HHsearch alignment for GI: 254780313 and conserved domain: smart00650
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=95.76 E-value=0.025 Score=35.00 Aligned_cols=100 Identities=15% Similarity=0.193 Sum_probs=63.4
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CCCCCCCEEEECCCCHHHHHHHHHHHCCCCC
Q ss_conf 3796788850455306899999706878832786411213---------3346981783011220799999997313887
Q gi|254780313|r 66 QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------MEPILGVKFFKFDFLDLDSWEFIRQAIGGNP 136 (227)
Q Consensus 66 k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~ 136 (227)
T Consensus 12 ~~~d~VlEIGPG~G~LT~~Ll~~~~------~v~aiE~D~~l~~~L~~~~~~~~n~~ii~~D~L~~~~~~-------~~~ 78 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLERAA------RVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPK-------LQP 78 (169)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHCC------CCCEEECCHHHHHHHHHHHCCCCCEEEEECCHHCCCCCC-------CCC
T ss_conf 9949799968970299999997316------353163788999999986410797799957111255311-------587
Q ss_pred CEEEECCCHHHCCC---CCCHHHH--HHHHHHHHHHHHHHCCCCCCE
Q ss_conf 48975320211022---2101578--898999889876411487746
Q gi|254780313|r 137 DLVLSDMAYPTIGH---RKIDHLR--TMSLCEAATFFALEMLNIGGD 178 (227)
Q Consensus 137 DlVlSDmapn~SG~---~~~D~~~--~~~L~~~al~~A~~~Lk~gG~ 178 (227)
T Consensus 79 ~~iv~NLPY~Iss~il~~ll~~~~~~~~~~lm~QkEvA~Ri~a~p~~ 125 (169)
T smart00650 79 YKVVGNLPYNISTPILFKLLEEPPAFRDAVLMVQKEVARRLAAKPGS 125 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 36993476301189999998626541266655399999998637898