T PRK08628 6 KDKVVIVTGGASG-IGAAISLRLAEEGA--IPVVFGRSAPDDEFAEELRALQPRAEFVQVDLQDDAQCRDAVAQTVAKF- 81 (258)
T ss_pred CCCEEEEECCCCH-HHHHHHHHHHHCCC--EEEEEECCCCHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHH-
T ss_conf 9998999277778-99999999998799--8999808802399999999539978999952799999999999999982-
Q ss_pred CCCCEEEECCCHHHCCCCCCHH---HHHHHHHHH----HHHHHHHCCCCC-CEEEE
Q ss_conf 8874897532021102221015---788989998----898764114877-46999
Q gi|254780313|r 134 GNPDLVLSDMAYPTIGHRKIDH---LRTMSLCEA----ATFFALEMLNIG-GDFLV 181 (227)
Q Consensus 134 ~~~DlVlSDmapn~SG~~~~D~---~~~~~L~~~----al~~A~~~Lk~g-G~fV~ 181 (227)
++.|+++.-.+.+-....+.+. .+.+++... ....+...|+.+ |..|.
T Consensus 82 g~iDiLVnnAGi~~~~~~e~~~e~~~~~~~~Nl~~~~~l~~~~~p~l~~~~GsIIn 137 (258)
T PRK08628 82 GRIDGLVNNAGVNDGVGLDAGRDAFVASLERNLIHYYVMAHYCLPHLKASRGAIVN 137 (258)
T ss_pred CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 99889998882278877789999999999987499999999999988854954999
No 408
>PRK07576 short chain dehydrogenase; Provisional
Probab=21.66 E-value=61 Score=13.80 Aligned_cols=76 Identities=14% Similarity=0.106 Sum_probs=44.9
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CCC-CCCCEEEECCCCHHHHHHHH----HHHC
Q ss_conf 796788850455306899999706878832786411213---------334-69817830112207999999----9731
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------MEP-ILGVKFFKFDFLDLDSWEFI----RQAI 132 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~~-i~gv~~~~gDi~~~~~~~~i----~~~l 132 (227)
.|.++|=.|++-| -=..+++.....|- +|+-.|..+ +.+ -..+.++++|+++.+..+.+ .+.+
T Consensus 7 ~gK~alVTGgs~G-IG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 83 (260)
T PRK07576 7 AGKNVFVVGGTSG-INLGIAQAFARAGA--NVAVASRSQEKVDAAVAQLQQAGPEALGVSADVRDYAAVEAAFAAIADEF 83 (260)
T ss_pred CCCEEEEECCCCH-HHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 8998999589619-99999999998799--99999798899999999999539948999931899999999999999984
Q ss_pred CCCCCEEEECCCHH
Q ss_conf 38874897532021
Q gi|254780313|r 133 GGNPDLVLSDMAYP 146 (227)
Q Consensus 133 ~~~~DlVlSDmapn 146 (227)
++.|++++-.+.+
T Consensus 84 -G~iDiLVnnAg~~ 96 (260)
T PRK07576 84 -GPIDVLVSGAAGN 96 (260)
T ss_pred -CCCCEEEECCCCC
T ss_conf -9998999898678
No 409
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase; InterPro: IPR013445 This entry contains CDP-glucose 4,6-dehydratases from a variety of Gram-negative and Gram-positive bacteria. Members are typically encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate CDP-D-glucose. This is used by the proteins in this entry to produce CDP-4-keto-6-deoxyglucose..
Probab=21.56 E-value=62 Score=13.79 Aligned_cols=60 Identities=18% Similarity=0.153 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHHCCCCCCEEEEEECCCCCCCC---------CCC------EEEECCCCHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 53068999997068788327864112133346---------981------783011220799999997313887489753
Q gi|254780313|r 78 PGSWSQVAARITGSNANNTRVVAIDILDMEPI---------LGV------KFFKFDFLDLDSWEFIRQAIGGNPDLVLSD 142 (227)
Q Consensus 78 PGgWsQva~~~~~~~~~~~~VigVDl~~~~~i---------~gv------~~~~gDi~~~~~~~~i~~~l~~~~DlVlSD 142 (227)
=|||+-+=...+|. .|.|.=|.|-..+ ... ..+.|||+|.+....+...+ ++|+|.+=
T Consensus 16 KGSWL~lWL~~lGA-----~V~GYSL~P~t~PnlFe~l~l~~~~~~~Wyf~~~~gDIrD~~~L~~~~~~~--~PeIvFHl 88 (361)
T TIGR02622 16 KGSWLSLWLLELGA-----EVAGYSLDPPTSPNLFELLNLAKKIKDSWYFSSIFGDIRDAAKLEKAIAEF--KPEIVFHL 88 (361)
T ss_pred CHHHHHHHHHHCCC-----EEEEEECCCCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCHHHHHHHHHHC--CCCEEEHH
T ss_conf 25589999984796-----798971688788405557525424323505542330323278999999972--89898333
Q ss_pred CC
Q ss_conf 20
Q gi|254780313|r 143 MA 144 (227)
Q Consensus 143 ma 144 (227)
+|
T Consensus 89 AA 90 (361)
T TIGR02622 89 AA 90 (361)
T ss_pred HH
T ss_conf 54
No 410
>PRK07024 short chain dehydrogenase; Provisional
Probab=21.42 E-value=62 Score=13.77 Aligned_cols=74 Identities=16% Similarity=0.222 Sum_probs=44.0
Q ss_pred CEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCC--CC----CCC--CCCEEEECCCCHHHHHHHHHHHCC---CCCC
Q ss_conf 678885045530689999970687883278641121--33----346--981783011220799999997313---8874
Q gi|254780313|r 69 RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL--DM----EPI--LGVKFFKFDFLDLDSWEFIRQAIG---GNPD 137 (227)
Q Consensus 69 ~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~--~~----~~i--~gv~~~~gDi~~~~~~~~i~~~l~---~~~D 137 (227)
++||=.||+-|==-+.|.+.. ..|. +|+.++.. .. +.+ .++..+..|+++.+..+.+.+.+. +..|
T Consensus 3 ~~VlITGassGIG~a~A~~la-~~G~--~v~l~~R~~~~L~~~~~~~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~iD 79 (256)
T PRK07024 3 LKVFITGASSGIGQALAREYA-RQGA--TLGLVARRTDALQAFAARLPKARVSVYAADVRDADALAAAAADFIAAHGCPD 79 (256)
T ss_pred CEEEEECCCHHHHHHHHHHHH-HCCC--EEEEEECCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 989998460299999999999-8899--8999989889999999976799769998117999999999999999839987
Q ss_pred EEEECCCH
Q ss_conf 89753202
Q gi|254780313|r 138 LVLSDMAY 145 (227)
Q Consensus 138 lVlSDmap 145 (227)
+++.-.+.
T Consensus 80 ilinNAGi 87 (256)
T PRK07024 80 VVIANAGI 87 (256)
T ss_pred EEEECCCC
T ss_conf 99988855
No 411
>PRK11519 tyrosine kinase; Provisional
Probab=21.34 E-value=62 Score=13.76 Aligned_cols=82 Identities=18% Similarity=0.179 Sum_probs=46.6
Q ss_pred CCCCEEEEEECCCC-HHHHHHHHH---HCCCCCCEEEEEECCCC--------CCC----------------------CCC
Q ss_conf 37967888504553-068999997---06878832786411213--------334----------------------698
Q gi|254780313|r 66 QSNRRIVDLGSSPG-SWSQVAARI---TGSNANNTRVVAIDILD--------MEP----------------------ILG 111 (227)
Q Consensus 66 k~g~~VlDLGaaPG-gWsQva~~~---~~~~~~~~~VigVDl~~--------~~~----------------------i~g 111 (227)
+++..|+=-.+.|| |-|-+++.+ ....|.+..+|..|+.. ..+ ++|
T Consensus 524 ~~~~vi~vTS~~pgEGKSt~a~nLA~~~A~~G~rvLLID~DlRrp~l~~~~~~~~~~GLs~~L~g~~~~~~~i~~~~~~~ 603 (720)
T PRK11519 524 AQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSEILIGQGDITTAAKPTSIAN 603 (720)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHCCCCCCCCHHHHCCCCCCHHHHCCCCCCCC
T ss_conf 88767999708999978999999999998379919999387777016775399999985998079997899703579899
Q ss_pred CEEEE-CC-------CCHHHHHHHHHHHCCCCCCEEEECCCHHH
Q ss_conf 17830-11-------22079999999731388748975320211
Q gi|254780313|r 112 VKFFK-FD-------FLDLDSWEFIRQAIGGNPDLVLSDMAYPT 147 (227)
Q Consensus 112 v~~~~-gD-------i~~~~~~~~i~~~l~~~~DlVlSDmapn~ 147 (227)
..++. |- +........+.+.+...+|.|+=|.+|=.
T Consensus 604 l~vl~~G~~~pnp~elL~s~~~~~ll~~l~~~yD~IIiDtpPv~ 647 (720)
T PRK11519 604 FDLIPRGQVPPNPSELLMSERFAELVAWASKNYDLVLIDTPPIL 647 (720)
T ss_pred EEEECCCCCCCCHHHHHCCHHHHHHHHHHHHHCCEEEEECCCCC
T ss_conf 89976999994989983875999999999852999999399965
No 412
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=21.32 E-value=62 Score=13.76 Aligned_cols=82 Identities=16% Similarity=0.203 Sum_probs=48.1
Q ss_pred HHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CCCC-CCCEEEECCCCHHHHHHHH
Q ss_conf 86458313796788850455306899999706878832786411213---------3346-9817830112207999999
Q gi|254780313|r 59 NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------MEPI-LGVKFFKFDFLDLDSWEFI 128 (227)
Q Consensus 59 d~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~~i-~gv~~~~gDi~~~~~~~~i 128 (227)
++-|+| .|.++|=-|++-| -=.-+++.....|- +|+-.|..+ ++.. ..+..+++|+++.+..+.+
T Consensus 3 ~~~f~l--~gK~alVTG~s~G-IG~aiA~~la~~Ga--~Vii~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~ 77 (265)
T PRK07097 3 ENMFSL--KGKIALITGASYG-IGFAIAKAYAEAGA--TIVFNDIKQELVDKGLAAYRELGIEAHGYVCDVTDEDGIQAM 77 (265)
T ss_pred CCCCCC--CCCEEEEECCCCH-HHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHH
T ss_conf 404198--9998999585768-99999999998699--999995998999999999995499179999328999999999
Q ss_pred HHHCC---CCCCEEEECCCH
Q ss_conf 97313---887489753202
Q gi|254780313|r 129 RQAIG---GNPDLVLSDMAY 145 (227)
Q Consensus 129 ~~~l~---~~~DlVlSDmap 145 (227)
.+... ++.|+++.-.+-
T Consensus 78 ~~~~~~~~g~iDiLVnNAG~ 97 (265)
T PRK07097 78 VAQIEKEVGVIDILVNNAGI 97 (265)
T ss_pred HHHHHHHCCCCCEEEECCCC
T ss_conf 99999982999899989989
No 413
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=21.14 E-value=62 Score=13.77 Aligned_cols=38 Identities=8% Similarity=-0.100 Sum_probs=16.7
Q ss_pred HHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCH
Q ss_conf 88184479999999998645831379678885045530
Q gi|254780313|r 43 QLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80 (227)
Q Consensus 43 k~~gyrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGg 80 (227)
+++||..-.|.--.|-.+.+.--.+.-.|||++--.+.
T Consensus 22 ~~~g~~v~~a~~g~~a~~~~~~~~~DlvilDi~LP~~d 59 (240)
T PRK10701 22 AKHDIDVTVEPRGDRAEETILREQPDLVLLDIMLPGKD 59 (240)
T ss_pred HHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 88799999989999999998617999999928997678
No 414
>KOG0229 consensus
Probab=21.01 E-value=61 Score=13.81 Aligned_cols=43 Identities=21% Similarity=0.437 Sum_probs=30.8
Q ss_pred EEEEEEECCCCHHHHHHHHHHHCCE---------------EEEECCCCCCCCCCEEEEEECC
Q ss_conf 6999930599989999999862584---------------6997686657558249898307
Q gi|254780313|r 178 DFLVKTFQGGTTNDILCLLKKHFQK---------------VIHVKPVASRAESVEMFLLAKG 224 (227)
Q Consensus 178 ~fV~K~F~G~~~~~l~~~l~~~F~~---------------V~~~KP~aSR~~S~E~Ylv~~g 224 (227)
.||+|..+.++...+.+.|..+++. ++.+||.. +.++|+|-.+
T Consensus 152 rFiIKTv~~~E~~~l~~mLp~Yy~~v~~~~~~TLl~kf~Gly~vk~~g----g~k~yfvVM~ 209 (420)
T KOG0229 152 RFIIKTVRKSEVKVLLKMLPGYYQHVVEQNNRTLLPKFFGLYRVKPDG----GKKIYFVVMN 209 (420)
T ss_pred EEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHCCEEEEEECC----CCEEEEEEEC
T ss_conf 289985348899999998788889986269974460021047986169----8279999964
No 415
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=21.01 E-value=63 Score=13.72 Aligned_cols=40 Identities=25% Similarity=0.246 Sum_probs=25.1
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC
Q ss_conf 99998818447999999999864583137967888504553
Q gi|254780313|r 39 VQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPG 79 (227)
Q Consensus 39 ~~~Ak~~gyrsRaafKL~eId~kf~l~k~g~~VlDLGaaPG 79 (227)
...=+.+||..-.+.--.|..+.+.-..+.-.+||++ -|+
T Consensus 20 ~~~L~~~g~~v~~~~~~~~al~~~~~~~~DlvilDi~-LP~ 59 (229)
T PRK11083 20 VYALQSEGFTVEWFERGLPALDKLRQQPPDLVILDVG-LPD 59 (229)
T ss_pred HHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCC-CCC
T ss_conf 9999988999999899999999997189989997388-999
No 416
>PRK07890 short chain dehydrogenase; Provisional
Probab=20.88 E-value=64 Score=13.70 Aligned_cols=110 Identities=15% Similarity=0.109 Sum_probs=56.5
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCC--C-------CCCC-CCCEEEECCCCHHHHHHHH----HHHC
Q ss_conf 79678885045530689999970687883278641121--3-------3346-9817830112207999999----9731
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL--D-------MEPI-LGVKFFKFDFLDLDSWEFI----RQAI 132 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~--~-------~~~i-~gv~~~~gDi~~~~~~~~i----~~~l 132 (227)
.|.++|=-|++-| -=.-+++.....|. +|+-.|.. . +... ..+.++++|+++.+..+.+ .+.+
T Consensus 4 ~gK~alVTG~s~G-IG~aia~~la~~Ga--~V~i~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~~~~~v~~~~~~f 80 (258)
T PRK07890 4 KDKVVVVSGVGPG-LGTTLAVRAAREGA--DVVLAARTAERLDEVAKQIDDLGRRALAVVTDITDEAQVANLVDAALERF 80 (258)
T ss_pred CCCEEEEECCCCH-HHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 9988999685658-99999999998799--89999798999999999999649958999816999999999999999984
Q ss_pred CCCCCEEEECCCH--HHCCCCCCHHH---HHHHHHHHH----HHHHHHCCC-CCCEEE
Q ss_conf 3887489753202--11022210157---889899988----987641148-774699
Q gi|254780313|r 133 GGNPDLVLSDMAY--PTIGHRKIDHL---RTMSLCEAA----TFFALEMLN-IGGDFL 180 (227)
Q Consensus 133 ~~~~DlVlSDmap--n~SG~~~~D~~---~~~~L~~~a----l~~A~~~Lk-~gG~fV 180 (227)
++.|+++.-.+. ......+.|.. ..++++... ...+...|+ .||..|
T Consensus 81 -G~iDiLVnnAg~~~~~~~~~~~~~e~~~~~~~~nl~~~~~~~k~~~p~m~~~~G~IV 137 (258)
T PRK07890 81 -GRVDVLVNNAFRVPSMKPLAGADFDHWRDVIETNVLGTLRLTQAFTPALAESGGSVV 137 (258)
T ss_pred -CCCCEEEECCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf -999899986866789998002999999999998759999999988999997698599
No 417
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=20.77 E-value=64 Score=13.68 Aligned_cols=114 Identities=15% Similarity=0.207 Sum_probs=58.6
Q ss_pred CCCEEEEEECCCC-HHHHHHHHHHCCCCCCEEEEEECCC-----------CC-CCCCCCEEEECCCCHHHHHHHHHHHCC
Q ss_conf 7967888504553-0689999970687883278641121-----------33-346981783011220799999997313
Q gi|254780313|r 67 SNRRIVDLGSSPG-SWSQVAARITGSNANNTRVVAIDIL-----------DM-EPILGVKFFKFDFLDLDSWEFIRQAIG 133 (227)
Q Consensus 67 ~g~~VlDLGaaPG-gWsQva~~~~~~~~~~~~VigVDl~-----------~~-~~i~gv~~~~gDi~~~~~~~~i~~~l~ 133 (227)
.|.++|=.|++-| |--.-+++.....|- +|+-.|+. .+ ++...+.++++|+++++..+.+.+...
T Consensus 6 ~GK~alVTGaag~~GiG~aia~~la~~GA--~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 83 (259)
T PRK07370 6 TGKKALVTGIANNRSIAWGIAQQLHAAGA--ELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCNVQDDAQIEEVFETIK 83 (259)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCC--EEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHH
T ss_conf 99989997989985799999999998699--9999947870135899999998412864899912899999999999999
Q ss_pred ---CCCCEEEECCCHH----HCCC-CCC---HHHHHHHHHHHH----HHHHHHCCCCCCEEEEE
Q ss_conf ---8874897532021----1022-210---157889899988----98764114877469999
Q gi|254780313|r 134 ---GNPDLVLSDMAYP----TIGH-RKI---DHLRTMSLCEAA----TFFALEMLNIGGDFLVK 182 (227)
Q Consensus 134 ---~~~DlVlSDmapn----~SG~-~~~---D~~~~~~L~~~a----l~~A~~~Lk~gG~fV~K 182 (227)
++.|+++.-.+.. ..|. .++ |-.+.+++.... ...+...++++|..|.=
T Consensus 84 ~~~G~iDilVnna~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~g~Ii~i 147 (259)
T PRK07370 84 QKWGQLDILVHCLAFAGKEELSGDFSATSREGFARALEISAYSLAPLCRAAKPLMSEGGSIVTL 147 (259)
T ss_pred HHHCCCCEEEEEECCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 9858987798630114643367992559999999999998799999999998860458853127
No 418
>COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]
Probab=20.51 E-value=44 Score=14.69 Aligned_cols=115 Identities=17% Similarity=0.130 Sum_probs=55.1
Q ss_pred HHHHHHCCCCCCEEEEEECC--------------CCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCC
Q ss_conf 99997068788327864112--------------1333469817830112207999999973138874897532021102
Q gi|254780313|r 84 VAARITGSNANNTRVVAIDI--------------LDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIG 149 (227)
Q Consensus 84 va~~~~~~~~~~~~VigVDl--------------~~~~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDmapn~SG 149 (227)
|.+++.-+.|. .|.|+.- .+....+..+++.||.+|..+...+.+.. .+|-|-.=+|...-|
T Consensus 17 YLa~lLLekGY--~VhGi~Rrss~~n~~ri~L~~~~~~~~~~l~l~~gDLtD~~~l~r~l~~v--~PdEIYNLaAQS~V~ 92 (345)
T COG1089 17 YLAELLLEKGY--EVHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLHYGDLTDSSNLLRILEEV--QPDEIYNLAAQSHVG 92 (345)
T ss_pred HHHHHHHHCCC--EEEEEEECCCCCCCCCCHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHC--CCHHHEECCCCCCCC
T ss_conf 99999985694--89878603355776530111165557861799965543568899999860--944533034323455
Q ss_pred C--------CCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHCCEEEEECCCC
Q ss_conf 2--------210157889899988987641148774699993059998999999986258469976866
Q gi|254780313|r 150 H--------RKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVA 210 (227)
Q Consensus 150 ~--------~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~~~F~~V~~~KP~a 210 (227)
. -++|......|.++ .+.|. .-=++++|.+..+.|=.....--++-..|.|.|
T Consensus 93 vSFe~P~~T~~~~~iGtlrlLEa-----iR~~~---~~~~rfYQAStSE~fG~v~~~pq~E~TPFyPrS 153 (345)
T COG1089 93 VSFEQPEYTADVDAIGTLRLLEA-----IRILG---EKKTRFYQASTSELYGLVQEIPQKETTPFYPRS 153 (345)
T ss_pred CCCCCCCEEEEECHHHHHHHHHH-----HHHHC---CCCCEEEECCCHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 30358640253100678899999-----99748---766079965617760676667544689998897
No 419
>PRK12937 short chain dehydrogenase; Provisional
Probab=20.49 E-value=65 Score=13.65 Aligned_cols=112 Identities=18% Similarity=0.104 Sum_probs=59.3
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC----------CC-CCCCCEEEECCCCHHHHHHHHHHHCC--
Q ss_conf 796788850455306899999706878832786411213----------33-46981783011220799999997313--
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD----------ME-PILGVKFFKFDFLDLDSWEFIRQAIG-- 133 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~----------~~-~i~gv~~~~gDi~~~~~~~~i~~~l~-- 133 (227)
.|.++|=-|++-| -=.-+++.....|. .|+-.+... ++ .-..+..+++|+.+.+..+.+.+...
T Consensus 4 sgK~alVTGgs~G-IG~aia~~la~~Ga--~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~v~~~~~~ 80 (245)
T PRK12937 4 SNKVAIVTGASRG-IGAAIARRLAADGF--AVAVNYAGSAAMADELVEEIEAAGGRAIAVQADVADAAAVDRLFEAAETA 80 (245)
T ss_pred CCCEEEEECCCCH-HHHHHHHHHHHCCC--EEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 9988999485778-99999999998799--99997699868999999999965995899983789999999999999998
Q ss_pred -CCCCEEEECCCHHHCCC-CCC---HHHHHHHHHHHH----HHHHHHCCCCCCEEEE
Q ss_conf -88748975320211022-210---157889899988----9876411487746999
Q gi|254780313|r 134 -GNPDLVLSDMAYPTIGH-RKI---DHLRTMSLCEAA----TFFALEMLNIGGDFLV 181 (227)
Q Consensus 134 -~~~DlVlSDmapn~SG~-~~~---D~~~~~~L~~~a----l~~A~~~Lk~gG~fV~ 181 (227)
++.|+++.-.+....+. .+. |-.+.++++... +..+...|+++|..|.
T Consensus 81 ~g~iDilVnNAg~~~~~~~~~~~~e~w~~~~~vNl~~~~~~~~~~~~~m~~~G~IIn 137 (245)
T PRK12937 81 FGRIDVLVNSAGIMPLAPIADGDLEGFDRTIAVNLRGAFNVLGEAARHLRRGGRIIN 137 (245)
T ss_pred HCCCCEEEEECCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 199889998054899988134999999999999859999999999999972882999
No 420
>pfam03269 DUF268 Caenorhabditis protein of unknown function, DUF268.
Probab=20.41 E-value=65 Score=13.64 Aligned_cols=126 Identities=16% Similarity=0.171 Sum_probs=65.1
Q ss_pred CCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCC----CCCEEEECCCCHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf 967888504553068999997068788327864112133346----9817830112207999999973138874897532
Q gi|254780313|r 68 NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPI----LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDM 143 (227)
Q Consensus 68 g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~i----~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDm 143 (227)
|..+|=+|+ ---|.++.+-..|++ .|+-|+.+..+-. +.+.. |.-.+..+.... ..+.||.++|=-
T Consensus 2 gk~glVvGS-~~PWvE~~aL~~GA~----~vlTvEYn~l~i~~~~~~rlss----i~p~ef~~~~~~-~~~~FD~a~SfS 71 (177)
T pfam03269 2 GKSGVVIGS-MQPWVEVSALQNGAS----KILTVEYNKLTIQEEFRDRLSS----ILPTDFAKNFKK-YAESFDFAASFS 71 (177)
T ss_pred CCEEEEECC-CCHHHHHHHHHCCCC----CEEEEEECCCCCCCHHHHCCCC----CCHHHHHHHHHH-HCCCEEEEEEEE
T ss_conf 951899847-753999999981887----3489972355566133210011----568899999875-235323899961
Q ss_pred CHHHCCCCC----CHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHH----------HHHHHHHCCEEEEEC
Q ss_conf 021102221----0157889899988987641148774699993059998999----------999986258469976
Q gi|254780313|r 144 AYPTIGHRK----IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI----------LCLLKKHFQKVIHVK 207 (227)
Q Consensus 144 apn~SG~~~----~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l----------~~~l~~~F~~V~~~K 207 (227)
+..-+|..- +|...- ..++.-...+|++||.|.+-+=-|.+...+ +..|-.-|+-+-.|-
T Consensus 72 SiEH~GLGRYGDpidp~Gd----lk~m~~i~~~Lk~~G~l~l~vPiG~d~v~fN~HRiYG~~Rl~~m~~Gfewi~tfs 145 (177)
T pfam03269 72 SIEHSGLGRYGDPIDPIGD----LREMLKIKCVLKKGGLLFLGLPLGTDAIIFNAHRIYGSVRLAMMMYGFEWIDTFS 145 (177)
T ss_pred EEEECCCCCCCCCCCCCCC----HHHHHHHHHHHCCCCEEEEEECCCCCCEEEECCEEECHHHHHHHHCCCEEEEECC
T ss_conf 2444056556897798510----9999999986178967999953777616870340234668899864846654417
No 421
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family; InterPro: IPR014188 This entry represents a subfamily of the alcohol dehydrogenase, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This entry includes YhdH from Escherichia coli and YhfP from Bacillus subtilis both of which bind NADPH or NAD, but not zinc. Both proteins have been studied crystallographically for insight into function. .
Probab=20.41 E-value=34 Score=15.39 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=13.6
Q ss_pred CCCCCCEEEEEEC-----CCCHHHHHH
Q ss_conf 3137967888504-----553068999
Q gi|254780313|r 64 ILQSNRRIVDLGS-----SPGSWSQVA 85 (227)
Q Consensus 64 l~k~g~~VlDLGa-----aPGgWsQva 85 (227)
-|++|+.||=-|. ..||++|||
T Consensus 77 ~F~~GD~VivTGyglG~~H~GGysqya 103 (330)
T TIGR02823 77 RFRPGDEVIVTGYGLGVSHDGGYSQYA 103 (330)
T ss_pred CCCCCCEEEEEEECCCCCCCCCCEEEE
T ss_conf 757887189974024565157622356
No 422
>KOG3201 consensus
Probab=20.35 E-value=65 Score=13.63 Aligned_cols=119 Identities=19% Similarity=0.215 Sum_probs=55.6
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEE-CC----CCH-----HHHHHHHHHHCCCCC
Q ss_conf 79678885045530689999970687883278641121333469817830-11----220-----799999997313887
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFK-FD----FLD-----LDSWEFIRQAIGGNP 136 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~i~gv~~~~-gD----i~~-----~~~~~~i~~~l~~~~ 136 (227)
.|..|++|| ||++-.|.-.+.-.....-|.--|-. ++.+.+|.-+. -+ ++. -.............|
T Consensus 29 rg~~ilelg---ggft~laglmia~~a~~~~v~ltdgn-e~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tF 104 (201)
T KOG3201 29 RGRRILELG---GGFTGLAGLMIACKAPDSSVWLTDGN-EESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTF 104 (201)
T ss_pred HHHHHHHHC---CCHHHHHHHHEEEECCCCEEEEECCC-HHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHCCC
T ss_conf 678898726---74465545520453587358871697-89999799998512002565000347877644888751702
Q ss_pred CEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEE-EEEEECCCCHHHHHHHHHHHC
Q ss_conf 4897532021102221015788989998898764114877469-999305999899999998625
Q gi|254780313|r 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF-LVKTFQGGTTNDILCLLKKHF 200 (227)
Q Consensus 137 DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~f-V~K~F~G~~~~~l~~~l~~~F 200 (227)
|.|++- ++. ..|+.+ .+..+..-..|+|.|.- +.---+|...+.|.+.+...-
T Consensus 105 DiIlaA---DCl---FfdE~h-----~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de~~~~g 158 (201)
T KOG3201 105 DIILAA---DCL---FFDEHH-----ESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDEVGTVG 158 (201)
T ss_pred CEEEEC---CCH---HHHHHH-----HHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCE
T ss_conf 279860---102---588999-----999999999858466616766755556999999987540
No 423
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=20.27 E-value=65 Score=13.62 Aligned_cols=112 Identities=13% Similarity=0.128 Sum_probs=57.7
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CCC-CCCCEEEECCCCHHHHHHHHHHHCC---
Q ss_conf 796788850455306899999706878832786411213---------334-6981783011220799999997313---
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------MEP-ILGVKFFKFDFLDLDSWEFIRQAIG--- 133 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~~-i~gv~~~~gDi~~~~~~~~i~~~l~--- 133 (227)
.|.++|=.|++-| -=.-+++.....|. .|+.+|... ++. -..+.++++|+++++..+.+.+...
T Consensus 3 ~gK~alITGas~G-IG~aia~~la~~Ga--~V~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~ 79 (258)
T PRK12429 3 KGKTALVTGAASG-IGLEIALALAKEGA--KVVIADLNDEAAAKAAEAIKKAGGKAIGVAMDVTDEEAINAGIDKVVETF 79 (258)
T ss_pred CCCEEEEECCCCH-HHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 9598999488758-99999999998799--99999798899999999998449918999835899999999999999982
Q ss_pred CCCCEEEECCCHHHCC-CCCC---HHHHHHHHHHHHH----HHHHHCCC--CCCEEEE
Q ss_conf 8874897532021102-2210---1578898999889----87641148--7746999
Q gi|254780313|r 134 GNPDLVLSDMAYPTIG-HRKI---DHLRTMSLCEAAT----FFALEMLN--IGGDFLV 181 (227)
Q Consensus 134 ~~~DlVlSDmapn~SG-~~~~---D~~~~~~L~~~al----~~A~~~Lk--~gG~fV~ 181 (227)
++.|+++.-.+....+ ..+. |-...++++.... ..+...|+ .+|..|.
T Consensus 80 g~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~~~G~Iv~ 137 (258)
T PRK12429 80 GGVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPHMKAQKWGRIIN 137 (258)
T ss_pred CCCCEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHEEEHHHHHHHHHHCCCCEEEE
T ss_conf 9970999899888998815599999999999762321220067777664359928999
No 424
>PRK07035 short chain dehydrogenase; Provisional
Probab=20.27 E-value=65 Score=13.62 Aligned_cols=77 Identities=12% Similarity=0.150 Sum_probs=46.7
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CC-CCCCCEEEECCCCHHHHHHHHHHHCC---
Q ss_conf 796788850455306899999706878832786411213---------33-46981783011220799999997313---
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------ME-PILGVKFFKFDFLDLDSWEFIRQAIG--- 133 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~-~i~gv~~~~gDi~~~~~~~~i~~~l~--- 133 (227)
.|.++|=.|++-| -=.-+++.....|. .|+.+|... +. .-..+..+++|+.+++..+.+.+...
T Consensus 7 ~gKvalITGas~G-IG~aia~~la~~Ga--~V~i~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 83 (252)
T PRK07035 7 TGKIALVTGASRG-IGEAIAKLLAQQGA--HVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAQIRERH 83 (252)
T ss_pred CCCEEEEECCCCH-HHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 8998999588749-99999999998799--89999798899999999999649957999824899999999999999982
Q ss_pred CCCCEEEECCCHH
Q ss_conf 8874897532021
Q gi|254780313|r 134 GNPDLVLSDMAYP 146 (227)
Q Consensus 134 ~~~DlVlSDmapn 146 (227)
+++|+++.-.+.+
T Consensus 84 G~iDilVnnAg~~ 96 (252)
T PRK07035 84 GRLDILVNNAAAN 96 (252)
T ss_pred CCCCEEEECCCCC
T ss_conf 9977898768558
No 425
>KOG3115 consensus
Probab=20.11 E-value=52 Score=14.22 Aligned_cols=32 Identities=19% Similarity=0.236 Sum_probs=22.5
Q ss_pred CEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCC
Q ss_conf 678885045530689999970687883278641121
Q gi|254780313|r 69 RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL 104 (227)
Q Consensus 69 ~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~ 104 (227)
--..|+||+=||.+--.+.+. .+..|+|..|.
T Consensus 62 vefaDIGCGyGGLlv~Lsp~f----PdtLiLGmEIR 93 (249)
T KOG3115 62 VEFADIGCGYGGLLMKLAPKF----PDTLILGMEIR 93 (249)
T ss_pred CEEEEECCCCCCHHHHCCCCC----CCCEEEEEHHH
T ss_conf 427860467650101205468----63012200126
No 426
>KOG3206 consensus
Probab=20.02 E-value=66 Score=13.58 Aligned_cols=99 Identities=20% Similarity=0.211 Sum_probs=51.3
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCC--------CCCC-----EEEE---EECCCCHHHHH
Q ss_conf 464007999996408999999988184479999999998645831--------3796-----7888---50455306899
Q gi|254780313|r 21 SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL--------QSNR-----RIVD---LGSSPGSWSQV 84 (227)
Q Consensus 21 ~~~~ss~~W~~r~~~D~y~~~Ak~~gyrsRaafKL~eId~kf~l~--------k~g~-----~VlD---LGaaPGgWsQv 84 (227)
.++.|-++|+++|.--.|-..-+ ..--+-|.-+|.|+.++-.+- -||+ +|-= |-.-||-|+-|
T Consensus 107 qRtdSvr~~kk~~~~gryn~~~~-~q~ea~~~~~~~e~~~~~~i~vG~rCeVtv~G~~~Rrg~vrYvG~~~~k~G~wiGV 185 (234)
T KOG3206 107 QRTDSVRRFKKKHGYGRYNAEEQ-AQAEAEAKQDLAEERAQATIAVGRRCEVTVPGQAPRRGTVRYVGPLEFKPGYWIGV 185 (234)
T ss_pred HHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCEEEEEECCCCCCCCEEEEE
T ss_conf 65589999999851154341326-58988867779999873005137806895389787514788832468888428877
Q ss_pred HHHH-HCCCCCCEEEEEECCCCCCCCCCC-----EEEECCCCHH
Q ss_conf 9997-068788327864112133346981-----7830112207
Q gi|254780313|r 85 AARI-TGSNANNTRVVAIDILDMEPILGV-----KFFKFDFLDL 122 (227)
Q Consensus 85 a~~~-~~~~~~~~~VigVDl~~~~~i~gv-----~~~~gDi~~~ 122 (227)
--.. +| .++|.|-|+-+-++.|..|- ..-.||+-+.
T Consensus 186 eydEplG--KnDGsv~G~ryF~c~p~yGgfVrP~~V~Vgdfpee 227 (234)
T KOG3206 186 EYDEPLG--KNDGSVNGKRYFECAPKYGGFVRPRAVTVGDFPEE 227 (234)
T ss_pred ECCCCCC--CCCCCCCCEEEEECCCCCCCCCCCCEEEECCCCHH
T ss_conf 5477666--67773266686542776687016515662688813
Done!