HHsearch alignment for GI: 254780313 and conserved domain: pfam05206

>pfam05206 TRM13 Methyltransferase TRM13. This is a family of eukaryotic proteins which are responsible for 2'-O-methylation of tRNA at position 4. TRM13 shows no sequence similarity to other known methyltransferases.
Probab=93.64  E-value=0.5  Score=26.88  Aligned_cols=101  Identities=24%  Similarity=0.323  Sum_probs=60.7

Q ss_pred             HHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCC-CCEEEEEECCCC----C------CCCCCCEEEECCCCHHH
Q ss_conf             999986458313796788850455306899999706878-832786411213----3------34698178301122079
Q gi|254780313|r   55 LLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA-NNTRVVAIDILD----M------EPILGVKFFKFDFLDLD  123 (227)
Q Consensus        55 L~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~-~~~~VigVDl~~----~------~~i~gv~~~~gDi~~~~  123 (227)
T Consensus         6 lig~le~~~ll~~~~~~vEfGAGrG~LS~~v~~~l~~~~~~~~~~~LIDR~s~R~K~D~k~r~~~~~~~~R~riDI~DL~   85 (256)
T pfam05206         6 LIGNLEELGLLSPSTAYVEFGAGKGELSRYLNQCLLEDQLSNPGFVLIDRASNRLKADRKIRKDESPPIKRLRIDIKDLN   85 (256)
T ss_pred             HHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHCCCCCCEEEEEEEHHHCC
T ss_conf             99999973998999889997896469999999985234566763899988887754311021378882589995325457


Q ss_pred             HHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf             99999973138874897532021102221015788989998898764114
Q gi|254780313|r  124 SWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEML  173 (227)
Q Consensus       124 ~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~L  173 (227)
T Consensus        86 L-~~v~~~~~~~~~va-----------------i~KHLCG~ATDLtLrcl  117 (256)
T pfam05206        86 L-DKLLSLLKGKPVVA-----------------VSKHLCGAATDLTLRCL  117 (256)
T ss_pred             H-HHHHHHCCCCCEEE-----------------EECCCCCCHHHHHHHHH
T ss_conf             7-66443106797799-----------------94113663475999987