BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780313|ref|YP_003064726.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Candidatus Liberibacter asiaticus str. psy62] (227 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780313|ref|YP_003064726.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Candidatus Liberibacter asiaticus str. psy62] Length = 227 Score = 472 bits (1215), Expect = e-135, Method: Compositional matrix adjust. Identities = 227/227 (100%), Positives = 227/227 (100%) Query: 1 MVKPPGSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINE 60 MVKPPGSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINE Sbjct: 1 MVKPPGSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINE 60 Query: 61 KHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFL 120 KHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFL Sbjct: 61 KHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFL 120 Query: 121 DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL 180 DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL Sbjct: 121 DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL 180 Query: 181 VKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227 VKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK Sbjct: 181 VKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227 >gi|254780947|ref|YP_003065360.1| transcription-repair coupling factor [Candidatus Liberibacter asiaticus str. psy62] Length = 1187 Score = 23.9 bits (50), Expect = 2.4, Method: Compositional matrix adjust. Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 50 RSAYKLLQINEKHQILQSNRRIVDLGSSPG-SWSQVAARITGSNAN 94 ++ +KL+Q+ +Q ++ R+V L + PG SW A + S N Sbjct: 342 QTTHKLVQMTAFNQQETAHNRVVHLNAFPGKSWVPSAVQKIESQDN 387 >537021.9.peg.363_1 Length = 79 Score = 23.5 bits (49), Expect = 3.7, Method: Compositional matrix adjust. Identities = 13/35 (37%), Positives = 18/35 (51%) Query: 9 SRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQ 43 S R K+ +R SSRD L + IN P Q+ + Sbjct: 35 SARSFLVKLSSRRVAKSSRDGLVKDINTPDKQQTK 69 >gi|254780746|ref|YP_003065159.1| hypothetical protein CLIBASIA_03165 [Candidatus Liberibacter asiaticus str. psy62] Length = 215 Score = 23.1 bits (48), Expect = 4.3, Method: Compositional matrix adjust. Identities = 9/20 (45%), Positives = 14/20 (70%) Query: 100 AIDILDMEPILGVKFFKFDF 119 +ID+LD EP++ KF D+ Sbjct: 57 SIDLLDFEPMIMKKFILSDY 76 >gi|254781178|ref|YP_003065591.1| cell division protein [Candidatus Liberibacter asiaticus str. psy62] Length = 304 Score = 22.3 bits (46), Expect = 6.3, Method: Compositional matrix adjust. Identities = 17/67 (25%), Positives = 36/67 (53%), Gaps = 3/67 (4%) Query: 8 SSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQS 67 S+ G+T+ VK + R W + H+++ + + E + A K+L++ K+QIL Sbjct: 208 SNIAGITKFVKAYNWIAERR-W-DLHLHNGIIIKLPEEKFDVAIA-KILELQNKYQILDR 264 Query: 68 NRRIVDL 74 + ++D+ Sbjct: 265 DISVIDM 271 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.322 0.137 0.410 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 144,208 Number of Sequences: 1233 Number of extensions: 5519 Number of successful extensions: 10 Number of sequences better than 100.0: 6 Number of HSP's better than 100.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 5 Number of HSP's gapped (non-prelim): 6 length of query: 227 length of database: 328,796 effective HSP length: 71 effective length of query: 156 effective length of database: 241,253 effective search space: 37635468 effective search space used: 37635468 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 37 (18.9 bits)