RPSBLAST alignment of GI: 254780313 and protein with PDBid: 3lkz
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} Length = 321
Score = 94.5 bits (234), Expect = 2e-20
Identities = 29/176 (16%), Positives = 65/176 (36%), Gaps = 10/176 (5%)
Query: 50 RSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPI 109
R KL + E+ + + +++DLG G W A E
Sbjct: 78 RGTAKLRWLVERRFL-EPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGH--EEP 134
Query: 110 LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFA 169
V+ + ++ + + S + D +L D+ + +++ RT+ + E
Sbjct: 135 QLVQSYGWNIVTMKSGVDVFYRPSECCDTLLCDIG-ESSSSAEVEEHRTIRVLEMV---E 190
Query: 170 LEMLNIGGDFLVKTFQGGTTN--DILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
+ +F VK + + LL++ + + V+ SR + EM+ +++
Sbjct: 191 DWLHRGPREFCVKVLCPYMPKVIEKMELLQRRYGGGL-VRNPLSRNSTHEMYWVSR 245