HHsearch alignment for GI: 254780313 and conserved domain: pfam01728
>pfam01728 FtsJ FtsJ-like methyltransferase. This family consists of FtsJ from various bacterial and archaeal sources FtsJ is a methyltransferase, but actually has no effect on cell division. FtsJ's substrate is the 23S rRNA. The 1.5 A crystal structure of FtsJ in complex with its cofactor S-adenosylmethionine revealed that FtsJ has a methyltransferase fold. This family also includes the N terminus of flaviviral NS5 protein. It has been hypothesized that the N-terminal domain of NS5 is a methyltransferase involved in viral RNA capping.
Probab=100.00 E-value=0 Score=383.66 Aligned_cols=175 Identities=39% Similarity=0.600 Sum_probs=168.6
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEECCCCHHHHHH
Q ss_conf 44799999999986458313796788850455306899999706878832786411213334698178301122079999
Q gi|254780313|r 47 WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWE 126 (227)
Q Consensus 47 yrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~i~gv~~~~gDi~~~~~~~ 126 (227)
T Consensus 1 y~sRa~~KL~ei~~~~~l~~~~~~vlDLg~aPGgwsq~~~~~~~----~~~v~~vDl~~~~~~~~~~~i~gDi~~~~~~~ 76 (176)
T pfam01728 1 YVSRAAFKLLEIDERFGLKPGGKTVLDLGAAPGGFSQVLLERGA----KGRVVAVDLGPMKPIQGVTFLRGDITDPETLE 76 (176)
T ss_pred CCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHCC----CCEEEEEECCCCCCCCCCEEECCCCCCHHHHH
T ss_conf 96749999999999769887999999968999769999998566----87399997344656778456516766878999
Q ss_pred HHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHH-HHHHHHHHHCCEEEE
Q ss_conf 9997313887489753202110222101578898999889876411487746999930599989-999999862584699
Q gi|254780313|r 127 FIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTN-DILCLLKKHFQKVIH 205 (227)
Q Consensus 127 ~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~-~l~~~l~~~F~~V~~ 205 (227)
T Consensus 77 ~i~~~~~~~~DlV~sD~a~~~~g~~~~d~~~s~~L~~~~l~~a~~~L~~gG~fv~K~f~~~~~~~~l~~~l~~~F~~v~~ 156 (176)
T pfam01728 77 KLLELLPGKVDLVLCDGAPNVSGLENTDSFISLRLVLAALLLALEVLRPGGNFVVKLFKGFEFSVELLYKLKKGFEKVGI 156 (176)
T ss_pred HHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHCCCEEEE
T ss_conf 99997399846897336656567733478999999999999999982437639999982787649999999831788999
Q ss_pred ECCCCCCCCCCEEEEEECCC
Q ss_conf 76866575582498983075
Q gi|254780313|r 206 VKPVASRAESVEMFLLAKGF 225 (227)
Q Consensus 206 ~KP~aSR~~S~E~Ylv~~gf 225 (227)
T Consensus 157 ~KP~aSR~~s~E~Yiv~~~f 176 (176)
T pfam01728 157 FKPPASRPSSSEEYLVCLGF 176 (176)
T ss_pred ECCCCCCCCCCEEEEEECCC
T ss_conf 86899799886699996289