HHsearch alignment for GI: 254780313 and conserved domain: pfam01170
>pfam01170 UPF0020 Putative RNA methylase family UPF0020. This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains.
Probab=97.41 E-value=0.0011 Score=43.51 Aligned_cols=109 Identities=22% Similarity=0.205 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC-----------CCCC-CCEEE
Q ss_conf 47999999999864583137967888504553068999997068788327864112133-----------3469-81783
Q gi|254780313|r 48 RARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM-----------EPIL-GVKFF 115 (227)
Q Consensus 48 rsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~-----------~~i~-gv~~~ 115 (227)
T Consensus 13 ~~~lAa~l~~la~----~~~g~~vlDP~CGSGtilIEAa~-~~~---~~~~~G~Did~~~v~~A~~N~~~~g~~~~i~~~ 84 (171)
T pfam01170 13 KATLARAMVNLAG----WKPGDPLLDPFCGSGTILIEAAL-MGA---NVALYGSDIDRRMVRGARINAEAAGVGDKIEFV 84 (171)
T ss_pred CHHHHHHHHHHHC----CCCCCEEEECCCCCCHHHHHHHH-HHC---CCCCEEEECCHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 8999999999858----99999788689987899999999-613---589536758799999999999982899846999
Q ss_pred ECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 01122079999999731388748975320211022210157889899988987641148
Q gi|254780313|r 116 KFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLN 174 (227)
Q Consensus 116 ~gDi~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk 174 (227)
T Consensus 85 ~~D~~~l~-------~~~~~~d~Iv~nP--P-YG~r~~~~~~~~~ly~~~~~~~~~~~~ 133 (171)
T pfam01170 85 QADAADLP-------LLNGSVDTIVTDP--P-YGIRIGSKGALEKLYPAFLDEAKRVLR 133 (171)
T ss_pred ECCHHHCC-------CCCCCCEEEEECC--C-CCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 76665387-------9878831899889--8-201136545699999999999998689