HHsearch alignment for GI: 254780313 and conserved domain: pfam01728

>pfam01728 FtsJ FtsJ-like methyltransferase. This family consists of FtsJ from various bacterial and archaeal sources FtsJ is a methyltransferase, but actually has no effect on cell division. FtsJ's substrate is the 23S rRNA. The 1.5 A crystal structure of FtsJ in complex with its cofactor S-adenosylmethionine revealed that FtsJ has a methyltransferase fold. This family also includes the N terminus of flaviviral NS5 protein. It has been hypothesized that the N-terminal domain of NS5 is a methyltransferase involved in viral RNA capping.
Probab=100.00  E-value=0  Score=383.66  Aligned_cols=175  Identities=39%  Similarity=0.600  Sum_probs=168.6

Q ss_pred             CHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEECCCCHHHHHH
Q ss_conf             44799999999986458313796788850455306899999706878832786411213334698178301122079999
Q gi|254780313|r   47 WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWE  126 (227)
Q Consensus        47 yrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~i~gv~~~~gDi~~~~~~~  126 (227)
T Consensus         1 y~sRa~~KL~ei~~~~~l~~~~~~vlDLg~aPGgwsq~~~~~~~----~~~v~~vDl~~~~~~~~~~~i~gDi~~~~~~~   76 (176)
T pfam01728         1 YVSRAAFKLLEIDERFGLKPGGKTVLDLGAAPGGFSQVLLERGA----KGRVVAVDLGPMKPIQGVTFLRGDITDPETLE   76 (176)
T ss_pred             CCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHCC----CCEEEEEECCCCCCCCCCEEECCCCCCHHHHH
T ss_conf             96749999999999769887999999968999769999998566----87399997344656778456516766878999


Q ss_pred             HHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHH-HHHHHHHHHCCEEEE
Q ss_conf             9997313887489753202110222101578898999889876411487746999930599989-999999862584699
Q gi|254780313|r  127 FIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTN-DILCLLKKHFQKVIH  205 (227)
Q Consensus       127 ~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~-~l~~~l~~~F~~V~~  205 (227)
T Consensus        77 ~i~~~~~~~~DlV~sD~a~~~~g~~~~d~~~s~~L~~~~l~~a~~~L~~gG~fv~K~f~~~~~~~~l~~~l~~~F~~v~~  156 (176)
T pfam01728        77 KLLELLPGKVDLVLCDGAPNVSGLENTDSFISLRLVLAALLLALEVLRPGGNFVVKLFKGFEFSVELLYKLKKGFEKVGI  156 (176)
T ss_pred             HHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHCCCEEEE
T ss_conf             99997399846897336656567733478999999999999999982437639999982787649999999831788999


Q ss_pred             ECCCCCCCCCCEEEEEECCC
Q ss_conf             76866575582498983075
Q gi|254780313|r  206 VKPVASRAESVEMFLLAKGF  225 (227)
Q Consensus       206 ~KP~aSR~~S~E~Ylv~~gf  225 (227)
T Consensus       157 ~KP~aSR~~s~E~Yiv~~~f  176 (176)
T pfam01728       157 FKPPASRPSSSEEYLVCLGF  176 (176)
T ss_pred             ECCCCCCCCCCEEEEEECCC
T ss_conf             86899799886699996289