HHsearch alignment for GI: 254780313 and conserved domain: pfam05185
>pfam05185 PRMT5 PRMT5 arginine-N-methyltransferase. The human homologue of yeast Skb1 (Shk1 kinase-binding protein 1) is PRMT5, an arginine-N-methyltransferase. These proteins appear to be key mitotic regulators. They play a role in Jak signalling in higher eukaryotes.
Probab=92.41 E-value=0.39 Score=27.53 Aligned_cols=99 Identities=14% Similarity=0.135 Sum_probs=62.3
Q ss_pred CEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC--------C-CC--C-CCCEEEECCCCHHHHHHHHHHHCCCCC
Q ss_conf 6788850455306899999706878832786411213--------3-34--6-981783011220799999997313887
Q gi|254780313|r 69 RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD--------M-EP--I-LGVKFFKFDFLDLDSWEFIRQAIGGNP 136 (227)
Q Consensus 69 ~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~--------~-~~--i-~gv~~~~gDi~~~~~~~~i~~~l~~~~ 136 (227)
T Consensus 188 ~vI~VvGAGRGPLV~~~l~A~~~~~~~v~i~AVEKNpnA~vtL~~r~n~~~W~~~V~ii~~DMR~w~--------~p~k~ 259 (447)
T pfam05185 188 LVILVVGAGRGPLVDRALRAAEETGRKVKIYAVEKNPNAVVTLQKRVNFEEWGDKVTLISSDMREWK--------GPEKA 259 (447)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCHHCCC--------CCCCC
T ss_conf 6999985896489999999999819966999995687799999998505431780699908000579--------98773
Q ss_pred CEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf 489753202110222101578898999889876411487746999930
Q gi|254780313|r 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF 184 (227)
Q Consensus 137 DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F 184 (227)
T Consensus 260 Di~VSELLGS---------FGDNELSPECLdg~q~~lk~~gIsIP~sY 298 (447)
T pfam05185 260 DILVSELLGS---------FGDNELSPECLDGAQRFLKPDGISIPQSY 298 (447)
T ss_pred CEEEEECCCC---------CCCCCCCHHHHHHHHHHCCCCCEEECHHH
T ss_conf 5897521166---------66655797787789974689846826213