Query gi|254780314|ref|YP_003064727.1| outer membrane protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 351
No_of_seqs 25 out of 27
Neff 1.8
Searched_HMMs 33803
Date Wed Jun 1 12:03:21 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780314.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3prn_A Porin; integral membra 97.6 0.0052 1.6E-07 38.2 17.9 156 179-351 132-289 (289)
2 >2wjr_A Probable N-acetylneura 96.6 0.053 1.6E-06 31.9 12.8 99 222-324 2-105 (214)
3 >2por_A Porin; HET: C8E; 1.80A 95.3 0.21 6.3E-06 28.2 18.5 157 180-351 119-301 (301)
4 >1pho_A Phosphoporin; outer me 94.0 0.43 1.3E-05 26.3 17.5 256 75-351 29-330 (330)
5 >2f1c_X OMPG, outer membrane p 92.5 0.32 9.5E-06 27.1 5.5 66 268-333 193-263 (286)
6 >2hdi_A Colicin I receptor; ou 90.3 1.3 3.7E-05 23.4 9.0 60 268-327 412-477 (504)
7 >2zfg_A Outer membrane protein 87.2 2 6E-05 22.1 20.5 241 97-351 53-340 (340)
8 >1p4t_A Outer membrane protein 85.3 2.5 7.5E-05 21.5 10.3 117 187-329 4-133 (155)
9 >1orm_A Outer membrane protein 82.6 0.25 7.4E-06 27.8 -0.3 70 260-329 53-132 (148)
10 >2odj_A Porin D; outer membran 70.8 7.1 0.00021 18.7 12.3 59 269-327 315-395 (428)
11 >2f1v_A Outer membrane protein 65.0 9.3 0.00028 18.0 11.8 31 300-330 130-160 (197)
12 >2k0l_A Outer membrane protein 59.8 12 0.00034 17.4 9.2 69 262-330 86-169 (216)
13 >2qtk_A Probable porin; outer 53.1 15 0.00044 16.7 16.3 128 201-329 203-371 (390)
14 >2j1n_A Outer membrane protein 45.8 19 0.00057 16.0 15.8 217 134-351 71-346 (346)
15 >3iag_C Recombining binding pr 45.6 17 0.0005 16.4 2.7 30 160-191 8-38 (160)
16 >1gax_A Valrs, valyl-tRNA synt 42.3 9.2 0.00027 18.0 0.9 39 46-84 44-82 (385)
17 >3jty_A BENF-like porin; PFL_1 37.2 26 0.00078 15.2 16.2 147 180-329 186-373 (402)
18 >1pcx_A Protein transport prot 29.6 35 0.001 14.4 6.6 64 267-330 125-204 (230)
19 >3dwo_X Probable outer membran 27.9 37 0.0011 14.2 7.4 63 267-329 334-404 (451)
20 >2qom_A Serine protease ESPP; 27.6 38 0.0011 14.2 7.8 58 270-327 200-258 (285)
21 >2q03_A Uncharacterized protei 25.9 41 0.0012 14.0 6.6 98 150-260 15-119 (138)
22 >2fgq_X OMP32, outer membrane 23.2 46 0.0014 13.7 16.4 223 84-329 39-297 (332)
23 >2vgd_A Enxyn11A; glycoside hy 22.7 29 0.00087 14.9 0.8 72 142-231 30-106 (218)
24 >1xnk_A Endoxylanase 11A; glyc 22.4 29 0.00086 14.9 0.7 71 144-231 8-83 (196)
25 >1ile_A Ilers, isoleucyl-tRNA 22.0 36 0.0011 14.3 1.1 30 47-76 49-78 (305)
No 1
>>3prn_A Porin; integral membrane protein, pore eyelet mutant; HET: C8E; 1.90A {Rhodopseudomonas blastica} (A:)
Probab=97.62 E-value=0.0052 Score=38.23 Aligned_cols=156 Identities=14% Similarity=0.082 Sum_probs=111.8
Q ss_pred EEEEEEECCCEEEEEEHHHCCCCC--CCCEEEEEEEEEEEECCEEEEEEEEEECCCCCCEEEEEEEECCCCCCEEEEEEE
Q ss_conf 268998257545103303214666--654034788963454126899985221146651279888613678820246788
Q gi|254780314|r 179 SLSYRHSFGLLKAGLSTDLLQKDG--LKQVLGIGYMASYAIGKIRSTVTGGYDAGTNNVAIRANISSPVSRAGTLDCGAV 256 (351)
Q Consensus 179 SirYqYe~G~F~AGiSvDeLE~dg--~~n~VGV~g~vsg~aGavS~qltGGyDtd~eeGAIRAl~ta~iG~PGTlglAgV 256 (351)
-+.|.++.+.|+.+.+...-+.+. ..+.-+....+.++.+.+.....-.......+.+-.-.+.+... .+-+-+++.
T Consensus 132 ~~~~s~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~y~~~~~~~~~~~~~~~~a~y~-~~~~~l~a~ 210 (289)
T 3prn_A 132 GIAVTYSISGVNLYLSYVDPDQTVDSSLVTEEFGIAADWSNDMISLAAAYTTDAGGIVDNDIAFVGAAYK-FNDAGTVGL 210 (289)
T ss_dssp EEEEEEECSSEEEEEEEEETTTTSCGGGSCCEEEEEEEEECSSEEEEEEEEESGGGCTTCCEEEEEEEEC-CSSSEEEEE
T ss_pred EEEECCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCEEEEEEEEECCCCCCCCCCCEEEEEEE-ECCEEEEEE
T ss_conf 7997710068999998832677654555673589999902786468988864035655543210001454-054268889
Q ss_pred EECCCCCCCCCCCEEEEEEEEEEECEEEEECCCEEEECCCCCCCCCEEEEEEEEEEEEECCCEEEEEEEECCCCCCCCCC
Q ss_conf 73386400011211366435563110478604525404567678522778778888851591277898732742113542
Q gi|254780314|r 257 WASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQYFGDINKTGKDGWSAGISAKYMISSGLEAQASVAFNDNFVKKGVA 336 (351)
Q Consensus 257 wASgpNaYY~~SEWaVAAeYaikaTDKl~ITPG~QY~gd~~~sg~DaWk~GlTvDYqItegL~tK~SVqY~D~~~~~~~~ 336 (351)
|.-..+.-.+...|.+.+.|.+.. +++.-+.++..+ ....++|. +.++|++..++..-+.++|.|.
T Consensus 211 y~~~~~~~~~~~~~~~~~~Y~~~~---~~~~~~y~~~~~--~~~~~~~~--~g~~Y~l~k~~~~yae~~~~~~------- 276 (289)
T 3prn_A 211 NWYDNGLSTAGDQVTLYGNYAFGA---TTVRAYVSDIDR--AGADTAYG--IGADYQFAEGVKVSGSVQSGFA------- 276 (289)
T ss_dssp EEEECTTSTTCSEEEEEEEEEETT---EEEEEEEEEECS--TTCCCEEE--EEEEEEEETTEEEEEEEEECTT-------
T ss_pred EEEECCCCCCCEEEEEEEEEEECC---EEEEEEEEECCC--CCCCCEEE--EEEEEECCCCEEEEEEEEEEEC-------
T ss_conf 998503776304899999999488---889999961577--77641899--9999984898599999999708-------
Q ss_pred CCCCCCCCCCHHCCC
Q ss_conf 346631001101139
Q gi|254780314|r 337 IDKGVDLSVGLKKSF 351 (351)
Q Consensus 337 ~d~g~d~t~gl~~sf 351 (351)
+++..++||.-.|
T Consensus 277 --~~~~~~vG~r~~F 289 (289)
T 3prn_A 277 --NETVADVGVRFDF 289 (289)
T ss_dssp --CCEEEEEEEEEEC
T ss_pred --CCCEEEEEEEEEC
T ss_conf --9825705757769
No 2
>>2wjr_A Probable N-acetylneuraminic acid outer membrane channel protein NANC; cell membrane, ION transport, transmembrane, porin, transport; HET: EPE; 1.80A {Escherichia coli} PDB: 2wjq_A* (A:)
Probab=96.60 E-value=0.053 Score=31.95 Aligned_cols=99 Identities=13% Similarity=0.117 Sum_probs=62.1
Q ss_pred EEEEEEEECCCCCCEEEEEEEECCCCCC-EEEEEEEEEC-CCC---CCCCCCCEEEEEEEEEEECEEEEECCCEEEECCC
Q ss_conf 9998522114665127988861367882-0246788733-864---0001121136643556311047860452540456
Q gi|254780314|r 222 STVTGGYDAGTNNVAIRANISSPVSRAG-TLDCGAVWAS-GDN---SYYDKSKYSVFAGYKFDVAKSITISGGGQYFGDI 296 (351)
Q Consensus 222 ~qltGGyDtd~eeGAIRAl~ta~iG~PG-TlglAgVwAS-gpN---aYY~~SEWaVAAeYaikaTDKl~ITPG~QY~gd~ 296 (351)
.++-..|-.+.+--+-|..++-... -| -|.+-+-|.. ..+ .=.......+-++|.+|++|+|.|+||.+.-..
T Consensus 2 id~Rhey~~~s~~h~dRi~~~h~f~-nG~g~s~E~~~~~~~~~~~~~~~~~ng~E~~~~y~~kl~d~~~l~PG~~~~~~- 79 (214)
T 2wjr_A 2 LDVRGGYRSGSHAYETRLKVSEGWQ-NGWWASMESNTWNTIHDNKKENAALNDVQVEVNYAIKLDDQWTVRPGMLTHFS- 79 (214)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEECT-TSEEEEEEEEEEEEC----------CEEEEEEEECEESSSSEEEEEEEEEEEE-
T ss_pred CEEECCCCCCCCCCCEEEEEEEECC-CCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEECCEEEEEC-
T ss_conf 1652000147654416899998847-86389999811677767655545344369999999863888699345399966-
Q ss_pred CCCCCCEEEEEEEEEEEEECCCEEEEEE
Q ss_conf 7678522778778888851591277898
Q gi|254780314|r 297 NKTGKDGWSAGISAKYMISSGLEAQASV 324 (351)
Q Consensus 297 ~~sg~DaWk~GlTvDYqItegL~tK~SV 324 (351)
+.+-+.|..|.+-|++.++|+..+--
T Consensus 80 --~~~~~ykPylk~~Y~f~~~~~~~~RY 105 (214)
T 2wjr_A 80 --SNGTRYGPYVKLSWDATKDLNFGIRY 105 (214)
T ss_dssp --TTEEEEEEEEEEEEEEETTEEEEEEE
T ss_pred --CCCCEEEEEEEEEEEECCCEEEEEEE
T ss_conf --99857802799969976985799883
No 3
>>2por_A Porin; HET: C8E; 1.80A {Rhodobacter capsulatus} (A:)
Probab=95.28 E-value=0.21 Score=28.23 Aligned_cols=157 Identities=18% Similarity=0.162 Sum_probs=100.3
Q ss_pred EEEEEECCCEEEEEEHHHCCCCCCC--CEEEEEEEEEEEECCEEEEEEEEEECCCC------CCEEEEEEEECCCCCCEE
Q ss_conf 6899825754510330321466665--40347889634541268999852211466------512798886136788202
Q gi|254780314|r 180 LSYRHSFGLLKAGLSTDLLQKDGLK--QVLGIGYMASYAIGKIRSTVTGGYDAGTN------NVAIRANISSPVSRAGTL 251 (351)
Q Consensus 180 irYqYe~G~F~AGiSvDeLE~dg~~--n~VGV~g~vsg~aGavS~qltGGyDtd~e------eGAIRAl~ta~iG~PGTl 251 (351)
+-|..+++.|+.+++.-.-++++.. +.-+.+..+.+..+++.......+..... .-+.+....-.++ -+
T Consensus 119 ~~~s~~~~g~~~~a~y~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~---~~ 195 (301)
T 2por_A 119 LLYTYSAGAFSVAASMSDGKVGETSEDDAQEMAVAAAYTFGNYTVGLGYEKIDSPDTALMADMEQLELAAIAKFG---AT 195 (301)
T ss_dssp EEEEEEETTEEEEEEECCSBSTTSSCBCCEEEEEEEEEEETTEEEEEEEEEEECSCTTTSCCEEEEEEEEEEEET---TE
T ss_pred EEECCCCCCEEEEEEEEEECCCCCCCCCCCCEEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEEECC---CE
T ss_conf 996243376589999987216786431132104656761576202442131111101245665226788887114---28
Q ss_pred EEEEEEECCC------------------CCCCCCCCEEEEEEEEEEECEEEEECCCEEEECCCCCCCCCEEEEEEEEEEE
Q ss_conf 4678873386------------------4000112113664355631104786045254045676785227787788888
Q gi|254780314|r 252 DCGAVWASGD------------------NSYYDKSKYSVFAGYKFDVAKSITISGGGQYFGDINKTGKDGWSAGISAKYM 313 (351)
Q Consensus 252 glAgVwASgp------------------NaYY~~SEWaVAAeYaikaTDKl~ITPG~QY~gd~~~sg~DaWk~GlTvDYq 313 (351)
.+++.|.... ..+.....|.+-+.|.+.... +...|...-+....+.+...+.++|+
T Consensus 196 ~l~a~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~Y~ 270 (301)
T 2por_A 196 NVKAYYADGELDRDFARAVFDLTPVAAAATAVDHKAYGLSVDSTFGATT-----VGGYVQVLDIDTIDDVTYYGLGASYD 270 (301)
T ss_dssp EEEEEEEEEEEEHHHHHHHTTCCCCSSCCCEEEEEEEEEEEEEEETTEE-----EEEEEEEEEETTTEEEEEEEEEEEEE
T ss_pred EEEEEEEEEEECCCCCCCEEEEEECCCCCCCCCEEEEEEEEEEECCCEE-----EEEEEEEECCCCCCCEEEEEEEEEEE
T ss_conf 9999999863123322210001101355565201457888999816568-----99999985268888626999999998
Q ss_pred EECCCEEEEEEEECCCCCCCCCCCCCCCCCCCCHHCCC
Q ss_conf 51591277898732742113542346631001101139
Q gi|254780314|r 314 ISSGLEAQASVAFNDNFVKKGVAIDKGVDLSVGLKKSF 351 (351)
Q Consensus 314 ItegL~tK~SVqY~D~~~~~~~~~d~g~d~t~gl~~sf 351 (351)
+...+..-+..+|.+. -++.+...+|++--|
T Consensus 271 lsk~~~~y~~~~~~~~-------~~~~~~~~vG~r~~F 301 (301)
T 2por_A 271 LGGGASIVGGIADNDL-------PNSDMVADLGVKFKF 301 (301)
T ss_dssp EETTEEEEEEEEEECS-------SSCCCEEEEEEEEEC
T ss_pred CCCCEEEEEEEEEEEC-------CCCCEEEEEEEEEEC
T ss_conf 8999799999999966-------899737999869989
No 4
>>1pho_A Phosphoporin; outer membrane protein; 3.00A {Escherichia coli} (A:)
Probab=94.03 E-value=0.43 Score=26.33 Aligned_cols=256 Identities=12% Similarity=0.079 Sum_probs=125.7
Q ss_pred CCCCCCCCCCEEEEEEEEEECCCCEEEEEEEEEECCCHHCCCCCCCCHHEEEEECCCCCCCHHHHEEEH-----HHEEEC
Q ss_conf 765543334200014899705686134999997422000000111210001210355551125200011-----000001
Q gi|254780314|r 75 NEFNSLAYDIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVRALAFTVPSSKLSVEELSLSM-----KGARLG 149 (351)
Q Consensus 75 ~e~n~~~~d~~~~g~~~~~a~~g~~tgv~~~~~~~d~~~~~~~~~~d~~a~~~~~~Ss~l~ldeayLdi-----~GfRaG 149 (351)
.+.++..=.+..||..+. ...++.+.++.+.++-.-... .+..+..+++|+-+ +-+|.|
T Consensus 29 ~~~~~~~SR~G~~g~~~l---~~gl~~~~~~E~~~~~~~~~~-------------~~~~~~~R~ayvGl~~~~~G~l~~G 92 (330)
T 1pho_A 29 KDGDQSYIRFGFKGETQI---NDQLTGYGRWEAEFAGNKAES-------------DTAQQKTRLAFAGLKYKDLGSFDYG 92 (330)
T ss_dssp CCEECCEEEEEEEEEECC---SSSEEEEEEEEEEEESSSCTT-------------CCCCEEEEEEEEEEEETTTEEEEEE
T ss_pred CCCCCCEEEEEEEEEEEC---CCCEEEEEEEEEEEECCCCCC-------------CCCCCCEEEEEEEEECCCCEEEEEE
T ss_conf 536431159999999988---998499999998798789876-------------6777410048999834886799950
Q ss_pred CEEEECCC----CCCCCCCEE----EECCCCCCCCCCEEEEEE-ECCCEEEEEEHHHCCC--C---CCCCEEEEEEEEEE
Q ss_conf 22200244----445555102----311222444332268998-2575451033032146--6---66540347889634
Q gi|254780314|r 150 YYKSWSDE----VNPVYSPTT----LYNDARGLDKMMSLSYRH-SFGLLKAGLSTDLLQK--D---GLKQVLGIGYMASY 215 (351)
Q Consensus 150 ~FySWWDE----tddIgS~~T----L~Nd~rg~dk~~SirYqY-e~G~F~AGiSvDeLE~--d---g~~n~VGV~g~vsg 215 (351)
..++.+++ +|++..... ...-......-++|+|.. +.+.|..+++.-.-.+ . ......+.....+.
T Consensus 93 r~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~y~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (330)
T 1pho_A 93 RNLGALYDVEAWTDMFPEFGGDSSAQTDNFMTKRASGLATYRNTDFFGVIDGLNLTLQYQGKNENRDVKKQNGDGFGTSL 172 (330)
T ss_dssp EEECSTHHHHTTTCCSSSCCSCSSCCTTSTTTSEEEEEEEEEEESTTTTCTTEEEEEEEECCBCSSCSTTCBCSEEEEEE
T ss_pred EECCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCEEEE
T ss_conf 10560124200133444345554333342234542644897044114613679999987026777664444575300122
Q ss_pred EECCEEEEEEEEE----------------ECCCCCCEEEEEEEECCCCCCEEEEEEEEECCCCC-------CCCCCCEEE
Q ss_conf 5412689998522----------------11466512798886136788202467887338640-------001121136
Q gi|254780314|r 216 AIGKIRSTVTGGY----------------DAGTNNVAIRANISSPVSRAGTLDCGAVWASGDNS-------YYDKSKYSV 272 (351)
Q Consensus 216 ~aGavS~qltGGy----------------Dtd~eeGAIRAl~ta~iG~PGTlglAgVwASgpNa-------YY~~SEWaV 272 (351)
..+...+.+.+.+ ..+...-+.++.+.-+.+ | |-+++.|....+. ......|.+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~-~--~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
T 1pho_A 173 TYDFGGSDFAISGAYTNSDRTNEQNLQSRGTGKRAEAWATGLKYDAN-N--IYLATFYSETRKMTPITGGFANKTQNFEA 249 (330)
T ss_dssp EEEETTTTEEEEEEEEEEECCGGGTTSSSSCSSEEEEEEEEEEEEET-T--EEEEEEEEEEESCSCCSSSSCSEEEEEEE
T ss_pred EEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEECC-C--EEEEEEEEEEEECCCCCCCCCCCEEEEEE
T ss_conf 67702676124566761256543333334554203589999999715-1--78887887775056655554442478999
Q ss_pred EEEEEEEECEEEEECCCEEEECCCC----CCCCCEEEEEEEEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 6435563110478604525404567----678522778778888851591277898732742113542346631001101
Q gi|254780314|r 273 FAGYKFDVAKSITISGGGQYFGDIN----KTGKDGWSAGISAKYMISSGLEAQASVAFNDNFVKKGVAIDKGVDLSVGLK 348 (351)
Q Consensus 273 AAeYaikaTDKl~ITPG~QY~gd~~----~sg~DaWk~GlTvDYqItegL~tK~SVqY~D~~~~~~~~~d~g~d~t~gl~ 348 (351)
.|.|.+ +.++.+..+.++..+-+ ..+.+.+...+-++|++..++..-+.++|.+.--...-..++..-..+|+.
T Consensus 250 ~a~y~~--~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~g~~Y~~sk~~~~ya~~~~~~~~~~~~~~~~~~~~~~vG~r 327 (330)
T 1pho_A 250 VAQYQF--DFGLRPSLGYVLSKGKDIEGIGDEDLVNYIDVGATYYFNKNMSAFVDYKINQLDSDNKLNINNDDIVAVGMT 327 (330)
T ss_dssp EEEECC--SSSEEEEEEEEEEEEESBTTTBCCEEEEEEEEEEEEESSSSEEEEEEEEEECCCSSCTTCCCCCCEEEEEEE
T ss_pred EEEEEE--CCCEEEEEEEEEEECCCCCCCCCCCCEEEEEEEEEEEECCCEEEEEEEEEEECCCCCCCCCCCCCEEEEEEE
T ss_conf 999995--455178999999971345677887615999999999907998999999998224776677666889999999
Q ss_pred CCC
Q ss_conf 139
Q gi|254780314|r 349 KSF 351 (351)
Q Consensus 349 ~sf 351 (351)
-.|
T Consensus 328 ~~F 330 (330)
T 1pho_A 328 YQF 330 (330)
T ss_dssp EEC
T ss_pred EEC
T ss_conf 989
No 5
>>2f1c_X OMPG, outer membrane protein G; beta barrel; HET: C8E; 2.30A {Escherichia coli K12} PDB: 2jqy_A 2iwv_A* 2iww_A* (X:)
Probab=92.47 E-value=0.32 Score=27.08 Aligned_cols=66 Identities=18% Similarity=0.137 Sum_probs=47.2
Q ss_pred CCEEEEEEEEEEECEEEEECCCEEEEC-----CCCCCCCCEEEEEEEEEEEEECCCEEEEEEEECCCCCCC
Q ss_conf 211366435563110478604525404-----567678522778778888851591277898732742113
Q gi|254780314|r 268 SKYSVFAGYKFDVAKSITISGGGQYFG-----DINKTGKDGWSAGISAKYMISSGLEAQASVAFNDNFVKK 333 (351)
Q Consensus 268 SEWaVAAeYaikaTDKl~ITPG~QY~g-----d~~~sg~DaWk~GlTvDYqItegL~tK~SVqY~D~~~~~ 333 (351)
.++...++..+...+++.+.-.+++.. .++..-+|.|+.++-+.|++++.|.-++.++|.+..++.
T Consensus 193 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~d~~~~~~G~ey~~~~~~~lr~gy~y~~~~~~~ 263 (286)
T 2f1c_X 193 IRAYLPLTLGNHSVTPYTRIGLDRWSNWDWQDDIEREGHDFNRVGLFYGYDFQNGLSVSLEYAFEWQDHDE 263 (286)
T ss_dssp EEEECCEEETTEEEEEEEEEEEEEECC------------CCEEEEEEEEEECSSSEEEEEEEEEEECC---
T ss_pred EEEEEEEEECCEEEEEEEEEEEEEECCCCCCCCCEECCCCCEEEEEEEEEEECCCEEEEEEEEEEECCCCC
T ss_conf 99888885088488557998864100246567761405772499999963407966999999999725547
No 6
>>2hdi_A Colicin I receptor; outer membrane, iron transport, TONB BOX, signal transduction, colicin I receptor, receptor ligand, membrane protein; HET: LDA; 2.50A {Escherichia coli} PDB: 2hdf_A* (A:136-639)
Probab=90.25 E-value=1.3 Score=23.40 Aligned_cols=60 Identities=12% Similarity=0.040 Sum_probs=43.1
Q ss_pred CCEEEEEEEEEEECEEEEECCCEEEECCCCCCC------CCEEEEEEEEEEEEECCCEEEEEEEEC
Q ss_conf 211366435563110478604525404567678------522778778888851591277898732
Q gi|254780314|r 268 SKYSVFAGYKFDVAKSITISGGGQYFGDINKTG------KDGWSAGISAKYMISSGLEAQASVAFN 327 (351)
Q Consensus 268 SEWaVAAeYaikaTDKl~ITPG~QY~gd~~~sg------~DaWk~GlTvDYqItegL~tK~SVqY~ 327 (351)
..+.+...|.+....++.+....+|.+...... ..-+..-+.+-|++.+++...+.|+=+
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~d~~~~y~~~~~~~l~l~v~NL 477 (504)
T 2hdi_A 412 HTANGTLDWKPLALEDWSMYMSGHYTGQKRADSATAKTPGGYTIWNTGAAWQVTKDVKLRAGVLNL 477 (504)
T ss_dssp EEEEEEEEECCSSCTTEEEEEEEEEECCC----------CCEEEEEEEEEEEEETTEEEEEEEEST
T ss_pred EEEEEEEEEEECCCCCEEEEEEEEEEEEEECCCCCCEECCCEEEEEEEEEEEECCCEEEEEEEEEC
T ss_conf 089999999862569889999999997688367886741888999889999979986999999969
No 7
>>2zfg_A Outer membrane protein F; OMPF porin, ordered waters, ION transport, phage recognition, transmembrane, transport; HET: C8E; 1.59A {Escherichia coli} (A:)
Probab=87.23 E-value=2 Score=22.12 Aligned_cols=241 Identities=14% Similarity=0.019 Sum_probs=124.3
Q ss_pred CCEEEEEEEEEECCCHHCCCCCCCCHHEEEEECCCCCCCHHHHEEEHH-----HEEECCEEEECC----CCCCCCCCEEE
Q ss_conf 861349999974220000001112100012103555511252000110-----000012220024----44455551023
Q gi|254780314|r 97 GDVTGVAKLKLAVDDVLSMQFAESDVRALAFTVPSSKLSVEELSLSMK-----GARLGYYKSWSD----EVNPVYSPTTL 167 (351)
Q Consensus 97 g~~tgv~~~~~~~d~~~~~~~~~~d~~a~~~~~~Ss~l~ldeayLdi~-----GfRaG~FySWWD----EtddIgS~~TL 167 (351)
..++.+..|.+.++..-. +.. -++..+..+++|+-++ -++.|...+..+ ..|++......
T Consensus 53 ~gl~~~~~lE~~~~~~~~------~~~-----~~~~~~~~R~ayvGl~~~~~G~v~~Gr~~~~~~~~~~~~d~~~~~~~~ 121 (340)
T 2zfg_A 53 SDLTGYGQWEYNFQGNNS------EGA-----DAQTGNKTRLAFAGLKYADVGSFDYGRNYGVVYDALGYTDMLPEFGGD 121 (340)
T ss_dssp SSEEEEEEEEEEEESSSC------SST-----TTTTTCEEEEEEEEEEETTTEEEEEEEEECTTHHHHTTTCCCSSSCCT
T ss_pred CCCEEEEEEEEEEECCCC------CCC-----CCCCCCCCEEEEEEEECCCCEEEEEECCCCHHHHHHCCCCCCCCCCCC
T ss_conf 981999999988986788------767-----777664202789964317753899851165676420234530003665
Q ss_pred EC---CCCCCCCCCEEEEEEE-CCCEEEEE--EHHHC-----CCCCCCCEEEEEEEEEEEECCEEEEEEEEEEC------
Q ss_conf 11---2224443322689982-57545103--30321-----46666540347889634541268999852211------
Q gi|254780314|r 168 YN---DARGLDKMMSLSYRHS-FGLLKAGL--STDLL-----QKDGLKQVLGIGYMASYAIGKIRSTVTGGYDA------ 230 (351)
Q Consensus 168 ~N---d~rg~dk~~SirYqYe-~G~F~AGi--SvDeL-----E~dg~~n~VGV~g~vsg~aGavS~qltGGyDt------ 230 (351)
.+ .......-++++|.-. ...|+.++ +...- .........+......+....+.....-.+..
T Consensus 122 ~~~~~~~~~~~~~~~~~y~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 201 (340)
T 2zfg_A 122 TAYSDDFFVGRVGGVATYRNSNFFGLVDGLNFAVQYLGKNERDTARRSNGDGVGGSISYEYEGFGIVGAYGAADRTNLQE 201 (340)
T ss_dssp TCCTTSTTSSEEEEEEEEEESHHHHTSTTEEEEEEEECCBCCSSSTTCBCCEEEEEEEEEETTEEEEEEEEEEECCHHHH
T ss_pred CCCCCCCCCCCCCCEEEEECCEECCEEEEEEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCC
T ss_conf 32245434566555279712130340555899999802356665444555413433120468825678898760466533
Q ss_pred ------CCCCCEEEEEEEECCCCCCEEEEEEEEECCCCC-----------CCCCCCEEEEEEEEEEECEEEEECCCEEEE
Q ss_conf ------466512798886136788202467887338640-----------001121136643556311047860452540
Q gi|254780314|r 231 ------GTNNVAIRANISSPVSRAGTLDCGAVWASGDNS-----------YYDKSKYSVFAGYKFDVAKSITISGGGQYF 293 (351)
Q Consensus 231 ------d~eeGAIRAl~ta~iG~PGTlglAgVwASgpNa-----------YY~~SEWaVAAeYaikaTDKl~ITPG~QY~ 293 (351)
+...-..+.-+.-+.+ |-+|+..-.+...... .+....|.+.+.|.+. .++.+.-+.+|.
T Consensus 202 ~~~~~~~~~~~~~~~~a~y~~~-~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~--~~~~~~~~y~~~ 278 (340)
T 2zfg_A 202 AQPLGNGKKAEQWATGLKYDAN-NIYLAANYGETRNATPITNKFTNTSGFANKTQDVLLVAQYQFD--FGLRPSIAYTKS 278 (340)
T ss_dssp TSSBCCCSEEEEEEEEEEEEET-TEEEEEEEEEEESCSEEEETTTTEEEECSEEEEEEEEEEECCT--TSEEEEEEEEEE
T ss_pred CCCCCCCCCCEEEEECCEEEEC-CEEEEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEEEEEEC--CCEEEEEEEEEE
T ss_conf 4344564310144111167603-2899999988751233234445555542025789999999846--773789999999
Q ss_pred CCC----CCCCCCEEEEEEEEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCCCCHHCCC
Q ss_conf 456----7678522778778888851591277898732742113542346631001101139
Q gi|254780314|r 294 GDI----NKTGKDGWSAGISAKYMISSGLEAQASVAFNDNFVKKGVAIDKGVDLSVGLKKSF 351 (351)
Q Consensus 294 gd~----~~sg~DaWk~GlTvDYqItegL~tK~SVqY~D~~~~~~~~~d~g~d~t~gl~~sf 351 (351)
..- ...+.+.+...+-++|.+...+..-+.++|.+.--.-....++..-.++|+.-.|
T Consensus 279 ~~~~~~~~~~~~~~~~~~vg~~Y~lsk~~~~y~~~~~~~~~~~~~~~~~~~~~~~~G~r~~F 340 (340)
T 2zfg_A 279 KAKDVEGIGDVDLVNYFEVGATYYFNKNMSTYVDYIINQIDSDNKLGVGSDDTVAVGIVYQF 340 (340)
T ss_dssp EEEEETTTEEEEEEEEEEEEEEEEEETTEEEEEEEEEECCCTTCTTCCCCBCEEEEEEEEEC
T ss_pred ECCCCCCCCCCCCEEEEEEEEEEEECCCEEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEEC
T ss_conf 60355677776623899999999916998999999995235776677766879999999989
No 8
>>1p4t_A Outer membrane protein NSPA; beta barrel; HET: CXE; 2.55A {Neisseria meningitidis} (A:)
Probab=85.32 E-value=2.5 Score=21.50 Aligned_cols=117 Identities=11% Similarity=0.038 Sum_probs=69.6
Q ss_pred CCEEEEEEHHHCCCC--C-CCCEEEEEEEEEEEECCEEEEEEEEEECCCCCCEEEEEEEECCCCCCEEEEEEEEECCCCC
Q ss_conf 754510330321466--6-6540347889634541268999852211466512798886136788202467887338640
Q gi|254780314|r 187 GLLKAGLSTDLLQKD--G-LKQVLGIGYMASYAIGKIRSTVTGGYDAGTNNVAIRANISSPVSRAGTLDCGAVWASGDNS 263 (351)
Q Consensus 187 G~F~AGiSvDeLE~d--g-~~n~VGV~g~vsg~aGavS~qltGGyDtd~eeGAIRAl~ta~iG~PGTlglAgVwASgpNa 263 (351)
+.||.|..+-....+ . ..+.......+++.+..++..+...|-....+.. .
T Consensus 4 ~~~yvg~~~G~~~~~~~~~~~~~~~~g~~~GY~fn~~~~e~~~~~~~~~~~~~--------------------------~ 57 (155)
T 1p4t_A 4 SGFYVQADAAHAKASSSLGSAKGFSPRISAGYRINDLRFAVDYTRYKNYKAPS--------------------------T 57 (155)
T ss_dssp EEEEEEEEEEEEEEECSSCEEEEECCEEEEEEEETTEEEEEEEEEEEESSCCS--------------------------S
T ss_pred CCEEEEEECEEEECCCCCCCCCCEEEEEEEEEECCCEEEEEEEEEECCCCCCC--------------------------C
T ss_conf 64289786417613476677885748999999807999999999953546787--------------------------0
Q ss_pred CCCCCCEEEEEEEEEEECEEEEECC--CEEEEC-CC-------CCCCCCEEEEEEEEEEEEECCCEEEEEEEECCC
Q ss_conf 0011211366435563110478604--525404-56-------767852277877888885159127789873274
Q gi|254780314|r 264 YYDKSKYSVFAGYKFDVAKSITISG--GGQYFG-DI-------NKTGKDGWSAGISAKYMISSGLEAQASVAFNDN 329 (351)
Q Consensus 264 YY~~SEWaVAAeYaikaTDKl~ITP--G~QY~g-d~-------~~sg~DaWk~GlTvDYqItegL~tK~SVqY~D~ 329 (351)
-.......+.+.|.+.++|++.+=. |+-|+- ++ .....-.|..|+-++|.|++++..++..+|.+-
T Consensus 58 ~~~~~~~~l~~~~~~~~~~~~~~Y~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~y~i~~~~~~~~~y~y~~~ 133 (155)
T 1p4t_A 58 DFKLYSIGASAIYDFDTQSPVKPYLGARLSLNRASVDLGGSDSFSQTSIGLGVLTGVSYAVTPNVDLDAGYRYNYI 133 (155)
T ss_dssp CCEEEEEEEEEEEECCCSSSEEEEEEEEEEEEEEEEEETTEEEECCCEEEEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EEEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEEEECCCCCCCCCCEEEEEEEEEEEEEECCCEEEEEEEEEEEC
T ss_conf 2578899999999843678566999988999999820155565566327314731799994589999999999976
No 9
>>1orm_A Outer membrane protein X; OMPX, trosy, DHPC, detergents, lipids, micelles; NMR {Escherichia coli} (A:)
Probab=82.65 E-value=0.25 Score=27.79 Aligned_cols=70 Identities=19% Similarity=0.258 Sum_probs=51.3
Q ss_pred CCCCCCCCCCEEEEEEEEEEECEEEEECC--CEEEEC-CCC-------CCCCCEEEEEEEEEEEEECCCEEEEEEEECCC
Q ss_conf 86400011211366435563110478604--525404-567-------67852277877888885159127789873274
Q gi|254780314|r 260 GDNSYYDKSKYSVFAGYKFDVAKSITISG--GGQYFG-DIN-------KTGKDGWSAGISAKYMISSGLEAQASVAFNDN 329 (351)
Q Consensus 260 gpNaYY~~SEWaVAAeYaikaTDKl~ITP--G~QY~g-d~~-------~sg~DaWk~GlTvDYqItegL~tK~SVqY~D~ 329 (351)
..+.-.....+.+.+.|.+...+++.+-. |+.|+. +.. ....-.|.+|+-++|+|++++..++..+|.+-
T Consensus 53 ~~~~~~~~~~~~l~~~~~~~~~~~~~~Y~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~y~l~~~~~~~~ey~~~~~ 132 (148)
T 1orm_A 53 SSGDYNKNQYYGITAGPAYRINDWASIYGVVGVGYGKFQTTEYPTYKNDTSDYGFSYGAGLQFNPMENVALDFSYEQSRI 132 (148)
T ss_dssp SSCCSCCSCCCBCCBCCCCCCTTTCCCCCCEECBCCSCSCCSSSSCCCCCCCCCCEECCCCCCCCSSSCBCCCCCCCCCS
T ss_pred CCCCEEEEEEEEEEEEEEEEECCCEEEEEEEEEEEEEEEECCCCCCCCCCCEEEEEEECCEEEECCCCEEEEEEEEEEEC
T ss_conf 34622221289999888896078646999986778984421377644565404388843179972788799999999746
No 10
>>2odj_A Porin D; outer membrane protein, beta-barrel, amino acid transport; HET: C8E; 2.90A {Pseudomonas aeruginosa PAO1} (A:)
Probab=70.82 E-value=7.1 Score=18.72 Aligned_cols=59 Identities=12% Similarity=0.042 Sum_probs=34.2
Q ss_pred CEEEEEEEEEEEC--EEEEECCCEEEEC----------------CCCCCCCCEEEEEEEEEEEEEC----CCEEEEEEEE
Q ss_conf 1136643556311--0478604525404----------------5676785227787788888515----9127789873
Q gi|254780314|r 269 KYSVFAGYKFDVA--KSITISGGGQYFG----------------DINKTGKDGWSAGISAKYMISS----GLEAQASVAF 326 (351)
Q Consensus 269 EWaVAAeYaikaT--DKl~ITPG~QY~g----------------d~~~sg~DaWk~GlTvDYqIte----gL~tK~SVqY 326 (351)
-|.+-+.|.|+.. ..|++...-.|+. .......+.+-..+.+.|+|.+ +|..++--.+
T Consensus 315 ~~~~~~~y~~~~~g~~Gl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~Y~~~~g~~K~L~~~~~~~~ 394 (428)
T 2odj_A 315 SWQARYDLNLASYGVPGLTFXVRYINGKDIDGTKXSDNNVGYKNYGYGEDGKHHETNLEAKYVVQSGPAKDLSFRIRQAW 394 (428)
T ss_dssp EEEEEEEECTTSSSCTTEEEEEEEEEEEEECCTTCCSSCTTTSSSCCCSSEEEEEEEEEEEEECCSSTTTTCEEEEEEEE
T ss_pred EEEEEEEECCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCEEEEEEEE
T ss_conf 59998873231245788679999998633556544344322113455667741589789999978887578389999999
Q ss_pred C
Q ss_conf 2
Q gi|254780314|r 327 N 327 (351)
Q Consensus 327 ~ 327 (351)
.
T Consensus 395 ~ 395 (428)
T 2odj_A 395 H 395 (428)
T ss_dssp E
T ss_pred E
T ss_conf 9
No 11
>>2f1v_A Outer membrane protein W; outer membrane protein beta barrel; 2.70A {Escherichia coli K12} PDB: 2f1t_A (A:)
Probab=64.99 E-value=9.3 Score=17.99 Aligned_cols=31 Identities=19% Similarity=0.185 Sum_probs=27.0
Q ss_pred CCCEEEEEEEEEEEEECCCEEEEEEEECCCC
Q ss_conf 8522778778888851591277898732742
Q gi|254780314|r 300 GKDGWSAGISAKYMISSGLEAQASVAFNDNF 330 (351)
Q Consensus 300 g~DaWk~GlTvDYqItegL~tK~SVqY~D~~ 330 (351)
.+-+|.+|+-++|.|++++...+..+|.+..
T Consensus 130 ~~~~~~~g~G~~y~l~~~~~l~~eyry~~~~ 160 (197)
T 2f1v_A 130 DSWGAAGQVGVDYLINRDWLVNMSVWYMDID 160 (197)
T ss_dssp CEEEEEEEEEEEEECSSSEEEEEEEEEECCE
T ss_pred CCEEEEEECCEEEECCCCEEEEEEEEEEECC
T ss_conf 6383899734899907983999999999745
No 12
>>2k0l_A Outer membrane protein A; OMPA, trosy, sidechain, DHPC micelles; NMR {Klebsiella pneumoniae} (A:)
Probab=59.80 E-value=12 Score=17.40 Aligned_cols=69 Identities=7% Similarity=0.104 Sum_probs=49.2
Q ss_pred CCCCCCCCEEEEEEEEEEECEEEEECCCEE--EEC---CCC-------CCC---CCEEEEEEEEEEEEECCCEEEEEEEE
Q ss_conf 400011211366435563110478604525--404---567-------678---52277877888885159127789873
Q gi|254780314|r 262 NSYYDKSKYSVFAGYKFDVAKSITISGGGQ--YFG---DIN-------KTG---KDGWSAGISAKYMISSGLEAQASVAF 326 (351)
Q Consensus 262 NaYY~~SEWaVAAeYaikaTDKl~ITPG~Q--Y~g---d~~-------~sg---~DaWk~GlTvDYqItegL~tK~SVqY 326 (351)
+.-.+...+.+.+.|.+..++++..-+++. |.. +.. ... +-.|.+|+.++|.|++++...+...|
T Consensus 86 ~~~~~~~~~~~~~~y~~~~~~~~~~y~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~y~l~~~~~l~~~~~y 165 (216)
T 2k0l_A 86 NGAFKAQGVQLTAKLGYPITDDLDIYTRLGGMVWRADSKGNYASTGVSRSEHDTGVSPVFAGGVEWAVTRDIATRLEYQW 165 (216)
T ss_dssp CCSSCCCEEEEEEEEEEESSSSEEEEEEEEEEEEECCCCCSCCCSSSCCCCCCEEEEEEEEEEEEEECSSSCEEEEEESS
T ss_pred CCCEEEEEEEEEEEEEEEEECCCEEEEEEEEEEEEECCEEECCCCCCCCCCCCCCCCCEECCEEEEEECCCEEEEEEEEE
T ss_conf 76268887889999998620241177774478986011120145763211345630313512379983699799999999
Q ss_pred CCCC
Q ss_conf 2742
Q gi|254780314|r 327 NDNF 330 (351)
Q Consensus 327 ~D~~ 330 (351)
.+..
T Consensus 166 ~~~~ 169 (216)
T 2k0l_A 166 VNNI 169 (216)
T ss_dssp CSSC
T ss_pred EECC
T ss_conf 9536
No 13
>>2qtk_A Probable porin; outer membrane protein, beta barrel, vanillate transport; HET: C8E; 2.80A {Pseudomonas aeruginosa} (A:)
Probab=53.05 E-value=15 Score=16.71 Aligned_cols=128 Identities=13% Similarity=0.146 Sum_probs=77.3
Q ss_pred CCCCCEEEEEEEEEEEECCEEEEEEEEEECCCCCC----------EEEEEEEECCCCCCEEEEEEEEECCCCCC------
Q ss_conf 66654034788963454126899985221146651----------27988861367882024678873386400------
Q gi|254780314|r 201 DGLKQVLGIGYMASYAIGKIRSTVTGGYDAGTNNV----------AIRANISSPVSRAGTLDCGAVWASGDNSY------ 264 (351)
Q Consensus 201 dg~~n~VGV~g~vsg~aGavS~qltGGyDtd~eeG----------AIRAl~ta~iG~PGTlglAgVwASgpNaY------ 264 (351)
+...+..++......+++.++..+.+.|-...++| ...+++....+ +-++.++-...++...+
T Consensus 203 ~d~~~~~~~~~~y~~~~~~~~~~~~~~y~~~~~~g~~~~~~~d~~~~~~~~~~~~~-~~~~~~gy~~~~~~~~~~~~~~~ 281 (390)
T 2qtk_A 203 EDVYRQSYANLLHKQRVGDWTLGANLGLFVDRDDGAARAGEIDSHTVYGLFSAGIG-LHTFYLGLQKVGGDSGWQSVYGS 281 (390)
T ss_dssp TTTEEEEEEEEEEEEEETTEEEEEEEEEEEEEECTTCTTCCCEEEEEEEEEEEEET-TEEEEEEEEEEEESSCCCCBTTC
T ss_pred CCHHHHEEEEEEEEEECCCCEEEEEEEEEEEECCCCCCCCCCCHHHEEEEEEEEEC-CEEEEEEEEEEECCCCCEEECCC
T ss_conf 13665302546873233651056502889997446534564542423258899986-67999886986066772131278
Q ss_pred --------------CCCCCEEEEEEEEEEECE----EEEECCCEEEECCC---CCCCCCEEEEEEEEEEEEEC----CCE
Q ss_conf --------------011211366435563110----47860452540456---76785227787788888515----912
Q gi|254780314|r 265 --------------YDKSKYSVFAGYKFDVAK----SITISGGGQYFGDI---NKTGKDGWSAGISAKYMISS----GLE 319 (351)
Q Consensus 265 --------------Y~~SEWaVAAeYaikaTD----Kl~ITPG~QY~gd~---~~sg~DaWk~GlTvDYqIte----gL~ 319 (351)
...-|.+....+.++..+ .|++.-.--|+.+. +..+.+.+...+.+.|++.+ +|.
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~gl~~~~~y~~~~~~~~~~~~~~~~~E~~~~~~Y~~~~g~~k~l~ 361 (390)
T 2qtk_A 282 SGRSMGNDMFNGNFTNADERSWQVRYDYDFVGLGWPGLIGMVRYGHGSNATTKAGSGGKEWERDVELGYTVQSGPLARLN 361 (390)
T ss_dssp CCTTSTTCBTTBCSCSBTCEEEEEEEEEEGGGGTCTTEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEECCSSTTTTCE
T ss_pred CCCCEEEEEEECCCCCCCCCEEEEEEEEEECCCCCCCEEEEEEEEEEECCCCCCCCCCCCEEEEEEEEEEECCCCCCCCE
T ss_conf 77511655543134479971589999997212588774999999971046466677886169989999998776658858
Q ss_pred EEEEEEECCC
Q ss_conf 7789873274
Q gi|254780314|r 320 AQASVAFNDN 329 (351)
Q Consensus 320 tK~SVqY~D~ 329 (351)
.++--.+.+.
T Consensus 362 ~~~~y~~~~~ 371 (390)
T 2qtk_A 362 VRLNHASNRR 371 (390)
T ss_dssp EEEEEEEEEE
T ss_pred EEEEEEEEEC
T ss_conf 9999878506
No 14
>>2j1n_A Outer membrane protein C; beta-barrel, ION transport, non-specific porin, general porin, osmoporin, transmembrane transport; HET: D12; 2.0A {Escherichia coli} PDB: 2j4u_P 2zle_D 2ixx_A* 2ixw_A* 1osm_A* (A:)
Probab=45.83 E-value=19 Score=16.01 Aligned_cols=217 Identities=8% Similarity=-0.116 Sum_probs=104.3
Q ss_pred CCHHHHEEEHH-----HEEECCEEEE----CCCCCCCCCCEEEECC-------CCCCCCCCEEEE-EEECCCEEEEEEHH
Q ss_conf 11252000110-----0000122200----2444455551023112-------224443322689-98257545103303
Q gi|254780314|r 134 LSVEELSLSMK-----GARLGYYKSW----SDEVNPVYSPTTLYND-------ARGLDKMMSLSY-RHSFGLLKAGLSTD 196 (351)
Q Consensus 134 l~ldeayLdi~-----GfRaG~FySW----WDEtddIgS~~TL~Nd-------~rg~dk~~SirY-qYe~G~F~AGiSvD 196 (351)
+.-+++|+-|. -+++|..++- .+.+|++......... ....-.-++++| ....+.|..+++.-
T Consensus 71 ~~~R~ayvGl~~~~~G~v~~Gr~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~ 150 (346)
T 2j1n_A 71 SWTRVAFAGLKFQDVGSFDYGRNYGVVYDVTSWTDVLPEFGGDTYGSDNFMQQRGNGFATYRNTDFFGLVDGLNFAVQYQ 150 (346)
T ss_dssp EEEEEEEEEEEETTTEEEEEEEEECTTHHHHGGGCCCSSSCCCSSCSSSTTSSEEEEEEEEEEEHHHHTSTTEEEEEEEE
T ss_pred CCCEEEEEEEECCCCEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEEEEEEE
T ss_conf 21037898235188338998300463534553214532235553112344455436548962565442355688999886
Q ss_pred HCCCCCC-----------------CCEEEEEEEEEEEECCEEEEEEEEEECCC-------------CCCEEEEEEEECCC
Q ss_conf 2146666-----------------54034788963454126899985221146-------------65127988861367
Q gi|254780314|r 197 LLQKDGL-----------------KQVLGIGYMASYAIGKIRSTVTGGYDAGT-------------NNVAIRANISSPVS 246 (351)
Q Consensus 197 eLE~dg~-----------------~n~VGV~g~vsg~aGavS~qltGGyDtd~-------------eeGAIRAl~ta~iG 246 (351)
.-++.+. .+.-+....+.+..+++........-... ..-..+.-+.-..+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~ 230 (346)
T 2j1n_A 151 GKNGNPSGEGFTSGVTNNGRDALRQNGDGVGGSITYDYEGFGIGGAISSSKRTDAQNTAAYIGNGDRAETYTGGLKYDAN 230 (346)
T ss_dssp CCBCBCSSSCCCSSBCTTCCCGGGCBCCEEEEEEEEEETTEEEEEEEEEEECCTTTSSTTSBCCCSEEEEEEEEEEEEET
T ss_pred ECCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCHHHEEEECCCCCCCC
T ss_conf 14566566422333023555322235510110456404881366677611345543222001344111023101200136
Q ss_pred CCCEEEEEEEEECCC----CCCCCCCCEEEEEEEEEEECEEEEECCCEEEECCCC-----CCCCCEEEEEEEEEEEEECC
Q ss_conf 882024678873386----400011211366435563110478604525404567-----67852277877888885159
Q gi|254780314|r 247 RAGTLDCGAVWASGD----NSYYDKSKYSVFAGYKFDVAKSITISGGGQYFGDIN-----KTGKDGWSAGISAKYMISSG 317 (351)
Q Consensus 247 ~PGTlglAgVwASgp----NaYY~~SEWaVAAeYaikaTDKl~ITPG~QY~gd~~-----~sg~DaWk~GlTvDYqIteg 317 (351)
|-+|....-..... .+......+.+......+++..+.+.-+.++.-.-. ..+.+....-+.+||.+...
T Consensus 231 -~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Y~~sk~ 309 (346)
T 2j1n_A 231 -NIYLAAQYTQTYNATRVGSLGWANKAQNFEAVAQYQFDFGLRPSLAYLQSKGKNLGRGYDDEDILKYVDVGATYYFNKN 309 (346)
T ss_dssp -TEEEEEEEEEEESCSBCTTSBBCSEEEEEEEEEEECCTTSEEEEEEEEEEEEESCSTTCCSEEEEEEEEEEEEEESSSS
T ss_pred -CEEEEEEEEEEEECCCCCCCCCCCCEEEEEEEEEEEECCCEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEEECCCC
T ss_conf -4688767776530355666542110146999999984467168999999962434667787651699999999981699
Q ss_pred CEEEEEEEECCCCCCCCCCC---CCCCCCCCCHHCCC
Q ss_conf 12778987327421135423---46631001101139
Q gi|254780314|r 318 LEAQASVAFNDNFVKKGVAI---DKGVDLSVGLKKSF 351 (351)
Q Consensus 318 L~tK~SVqY~D~~~~~~~~~---d~g~d~t~gl~~sf 351 (351)
...-+...|.++--...... .+-.-.++||.-.|
T Consensus 310 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~vGlr~~F 346 (346)
T 2j1n_A 310 MSTYVDYKINLLDDNQFTRDAGINTDNIVALGLVYQF 346 (346)
T ss_dssp EEEEEEEEEECCCCCHHHHHHTCCCSCEEEEEEEEEC
T ss_pred EEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEC
T ss_conf 8999999985356642233467766778999999989
No 15
>>3iag_C Recombining binding protein suppressor of hairless; protein-DNA complex, signaling, transcription, notch, activator, alternative splicing; HET: XYL; 2.00A {Mus musculus} PDB: 3brg_C* 2f8x_C (C:149-308)
Probab=45.58 E-value=17 Score=16.38 Aligned_cols=30 Identities=27% Similarity=0.289 Sum_probs=22.5
Q ss_pred CCCCCEEEECCCCCCCCCCEEEEEE-ECCCEEE
Q ss_conf 5555102311222444332268998-2575451
Q gi|254780314|r 160 PVYSPTTLYNDARGLDKMMSLSYRH-SFGLLKA 191 (351)
Q Consensus 160 dIgS~~TL~Nd~rg~dk~~SirYqY-e~G~F~A 191 (351)
.-||.+-|||-+|+|+- |-||.. |+|.|-|
T Consensus 8 ~sGs~VsLFNRlrSQTV--sTrYl~ve~~~f~a 38 (160)
T 3iag_C 8 ASGTKVALFNRLRSQTV--STRYLHVEGGNFHA 38 (160)
T ss_dssp BTTEEEEEEECSSSCGG--GCEEEEEETTEEEE
T ss_pred CCCCEEEEEEECCCCCC--CEEEEEECCCCEEE
T ss_conf 47999986630036411--12689952885476
No 16
>>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} (A:1-145,A:464-703)
Probab=42.26 E-value=9.2 Score=18.01 Aligned_cols=39 Identities=13% Similarity=0.020 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 000111256312025666665410136877655433342
Q gi|254780314|r 46 VGNVLPHITKVGGSLEKSLQARYHKLNGNNEFNSLAYDI 84 (351)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~lng~~e~n~~~~d~ 84 (351)
--|-.|||-.+.+.+-+-.-|||+++.|++-.-...||.
T Consensus 44 Y~ng~~HiGH~~~~~~~Dv~aRy~r~~G~~v~~~~G~D~ 82 (385)
T 1gax_A 44 NVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDH 82 (385)
T ss_dssp BSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 988962354779899999999998747998899984067
No 17
>>3jty_A BENF-like porin; PFL_1329, benzoate transporter, efflux pump, structural genomics, PSI-2, protein structure initiative; HET: LDA; 2.58A {Pseudomonas fluorescens pf-5} (A:)
Probab=37.16 E-value=26 Score=15.17 Aligned_cols=147 Identities=14% Similarity=0.156 Sum_probs=79.2
Q ss_pred EEEEEECCCEEEEEEHHHCCCCCCCCEEEEEEEEEEEECCEEEEEEEEEECCCC-----CC-----EEEEEEEECCCCCC
Q ss_conf 689982575451033032146666540347889634541268999852211466-----51-----27988861367882
Q gi|254780314|r 180 LSYRHSFGLLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGGYDAGTN-----NV-----AIRANISSPVSRAG 249 (351)
Q Consensus 180 irYqYe~G~F~AGiSvDeLE~dg~~n~VGV~g~vsg~aGavS~qltGGyDtd~e-----eG-----AIRAl~ta~iG~PG 249 (351)
.+|.+..+.+.+.+--=.+ +...|..++......+++.++..+...|-...+ .+ ..-+++....+ +-
T Consensus 186 ~~y~~~~~~l~~~~~~~~~--~d~~~~~~~~~~y~~~~~~~~l~~~~~y~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~ 262 (402)
T 3jty_A 186 AEYAFNDKRTQIALWNAQL--KDIYSQQFINLIHSQPLGDWTLGANLGFFYGKEDGSARAGDMENRTWSGLFSAKYG-GN 262 (402)
T ss_dssp EEEEEGGGTEEEEEEEEEE--TTTEEEEEEEEEEEEEETTEEEEEEEEEEEEEECTTCTTCCCEEEEEEEEEEEEET-TE
T ss_pred EEEEECCCCEEEEEEEECC--CHHHHHHEEEEEEEEECCCCEEEEEEEEEEECCCCCCCCCCCCHHHEEEEEEEEEC-CE
T ss_conf 7887148854898871115--01676404535677783871288847999961566533467576673157799996-57
Q ss_pred EEEEEEEEECCCCCCC----------------------CCCCEEEEEEEEEEECEE--EEECCCEEEECCC---CCCCCC
Q ss_conf 0246788733864000----------------------112113664355631104--7860452540456---767852
Q gi|254780314|r 250 TLDCGAVWASGDNSYY----------------------DKSKYSVFAGYKFDVAKS--ITISGGGQYFGDI---NKTGKD 302 (351)
Q Consensus 250 TlglAgVwASgpNaYY----------------------~~SEWaVAAeYaikaTDK--l~ITPG~QY~gd~---~~sg~D 302 (351)
+|.++-...++...+. ..--|.+-+.|.+..... |+++-.-.|+.+. +..+.+
T Consensus 263 ~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~y~~~~~~~~gl~~~~~y~~~~~~~~~~~~~~~ 342 (402)
T 3jty_A 263 TFYVGLQKLTGDSAWMRVNGTSGGTLANDSYNASYDNAKEKSWQVRHDYNFAALGVPGLTLMNRYISGSNVHTATVSDGK 342 (402)
T ss_dssp EEEEEEEEEEESSCCCCBTTCCCTTSTTCCSSCCCCSBTCEEEEEEEEEETTTTTCTTEEEEEEEEEEEEEBCSSCSSEE
T ss_pred EEEEEEEEECCCCCEEEECCCCCCEEEEEEEECCCCCCCCCEEEEEEEEEECCCCCCCEEEEEEEEEEECCCCCCCCCCC
T ss_conf 99998899837786152058987248841210312369971799999998411467872999999972146467677874
Q ss_pred EEEEEEEEEEEEEC----CCEEEEEEEECCC
Q ss_conf 27787788888515----9127789873274
Q gi|254780314|r 303 GWSAGISAKYMISS----GLEAQASVAFNDN 329 (351)
Q Consensus 303 aWk~GlTvDYqIte----gL~tK~SVqY~D~ 329 (351)
.|-.-+.+.|++.+ +|..++--.+.+.
T Consensus 343 ~~E~~~~~~Y~~~~g~lK~l~~~~~y~~~~~ 373 (402)
T 3jty_A 343 EWGRESEVAYTVQSGTLKNLNLKWRNSTMRR 373 (402)
T ss_dssp EEEEEEEEEEECCSSSSCSCEEEEEEEEEEE
T ss_pred EEEEEEEEEEEECCCCCCCCEEEEEEEEEEC
T ss_conf 2799999999867876588489999999836
No 18
>>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} (A:47-181,A:437-531)
Probab=29.59 E-value=35 Score=14.40 Aligned_cols=64 Identities=16% Similarity=0.144 Sum_probs=45.2
Q ss_pred CCCEEEEEEE-EEEECEEEEECCCE---EEECCCCCCCCCEEEEE-------EEEEEEEECCCEE-----EEEEEECCCC
Q ss_conf 1211366435-56311047860452---54045676785227787-------7888885159127-----7898732742
Q gi|254780314|r 267 KSKYSVFAGY-KFDVAKSITISGGG---QYFGDINKTGKDGWSAG-------ISAKYMISSGLEA-----QASVAFNDNF 330 (351)
Q Consensus 267 ~SEWaVAAeY-aikaTDKl~ITPG~---QY~gd~~~sg~DaWk~G-------lTvDYqItegL~t-----K~SVqY~D~~ 330 (351)
.-|+.+..+| ++++.=++..+.|. .++|+....+.+.|+.. +++.+++.+.+.. ++...|++..
T Consensus 125 ~ve~~~p~~y~~~~a~~~vR~S~~i~i~~~~G~~~~~~~~~~~l~~~~~~~s~~~~~~~~~~~~~~~~~iQ~a~~Yt~~~ 204 (230)
T 1pcx_A 125 VMEYMAPKEYTCMETVMRARGSTGLRMSRFYGHFFNRSSDLCAFSTMPRDQSYLFEVNVDESIMADYCYVQVAVLLSLNN 204 (230)
T ss_dssp EEEEECCGGGCCEEEEEEEEECTTEEEEEEESSSBCSSSSEEEESSCCSSCCEEEEEEECSCCCSSEEEEEEEEEEECTT
T ss_pred CEEEECCHHHHEEEEEEEEEECCCCEEEEEECCCCCCCCCCEEEECCCCCCEEEEEEEECCCCCCCEEEEEEEEEEECCC
T ss_conf 68998886874136899999379823776688756788875145445778469999980576778737999999999289
No 19
>>3dwo_X Probable outer membrane protein; beta barrel; HET: C8E; 2.20A {Pseudomonas aeruginosa} (X:)
Probab=27.89 E-value=37 Score=14.21 Aligned_cols=63 Identities=19% Similarity=0.284 Sum_probs=45.3
Q ss_pred CCCEEEEEEEEEEECEEEEECCCEEEECCCC--------CCCCCEEEEEEEEEEEEECCCEEEEEEEECCC
Q ss_conf 1211366435563110478604525404567--------67852277877888885159127789873274
Q gi|254780314|r 267 KSKYSVFAGYKFDVAKSITISGGGQYFGDIN--------KTGKDGWSAGISAKYMISSGLEAQASVAFNDN 329 (351)
Q Consensus 267 ~SEWaVAAeYaikaTDKl~ITPG~QY~gd~~--------~sg~DaWk~GlTvDYqItegL~tK~SVqY~D~ 329 (351)
..+|.+.++-..+.+++|.+..+..|-+... .....-|.+.+.+.|++..+....+++++.--
T Consensus 334 ~~~~g~el~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~n~ 404 (451)
T 3dwo_X 334 RNTWTLAVGGDYKVTDQWTMRAGVAYDQTPTHNATRDPRIPDGDRYFASLGAGYRFQSMPELSIDAAYSRQ 404 (451)
T ss_dssp CCEEEEEEEEEEESSSSEEEEEEEEEECCSCCTTTCCSSSCCCCEEEEEEEEEEECSSSSSEEEEEEEEEE
T ss_pred CCCEEEEEEEEEEECCCEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCEEEEEEEEEE
T ss_conf 31125888899994897899999996667878543153100578779998899997898628999999999
No 20
>>2qom_A Serine protease ESPP; outer membrane protein, beta-barrel, beta-domain, autotransporter, hydrolase, plasmid, secreted, transmembrane; 2.66A {Escherichia coli O157} (A:)
Probab=27.55 E-value=38 Score=14.18 Aligned_cols=58 Identities=10% Similarity=-0.008 Sum_probs=35.1
Q ss_pred EEEEEEEEEEECEEEEECCCEEEE-CCCCCCCCCEEEEEEEEEEEEECCCEEEEEEEEC
Q ss_conf 136643556311047860452540-4567678522778778888851591277898732
Q gi|254780314|r 270 YSVFAGYKFDVAKSITISGGGQYF-GDINKTGKDGWSAGISAKYMISSGLEAQASVAFN 327 (351)
Q Consensus 270 WaVAAeYaikaTDKl~ITPG~QY~-gd~~~sg~DaWk~GlTvDYqItegL~tK~SVqY~ 327 (351)
|.+-+.|...-.++-.+..+..-+ -......++...+++-++++|.+++...+.+++.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~ 258 (285)
T 2qom_A 200 ARAGLGYQFDLLANGETVLRDASGEKRIKGEKDSRMLMSVGLNAEIRDNVRFGLEFEKS 258 (285)
T ss_dssp EEEEEEEEEEEEETCTTBCCCSSSSCCSSSSEEEEEEEEEEEEEEETTTEEECEEEEEE
T ss_pred EEEEEEEEEECCCCCEEEEECCCCCEEECCCCCCEEEEEEEEEEEECCCEEEEEEEEEE
T ss_conf 99999999721788528971345413503688867999998999989999999999999
No 21
>>2q03_A Uncharacterized protein; YP_563039.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Shewanella denitrificans OS217} (A:)
Probab=25.85 E-value=41 Score=13.99 Aligned_cols=98 Identities=15% Similarity=0.060 Sum_probs=56.2
Q ss_pred CEEEECCCCCCCCCCEEEECCCCCCCCCCEEEEEEECCCEEEEEEHHHC----CCCCCCCEEE---EEEEEEEEECCEEE
Q ss_conf 2220024444555510231122244433226899825754510330321----4666654034---78896345412689
Q gi|254780314|r 150 YYKSWSDEVNPVYSPTTLYNDARGLDKMMSLSYRHSFGLLKAGLSTDLL----QKDGLKQVLG---IGYMASYAIGKIRS 222 (351)
Q Consensus 150 ~FySWWDEtddIgS~~TL~Nd~rg~dk~~SirYqYe~G~F~AGiSvDeL----E~dg~~n~VG---V~g~vsg~aGavS~ 222 (351)
+=-.=||| +|....++.+.+. .+++.|+|+++. .|.|.-|. ..++...-|| +.+.+.++-|.|..
T Consensus 15 F~V~~w~e-----~~~~~~~~~~~l~-ra~v~k~~sG~l--~G~s~~e~l~~y~~~g~A~yvg~E~f~Gtl~Gr~GsFvl 86 (138)
T 2q03_A 15 FQITAWDE-----TSYFESDNGAKLT-QAVITQSYQGVL--QGHSEIRYLXSYQDNANATFVGFEHFTGSLGDKKGSFIL 86 (138)
T ss_dssp EEEEEEEE-----EEEEECTTSCEEE-EEEEEEEECSSE--EEEEEEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEEE
T ss_pred EEEECCCC-----CCCCCCCCCCCEE-EEEEEEEEEEEE--EEEEEEEEEEEECCCCCEEEEEEEEEEEEECCEEEEEEE
T ss_conf 99925888-----7654568886148-999998864177--789999999998189847899999999998990388999
Q ss_pred EEEEEEECCCCCCEEEEEEEECCCCCCEEEEEEEEECC
Q ss_conf 99852211466512798886136788202467887338
Q gi|254780314|r 223 TVTGGYDAGTNNVAIRANISSPVSRAGTLDCGAVWASG 260 (351)
Q Consensus 223 qltGGyDtd~eeGAIRAl~ta~iG~PGTlglAgVwASg 260 (351)
|-.|-+|... .+.-.++--| -||=.|+++--++
T Consensus 87 qh~G~~~~g~----~~~~~~IVpg-SGTGeL~GlsG~g 119 (138)
T 2q03_A 87 QHKGLFAAGV----ASSEFELVER-SATGDFVHLVGKG 119 (138)
T ss_dssp EEEEEEETTE----EEEEEEECTT-CCEETTTTEEEEE
T ss_pred EEEEEECCCC----EEEEEEEECC-CCCCCCCCCEEEE
T ss_conf 9775883882----5277999747-8773006737678
No 22
>>2fgq_X OMP32, outer membrane porin protein 32; malate, outer membrane protein; HET: BOG; 1.45A {Delftia acidovorans} (X:)
Probab=23.19 E-value=46 Score=13.67 Aligned_cols=223 Identities=13% Similarity=0.056 Sum_probs=110.8
Q ss_pred CEEEEEEEEEECCCCEEEEEEEEEECCCHHCCCCCCCCHHEEEEECCCCCCCHHHHEE----EHHHEEECCEEEECC---
Q ss_conf 2000148997056861349999974220000001112100012103555511252000----110000012220024---
Q gi|254780314|r 84 IPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVRALAFTVPSSKLSVEELSL----SMKGARLGYYKSWSD--- 156 (351)
Q Consensus 84 ~~~~g~~~~~a~~g~~tgv~~~~~~~d~~~~~~~~~~d~~a~~~~~~Ss~l~ldeayL----di~GfRaG~FySWWD--- 156 (351)
+-.||.-++. ..++.+.++.+.++-.-.++-.-. ..+++|+ +.+-++.|..++-++
T Consensus 39 ~g~kg~~~l~---~G~~a~~~~E~~~~~~~~~~~~~~--------------~~r~~~~gl~~~~G~v~~Gr~~~~~~~~~ 101 (332)
T 2fgq_X 39 LGLRGTEDLG---GGLKAGFWLEGEIFGDDGNASGFN--------------FKRRSTVSLSGNFGEVRLGRDLVPTSQKL 101 (332)
T ss_dssp EEEEEEEEEE---TTEEEEEEEEEECCTTTTSTTCCC--------------CCSEEEEEEEETTEEEEESSEECHHHHHH
T ss_pred EEEEEEEECC---CCEEEEEEEEEEEECCCCCCCCCC--------------EEEEEEEEEECCCCEEEEEEECCHHHCCC
T ss_conf 9999999668---973999999955898889877764--------------36899999845776899998525011133
Q ss_pred -CCCCCCCCEE-----EE------CCCCCC-CCCCEEEEEE-ECCCEEEEEEHHHCCCCC----CCCEEEEEEEEEEEEC
Q ss_conf -4445555102-----31------122244-4332268998-257545103303214666----6540347889634541
Q gi|254780314|r 157 -EVNPVYSPTT-----LY------NDARGL-DKMMSLSYRH-SFGLLKAGLSTDLLQKDG----LKQVLGIGYMASYAIG 218 (351)
Q Consensus 157 -EtddIgS~~T-----L~------Nd~rg~-dk~~SirYqY-e~G~F~AGiSvDeLE~dg----~~n~VGV~g~vsg~aG 218 (351)
.+|+...... .+ ...+.. ..=++++|.. +.+.|..+.....-+.+. ....-+....+.+..+
T Consensus 102 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~ 181 (332)
T 2fgq_X 102 TSYDLFSATGIGPFMGFRNWAAGQGADDNGIRANNLISYYTPNFGGFNAGFGYAFDEKQTIGTADSVGRYIGGYVAYDNG 181 (332)
T ss_dssp GGGCTTTTCSSSSCCCSSCTTCCCSTTTTSSEESSEEEEECCCBTTEEEEEEEECCTTCCBTTBSSTTCEEEEEEEEECS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEECC
T ss_conf 10133333454553333432355577676504521589977753427789999506887642122347325446887068
Q ss_pred CEEEEEEEEEECC------CCCCEEEEEEEECCCCCCEEEEEEEEEC--CCCCC---CCCCCEEEEEEEEEEECEEEEEC
Q ss_conf 2689998522114------6651279888613678820246788733--86400---01121136643556311047860
Q gi|254780314|r 219 KIRSTVTGGYDAG------TNNVAIRANISSPVSRAGTLDCGAVWAS--GDNSY---YDKSKYSVFAGYKFDVAKSITIS 287 (351)
Q Consensus 219 avS~qltGGyDtd------~eeGAIRAl~ta~iG~PGTlglAgVwAS--gpNaY---Y~~SEWaVAAeYaikaTDKl~IT 287 (351)
.+.......+... ..+-+.+.-+....+ -|.+++.|.. ..+.+ +...-+.+.+.| ..+.++++.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~y~~~---~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~y--~~~~~~~~~ 256 (332)
T 2fgq_X 182 PLSASLGLAQQKTAVGGLATDRDEITLGASYNFG---VAKLSGLLQQTKFKRDIGGDIKTNSYMLGASA--PVGGVGEVK 256 (332)
T ss_dssp SEEEEEEEEEEEEEETTEEEEEEEEEEEEEEECS---SCEEEEEEEEEEEEETTSCEEEEEEEEEEEEE--EETTTEEEE
T ss_pred CEEEEEEEEEECCCCCCCCCCCCEEEEEEEEEEE---EEEEEEEEEEEEECCCCCCEEEEEEEEEEEEE--EECCEEEEE
T ss_conf 6689988765134654533453159998899977---68999999865611475764876369998999--962517899
Q ss_pred CCEEEECCCCCCCCCEEEEEEEEEEEEECCCEEEEEEEECCC
Q ss_conf 452540456767852277877888885159127789873274
Q gi|254780314|r 288 GGGQYFGDINKTGKDGWSAGISAKYMISSGLEAQASVAFNDN 329 (351)
Q Consensus 288 PG~QY~gd~~~sg~DaWk~GlTvDYqItegL~tK~SVqY~D~ 329 (351)
-+..|. +-.....+.|..-+.++|.+......-+...|.++
T Consensus 257 ~~~~~~-~~~~~~~~~~~~~~g~~y~l~k~~~~ya~~~~~~~ 297 (332)
T 2fgq_X 257 LQYALY-DQKAIDSKAHQITLGYVHNLSKRTALYGNLAFLKN 297 (332)
T ss_dssp EEEEEE-EEGGGTEEEEEEEEEEEEESSSSEEEEEEEEEEEE
T ss_pred EEEEEE-ECCCCCCCCEEEEEEEEEECCCCCHHHHEEHHEEC
T ss_conf 999999-71467897259999999964667187330241212
No 23
>>2vgd_A Enxyn11A; glycoside hydrolase, xylanase, beta jelly roll, hydrolase; HET: XYP FX3; 1.8A {Escherichia coli} PDB: 2vuj_A 2vul_A* (A:)
Probab=22.70 E-value=29 Score=14.88 Aligned_cols=72 Identities=18% Similarity=0.263 Sum_probs=36.4
Q ss_pred EHHHEEECCEEEECCCCCCCCCCEEEECCCCCCCCCCEEEEE-EECCCEEEEEEH--HHCCCCCCC--CEEEEEEEEEEE
Q ss_conf 110000012220024444555510231122244433226899-825754510330--321466665--403478896345
Q gi|254780314|r 142 SMKGARLGYYKSWSDEVNPVYSPTTLYNDARGLDKMMSLSYR-HSFGLLKAGLST--DLLQKDGLK--QVLGIGYMASYA 216 (351)
Q Consensus 142 di~GfRaG~FySWWDEtddIgS~~TL~Nd~rg~dk~~SirYq-Ye~G~F~AGiSv--DeLE~dg~~--n~VGV~g~vsg~ 216 (351)
.--|...||||+||.+.- + +..|. +++|.|.+--+- |.|-.-|-+ ..--|.+...+.
T Consensus 30 n~~g~~~Gy~Y~~W~d~~---g---------------~~~~t~~~gG~fs~~W~n~gnfv~gkGw~~gs~r~i~y~g~~~ 91 (218)
T 2vgd_A 30 SQTGTNNGFYYSFWKDSP---G---------------TVNFCLQSGGRYTSNWSGINNWVGGKGWQTGSRRNITYSGSFN 91 (218)
T ss_dssp CEEEEETTEEEEEEECSS---S---------------EEEEEECSTTEEEEEEESCSEEEEEEEESSCCSCEEEEEEEEE
T ss_pred CCCCEECCEEEEEEECCC---C---------------CEEEEECCCCEEEEEECCCCCEEEECCCCCCCCCEEEEEEEEC
T ss_conf 873016998999996799---8---------------5788818998899998289988976865799984798857876
Q ss_pred ECCEEEEEEEEEECC
Q ss_conf 412689998522114
Q gi|254780314|r 217 IGKIRSTVTGGYDAG 231 (351)
Q Consensus 217 aGavS~qltGGyDtd 231 (351)
.++-+|--+=||-..
T Consensus 92 ~~GnsYl~vYGWt~n 106 (218)
T 2vgd_A 92 SPGNGYLALYGWTTN 106 (218)
T ss_dssp CSSSEEEEEEEEEET
T ss_pred CCCCEEEEEEECCCC
T ss_conf 899789999941489
No 24
>>1xnk_A Endoxylanase 11A; glycoside hydrolase, family 11, glycosidase, thioinhibitor, sulphur containing inhibitor; HET: XS2; 1.55A {Chaetomium thermophilum} (A:)
Probab=22.38 E-value=29 Score=14.91 Aligned_cols=71 Identities=20% Similarity=0.219 Sum_probs=34.4
Q ss_pred HHEEECCEEEECCCCCCCCCCEEEECCCCCCCCCCEEEEEEECCCEEEEEEH--HHCCCCCCC---CEEEEEEEEEEEEC
Q ss_conf 0000012220024444555510231122244433226899825754510330--321466665---40347889634541
Q gi|254780314|r 144 KGARLGYYKSWSDEVNPVYSPTTLYNDARGLDKMMSLSYRHSFGLLKAGLST--DLLQKDGLK---QVLGIGYMASYAIG 218 (351)
Q Consensus 144 ~GfRaG~FySWWDEtddIgS~~TL~Nd~rg~dk~~SirYqYe~G~F~AGiSv--DeLE~dg~~---n~VGV~g~vsg~aG 218 (351)
-|...||||+||.+.. +.++..| ++.|.|-+--+- |+|-.-|-+ ..--|.+...+..+
T Consensus 8 ~G~~~gy~y~~W~dg~---g~~~~t~--------------~~~G~fs~~W~~~gnfv~gkGw~~gs~~~~i~y~~~~~~~ 70 (196)
T 1xnk_A 8 TGTHNGYYYSFWTDGQ---GNIRFNL--------------ESGGQYSVTWSGNGNWVGGKGWNPGTDNRVINYTADYRPN 70 (196)
T ss_dssp EEEETTEEEEEEECSC---SEEEEEE--------------CSTTEEEEEEESSCEEEEEEEESSCCTTCEEEEEEEEEEE
T ss_pred CEEECCEEEEEEECCC---CCEEEEE--------------CCCCEEEEEECCCCCEEEECCCCCCCCCCEEEEEEEECCC
T ss_conf 7707998999997699---8679995--------------8998899998389858987565899997459897798479
Q ss_pred CEEEEEEEEEECC
Q ss_conf 2689998522114
Q gi|254780314|r 219 KIRSTVTGGYDAG 231 (351)
Q Consensus 219 avS~qltGGyDtd 231 (351)
+-||--+=||-..
T Consensus 71 G~sYl~vYGWt~n 83 (196)
T 1xnk_A 71 GNSYLAVYGWTRN 83 (196)
T ss_dssp EEEEEEEEEEEET
T ss_pred CCEEEEEEECCCC
T ss_conf 8689999815379
No 25
>>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus HB8} (A:1-78,A:595-821)
Probab=21.98 E-value=36 Score=14.29 Aligned_cols=30 Identities=30% Similarity=0.460 Sum_probs=23.6
Q ss_pred HHHHHHHHHHCHHHHHHHHHHHHCCCCCCC
Q ss_conf 001112563120256666654101368776
Q gi|254780314|r 47 GNVLPHITKVGGSLEKSLQARYHKLNGNNE 76 (351)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~lng~~e 76 (351)
-|-.|||-..-...-+-..+||++|+|.+-
T Consensus 49 ~ng~lH~GH~~~~~~~D~~aR~~rm~G~~v 78 (305)
T 1ile_A 49 ANGLPHVGHAQARSYKDLFPRYKTMRGYYA 78 (305)
T ss_dssp TTSCCCTTHHHHHHHHHHHHHHHHHTTCBC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 788603427788899999999987389987
Done!