HHsearch alignment for GI: 254780313 and conserved domain: pfam07021
>pfam07021 MetW Methionine biosynthesis protein MetW. This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In Pseudomonas putida, as in gram-positive bacteria and certain fungi, the second and third steps are a direct sulfhydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells.
Probab=98.50 E-value=2.9e-07 Score=65.99 Aligned_cols=77 Identities=16% Similarity=0.221 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCC----CCCCCEEEECCCCHHHHH
Q ss_conf 9999999998645831379678885045530689999970687883278641121333----469817830112207999
Q gi|254780313|r 50 RSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME----PILGVKFFKFDFLDLDSW 125 (227)
Q Consensus 50 RaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~----~i~gv~~~~gDi~~~~~~ 125 (227)
T Consensus 1 R~D~~iI~-----~~I~~~srVLDlGCG~G~ll~~L~~~-----k~v~~~GvEid~~~v~~a~~kg~~Vi~~D~d~~--- 67 (193)
T pfam07021 1 RADFRYIA-----RLIPPGSRVLDLGCGDGSLLYLLQEE-----KQVDGRGIELDAAGVAECVAKGLSVIQGDADKG--- 67 (193)
T ss_pred CCHHHHHH-----HHCCCCCEEEEECCCCCHHHHHHHHC-----CCCCEEEECCCHHHHHHHHHCCCCEECCCHHHC---
T ss_conf 94689999-----86589698998368898999999876-----698769833899999999864795450774459---
Q ss_pred HHHHHHCCCCCCEEEE
Q ss_conf 9999731388748975
Q gi|254780313|r 126 EFIRQAIGGNPDLVLS 141 (227)
Q Consensus 126 ~~i~~~l~~~~DlVlS 141 (227)
T Consensus 68 --l~~f~d~sFD~VIl 81 (193)
T pfam07021 68 --LEHFPDKSFDYVIL 81 (193)
T ss_pred --HHHCCCCCCCEEEH
T ss_conf --74577678037869