RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780313|ref|YP_003064726.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Candidatus Liberibacter asiaticus str. psy62] (227 letters) >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* Length = 180 Score = 206 bits (524), Expect = 5e-54 Identities = 64/182 (35%), Positives = 102/182 (56%), Gaps = 4/182 (2%) Query: 46 GWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD 105 G R+R+ +KL +I + ++ + +VDLG++PG WSQ G R++A D+L Sbjct: 1 GLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIG---GKGRIIACDLLP 57 Query: 106 MEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEA 164 M+PI+GV F + DF D + + + +G + +V+SDMA G +D R M L E Sbjct: 58 MDPIVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVEL 117 Query: 165 ATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKG 224 A ++L GG F+VK FQG ++ L ++ F KV KP +SRA S E++++A G Sbjct: 118 ALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIVATG 177 Query: 225 FR 226 + Sbjct: 178 RK 179 >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransferase, viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* Length = 300 Score = 161 bits (408), Expect = 1e-40 Identities = 44/235 (18%), Positives = 82/235 (34%), Gaps = 24/235 (10%) Query: 6 GSSSRRGLTQKVKNRSCQGSSRDWLNRH-------INDPYVQRAQLEG------WRARSA 52 G ++ L + K R + R+ ++ +R EG +R A Sbjct: 9 GKAAGVTLGEVWK-RQLNMLGKQEFERYKVSDITEVDRTAARRYLKEGRTDVGISVSRGA 67 Query: 53 YKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGV 112 K+ ++E+ L+ R++DLG G WS AA + + I+ +PI Sbjct: 68 AKIRWLHERGY-LRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGH-EKPIHMQ 125 Query: 113 KFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEM 172 ++ + + D +L D+ + ++ RTM + E + Sbjct: 126 -TLGWNIVKFKDKSNVFTMPTEPSDTLLCDIGESSSNP-LVERDRTMKVLENFERW---K 180 Query: 173 LNIGGDFLVKTFQGGT--TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225 +F VK + L L+ F I P SR + EM+ ++ Sbjct: 181 HVNTENFCVKVLAPYHPDVIEKLERLQLRFGGGIVRVP-FSRNSTHEMYYISGAR 234 >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} Length = 191 Score = 160 bits (405), Expect = 3e-40 Identities = 55/185 (29%), Positives = 100/185 (54%), Gaps = 10/185 (5%) Query: 46 GWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD 105 R+R+A+KL + +++++++ ++++GSSPG W+QV N+ ++++ID+ + Sbjct: 4 QLRSRAAFKLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVL------NSLARKIISIDLQE 57 Query: 106 MEPILGVKFFKFDFLDLDSWEFIRQAI----GGNPDLVLSDMAYPTIGHRKIDHLRTMSL 161 ME I GV+F + D ++ I +A+ D V+SD G DH + + Sbjct: 58 MEEIAGVRFIRCDIFKETIFDDIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQI 117 Query: 162 CEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLL 221 + A+ L GG+ L+K FQG TND + + +K+F KP ASR S E++++ Sbjct: 118 GQRVMEIAVRYLRNGGNVLLKQFQGDMTNDFIAIWRKNFSSYKISKPPASRGSSSEIYIM 177 Query: 222 AKGFR 226 GF+ Sbjct: 178 FFGFK 182 >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum 3D7} Length = 201 Score = 158 bits (399), Expect = 1e-39 Identities = 66/198 (33%), Positives = 104/198 (52%), Gaps = 20/198 (10%) Query: 47 WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM 106 +R+R+AYKL++++ K+ L+ N+ I+D+G PGSW QV T + N + ID M Sbjct: 2 YRSRAAYKLIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKI--IGIDKKIM 59 Query: 107 EPILGVKFFKFDFLDLDSWE-----------------FIRQAIGGNP-DLVLSDMAYPTI 148 +PI V F + + + +++ + D++LSD A P I Sbjct: 60 DPIPNVYFIQGEIGKDNMNNIKNINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCI 119 Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208 G++ DHL + L + T F + +NIGG ++VK + G TN++ LK FQ V KP Sbjct: 120 GNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQTNNLKTYLKGMFQLVHTTKP 179 Query: 209 VASRAESVEMFLLAKGFR 226 ASR ES E++L+ K F Sbjct: 180 KASRNESREIYLVCKNFL 197 >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} Length = 196 Score = 153 bits (387), Expect = 3e-38 Identities = 65/187 (34%), Positives = 101/187 (54%), Gaps = 7/187 (3%) Query: 47 WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRV-----VAI 101 +R+RSA+KLL++NE+HQIL+ R++D G++PG+WSQVA + + + + + Sbjct: 2 YRSRSAFKLLEVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGV 61 Query: 102 DILDMEPILGVKFFKFDFLDLDSW--EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTM 159 D+L + P+ G F + + G D++LSDMA G R +DH R + Sbjct: 62 DLLHIFPLEGATFLCPADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLI 121 Query: 160 SLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMF 219 SLC ++L GG FL KT+ G + + L + FQ V +KP ASR ES E++ Sbjct: 122 SLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRLQRRLTEEFQNVRIIKPEASRKESSEVY 181 Query: 220 LLAKGFR 226 LA + Sbjct: 182 FLATQYH 188 >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, ATP-binding, capsid protein, cleavage on PAIR of basic residues; HET: GTA SAH; 1.45A {Yellow fever virus 17D} PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* Length = 277 Score = 148 bits (374), Expect = 1e-36 Identities = 39/235 (16%), Positives = 78/235 (33%), Gaps = 24/235 (10%) Query: 6 GSSSRRGLTQKVKNRSCQGSSRD----------WLNRHINDPYVQRAQLEG--WRARSAY 53 GS++ + L + K R ++R ++ +++ +R Sbjct: 2 GSANGKTLGEVWKRELNLLDKRQFELYKRTDIVEVDRDTARRHLAEGKVDTGVAVSRGTA 61 Query: 54 KLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVK 113 KL +E+ + + R++DLG G W AA + + D +P+ Sbjct: 62 KLRWFHERGYV-KLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGH-EKPMNVQ- 118 Query: 114 FFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173 ++ + I + D +L D+ G + + L Sbjct: 119 SLGWNIITFKDKTDIHRLEPVKCDTLLCDI-----GEXXXXXVTEGERTVRVLDTVEKWL 173 Query: 174 NIG-GDFLVKTFQG--GTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225 G +F VK + L LL++ F + P SR + EM+ ++ Sbjct: 174 ACGVDNFCVKVLAPYMPDVLEKLELLQRRFGGTVIRNP-LSRNSTHEMYYVSGAR 227 >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* 3evg_A* Length = 305 Score = 134 bits (339), Expect = 2e-32 Identities = 40/227 (17%), Positives = 84/227 (37%), Gaps = 22/227 (9%) Query: 6 GSSSRRGLTQKVKNRSCQGSSRDW----------LNRHINDPYVQRAQLEGW-RARSAYK 54 GS+ L +K K+R ++ ++R + ++R + + +R + K Sbjct: 11 GSNIGETLGEKWKSRLNALGKSEFQIYKKSGIQEVDRTLAKEGIKRGETDHHAVSRGSAK 70 Query: 55 LLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKF 114 L E++ ++ ++VDLG G WS + EPI + Sbjct: 71 LRWFVERN-LVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGP-GHEEPIP-MST 127 Query: 115 FKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLN 174 + ++ + L S + D +L D+ + + ++ RT+ + L+ Sbjct: 128 YGWNLVRLQSGVDVFFIPPERCDTLLCDIG-ESSPNPTVEAGRTLRVLNLVE----NWLS 182 Query: 175 IGGDFLVKTFQGGTTNDI--LCLLKKHFQKVIHVKPVASRAESVEMF 219 F VK ++ I + L++ V+ SR + EM+ Sbjct: 183 NNTQFCVKVLNPYMSSVIEKMEALQRKHGGA-LVRNPLSRNSTHEMY 228 >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme structure, ATP-binding, nucleotide-binding; HET: SAM; 1.70A {Yokose virus} Length = 282 Score = 124 bits (313), Expect = 2e-29 Identities = 40/231 (17%), Positives = 78/231 (33%), Gaps = 26/231 (11%) Query: 6 GSSSRRGLTQKVKNR----------SCQGSSRDWLNRHINDPYVQRAQLEGW-RARSAYK 54 G+ S + K + + S ++R ++ G +R + K Sbjct: 19 GTGSGMTPGEAWKKQLNKLGKTQFEQYKRSCILEVDRTHARDSLENGIQNGIAVSRGSAK 78 Query: 55 LLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI---LDMEPILG 111 L + E+ + + +VDLG G WS AA + +V+A + +PI+ Sbjct: 79 LRWMEERGYV-KPTGIVVDLGCGRGGWSYYAASLKNV----KKVMAFTLGVQGHEKPIMR 133 Query: 112 VKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALE 171 + D +L D+ + ++ RT+ + A + E Sbjct: 134 TTLGWNLI-RFKDKTDVFNMEVIPGDTLLCDIG-ESSPSIAVEEQRTLRVLNCAKQWLQE 191 Query: 172 MLNIGGDFLVKTFQGGTTNDI--LCLLKKHFQKVIHVKPVASRAESVEMFL 220 +F +K T + L L+ + V+ SR + EM+ Sbjct: 192 --GNYTEFCIKVLCPYTPLIMEELSRLQLKHGGGL-VRVPLSRNSTHEMYW 239 >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} Length = 265 Score = 119 bits (300), Expect = 4e-28 Identities = 39/229 (17%), Positives = 83/229 (36%), Gaps = 21/229 (9%) Query: 6 GSSSRRGLTQKVKNRSCQGSSRD----------WLNRHINDPYVQRAQLEGWRA--RSAY 53 S+ L K++ + + +R Y++R + + R Sbjct: 2 PGSTGASLGMMWKDKLNAMTKEEFTRYKRAGVMETDRKEARDYLKRGDGKTGLSVSRGTA 61 Query: 54 KLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVK 113 KL + E+ ++ R+VDLG G WS AA + + P + Sbjct: 62 KLAWMEER-GYVELTGRVVDLGCGRGGWSYYAASRPHVMDVRAYTLGVG-GHEVPRITES 119 Query: 114 FFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173 + ++ + S I D+++ D+ + ++ RT+ + E + + Sbjct: 120 -YGWNIVKFKSRVDIHTLPVERTDVIMCDVG-ESSPKWSVESERTIKILELLEKWK--VK 175 Query: 174 NIGGDFLVKTFQGGTTN--DILCLLKKHFQKVIHVKPVASRAESVEMFL 220 N DF+VK + + L ++++ + V+ SR + EM+ Sbjct: 176 NPSADFVVKVLCPYSVEVMERLSVMQRKWGGG-LVRNPYSRNSTHEMYF 223 >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* Length = 269 Score = 105 bits (263), Expect = 1e-23 Identities = 44/235 (18%), Positives = 83/235 (35%), Gaps = 30/235 (12%) Query: 6 GSSSRRGLTQKVKNRSCQGSSRD----------WLNRHINDPYVQRAQLEG--WRARSAY 53 G + R L ++ K + + ++R + G +R Sbjct: 1 GRAGGRTLGEQWKEKLNAMGKEEFFSYRKEAILEVDRTEARRARREGNKVGGHPVSRGTA 60 Query: 54 KLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI---LDMEPIL 110 KL + E+ + Q ++VDLG G WS AA + V EP+L Sbjct: 61 KLRWLVERRFV-QPIGKVVDLGCGRGGWSYYAATMKNV----QEVRGYTKGGPGHEEPML 115 Query: 111 GVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFAL 170 + + S + D +L D+ + +I+ RT+ + E Sbjct: 116 MQSYGWNIV-TMKSGVDVFYKPSEISDTLLCDIG-ESSPSAEIEEQRTLRILE----MVS 169 Query: 171 EMLNIG-GDFLVKTFQGGTTN--DILCLLKKHFQKVIHVKPVASRAESVEMFLLA 222 + L+ G +F +K + L L++ F + V+ SR + EM+ ++ Sbjct: 170 DWLSRGPKEFCIKILCPYMPKVIEKLESLQRRFGGGL-VRVPLSRNSNHEMYWVS 223 >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} Length = 321 Score = 94.5 bits (234), Expect = 2e-20 Identities = 29/176 (16%), Positives = 65/176 (36%), Gaps = 10/176 (5%) Query: 50 RSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPI 109 R KL + E+ + + +++DLG G W A E Sbjct: 78 RGTAKLRWLVERRFL-EPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGH--EEP 134 Query: 110 LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFA 169 V+ + ++ + + S + D +L D+ + +++ RT+ + E Sbjct: 135 QLVQSYGWNIVTMKSGVDVFYRPSECCDTLLCDIG-ESSSSAEVEEHRTIRVLEMV---E 190 Query: 170 LEMLNIGGDFLVKTFQGGTTN--DILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223 + +F VK + + LL++ + + V+ SR + EM+ +++ Sbjct: 191 DWLHRGPREFCVKVLCPYMPKVIEKMELLQRRYGGGL-VRNPLSRNSTHEMYWVSR 245 >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} Length = 232 Score = 62.3 bits (151), Expect = 8e-11 Identities = 28/197 (14%), Positives = 67/197 (34%), Gaps = 21/197 (10%) Query: 41 RAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVA 100 + + + +R KL + ++ + + + +D+GSS G ++ V + + A + Sbjct: 11 KGEKLRYVSRGGLKLEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQ---NGAKLVYALD 67 Query: 101 IDILDMEPILG-----VKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAY-------PTI 148 + + + V +F+F + +F + G P D+++ P + Sbjct: 68 VGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQ----GRPSFTSIDVSFISLDLILPPL 123 Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK- 207 + +L + E + G T +L + V + Sbjct: 124 YEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGLTF 183 Query: 208 -PVASRAESVEMFLLAK 223 P+ A +VE + Sbjct: 184 SPIKGGAGNVEFLVHLL 200 >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein structure initiative; HET: MSE; 1.53A {Streptococcus thermophilus lmg 18311} Length = 291 Score = 42.2 bits (99), Expect = 1e-04 Identities = 16/120 (13%), Positives = 42/120 (35%), Gaps = 32/120 (26%) Query: 41 RAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV-----AARITGSN--- 92 + + + +R KL + + + +D+G+S G ++ V A + + Sbjct: 59 KGEKLRYVSRGGLKLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGT 118 Query: 93 -------ANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAY 145 + RV +++ +++F + +F G P D+++ Sbjct: 119 NQLVWKLRQDDRVRSME-------------QYNFRYAEPVDFTE----GLPSFASIDVSF 161 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 40.7 bits (95), Expect = 3e-04 Identities = 31/159 (19%), Positives = 43/159 (27%), Gaps = 74/159 (46%) Query: 74 LGSSPGSWSQVAARITGSNANNTR-----VVAIDILDMEPILGVKFFKFDFLDLDSWE-F 127 LG +PG ++ + + G+ T V A+ I DSWE F Sbjct: 256 LGFTPG---ELRSYLKGA----TGHSQGLVTAV------AIAET----------DSWESF 292 Query: 128 IRQA---------IGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALE------- 171 IG V AYP SL + +LE Sbjct: 293 FVSVRKAITVLFFIG-----VRCYEAYP-----------NTSLPPSILEDSLENNEGVPS 336 Query: 172 -MLNIGG---DFLVKTFQGGTTNDILCLLKKHFQKVIHV 206 ML+I + + TN H V Sbjct: 337 PMLSISNLTQEQVQDYVN--KTN-------SHLPAGKQV 366 Score = 25.7 bits (56), Expect = 9.6 Identities = 6/59 (10%), Positives = 19/59 (32%), Gaps = 25/59 (42%) Query: 21 SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRI-VDLGSSP 78 S +++ + ++N + N H L + +++ + L + Sbjct: 340 SISNLTQEQVQDYVN---------------------KTN-SH--LPAGKQVEISLVNGA 374 >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259 Score = 38.0 bits (88), Expect = 0.002 Identities = 25/177 (14%), Positives = 58/177 (32%), Gaps = 25/177 (14%) Query: 68 NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLD------ 121 +I+DL S G + + ++V ++I + + + ++ L+ Sbjct: 50 KGKIIDLCSGNGIIPLLLST-----RTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEII 104 Query: 122 -LDSWEFIRQAIGGNPDLVLSDMAY---PTIGHRKIDHLRTMSLCEAATFF------ALE 171 D + D+V + Y P + + ++ E A Sbjct: 105 EYDLKKITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAAS 164 Query: 172 MLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA-ESVEMFLLAKGFRK 227 +L GG + DI+ +++K+ + ++ V R+ L+ K Sbjct: 165 LLKQGGKANF-VHRPERLLDIIDIMRKYRLEPKRIQFVHPRSDREANTVLVE--GIK 218 >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3hca_A* 3hce_A* 2obf_A* 2onz_A* 2opb_A* 1hnn_A* 1n7i_A* 1n7j_A* Length = 289 Score = 38.0 bits (87), Expect = 0.002 Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 7/81 (8%) Query: 25 SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84 R +L + P G L Q ++ S R ++D+GS P + + Sbjct: 31 EPRAYLRNNYAPPRGDLCNPNGVGPWKLRCLAQTFATGEV--SGRTLIDIGSGPTVYQLL 88 Query: 85 AARITGSNANNTRVVAIDILD 105 +A + D L+ Sbjct: 89 SACSHFE-----DITMTDFLE 104 >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* Length = 241 Score = 32.8 bits (74), Expect = 0.068 Identities = 32/223 (14%), Positives = 64/223 (28%), Gaps = 30/223 (13%) Query: 4 PPGSSSRRGLTQKVKNRSCQGS----------SRDWLNRH-INDPYVQRAQL--EGWRAR 50 P GS ++ +K KN+ G ++ W R+ + + +L EGW + Sbjct: 2 PLGSEVKKKKNKK-KNKKVNGLPPEIAAVPELAKYWAQRYRLFSRFDDGIKLDREGWFSV 60 Query: 51 SAYKLL-QINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPI 109 + K+ I + +VD G + A RV+AIDI Sbjct: 61 TPEKIAEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFAL------TGMRVIAIDI--DPVK 112 Query: 110 LGVKFFKFDFLDLDSWEFIRQA------IGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCE 163 + + + + D+V + + + ++ Sbjct: 113 IALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWGGPDYATAETFDIRTMMS 172 Query: 164 AATFFALE-MLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205 F I + + + + + L Q I Sbjct: 173 PDGFEIFRLSKKITNNIVYFLPRNADIDQVASLAGPGGQVEIE 215 >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 Score = 31.7 bits (71), Expect = 0.13 Identities = 24/183 (13%), Positives = 57/183 (31%), Gaps = 23/183 (12%) Query: 45 EGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL 104 E W + S ++ E++ ++ ++D+G G + +R + V +DI Sbjct: 33 EMWDSGSRSTIIPFFEQY--VKKEAEVLDVGCGDGYGTYKLSR------TGYKAVGVDIS 84 Query: 105 DMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCE 163 ++ G + + L + + +++ I+ L Sbjct: 85 EVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMA-----------INSLEWTEEPL 133 Query: 164 AATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223 A +L G + G T + + K + + E + + Sbjct: 134 RALNEIKRVLKSDGYACIAIL-GPTAKPRENSYPRLYGKDVVCNTM--MPWEFEQLVKEQ 190 Query: 224 GFR 226 GF+ Sbjct: 191 GFK 193 >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 Score = 31.4 bits (70), Expect = 0.17 Identities = 21/168 (12%), Positives = 57/168 (33%), Gaps = 16/168 (9%) Query: 38 YVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTR 97 Y Q E + + + + + + +S +++ G G+ + Sbjct: 16 YDSFVQGEDIQYKEVFAHYEDILEDVVNKSFGNVLEFGVGTGNLTNKLLL------AGRT 69 Query: 98 VVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLR 157 V I+ E + K + +F+ + + D ++S A+ + D + Sbjct: 70 VYGIEP-SREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTIVSTYAFHHLT----DDEK 124 Query: 158 TMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205 +++ + + ++LN GG + + ++ Q+ H Sbjct: 125 NVAIAKYS-----QLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFH 167 >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum dsm 1728} SCOP: c.66.1.13 Length = 275 Score = 30.4 bits (68), Expect = 0.38 Identities = 5/39 (12%), Positives = 13/39 (33%), Gaps = 3/39 (7%) Query: 65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI 103 L+ I+++G G+ S + ++ Sbjct: 108 LRPGMDILEVGVGSGNMSSYILYALNGKG---TLTVVER 143 >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 Length = 660 Score = 30.0 bits (67), Expect = 0.44 Identities = 23/147 (15%), Positives = 42/147 (28%), Gaps = 18/147 (12%) Query: 39 VQRAQLEGWRARSAYKLLQINE----------KHQILQSNRRIVDLGSSP--GSWSQVAA 86 + Q +L Q + R++ LG + G+ + Sbjct: 276 IVTGQAGDGITMQGSQLAQTLGLVQGSRLNSQPACTARRRTRVLILGVNGFIGNH--LTE 333 Query: 87 RITGSNANNTRVVAIDILD--MEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144 R+ ++ V +DI + L F F D+ + D+VL +A Sbjct: 334 RL--LREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVA 391 Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALE 171 T + LR L + Sbjct: 392 IATPIEYTRNPLRVFELDFEENLRIIR 418 >3f0h_A Aminotransferase; RER070207000802, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE LLP; 1.70A {Eubacterium rectale} Length = 376 Score = 30.2 bits (67), Expect = 0.46 Identities = 9/54 (16%), Positives = 13/54 (24%), Gaps = 3/54 (5%) Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT 189 + V + A R + TM E LE +T Sbjct: 31 SEEVRAIGAEQVPYFRTTEFSSTMLENEKFM---LEYAKAPEGSKAVFMTCSST 81 >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} Length = 292 Score = 29.9 bits (66), Expect = 0.53 Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 4/42 (9%) Query: 62 HQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI 103 R ++DLG + G + A G +R+V +DI Sbjct: 41 KPEWFRGRDVLDLGCNVGHLTLSIACKWG----PSRMVGLDI 78 >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltransferase, structural genomics, PSI-2, protein structure initiative; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259 Score = 29.6 bits (65), Expect = 0.55 Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 4/51 (7%) Query: 40 QRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90 Q + E R R A LL L+ DLG PG+ +++ G Sbjct: 10 QYLKFEDERTRPARDLLA----QVPLERVLNGYDLGCGPGNSTELLTDRYG 56 >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, coiled coil, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus dsm 4304} SCOP: c.66.1.3 Length = 210 Score = 29.7 bits (66), Expect = 0.59 Identities = 24/177 (13%), Positives = 56/177 (31%), Gaps = 25/177 (14%) Query: 44 LEGWRARSAY--KL--LQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV 99 +G+R + KL + + L+ + R++ LG++ G+ A I + Sbjct: 30 FDGYREWVPWRSKLAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVD----EGIIY 85 Query: 100 AIDILD---------MEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGH 150 A++ + + FD + I + + DL+ D+A Sbjct: 86 AVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKV----DLIYQDIAQKNQIE 141 Query: 151 RKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207 + + ++ +I + +L ++ F+ V H Sbjct: 142 ILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVF----KSVLKEMEGDFKIVKHGS 194 >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.30A {Bacillus cereus atcc 14579} PDB: 2gh1_A Length = 284 Score = 29.8 bits (66), Expect = 0.60 Identities = 8/39 (20%), Positives = 12/39 (30%), Gaps = 3/39 (7%) Query: 65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI 103 + IVD G G V + + + ID Sbjct: 20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGS---KYTGIDS 55 >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216 Score = 29.5 bits (66), Expect = 0.62 Identities = 21/157 (13%), Positives = 54/157 (34%), Gaps = 22/157 (14%) Query: 28 DWLNRHI--NDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85 L R + +DP+ R + Q+ + +++G + G++++ Sbjct: 15 QSLERELANDDPWRLDD---NPFERERHT--QLLRLSLSSGAVSNGLEIGCAAGAFTEKL 69 Query: 86 ARITGSNANNTRVVAIDI-LDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144 A R+ ID+ + ++ + + + ++ + DL++ Sbjct: 70 APHCK------RLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVVAEV 123 Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV 181 + +L M+ A ++ML GG + Sbjct: 124 --------LYYLEDMTQMRTAIDNMVKMLAPGGHLVF 152 >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 Score = 29.5 bits (65), Expect = 0.73 Identities = 14/141 (9%), Positives = 32/141 (22%), Gaps = 14/141 (9%) Query: 65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124 ++ R++D+G+ G + + + +D + + Sbjct: 19 CRAEHRVLDIGAGAGHTALAFSPYVQ------ECIGVDATK-------EMVEVASSFAQE 65 Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF 184 L S A +L G FL+ Sbjct: 66 KGVENVRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDH 125 Query: 185 QGGTTNDILCLLKKHFQKVIH 205 + +L H ++ Sbjct: 126 -YAPEDPVLDEFVNHLNRLRD 145 >1vl5_A Unknown conserved protein BH2331; 10174951, hypothetical protein, structural genomics, JCSG, protein structure initiative, PSI; HET: MSE; 1.95A {Bacillus halodurans c-125} SCOP: c.66.1.41 Length = 260 Score = 29.2 bits (64), Expect = 0.75 Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 6/39 (15%) Query: 65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI 103 L+ N ++D+ + G + A +VVA D+ Sbjct: 35 LKGNEEVLDVATGGGHVANAFAPFVK------KVVAFDL 67 >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 Score = 29.4 bits (65), Expect = 0.77 Identities = 16/181 (8%), Positives = 35/181 (19%), Gaps = 16/181 (8%) Query: 47 WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM 106 + E+ + +++L S G W++ + RV A+D Sbjct: 26 FVPYMDSAAPAALERLRAGNIRGDVLELASGTGYWTRHLSG------LADRVTALDGSAE 79 Query: 107 EPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAAT 166 + + F + + D Sbjct: 80 MIAEAGRHGLDNVEFRQQDLFDWTPDRQWDAVFFAHWL-----AHVPDDRFEAFWESVR- 133 Query: 167 FFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226 + GG + V V++F Sbjct: 134 ----SAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELT 189 Query: 227 K 227 + Sbjct: 190 E 190 >1or8_A Protein arginine N-methyltransferase 1; protein arginine methylation, adoMet-dependent methylation, transferase; HET: SAH; 2.35A {Rattus norvegicus} SCOP: c.66.1.6 PDB: 1orh_A* 1ori_A* Length = 340 Score = 29.3 bits (65), Expect = 0.80 Identities = 10/47 (21%), Positives = 22/47 (46%), Gaps = 5/47 (10%) Query: 60 EKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM 106 ++ L ++ ++D+GS G AA+ A +V+ I+ + Sbjct: 50 FHNRHLFKDKVVLDVGSGTGILCMFAAK-----AGARKVIGIECSSI 91 >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer, dimer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 Length = 328 Score = 29.0 bits (64), Expect = 0.84 Identities = 9/47 (19%), Positives = 22/47 (46%), Gaps = 5/47 (10%) Query: 60 EKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM 106 +++ L ++ ++D+G G S AA+ V+ +D+ + Sbjct: 31 IQNKDLFKDKIVLDVGCGTGILSMFAAK-----HGAKHVIGVDMSSI 72 >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240 Score = 29.1 bits (64), Expect = 0.87 Identities = 14/93 (15%), Positives = 29/93 (31%), Gaps = 8/93 (8%) Query: 33 HINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSN 92 H +D Y E +R ++ + RR++D+G G + ++ Sbjct: 9 HTSDYY--FLFEEKFRGSRELVKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKE----- 61 Query: 93 ANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW 125 + +DI + F D + Sbjct: 62 -EGIESIGVDINEDMIKFCEGKFNVVKSDAIEY 93 >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 Score = 29.1 bits (64), Expect = 0.88 Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 10/61 (16%) Query: 48 RARSAYKLLQINEKHQILQ-----SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID 102 RS L E H++ + + + ++DLG G AA +V+ ID Sbjct: 20 MPRSKEGLKAAGEWHELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAK-----KVLGID 74 Query: 103 I 103 + Sbjct: 75 L 75 >2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae} Length = 143 Score = 29.1 bits (65), Expect = 0.93 Identities = 11/71 (15%), Positives = 27/71 (38%), Gaps = 8/71 (11%) Query: 123 DSWEFIRQAIGGNPDLVLSDMAYPTI-GHRKIDHLRTMS------LCEAATFFALEMLNI 175 D + ++ D + D+ P++ G ++ + A A+E + Sbjct: 43 DGLDVLKFLQHNKVDAIFLDINIPSLDGVLLAQNISQFAHKPFIVFITAWKEHAVEAFEL 102 Query: 176 GG-DFLVKTFQ 185 D+++K +Q Sbjct: 103 EAFDYILKPYQ 113 >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus HB8} PDB: 2yri_A* Length = 353 Score = 28.5 bits (62), Expect = 1.2 Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 3/54 (5%) Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT 189 P+ V + P GH + LR A + + G LV G + Sbjct: 12 PERVQKALLRPMRGHLDPEVLRVN---RAIQERLAALFDPGEGALVAALAGSGS 62 >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 Score = 28.5 bits (63), Expect = 1.3 Identities = 9/52 (17%), Positives = 23/52 (44%), Gaps = 4/52 (7%) Query: 52 AYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI 103 A L ++ + ++++ G G+ + + A+ N + + +IDI Sbjct: 22 AETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAK----NNPDAEITSIDI 69 >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A Length = 267 Score = 28.0 bits (61), Expect = 1.8 Identities = 13/67 (19%), Positives = 21/67 (31%), Gaps = 5/67 (7%) Query: 31 NRHINDPYVQR-----AQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85 N+ I+D + + +E S L+ L I D+G G + V Sbjct: 5 NKTIHDFELNLICDFFSNMERQGPGSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVL 64 Query: 86 ARITGSN 92 A Sbjct: 65 AGHVTGQ 71 >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxylating); porphyrin metabolism, S-adenosyl-methionine, structural genomics; 1.80A {Geobacter metallireducens gs-15} Length = 204 Score = 28.2 bits (62), Expect = 1.8 Identities = 23/153 (15%), Positives = 47/153 (30%), Gaps = 16/153 (10%) Query: 65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI-LDMEPILGVKFFKFDFLDLD 123 LQ + + D+G+ S S A+ + N R+ A++ + KF ++ Sbjct: 38 LQDDLVMWDIGAGSASVSIEASNLMP----NGRIFALERNPQYLGFIRDNLKKFVARNVT 93 Query: 124 SWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT 183 E G DL D + ++ + L G ++ Sbjct: 94 LVEAFAPE--GLDDLPDPDRVFIGGSGGMLEEIIDA---------VDRRLKSEGVIVLNA 142 Query: 184 FQGGTTNDILCLLKKHFQKVIHVKPVASRAESV 216 T + L+ H V ++ + + Sbjct: 143 VTLDTLTKAVEFLEDHGYMVEVACVNVAKTKGL 175 >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural genomics consortium, SGC; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 Length = 336 Score = 27.8 bits (61), Expect = 2.1 Identities = 20/112 (17%), Positives = 33/112 (29%), Gaps = 23/112 (20%) Query: 65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFK-------- 116 + +++ GS G S ++ GS RV++ ++ L K +K Sbjct: 103 INPGDTVLEAGSGSGGMSLFLSKAVGSQG---RVISFEVRKDHHDLAKKNYKHWRDSWKL 159 Query: 117 ---------FDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTM 159 DF+ D D V DM P H + Sbjct: 160 SHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNP---HVTLPVFYPH 208 >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein, transferase; HET: TNA MTA; 1.66A {Methanothermobacterthermautotrophicus} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* Length = 298 Score = 27.8 bits (61), Expect = 2.3 Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 6/40 (15%) Query: 65 LQSNRRIVDLGSSPGSWS-QVAARITGSNANNTRVVAIDI 103 + R V +G P + + + + G RV ++I Sbjct: 120 FRRGERAVFIGGGPLPLTGILLSHVYG-----MRVNVVEI 154 >3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3gb8_A Length = 1073 Score = 27.6 bits (60), Expect = 2.4 Identities = 23/144 (15%), Positives = 47/144 (32%), Gaps = 11/144 (7%) Query: 63 QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDL 122 Q + + L P +W++V + S NT+ + IL+ +K ++ L Sbjct: 44 QQRMAQEVLTHLKEHPDAWTRVDTILEFSQNMNTKYYGLQILENV----IK-TRWKILPR 98 Query: 123 DSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEA-ATFFALEMLNIGGDFLV 181 + E I++ + G ++ + K L E F+ Sbjct: 99 NQCEGIKKYVVG----LIIKTSSDPTCVEKEKVYIG-KLNMILVQILKQEWPKHWPTFIS 153 Query: 182 KTFQGGTTNDILCLLKKHFQKVIH 205 T++ LC K++ Sbjct: 154 DIVGASRTSESLCQNNMVILKLLS 177 >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243 Score = 27.3 bits (59), Expect = 2.7 Identities = 19/122 (15%), Positives = 44/122 (36%), Gaps = 12/122 (9%) Query: 63 QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDL 122 + ++ +RI D+G G+ + + A + V +D+ + + + + Sbjct: 29 EQVEPGKRIADIGCGTGTATLLLAD-------HYEVTGVDLSEEMLEIAQEKAMETNRHV 81 Query: 123 DSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK 182 D W + + + TI +++L+T + + A +L GG L Sbjct: 82 DFWVQDMRELELPE-----PVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFD 136 Query: 183 TF 184 Sbjct: 137 VH 138 >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, structural genomics, JCSG, PSI, protein structure initiative; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 Length = 393 Score = 27.3 bits (59), Expect = 3.2 Identities = 9/54 (16%), Positives = 14/54 (25%), Gaps = 3/54 (5%) Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT 189 VL M +GH L M ++ + + GT Sbjct: 46 HPSVLQAMNVSPVGHLDPAFLALMDEIQSL---LRYVWQTENPLTIAVSGTGTA 96 >2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A Length = 254 Score = 27.0 bits (59), Expect = 3.3 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 13/91 (14%) Query: 123 DSWEFIRQAIGGNPDLVLSDMAYP-TIGHRKIDHLRTMSL--------CEAATFFALEML 173 D + + + D+VLSD+ P G+R +R + L A L Sbjct: 161 DGVDALNVLSKNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCL 220 Query: 174 NIGG-DFLVKTFQGGTTNDILCLLKKHFQKV 203 G L K T + I L + ++V Sbjct: 221 ESGMDSCLSKPV---TLDVIKQTLTLYAERV 248 >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, joint center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} PDB: 3kgx_A 1h0c_A* 1j04_A* Length = 393 Score = 27.2 bits (59), Expect = 3.5 Identities = 8/54 (14%), Positives = 16/54 (29%), Gaps = 4/54 (7%) Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT 189 VL+ + IGH + + L+ M + + + G Sbjct: 35 APRVLAAGSLRMIGHMQKEMLQIMEEIKQGI---QYVFQTRNPLTL-VVSGSGH 84 >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* Length = 393 Score = 27.0 bits (58), Expect = 3.7 Identities = 10/71 (14%), Positives = 19/71 (26%), Gaps = 4/71 (5%) Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195 P VL M+ P +GH + L+ M + + + Sbjct: 31 PQRVLDAMSRPILGHLHPETLKIM---DDIKEGVRYLFQTNNIATF-CLSASGHGGMEAT 86 Query: 196 LKKHFQKVIHV 206 L + + Sbjct: 87 LCNLLEDGDVI 97 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 26.9 bits (58), Expect = 4.1 Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 7/31 (22%) Query: 83 QVAARITGSNANNTRVVAIDILDMEPILGVK 113 Q ++ S ++ A D D P L +K Sbjct: 20 QALKKLQAS----LKLYA-D--DSAPALAIK 43 >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; 2.79A {Cyanidioschyzon merolae strain 10D} Length = 281 Score = 26.7 bits (58), Expect = 4.3 Identities = 17/90 (18%), Positives = 27/90 (30%), Gaps = 7/90 (7%) Query: 1 MVKPPGSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEG---WRARSAYKLLQ 57 + P R +V+ Q + L + Q L W A L Sbjct: 14 LPGTPPDFYRERQRSRVERY--QSPAGAPLQCSVQVQTTQEHPLWTSHVWSG--ARALAD 69 Query: 58 INEKHQILQSNRRIVDLGSSPGSWSQVAAR 87 L + + + +LG+ G S VA Sbjct: 70 TLCWQPELIAGKTVCELGAGAGLVSIVAFL 99 >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* Length = 379 Score = 26.8 bits (58), Expect = 4.4 Identities = 20/114 (17%), Positives = 37/114 (32%), Gaps = 4/114 (3%) Query: 93 ANNTRVVAIDILDMEPIL-GVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHR 151 V+A D E + + +F +DL E + G + +G Sbjct: 51 HEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAADMGGMGFI 110 Query: 152 KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205 + +H M +F +E I G +K F ++ I K+ + Sbjct: 111 QSNHSVIMYNNTMISFNMIEAARING---IKRFFYASSACIYPEFKQLETTNVS 161 >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} Length = 232 Score = 26.4 bits (58), Expect = 5.2 Identities = 17/103 (16%), Positives = 36/103 (34%), Gaps = 17/103 (16%) Query: 69 RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFF-------KFDFLD 121 ++++++G G + A + +++A D + K++ K Sbjct: 74 KQVLEIGVFRGYSALAMALQLPPDG---QIIACDQDPNATAIAKKYWQKAGVAEKISLRL 130 Query: 122 LDSWEFIRQAIGGNP----DLVLSDMA---YPTIGHRKIDHLR 157 + + Q G P DL+ D YP ++ LR Sbjct: 131 GPALATLEQLTQGKPLPEFDLIFIDADKRNYPRYYEIGLNLLR 173 >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase, structural genomics; 1.90A {Anabaena variabilis atcc 29413} Length = 279 Score = 26.5 bits (57), Expect = 5.3 Identities = 17/112 (15%), Positives = 31/112 (27%), Gaps = 8/112 (7%) Query: 65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124 Q I+DLG G ++ A+ + V+ D + L D Sbjct: 55 PQPGEFILDLGCGTGQLTEKIAQ------SGAEVLGTDNAATMIE--KARQNYPHLHFDV 106 Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIG 176 + + D V S+ + + ++ F E G Sbjct: 107 ADARNFRVDKPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGGKG 158 >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* Length = 225 Score = 26.5 bits (57), Expect = 5.4 Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 4/38 (10%) Query: 66 QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI 103 Q +R +DLG+ G A N NT + ID Sbjct: 23 QFDRVHIDLGTGDGRNIYKLAI----NDQNTFYIGIDP 56 >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* Length = 276 Score = 26.2 bits (57), Expect = 5.5 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%) Query: 49 ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86 +R KL I+E+ + + +VDLG GSWS AA Sbjct: 65 SRGTAKLAWIDERGGV-ELKGTVVDLGCGRGSWSYYAA 101 >1e4c_P L-fuculose 1-phosphate aldolase; aldolase (class II), bacterial L-fucose metabolism; 1.66A {Escherichia coli} SCOP: c.74.1.1 PDB: 1fua_A 2fua_A 3fua_A 4fua_A* 1dzv_P 1e4b_P 1e47_P* 1e48_P* 1dzz_P 1e46_P 1dzu_P 1dzy_P 1dzx_P 1dzw_P 1e49_P 1e4a_P Length = 215 Score = 26.4 bits (58), Expect = 5.6 Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 10/63 (15%) Query: 61 KHQILQSNRRIVDLGSSPGSWSQVAAR------ITGSNANNTRVVAIDI----LDMEPIL 110 QI+ + + LG + G+ V+ R IT + ++ I + + Sbjct: 7 ARQIIDTCLEMTRLGLNQGTAGNVSVRYQDGMLITPTGIPYEKLTESHIVFIDGNGKHEE 66 Query: 111 GVK 113 G Sbjct: 67 GKL 69 >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299 Score = 26.2 bits (56), Expect = 6.9 Identities = 14/115 (12%), Positives = 29/115 (25%), Gaps = 8/115 (6%) Query: 70 RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIR 129 +++L + G + V A+++ +L + D + Sbjct: 85 PVLELAAGMGRLTFPFLD------LGWEVTALEL--STSVLAAFRKRLAEAPADVRDRCT 136 Query: 130 QAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF 184 G L + + + E L GG FL+ Sbjct: 137 LVQGDMSAFALDKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLA 191 >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352 Score = 26.1 bits (57), Expect = 7.7 Identities = 15/117 (12%), Positives = 26/117 (22%), Gaps = 8/117 (6%) Query: 65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124 R ++DL G++ R D+ D Sbjct: 177 FARARTVIDLAGGHGTYLAQVLR----RHPQLTGQIWDLPTTRDAARKTIHAHDLGGR-- 230 Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV 181 EF + + A + H A ++ GG L+ Sbjct: 231 VEFFEKNL--LDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLI 285 >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286 Score = 25.9 bits (56), Expect = 7.7 Identities = 7/34 (20%), Positives = 12/34 (35%), Gaps = 6/34 (17%) Query: 70 RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI 103 +++DLG G S + V + D Sbjct: 123 KVLDLGCGQGRNSLYLSL------LGYDVTSWDH 150 >3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A* Length = 259 Score = 25.8 bits (56), Expect = 8.2 Identities = 7/28 (25%), Positives = 10/28 (35%) Query: 123 DSWEFIRQAIGGNPDLVLSDMAYPTIGH 150 D+ E R G + L D+ P Sbjct: 36 DTLEGARHCQGDEYVVALVDLTLPDAPS 63 >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 1f3l_A* Length = 340 Score = 25.6 bits (55), Expect = 9.1 Identities = 13/73 (17%), Positives = 28/73 (38%), Gaps = 7/73 (9%) Query: 60 EKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDF 119 ++ + ++ ++D+G G S AA+ A +V+ +D E + Sbjct: 57 YQNPHIFKDKVVLDVGCGTGILSMFAAK-----AGAKKVLGVDQ--SEILYQAMDIIRLN 109 Query: 120 LDLDSWEFIRQAI 132 D+ I+ I Sbjct: 110 KLEDTITLIKGKI 122 >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} Length = 416 Score = 25.6 bits (55), Expect = 9.2 Identities = 8/54 (14%), Positives = 14/54 (25%), Gaps = 4/54 (7%) Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT 189 VL M+ P +G M+ E+ + G + Sbjct: 23 DPRVLRVMSTPVVGQFDPAFTGIMNETMEML---RELFQTKNRWAY-PIDGTSR 72 >1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1 Length = 136 Score = 25.7 bits (56), Expect = 9.9 Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 10/73 (13%) Query: 123 DSWEFIRQAIGGNPDLVLSDMAYPTI-GHRKIDHLRTMSLCE--------AATFFALEML 173 D E +++A PDL++ D+ P + G LR L F + L Sbjct: 35 DGEEALKKAETEKPDLIVLDVMLPKLDGIEVCKQLRQQKLMFPILMLTAKDEEFDKVLGL 94 Query: 174 NIGG-DFLVKTFQ 185 +G D++ K F Sbjct: 95 ELGADDYMTKPFS 107 >3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis} Length = 152 Score = 25.6 bits (56), Expect = 10.0 Identities = 14/72 (19%), Positives = 21/72 (29%), Gaps = 10/72 (13%) Query: 123 DSWEFIRQAIGGNPDLVLSDMAYP-TIGHRKIDHLRTMSL--------CEAATFFALEML 173 D + PD+ L D P G + +R+ L + L Sbjct: 49 DGAAALELIKAHLPDVALLDYRMPGMDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQAL 108 Query: 174 NIGG-DFLVKTF 184 G FL+K Sbjct: 109 QQGAAGFLLKDS 120 >3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP} Length = 153 Score = 25.7 bits (56), Expect = 10.0 Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 10/73 (13%) Query: 123 DSWEFIRQAIGGNPDLVLSDMAYPTI-GHRKIDHLRT--------MSLCEAATFFALEML 173 D+ E R PD+V+ D+ P G H+R + + FAL+ Sbjct: 39 DAGEAYRLYRETTPDIVVMDLTLPGPGGIEATRHIRQWDGAARILIFTMHQGSAFALKAF 98 Query: 174 NIGG-DFLVKTFQ 185 G ++ K+ Sbjct: 99 EAGASGYVTKSSD 111 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.322 0.137 0.410 Gapped Lambda K H 0.267 0.0443 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,995,716 Number of extensions: 90226 Number of successful extensions: 404 Number of sequences better than 10.0: 1 Number of HSP's gapped: 370 Number of HSP's successfully gapped: 81 Length of query: 227 Length of database: 5,693,230 Length adjustment: 89 Effective length of query: 138 Effective length of database: 3,535,514 Effective search space: 487900932 Effective search space used: 487900932 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 55 (25.7 bits)