HHsearch alignment for GI: 254780313 and conserved domain: pfam06962
>pfam06962 rRNA_methylase Putative rRNA methylase. This family contains a number of putative rRNA methylases. Note that many family members are hypothetical proteins.
Probab=92.75 E-value=0.86 Score=25.40 Aligned_cols=83 Identities=23% Similarity=0.216 Sum_probs=52.5
Q ss_pred EEEECCCCC------------CCCCCCEEEECCCCHHHHHHHHHHHCC-CCCCEEEECCCHHHCCCCCCHHHHHHHHHHH
Q ss_conf 864112133------------346981783011220799999997313-8874897532021102221015788989998
Q gi|254780313|r 98 VVAIDILDM------------EPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEA 164 (227)
Q Consensus 98 VigVDl~~~------------~~i~gv~~~~gDi~~~~~~~~i~~~l~-~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~ 164 (227)
T Consensus 2 V~aFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~~------He~l~~~v~~~~i~~~~FNLGYLPggDk~i~T~--~~tTi~ 73 (140)
T pfam06962 2 VYAFDIQEEALENTKEKLEQAGLSEIVELILDS------HENIDEYIPEGPVKAAIFNLGYLPGGDKSITTK--PDTTLE 73 (140)
T ss_pred EEEEECHHHHHHHHHHHHHHCCCCCCEEEEECC------HHHHHHHCCCCCCCEEEEECCCCCCCCCCCEEC--CHHHHH
T ss_conf 579960999999999999965987568999779------888986376467668999667688999875877--720999
Q ss_pred HHHHHHHCCCCCCEEEEEEECCCC
Q ss_conf 898764114877469999305999
Q gi|254780313|r 165 ATFFALEMLNIGGDFLVKTFQGGT 188 (227)
Q Consensus 165 al~~A~~~Lk~gG~fV~K~F~G~~ 188 (227)
T Consensus 74 Al~~al~lL~~gG~i~i~~Y~GH~ 97 (140)
T pfam06962 74 AIKKLLELLKPGGLIILVIYHGHE 97 (140)
T ss_pred HHHHHHHHHCCCCEEEEEEECCCC
T ss_conf 999999963669899999979999