HHsearch alignment for GI: 254780313 and conserved domain: pfam06962

>pfam06962 rRNA_methylase Putative rRNA methylase. This family contains a number of putative rRNA methylases. Note that many family members are hypothetical proteins.
Probab=92.75  E-value=0.86  Score=25.40  Aligned_cols=83  Identities=23%  Similarity=0.216  Sum_probs=52.5

Q ss_pred             EEEECCCCC------------CCCCCCEEEECCCCHHHHHHHHHHHCC-CCCCEEEECCCHHHCCCCCCHHHHHHHHHHH
Q ss_conf             864112133------------346981783011220799999997313-8874897532021102221015788989998
Q gi|254780313|r   98 VVAIDILDM------------EPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEA  164 (227)
Q Consensus        98 VigVDl~~~------------~~i~gv~~~~gDi~~~~~~~~i~~~l~-~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~  164 (227)
T Consensus         2 V~aFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~~------He~l~~~v~~~~i~~~~FNLGYLPggDk~i~T~--~~tTi~   73 (140)
T pfam06962         2 VYAFDIQEEALENTKEKLEQAGLSEIVELILDS------HENIDEYIPEGPVKAAIFNLGYLPGGDKSITTK--PDTTLE   73 (140)
T ss_pred             EEEEECHHHHHHHHHHHHHHCCCCCCEEEEECC------HHHHHHHCCCCCCCEEEEECCCCCCCCCCCEEC--CHHHHH
T ss_conf             579960999999999999965987568999779------888986376467668999667688999875877--720999


Q ss_pred             HHHHHHHCCCCCCEEEEEEECCCC
Q ss_conf             898764114877469999305999
Q gi|254780313|r  165 ATFFALEMLNIGGDFLVKTFQGGT  188 (227)
Q Consensus       165 al~~A~~~Lk~gG~fV~K~F~G~~  188 (227)
T Consensus        74 Al~~al~lL~~gG~i~i~~Y~GH~   97 (140)
T pfam06962        74 AIKKLLELLKPGGLIILVIYHGHE   97 (140)
T ss_pred             HHHHHHHHHCCCCEEEEEEECCCC
T ss_conf             999999963669899999979999