HHsearch alignment for GI: 254780313 and conserved domain: pfam05958
>pfam05958 tRNA_U5-meth_tr tRNA (Uracil-5-)-methyltransferase. This family consists of (Uracil-5-)-methyltransferases EC:2.1.1.35 from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity.
Probab=96.01 E-value=0.047 Score=33.31 Aligned_cols=89 Identities=19% Similarity=0.235 Sum_probs=56.1
Q ss_pred HHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC-----------CCCCCCCEEEECCCCH
Q ss_conf 99999986458313796788850455306899999706878832786411213-----------3346981783011220
Q gi|254780313|r 53 YKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-----------MEPILGVKFFKFDFLD 121 (227)
Q Consensus 53 fKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~-----------~~~i~gv~~~~gDi~~ 121 (227)
T Consensus 184 ~~l~~~a~~~~~~~~~-~vlDlYcG~Gtfsl~lA~~~~------~V~GvE~~~~AV~~A~~Na~~N~i~Nv~f~~~~~~~ 256 (353)
T pfam05958 184 IKMLEWACEVTQGSKG-DLLELYCGNGNFSLALAQNFR------RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred HHHHHHHHHHHHCCCC-CEEEEECCCCHHHHHHHHHCC------EEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHH
T ss_conf 9999999998626899-589984688888899986478------799996259999999998998699864999728999
Q ss_pred HH-HHHHHHHH--C------CCCCCEEEECCCHHHCCC
Q ss_conf 79-99999973--1------388748975320211022
Q gi|254780313|r 122 LD-SWEFIRQA--I------GGNPDLVLSDMAYPTIGH 150 (227)
Q Consensus 122 ~~-~~~~i~~~--l------~~~~DlVlSDmapn~SG~ 150 (227)
T Consensus 257 ~~~~~~~~~~~~~~~~i~~~~~~~d~vvlD--PPR~G~ 292 (353)
T pfam05958 257 FTQAMNGVREFRRLKGIDLKSYNCSTIFVD--PPRAGL 292 (353)
T ss_pred HHHHHHCCCHHHHCCCCCCCCCCCCCEEEC--CCCCCC
T ss_conf 999875242233203666322467725848--987777