Query gi|254780314|ref|YP_003064727.1| outer membrane protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 351 No_of_seqs 25 out of 27 Neff 1.8 Searched_HMMs 23785 Date Mon May 30 07:27:20 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780314.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3prn_A Porin; integral membran 97.3 0.0092 3.9E-07 35.8 17.0 153 178-351 131-289 (289) 2 2por_A Porin; HET: C8E; 1.80A 97.2 0.012 4.9E-07 35.1 17.8 158 178-351 116-301 (301) 3 2wjr_A Probable N-acetylneuram 96.5 0.041 1.7E-06 31.7 12.6 27 303-329 165-191 (214) 4 2fgq_X OMP32, outer membrane p 96.2 0.066 2.8E-06 30.4 16.3 221 84-329 39-297 (332) 5 1pho_A Phosphoporin; outer mem 93.1 0.43 1.8E-05 25.4 21.7 251 84-351 38-330 (330) 6 2f1v_A Outer membrane protein 91.2 0.73 3.1E-05 23.9 10.2 29 301-329 131-159 (197) 7 2k0l_A Outer membrane protein 90.2 0.89 3.7E-05 23.4 10.1 50 302-351 141-192 (216) 8 3a2s_X Outer membrane protein 81.6 2.5 0.00011 20.6 14.9 240 85-351 58-355 (355) 9 2x55_A Coagulase/fibrinolysin; 79.8 2.9 0.00012 20.2 9.6 117 204-335 123-256 (293) 10 1qjp_A Outer membrane protein 71.7 4.8 0.0002 18.8 10.7 66 267-332 74-149 (171) 11 1fep_A FEPA, ferric enterobact 69.8 5.2 0.00022 18.6 7.1 26 267-292 407-432 (724) 12 2f1c_X OMPG, outer membrane pr 68.3 5.6 0.00024 18.4 7.7 81 255-344 175-268 (286) 13 1hdg_O Holo-D-glyceraldehyde-3 58.7 4.3 0.00018 19.2 2.1 101 36-156 193-313 (332) 14 1orm_A Outer membrane protein 48.9 1.3 5.6E-05 22.3 -1.8 60 270-329 63-132 (148) 15 2q03_A Uncharacterized protein 46.2 13 0.00056 16.0 5.8 95 152-259 17-118 (138) 16 1i78_A Protease VII; integral 41.3 16 0.00067 15.6 9.2 159 151-335 83-262 (297) 17 1rm4_O Glyceraldehyde 3-phosph 41.2 12 0.00051 16.3 2.2 44 36-87 195-238 (337) 18 1p4t_A Outer membrane protein 40.9 16 0.00068 15.5 13.8 28 302-329 106-133 (155) 19 2zfg_A Outer membrane protein 39.0 17 0.00073 15.3 15.5 235 97-351 53-340 (340) 20 1u8f_O GAPDH, glyceraldehyde-3 38.2 14 0.00058 16.0 2.1 44 36-87 195-238 (335) 21 3doc_A Glyceraldehyde 3-phosph 36.9 11 0.00045 16.6 1.3 44 36-87 195-238 (335) 22 1obf_O Glyceraldehyde 3-phosph 34.9 15 0.00064 15.7 1.8 44 36-87 196-239 (335) 23 1h4g_A Xylanase; glycoside hyd 30.6 23 0.00095 14.6 2.2 14 144-157 8-21 (207) 24 1yna_A XYNA, endo-1,4-beta-xyl 29.4 23 0.00096 14.6 2.0 15 144-158 7-21 (194) 25 3dwn_A Long-chain fatty acid t 28.7 26 0.0011 14.3 7.8 60 270-329 325-392 (427) 26 1gad_O D-glyceraldehyde-3-phos 26.3 28 0.0012 14.0 2.4 44 36-87 192-235 (330) 27 2d2i_A Glyceraldehyde 3-phosph 26.2 15 0.00064 15.7 0.6 101 36-156 197-317 (380) 28 3bs0_A TODX; beta barrel, oute 25.8 29 0.0012 14.0 14.1 31 301-331 331-361 (439) 29 1te1_B GH11, endo-1,4-xylanase 25.1 30 0.0012 13.9 2.0 23 144-169 8-30 (190) 30 3cmc_O GAPDH, glyceraldehyde-3 23.9 31 0.0013 13.8 2.3 44 36-87 193-236 (334) 31 3h9e_A Glyceraldehyde-3-phosph 23.0 27 0.0011 14.1 1.4 42 38-87 201-242 (346) 32 2g82_O GAPDH, glyceraldehyde-3 22.1 34 0.0014 13.5 2.1 44 36-87 191-234 (331) 33 2vok_A 52 kDa RO protein; poly 21.0 36 0.0015 13.4 2.3 21 248-268 125-145 (188) 34 2b4r_O Glyceraldehyde-3-phosph 20.9 36 0.0015 13.4 2.3 42 38-87 208-249 (345) 35 3e5r_O PP38, glyceraldehyde-3- 20.8 11 0.00047 16.5 -0.9 43 36-86 197-239 (337) 36 3ids_C GAPDH, glyceraldehyde-3 20.4 37 0.0015 13.3 1.7 43 37-87 211-253 (359) 37 3fhh_A Outer membrane heme rec 20.3 37 0.0016 13.3 6.8 57 269-325 348-411 (640) No 1 >3prn_A Porin; integral membrane protein, pore eyelet mutant; HET: C8E; 1.90A {Rhodobacter blasticus} SCOP: f.4.3.1 PDB: 1bh3_A* 1prn_A* 7prn_A* 6prn_A* 5prn_A* 2prn_A* 8prn_A* 1h6s_1 Probab=97.30 E-value=0.0092 Score=35.76 Aligned_cols=153 Identities=13% Similarity=0.082 Sum_probs=95.0 Q ss_pred CEEEEEEECCCEEEEEEHHHCCCCCCC--CEEEEEEEEEEEECCEEEEEEEEEECCCC----CCEEEEEEEECCCCCCEE Q ss_conf 226899825754510330321466665--40347889634541268999852211466----512798886136788202 Q gi|254780314|r 178 MSLSYRHSFGLLKAGLSTDLLQKDGLK--QVLGIGYMASYAIGKIRSTVTGGYDAGTN----NVAIRANISSPVSRAGTL 251 (351) Q Consensus 178 ~SirYqYe~G~F~AGiSvDeLE~dg~~--n~VGV~g~vsg~aGavS~qltGGyDtd~e----eGAIRAl~ta~iG~PGTl 251 (351) ..+.|.++.+.|+.+++-..-+.++.. +...+...+.+..+++. +...|+.... .-..+..+... .+.+ T Consensus 131 ~~~~~s~~~~Gf~~~~~y~~~~~~~~~~~~~~~~~~~~~y~~~~~~--~~~~y~~~~~~~~~~~~~~~~~~y~---~~~~ 205 (289) T 3prn_A 131 NGIAVTYSISGVNLYLSYVDPDQTVDSSLVTEEFGIAADWSNDMIS--LAAAYTTDAGGIVDNDIAFVGAAYK---FNDA 205 (289) T ss_dssp EEEEEEEECSSEEEEEEEEETTTTSCGGGSCCEEEEEEEEECSSEE--EEEEEEESGGGCTTCCEEEEEEEEC---CSSS T ss_pred CEEEECCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCEE--EEEEEEECCCCCCCCCEEEEEEEEE---CCCE T ss_conf 1699652237710010021036666667756279999991168678--9999985057765542389989997---0643 Q ss_pred EEEEEEECCCCCCCCCCCEEEEEEEEEEECEEEEECCCEEEECCCCCCCCCEEEEEEEEEEEEECCCEEEEEEEECCCCC Q ss_conf 46788733864000112113664355631104786045254045676785227787788888515912778987327421 Q gi|254780314|r 252 DCGAVWASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQYFGDINKTGKDGWSAGISAKYMISSGLEAQASVAFNDNFV 331 (351) Q Consensus 252 glAgVwASgpNaYY~~SEWaVAAeYaikaTDKl~ITPG~QY~gd~~~sg~DaWk~GlTvDYqItegL~tK~SVqY~D~~~ 331 (351) .+++.+......=.+...|.+.+.|.+.+ + +..++|-..-.. .+.-..+|.++|++..++...+++++.|. T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~y~~g~---~--~~~~~y~~~~~~--~~~~~~~~g~~Y~l~~~~~l~a~~~~~~~-- 276 (289) T 3prn_A 206 GTVGLNWYDNGLSTAGDQVTLYGNYAFGA---T--TVRAYVSDIDRA--GADTAYGIGADYQFAEGVKVSGSVQSGFA-- 276 (289) T ss_dssp EEEEEEEEECTTSTTCSEEEEEEEEEETT---E--EEEEEEEEECST--TCCCEEEEEEEEEEETTEEEEEEEEECTT-- T ss_pred EEEEEEEEECCCCCCCEEEEEEEEEEECC---E--EEEEEEEECCCC--CCCCEEEEEEEEECCCCEEEEEEEEEECC-- T ss_conf 68999997214677502699877898377---7--899999860677--66448999999976999799999999538-- Q ss_pred CCCCCCCCCCCCCCCHHCCC Q ss_conf 13542346631001101139 Q gi|254780314|r 332 KKGVAIDKGVDLSVGLKKSF 351 (351) Q Consensus 332 ~~~~~~d~g~d~t~gl~~sf 351 (351) |+ .....|+.-+| T Consensus 277 ------d~-t~~~~Gv~~~F 289 (289) T 3prn_A 277 ------NE-TVADVGVRFDF 289 (289) T ss_dssp ------CC-EEEEEEEEEEC T ss_pred ------CC-CCEEEEEEEEC T ss_conf ------98-53603778889 No 2 >2por_A Porin; HET: C8E; 1.80A {Rhodobacter capsulatus} SCOP: f.4.3.1 PDB: 3por_A* Probab=97.21 E-value=0.012 Score=35.14 Aligned_cols=158 Identities=16% Similarity=0.102 Sum_probs=97.1 Q ss_pred CEEEE-EEECCCEEEEEEHHHCCCC--CCCCEEEEEEEEEEEECCEEEEEEEEEEC------CCCCCEEEEEEEECCCCC Q ss_conf 22689-9825754510330321466--66540347889634541268999852211------466512798886136788 Q gi|254780314|r 178 MSLSY-RHSFGLLKAGLSTDLLQKD--GLKQVLGIGYMASYAIGKIRSTVTGGYDA------GTNNVAIRANISSPVSRA 248 (351) Q Consensus 178 ~SirY-qYe~G~F~AGiSvDeLE~d--g~~n~VGV~g~vsg~aGavS~qltGGyDt------d~eeGAIRAl~ta~iG~P 248 (351) +++.| ..+.+.|..+++.-.-+.+ ...++-.....+.+..+++...+....-. ..+..+.++......+ T Consensus 116 ~~~~y~sp~~~g~~~~~~y~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~-- 193 (301) T 2por_A 116 NPVLLYTYSAGAFSVAASMSDGKVGETSEDDAQEMAVAAAYTFGNYTVGLGYEKIDSPDTALMADMEQLELAAIAKFG-- 193 (301) T ss_dssp BCEEEEEEEETTEEEEEEECCSBSTTSSCBCCEEEEEEEEEEETTEEEEEEEEEEECSCTTTSCCEEEEEEEEEEEET-- T ss_pred CEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCEEEEHHHCCCCCCCCCCCCCEEEEEEEEEEC-- T ss_conf 115999511266579999940787665445576115788751575020320011134431124554226541034204-- Q ss_pred CEEEEEEEEEC------------------CCCCCCCCCCEEEEEEEEEEECEEEEECCCEEEECCCCCCCCCEEEEEEEE Q ss_conf 20246788733------------------864000112113664355631104786045254045676785227787788 Q gi|254780314|r 249 GTLDCGAVWAS------------------GDNSYYDKSKYSVFAGYKFDVAKSITISGGGQYFGDINKTGKDGWSAGISA 310 (351) Q Consensus 249 GTlglAgVwAS------------------gpNaYY~~SEWaVAAeYaikaTDKl~ITPG~QY~gd~~~sg~DaWk~GlTv 310 (351) .+.+.+.+.. ......+...|.+.+.|.+.+ .+...+|.-.-+....+....+|-+ T Consensus 194 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~g~-----~~~~~~y~~~~~~~~~~~~~~~lG~ 267 (301) T 2por_A 194 -ATNVKAYYADGELDRDFARAVFDLTPVAAAATAVDHKAYGLSVDSTFGA-----TTVGGYVQVLDIDTIDDVTYYGLGA 267 (301) T ss_dssp -TEEEEEEEEEEEEEHHHHHHHTTCCCCSSCCCEEEEEEEEEEEEEEETT-----EEEEEEEEEEEETTTEEEEEEEEEE T ss_pred -CEEEEEEEEEEEECCCCCCCEEEEEECCCCCCCCCEEEEEEEEEEECCC-----EEEEEEEEEECCCCCCCEEEEEEEE T ss_conf -1788987765530123322101332013566542100489999998187-----7899999996368888538999999 Q ss_pred EEEEECCCEEEEEEEECCCCCCCCCCCCCCCC-CCCCHHCCC Q ss_conf 88851591277898732742113542346631-001101139 Q gi|254780314|r 311 KYMISSGLEAQASVAFNDNFVKKGVAIDKGVD-LSVGLKKSF 351 (351) Q Consensus 311 DYqItegL~tK~SVqY~D~~~~~~~~~d~g~d-~t~gl~~sf 351 (351) ||++..++...+.+.+.|. |+.++ ..+|+.-+| T Consensus 268 ~Y~lsk~~~~~~~y~~~~~--------d~~~~~~~~G~~~~F 301 (301) T 2por_A 268 SYDLGGGASIVGGIADNDL--------PNSDMVADLGVKFKF 301 (301) T ss_dssp EEEEETTEEEEEEEEEECS--------SSCCCEEEEEEEEEC T ss_pred EEECCCCEEEEEEEEEEEC--------CCCCEEEEEEEEEEC T ss_conf 9988999899999999816--------899647999879989 No 3 >2wjr_A Probable N-acetylneuraminic acid outer membrane channel protein NANC; cell membrane, ION transport, transmembrane, porin, transport; HET: EPE; 1.80A {Escherichia coli} PDB: 2wjq_A* Probab=96.53 E-value=0.041 Score=31.68 Aligned_cols=27 Identities=7% Similarity=0.188 Sum_probs=12.1 Q ss_pred EEEEEEEEEEEEECCCEEEEEEEECCC Q ss_conf 277877888885159127789873274 Q gi|254780314|r 303 GWSAGISAKYMISSGLEAQASVAFNDN 329 (351) Q Consensus 303 aWk~GlTvDYqItegL~tK~SVqY~D~ 329 (351) .|..-+.+-|++.+++..=+-+.+.|. T Consensus 165 ~~ehn~~~~Yk~~~~w~PYvE~g~v~~ 191 (214) T 2wjr_A 165 ATENAFVLQYHMTPDITPYIEYDYLDR 191 (214) T ss_dssp EEEEEEEEEECSSSSEEEEEEEEECCS T ss_pred EEEEEEEEEEEECCCCCCEEEEEEEEC T ss_conf 479999999997998521699998505 No 4 >2fgq_X OMP32, outer membrane porin protein 32; malate, outer membrane protein; HET: BOG; 1.45A {Delftia acidovorans} SCOP: f.4.3.1 PDB: 2fgr_A 1e54_A Probab=96.17 E-value=0.066 Score=30.41 Aligned_cols=221 Identities=15% Similarity=0.129 Sum_probs=115.6 Q ss_pred CEEEEEEEEEECCCCEEEEEEEEEECCCHHCCCCCCCCHHEEEEECCCCCCCHHHHEEEH----HHEEECCEEEECC--- Q ss_conf 200014899705686134999997422000000111210001210355551125200011----0000012220024--- Q gi|254780314|r 84 IPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVRALAFTVPSSKLSVEELSLSM----KGARLGYYKSWSD--- 156 (351) Q Consensus 84 ~~~~g~~~~~a~~g~~tgv~~~~~~~d~~~~~~~~~~d~~a~~~~~~Ss~l~ldeayLdi----~GfRaG~FySWWD--- 156 (351) +-.||.-++. +.++.+.+|....+.- +... +..+.-+++|+-| +-+|+|-.++-.. T Consensus 39 ~G~kg~e~Lg---~gl~a~~~lE~~~~~~-------~g~~-------~~~~~~R~a~vGl~~~~G~v~~Gr~~~~~~~~~ 101 (332) T 2fgq_X 39 LGLRGTEDLG---GGLKAGFWLEGEIFGD-------DGNA-------SGFNFKRRSTVSLSGNFGEVRLGRDLVPTSQKL 101 (332) T ss_dssp EEEEEEEEEE---TTEEEEEEEEEECCTT-------TTST-------TCCCCCSEEEEEEEETTEEEEESSEECHHHHHH T ss_pred EEEEEEEECC---CCEEEEEEEEEEEECC-------CCCC-------CCCCCCCEEEEEEECCCCEEEECCCCCHHHCCC T ss_conf 9999999568---9839999998108888-------9975-------666423349999816776899911154100121 Q ss_pred -CCCC-----CCCCEEEECCCC-------CCCCCCEEEEE-EECCCEEEEEEHHHCCCC--CCC--CEEEEEEEEEEEEC Q ss_conf -4445-----555102311222-------44433226899-825754510330321466--665--40347889634541 Q gi|254780314|r 157 -EVNP-----VYSPTTLYNDAR-------GLDKMMSLSYR-HSFGLLKAGLSTDLLQKD--GLK--QVLGIGYMASYAIG 218 (351) Q Consensus 157 -Etdd-----IgS~~TL~Nd~r-------g~dk~~SirYq-Ye~G~F~AGiSvDeLE~d--g~~--n~VGV~g~vsg~aG 218 (351) ..|+ +.+.....+... +.-.=++|+|+ -+.+.|+.+++.-.=+++ ... .+..+...+.+..| T Consensus 102 ~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~n~i~Y~sp~~~Gf~~~a~y~~~~~~~~~~~~~~~~~~~~~~~Y~~g 181 (332) T 2fgq_X 102 TSYDLFSATGIGPFMGFRNWAAGQGADDNGIRANNLISYYTPNFGGFNAGFGYAFDEKQTIGTADSVGRYIGGYVAYDNG 181 (332) T ss_dssp GGGCTTTTCSSSSCCCSSCTTCCCSTTTTSSEESSEEEEECCCBTTEEEEEEEECCTTCCBTTBSSTTCEEEEEEEEECS T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEECC T ss_conf 10144333454553333432355577665134144699976763767789999416787642355531110004687068 Q ss_pred CEEEEEEEEEECCCC--------CCEEEEEEEECCCCCCEEEEEEEEEC-----CCCCCCCCCCEEEEEEEEEEECEEEE Q ss_conf 268999852211466--------51279888613678820246788733-----86400011211366435563110478 Q gi|254780314|r 219 KIRSTVTGGYDAGTN--------NVAIRANISSPVSRAGTLDCGAVWAS-----GDNSYYDKSKYSVFAGYKFDVAKSIT 285 (351) Q Consensus 219 avS~qltGGyDtd~e--------eGAIRAl~ta~iG~PGTlglAgVwAS-----gpNaYY~~SEWaVAAeYaikaTDKl~ 285 (351) +++..+ +|+.... .-+.++-++-.++ |-+|+ +.|.. ....-.....|.+.+.|.+...-+++ T Consensus 182 ~l~~~~--~y~~~~~~~~~~~~~~~~~~~ga~y~~g-~~~l~--~~y~~~~~~~~~~~~~~~~~~~~~a~y~~~~~~~~~ 256 (332) T 2fgq_X 182 PLSASL--GLAQQKTAVGGLATDRDEITLGASYNFG-VAKLS--GLLQQTKFKRDIGGDIKTNSYMLGASAPVGGVGEVK 256 (332) T ss_dssp SEEEEE--EEEEEEEEETTEEEEEEEEEEEEEEECS-SCEEE--EEEEEEEEEETTSCEEEEEEEEEEEEEEETTTEEEE T ss_pred CEEEEE--EEEECCCCCCCCCCCCCEEEEEEEEEEC-CEEEE--EEEEEEEECCCCCCCCEEEEEEEEEEEEECCCEEEE T ss_conf 647995--3000144343444663138997589816-49999--999998821476774201048983699953607899 Q ss_pred ECCCEEEECCCCCCCCCEEEEEEEEEEEEECCCEEEEEEEECCC Q ss_conf 60452540456767852277877888885159127789873274 Q gi|254780314|r 286 ISGGGQYFGDINKTGKDGWSAGISAKYMISSGLEAQASVAFNDN 329 (351) Q Consensus 286 ITPG~QY~gd~~~sg~DaWk~GlTvDYqItegL~tK~SVqY~D~ 329 (351) . +..+. +.+..+.+.....|-+||++......-+.+.|.++ T Consensus 257 ~--~y~~~-~~~~~~~~~~~~~lg~~Y~lSKrT~lYa~~~~~~n 297 (332) T 2fgq_X 257 L--QYALY-DQKAIDSKAHQITLGYVHNLSKRTALYGNLAFLKN 297 (332) T ss_dssp E--EEEEE-EEGGGTEEEEEEEEEEEEESSSSEEEEEEEEEEEE T ss_pred E--EEEEE-CCCCCCCCCEEEEEEEEEECCCCCHHHHEEHEEEC T ss_conf 9--99998-46677887229999999952677155002530423 No 5 >1pho_A Phosphoporin; outer membrane protein; 3.00A {Escherichia coli} SCOP: f.4.3.1 Probab=93.14 E-value=0.43 Score=25.38 Aligned_cols=251 Identities=13% Similarity=0.074 Sum_probs=121.9 Q ss_pred CEEEEEEEEEECCCCEEEEEEEEEECCCHHCCCCCCCCHHEEEEECCCCCCCHHHHEEEHH-----HEEECCEEEECC-- Q ss_conf 2000148997056861349999974220000001112100012103555511252000110-----000012220024-- Q gi|254780314|r 84 IPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVRALAFTVPSSKLSVEELSLSMK-----GARLGYYKSWSD-- 156 (351) Q Consensus 84 ~~~~g~~~~~a~~g~~tgv~~~~~~~d~~~~~~~~~~d~~a~~~~~~Ss~l~ldeayLdi~-----GfRaG~FySWWD-- 156 (351) +-.||.-++ .+.++...++.+.++.- +. . -.+..+..+++|+-++ -+|.|...+.++ T Consensus 38 iG~~g~~~l---~~gl~a~~~lE~~~~~~-------~~-~-----~~~~~~~~r~~~vGl~~~~~G~l~~Gr~~t~~~~~ 101 (330) T 1pho_A 38 FGFKGETQI---NDQLTGYGRWEAEFAGN-------KA-E-----SDTAQQKTRLAFAGLKYKDLGSFDYGRNLGALYDV 101 (330) T ss_dssp EEEEEEECC---SSSEEEEEEEEEEEESS-------SC-T-----TCCCCEEEEEEEEEEEETTTEEEEEEEEECSTHHH T ss_pred EEEEEEEEC---CCCEEEEEEEEEEEECC-------CC-C-----CCCCCCCCEEEEEEEECCCCEEEEEEEECCHHHEE T ss_conf 999999997---99859999999989868-------98-7-----66777421048998744887899985206723022 Q ss_pred --CCCCCCCC--EE-EECCC-CCCCCCCEEEEEEEC-----CCEEEEEEHHHCCC---CCCCCEEEEEEEEEEEECCEEE Q ss_conf --44455551--02-31122-244433226899825-----75451033032146---6665403478896345412689 Q gi|254780314|r 157 --EVNPVYSP--TT-LYNDA-RGLDKMMSLSYRHSF-----GLLKAGLSTDLLQK---DGLKQVLGIGYMASYAIGKIRS 222 (351) Q Consensus 157 --EtddIgS~--~T-L~Nd~-rg~dk~~SirYqYe~-----G~F~AGiSvDeLE~---dg~~n~VGV~g~vsg~aGavS~ 222 (351) .+|++..- .. ...+. ..----++|+|.... ..+..++..+.-.. ....+..+....+++......+ T Consensus 102 ~~~~d~~~~~~~~~~~~~~~~~~~r~~~~v~y~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (330) T 1pho_A 102 EAWTDMFPEFGGDSSAQTDNFMTKRASGLATYRNTDFFGVIDGLNLTLQYQGKNENRDVKKQNGDGFGTSLTYDFGGSDF 181 (330) T ss_dssp HTTTCCSSSCCSCSSCCTTSTTTSEEEEEEEEEEESTTTTCTTEEEEEEEECCBCSSCSTTCBCSEEEEEEEEEETTTTE T ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCE T ss_conf 00034444345554333453345542535999545323402669999962136777654211245521455788225761 Q ss_pred EEEEEEECCCCC--------------CEEEEEEEECCCCCCEEEEEEEEECCCCC-----CCCCCCEEEEEEEEEEECEE Q ss_conf 998522114665--------------12798886136788202467887338640-----00112113664355631104 Q gi|254780314|r 223 TVTGGYDAGTNN--------------VAIRANISSPVSRAGTLDCGAVWASGDNS-----YYDKSKYSVFAGYKFDVAKS 283 (351) Q Consensus 223 qltGGyDtd~ee--------------GAIRAl~ta~iG~PGTlglAgVwASgpNa-----YY~~SEWaVAAeYaikaTDK 283 (351) .+.++|....+. -+.++-+.-+.+ |-+|....-+....+. -.....|.+.|.|.+....+ T Consensus 182 ~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~y~~~~~~~ 260 (330) T 1pho_A 182 AISGAYTNSDRTNEQNLQSRGTGKRAEAWATGLKYDAN-NIYLATFYSETRKMTPITGGFANKTQNFEAVAQYQFDFGLR 260 (330) T ss_dssp EEEEEEEEEECCGGGTTSSSSCSSEEEEEEEEEEEEET-TEEEEEEEEEEESCSCCSSSSCSEEEEEEEEEEECCSSSEE T ss_pred EEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEECC-CEEEEEEEEEEECCCCCCCCCCCCEEEEEEEEEEEECCCEE T ss_conf 57877761255544333334554202489999999814-18999898631016754456553157899999999446617 Q ss_pred EEECCCEEEECCCC--CCCCCEEEEEEEEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCCCCHHCCC Q ss_conf 78604525404567--678522778778888851591277898732742113542346631001101139 Q gi|254780314|r 284 ITISGGGQYFGDIN--KTGKDGWSAGISAKYMISSGLEAQASVAFNDNFVKKGVAIDKGVDLSVGLKKSF 351 (351) Q Consensus 284 l~ITPG~QY~gd~~--~sg~DaWk~GlTvDYqItegL~tK~SVqY~D~~~~~~~~~d~g~d~t~gl~~sf 351 (351) +...-......+.. ....+....-+-++|++......-++.++.+-=..++..+++.+-.++|+.-.| T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~Y~lsk~~~~y~ey~~~~~d~~~~~~~~~~~~~~vG~r~~F 330 (330) T 1pho_A 261 PSLGYVLSKGKDIEGIGDEDLVNYIDVGATYYFNKNMSAFVDYKINQLDSDNKLNINNDDIVAVGMTYQF 330 (330) T ss_dssp EEEEEEEEEEESBTTTBCCEEEEEEEEEEEEESSSSEEEEEEEEEECCCSSCTTCCCCCCEEEEEEEEEC T ss_pred EEEEEEEEECCCCCCCCCCCCEEEEEEEEEEEECCCEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEC T ss_conf 8999999961445677876525999999999917997999999998325776676666889999999989 No 6 >2f1v_A Outer membrane protein W; outer membrane protein beta barrel; 2.70A {Escherichia coli K12} PDB: 2f1t_A Probab=91.17 E-value=0.73 Score=23.91 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=26.3 Q ss_pred CCEEEEEEEEEEEEECCCEEEEEEEECCC Q ss_conf 52277877888885159127789873274 Q gi|254780314|r 301 KDGWSAGISAKYMISSGLEAQASVAFNDN 329 (351) Q Consensus 301 ~DaWk~GlTvDYqItegL~tK~SVqY~D~ 329 (351) .=+|.+|+=++|+|+++++.++..+|.|. T Consensus 131 ~~g~~~g~G~~Y~i~~~~sl~~eyry~~~ 159 (197) T 2f1v_A 131 SWGAAGQVGVDYLINRDWLVNMSVWYMDI 159 (197) T ss_dssp EEEEEEEEEEEEECSSSEEEEEEEEEECC T ss_pred CEEEEEECCEEEEECCCEEEEEEEEEEEC T ss_conf 38789962489991798399999999975 No 7 >2k0l_A Outer membrane protein A; OMPA, trosy, sidechain, DHPC micelles; NMR {Klebsiella pneumoniae} Probab=90.22 E-value=0.89 Score=23.38 Aligned_cols=50 Identities=12% Similarity=0.139 Sum_probs=33.3 Q ss_pred CEEEEEEEEEEEEECCCEEEEEEEECCCCCCCCCCCC--CCCCCCCCHHCCC Q ss_conf 2277877888885159127789873274211354234--6631001101139 Q gi|254780314|r 302 DGWSAGISAKYMISSGLEAQASVAFNDNFVKKGVAID--KGVDLSVGLKKSF 351 (351) Q Consensus 302 DaWk~GlTvDYqItegL~tK~SVqY~D~~~~~~~~~d--~g~d~t~gl~~sf 351 (351) -+|.+|+-+.|.|++++..++..+|.+.+-....... +-...++||.-.| T Consensus 141 ~~~~~G~G~~y~l~~~~s~~~ey~y~~~~~~~~~~~~~~d~~~~~~Gv~Y~F 192 (216) T 2k0l_A 141 VSPVFAGGVEWAVTRDIATRLEYQWVNNIGDAGTVGTRPDNGMLSLGVSYRF 192 (216) T ss_dssp EEEEEEEEEEEECSSSCEEEEEESSCSSCCCCSCCCCSSCSCCCEEEEEEEC T ss_pred CCCEECCEEEEEECCCEEEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEC T ss_conf 1310422279970799799999999964687655452222678999999999 No 8 >3a2s_X Outer membrane protein II; beta barrel, porin, neisseria mening cell membrane, cell outer membrane, ION transport, membrane transmembrane; HET: SUC LDA; 2.20A {Neisseria meningitidis} PDB: 3a2r_X* 3a2t_X* 3a2u_X* Probab=81.59 E-value=2.5 Score=20.56 Aligned_cols=240 Identities=13% Similarity=0.117 Sum_probs=122.7 Q ss_pred EEEEEEEEEECCCCEEEEEEEEEECCCHHCCCCCCCCHHEEEEECCCCCCCHHHHEEEH----HHEEECCEEEECC---- Q ss_conf 00014899705686134999997422000000111210001210355551125200011----0000012220024---- Q gi|254780314|r 85 PVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVRALAFTVPSSKLSVEELSLSM----KGARLGYYKSWSD---- 156 (351) Q Consensus 85 ~~~g~~~~~a~~g~~tgv~~~~~~~d~~~~~~~~~~d~~a~~~~~~Ss~l~ldeayLdi----~GfRaG~FySWWD---- 156 (351) -.||.-+.. +.++.+.++...++.. +.. +.+.-+++|+-| +-+|+|-.++-.+ T Consensus 58 G~kG~edLg---~Gl~a~~~lE~~~~~~-------~g~---------~~~~~R~~~vGl~~~~G~l~~Grq~t~~~~~~~ 118 (355) T 3a2s_X 58 GFKGQEDLG---NGMKAIWQLEQKASIA-------GTN---------SGWGNRQSFIGLKGGFGTVRAGNLNTVLKDSGD 118 (355) T ss_dssp EEEEEEEEE---TTEEEEEEEEEECCTT-------SCC---------CCSSCSSEEEEEEETTEEEEEEEEECHHHHHGG T ss_pred EEEEEEECC---CCEEEEEEEEEEEECC-------CCC---------CCCCCCEEEEEECCCCEEEEEEEECCHHHHCCC T ss_conf 999999779---9819999998545468-------886---------676664189997378269997131154563044 Q ss_pred CCCCCCCC-----EEEECC-CCCCCCCCEEEEEE-ECCCEEEEEEHHHCCCC--------CCCCEEEEEEEEEEEECCEE Q ss_conf 44455551-----023112-22444332268998-25754510330321466--------66540347889634541268 Q gi|254780314|r 157 EVNPVYSP-----TTLYND-ARGLDKMMSLSYRH-SFGLLKAGLSTDLLQKD--------GLKQVLGIGYMASYAIGKIR 221 (351) Q Consensus 157 EtddIgS~-----~TL~Nd-~rg~dk~~SirYqY-e~G~F~AGiSvDeLE~d--------g~~n~VGV~g~vsg~aGavS 221 (351) .+|+.... ..-... .+.-.--++|+|.. +++.|..+++--.-+.. ...........+.+..+++. T Consensus 119 ~~d~~~~~~~~~~~~~~~~~~~~~r~~nsi~Y~sp~~~G~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~g~~y~~~~~~ 198 (355) T 3a2s_X 119 NVNAWESGSNTEDVLGLGTIGRVESREISVRYDSPVFAGFSGSVQYVPRDNANDVDKYKHTKSSRESYHAGLKYENAGFF 198 (355) T ss_dssp GTCCCCCCGGGTTTSSCTTGGGGCCEEEEEEEECCCBTTEEEEEEEECHHHHCSTTTTSTTSCCCCEEEEEEEEEETTEE T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCE T ss_conf 23433246655443455543443453103898244437716889984044654432456555555432224000156510 Q ss_pred EEEEEEEECC--------------------CCCCEEEEEEEECCCCCCEEEEEEEEECCCCC--------CCCCCCEEEE Q ss_conf 9998522114--------------------66512798886136788202467887338640--------0011211366 Q gi|254780314|r 222 STVTGGYDAG--------------------TNNVAIRANISSPVSRAGTLDCGAVWASGDNS--------YYDKSKYSVF 273 (351) Q Consensus 222 ~qltGGyDtd--------------------~eeGAIRAl~ta~iG~PGTlglAgVwASgpNa--------YY~~SEWaVA 273 (351) ......+-.. ......+.....+.+ +..+.+++-+....+. ......|.+. T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (355) T 3a2s_X 199 GQYAGSFAKYADLNTDAERVAVNTANAHPVKDYQVHRVVAGYDAN-DLYVSVAGQYEAAKNNEVGSIKGKKHEQTQVAAT 277 (355) T ss_dssp EEEEEEEEEEEEECTTSCBCCTTCTTCEEEEEEEEEEEEEEEEET-TEEEEEEEEEEEEEECSSSTTTTCEEEEEEEEEE T ss_pred EECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEEEEEEEEC-CEEEEEEEEEEEEECCCCCCCCCCCCCCCEEEEE T ss_conf 011320001242245666531132124442321368999999845-7046631478863035555533533333136787 Q ss_pred EEEEEEECEEEEECCCEEEECCC-------CCCCCCEEEEEEEEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCCCC Q ss_conf 43556311047860452540456-------76785227787788888515912778987327421135423466310011 Q gi|254780314|r 274 AGYKFDVAKSITISGGGQYFGDI-------NKTGKDGWSAGISAKYMISSGLEAQASVAFNDNFVKKGVAIDKGVDLSVG 346 (351) Q Consensus 274 AeYaikaTDKl~ITPG~QY~gd~-------~~sg~DaWk~GlTvDYqItegL~tK~SVqY~D~~~~~~~~~d~g~d~t~g 346 (351) +.|.+.. .+|..+|...+ .....+.....|-+||.+......=+.+.|.++ +.+...++-.-.++| T Consensus 278 ~~y~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~Y~lSKrt~~Y~~~~~~~~--~~~~~~~~~~~~~~G 350 (355) T 3a2s_X 278 AAYRFGN-----VTPRVSYAHGFKAKVNGVKDANYQYDQVIVGADYDFSKRTSALVSAGWLKQ--GKGAGKVEQTASMVG 350 (355) T ss_dssp EEECBTT-----EEEEEEEEEECCEEETTEEEGGGCEEEEEEEEEEESSSSEEEEEEEEEEEE--SSTTSCEEEEEEEEE T ss_pred EEEEEEC-----CCEEEEEEEEEEEECCCCCCCCCCEEEEEEEEEEEECCCEEEEEEEEEEEC--CCCCCCCCEEEEEEE T ss_conf 8887741-----461478899998641466788887599999999980587389999999995--689888631799999 Q ss_pred HHCCC Q ss_conf 01139 Q gi|254780314|r 347 LKKSF 351 (351) Q Consensus 347 l~~sf 351 (351) |+..| T Consensus 351 lrh~F 355 (355) T 3a2s_X 351 LRHKF 355 (355) T ss_dssp EEEEC T ss_pred EEEEC T ss_conf 99989 No 9 >2x55_A Coagulase/fibrinolysin; plasminogen activator, transmembrane, aspartyl protease, CEL membrane, omptin, protease, hydrolase,; HET: C8E; 1.85A {Yersinia pestis} PDB: 2x56_A* 2x4m_A* Probab=79.79 E-value=2.9 Score=20.18 Aligned_cols=117 Identities=17% Similarity=0.189 Sum_probs=69.9 Q ss_pred CCEEEEEEEEEEEECCEEEEEEEEEECCCCCCEEEEEEEECCCCCCEEEEEEEEECCCCCCCCCCCEEEEEEEEEEECEE Q ss_conf 54034788963454126899985221146651279888613678820246788733864000112113664355631104 Q gi|254780314|r 204 KQVLGIGYMASYAIGKIRSTVTGGYDAGTNNVAIRANISSPVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYKFDVAKS 283 (351) Q Consensus 204 ~n~VGV~g~vsg~aGavS~qltGGyDtd~eeGAIRAl~ta~iG~PGTlglAgVwASgpNaYY~~SEWaVAAeYaikaTDK 283 (351) .+++.++.++|++.--+++..+||.-.-.. ++.+. .-+.+++ ++. -.-=|....-.+.++|++ ++ T Consensus 123 ~~~~~~Gv~~GYq~~~~s~~a~GG~y~Y~~-~~~~g--~~~~~~~---~I~------Ykq~f~~pyiGL~g~y~~---~~ 187 (293) T 2x55_A 123 DENYKAGITAGYQETRFSWTATGGSYSYNN-GAYTG--NFPKGVR---VIG------YNQRFSMPYIGLAGQYRI---ND 187 (293) T ss_dssp CSSEEEEEEEEEEEEEEEEEEESCEEEETT-TTEEE--ECCTTCE---EEE------EEEEEEEEEEEEEEEEEE---TT T ss_pred CCCCEEEEEEEEEEEECCEEECCCEEECCC-CCCCC--CCCCCCC---CEE------EEEECCCCEEEEEEEEEC---CC T ss_conf 786014457557873031054152687489-97221--4688871---056------888723101421357870---54 Q ss_pred EEECCCEEEECCCC-------------C----CCCCEEEEEEEEEEEEECCCEEEEEEEECCCCCCCCC Q ss_conf 78604525404567-------------6----7852277877888885159127789873274211354 Q gi|254780314|r 284 ITISGGGQYFGDIN-------------K----TGKDGWSAGISAKYMISSGLEAQASVAFNDNFVKKGV 335 (351) Q Consensus 284 l~ITPG~QY~gd~~-------------~----sg~DaWk~GlTvDYqItegL~tK~SVqY~D~~~~~~~ 335 (351) +.+...++|=.-.. + .+..-+.+++.+-|.|++++..++..||.-.+-+||- T Consensus 188 ~~l~~~~k~s~~v~a~d~D~H~~R~~~f~d~~k~~~~~~~~~~~~Y~vtp~~~l~ve~~~~~~~~~kg~ 256 (293) T 2x55_A 188 FELNALFKFSDWVRAHDNDEHYMRDLTFREKTSGSRYYGTVINAGYYVTPNAKVFAEFTYSKYDEGKGG 256 (293) T ss_dssp EEEEEEEEEEEEEEEEEEEEEGGGTEEEEEEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEECC---- T ss_pred CEEEEEEEECEEEEECCCCCCCCCCCEEEECCCCCCEEEEEEEEEEEECCCEEEEEEEEEEEECCCCCC T ss_conf 215068710238981245532335534662457875388877777864788379999999861025786 No 10 >1qjp_A Outer membrane protein A; HET: C8E; 1.65A {Escherichia coli} SCOP: f.4.1.1 PDB: 1bxw_A* 1g90_A 2ge4_A Probab=71.66 E-value=4.8 Score=18.84 Aligned_cols=66 Identities=11% Similarity=0.186 Sum_probs=43.2 Q ss_pred CCCEEEEEEEEEEECEEEEECC--CEEEEC-----CCC---CCCCCEEEEEEEEEEEEECCCEEEEEEEECCCCCC Q ss_conf 1211366435563110478604--525404-----567---67852277877888885159127789873274211 Q gi|254780314|r 267 KSKYSVFAGYKFDVAKSITISG--GGQYFG-----DIN---KTGKDGWSAGISAKYMISSGLEAQASVAFNDNFVK 332 (351) Q Consensus 267 ~SEWaVAAeYaikaTDKl~ITP--G~QY~g-----d~~---~sg~DaWk~GlTvDYqItegL~tK~SVqY~D~~~~ 332 (351) ..-+.+.+.+.+..++++..-+ |+-+.. +.. ...+..|.+|+=++|.|.+++..++..+|.++..+ T Consensus 74 ~~~~~~~~~~~~~~~~~~~~y~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~y~~~~~~~l~~~y~y~~~~~~ 149 (171) T 1qjp_A 74 AQGVQLTAKLGYPITDDLDIYTRLGGMVWRADTYSNVYGKNHDTGVSPVFAGGVEYAITPEIATRLEYQWTNNIGD 149 (171) T ss_dssp EEEEEEEEEEEEESSSSEEEEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEC---- T ss_pred EEEEEEEEEEEEECCCCEEEEEECCEEEEEEEEEECCCCCCCCCCCCEEEEEEEEEEECCCEEEEEEEEEEECCCC T ss_conf 8888897789994278614989502389974751103663056743458981699992699899999999971587 No 11 >1fep_A FEPA, ferric enterobactin receptor; outer membrane, iron transport, transport, TONB, signal, membrane protein; 2.40A {Escherichia coli K12} SCOP: f.4.3.3 Probab=69.80 E-value=5.2 Score=18.59 Aligned_cols=26 Identities=19% Similarity=0.447 Sum_probs=11.8 Q ss_pred CCCEEEEEEEEEEECEEEEECCCEEE Q ss_conf 12113664355631104786045254 Q gi|254780314|r 267 KSKYSVFAGYKFDVAKSITISGGGQY 292 (351) Q Consensus 267 ~SEWaVAAeYaikaTDKl~ITPG~QY 292 (351) ...+++.+++.++.+|+|.+++|+.| T Consensus 407 ~~~~~~y~~~~~~~~~~~~~~~G~R~ 432 (724) T 1fep_A 407 AEIFSLFAENNMELTDSTIVTPGLRF 432 (724) T ss_dssp EEEEEEEEEEEEECSSSEEEEEEEEE T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCC T ss_conf 33466777641100101032213001 No 12 >2f1c_X OMPG, outer membrane protein G; beta barrel; HET: C8E; 2.30A {Escherichia coli K12} PDB: 2wvp_A* 2jqy_A 2iwv_A* 2iww_A* Probab=68.29 E-value=5.6 Score=18.39 Aligned_cols=81 Identities=19% Similarity=0.166 Sum_probs=52.2 Q ss_pred EEEECCCCC-CCCCCCEEEEEEEEEEECEEEEECCCEEEECCC----------CCCCCCEEEEEEEEEEEEECCCEEEEE Q ss_conf 887338640-001121136643556311047860452540456----------767852277877888885159127789 Q gi|254780314|r 255 AVWASGDNS-YYDKSKYSVFAGYKFDVAKSITISGGGQYFGDI----------NKTGKDGWSAGISAKYMISSGLEAQAS 323 (351) Q Consensus 255 gVwASgpNa-YY~~SEWaVAAeYaikaTDKl~ITPG~QY~gd~----------~~sg~DaWk~GlTvDYqItegL~tK~S 323 (351) ..|....+. .-...||-|-+.+.++.- +|+|||=+-|-=+. ..-+++.-|.|+.+.|+|+.+|.--.- T Consensus 175 ~~~~~~~~~~~~~~~~~QiR~~~~~~~g-~~sispy~R~~l~~~~~~~~~~~~~~~~~~~~R~g~~~~Y~i~~~~~l~gE 253 (286) T 2f1c_X 175 RGFNMDDSRNNGEFSTQEIRAYLPLTLG-NHSVTPYTRIGLDRWSNWDWQDDIEREGHDFNRVGLFYGYDFQNGLSVSLE 253 (286) T ss_dssp EEECSSSSCCTTCEEEEEEEEECCEEET-TEEEEEEEEEEEEEECC------------CCEEEEEEEEEECSSSEEEEEE T ss_pred ECCCCCCCCCCCEEEEEEEEEEEEEEEC-CEEECEEEEEEECCCCCCCCCCCCEEECCCCEEEEEEEECCCCCCEEEEEE T ss_conf 0311578755631588899999998608-718874699860454112666773274355269999981103896699999 Q ss_pred EEE--CCCCCCCCCCCCCCCCCC Q ss_conf 873--274211354234663100 Q gi|254780314|r 324 VAF--NDNFVKKGVAIDKGVDLS 344 (351) Q Consensus 324 VqY--~D~~~~~~~~~d~g~d~t 344 (351) ..| .++ ++|++.+ T Consensus 254 y~ye~~~~--------~~~~~~~ 268 (286) T 2f1c_X 254 YAFEWQDH--------DEGDSDK 268 (286) T ss_dssp EEEEECC--------------CC T ss_pred EEEEEECC--------CCCCCCE T ss_conf 99999615--------7788735 No 13 >1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 Probab=58.68 E-value=4.3 Score=19.15 Aligned_cols=101 Identities=21% Similarity=0.371 Sum_probs=52.7 Q ss_pred CCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEE----EEEEE----------------C Q ss_conf 421222112000011125631202566666541013687765543334200014----89970----------------5 Q gi|254780314|r 36 NRARNRSAGKVGNVLPHITKVGGSLEKSLQARYHKLNGNNEFNSLAYDIPVKGN----LEVNA----------------N 95 (351) Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lng~~e~n~~~~d~~~~g~----~~~~a----------------~ 95 (351) ...|.|+|+ .|..|..|.....+++-+..--.||+| .+.-.||..- +-|+. - T Consensus 193 d~Rr~Raa~--~niIPt~Tgaakai~~vlP~L~gkl~g------~a~RVPt~~vS~vDl~~~~~~~~s~eein~~~~~aa 264 (332) T 1hdg_O 193 DLRRARAAA--VNIIPTTTGAAKAVALVVPEVKGKLDG------MAIRVPTPDGSITDLTVLVEKETTVEEVNAVMKEAT 264 (332) T ss_dssp STTTTSBGG--GCCEEECCTHHHHHHHHCGGGTTTEEE------EEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHH T ss_pred CCCCCCCHH--HCCCCCCCCHHHHHHHHCCCCCCCCCE------EEEECCCCCCCEEEEEEEECCCCCHHHHHHHHHHHH T ss_conf 765647154--264306775688899857054897332------798556776420689999756699999999999997 Q ss_pred CCCEEEEEEEEEECCCHHCCCCCCCCHHEEEEECCCCCCCHHHHEEEHHHEEECCEEEECC Q ss_conf 6861349999974220000001112100012103555511252000110000012220024 Q gi|254780314|r 96 AGDVTGVAKLKLAVDDVLSMQFAESDVRALAFTVPSSKLSVEELSLSMKGARLGYYKSWSD 156 (351) Q Consensus 96 ~g~~tgv~~~~~~~d~~~~~~~~~~d~~a~~~~~~Ss~l~ldeayLdi~GfRaG~FySWWD 156 (351) .|++-|+ +.+.-+...|..|..+..-++ +|.....+-+=+.-..+.|.| T Consensus 265 ~~~l~~i--l~~~~~~~VS~D~~~~~~S~i----------~D~~~t~v~~~~~~k~~~WyD 313 (332) T 1hdg_O 265 EGRLKGI--IGYNDEPIVSSDIIGTTFSGI----------FDATITNVIGGKLVKVASWYD 313 (332) T ss_dssp TTTTTTT--EEEECSCCCGGGGTTCCCSEE----------EETTTCEEETTTEEEEEEEEC T ss_pred HCCCCCE--EEEECCCCCCCCCCCCCCHHE----------EECCCCEEECCCEEEEEEEEC T ss_conf 4766887--889889712220089993016----------861002897898899999977 No 14 >1orm_A Outer membrane protein X; OMPX, trosy, DHPC, detergents, lipids, micelles; NMR {Escherichia coli} SCOP: f.4.1.1 PDB: 1q9f_A 1q9g_A 1qj8_A* 1qj9_A Probab=48.91 E-value=1.3 Score=22.30 Aligned_cols=60 Identities=22% Similarity=0.277 Sum_probs=39.1 Q ss_pred EEEEEEEEEEECEEEEECC--CEEEEC-CC-------CCCCCCEEEEEEEEEEEEECCCEEEEEEEECCC Q ss_conf 1366435563110478604--525404-56-------767852277877888885159127789873274 Q gi|254780314|r 270 YSVFAGYKFDVAKSITISG--GGQYFG-DI-------NKTGKDGWSAGISAKYMISSGLEAQASVAFNDN 329 (351) Q Consensus 270 WaVAAeYaikaTDKl~ITP--G~QY~g-d~-------~~sg~DaWk~GlTvDYqItegL~tK~SVqY~D~ 329 (351) +++++.+.+.++|++.+-. |+.|+. +. .......|..|+-++|.+++++..++.-+|.+- T Consensus 63 ~~l~~~~~~~~~~~~~~Y~~~G~a~~~~~~~~~~~~~~s~~~~~~~~G~Gvey~lt~n~~~~~eY~~~~~ 132 (148) T 1orm_A 63 YGITAGPAYRINDWASIYGVVGVGYGKFQTTEYPTYKNDTSDYGFSYGAGLQFNPMENVALDFSYEQSRI 132 (148) T ss_dssp CBCCBCCCCCCTTTCCCCCCEECBCCSCSCCSSSSCCCCCCCCCCEECCCCCCCCSSSCBCCCCCCCCCS T ss_pred EEEEEEEEEEECCCEEEEEEEEEEEEEEEECCCCCCCCCCCCCCEEEECEEEEEECCCEEEEEEEEEEEC T ss_conf 9998888998278575999988647887731255431135521155813089986588799999999707 No 15 >2q03_A Uncharacterized protein; YP_563039.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Shewanella denitrificans OS217} SCOP: b.159.2.1 Probab=46.20 E-value=13 Score=16.04 Aligned_cols=95 Identities=14% Similarity=0.021 Sum_probs=54.4 Q ss_pred EEECCCCCCCCCCEEEECCCCCCCCCCEEEEEEECCCEEEEEEHHHCCC----CCCCCEEE---EEEEEEEEECCEEEEE Q ss_conf 2002444455551023112224443322689982575451033032146----66654034---7889634541268999 Q gi|254780314|r 152 KSWSDEVNPVYSPTTLYNDARGLDKMMSLSYRHSFGLLKAGLSTDLLQK----DGLKQVLG---IGYMASYAIGKIRSTV 224 (351) Q Consensus 152 ySWWDEtddIgS~~TL~Nd~rg~dk~~SirYqYe~G~F~AGiSvDeLE~----dg~~n~VG---V~g~vsg~aGavS~ql 224 (351) -.=||| .|....++-+.+..+ ++.++|++. +. |-|.-|..- ++...-|| +.|.+.++.|-|.+|- T Consensus 17 V~~W~E-----~~~~~~~~g~~l~ra-~v~k~~sG~-le-G~s~~~~l~~y~~~g~A~yvg~E~~~G~l~Gr~GsFvlqh 88 (138) T 2q03_A 17 ITAWDE-----TSYFESDNGAKLTQA-VITQSYQGV-LQ-GHSEIRYLMSYQDNANATFVGFEHFTGSLGDKKGSFILQH 88 (138) T ss_dssp EEEEEE-----EEEEECTTSCEEEEE-EEEEEECSS-EE-EEEEEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEEEEE T ss_pred EECCCC-----CCCCCCCCCCEEEEE-EEEEEEEEE-EE-EEEEEEEEEEECCCCCEEEEEEEEEEEEECCEEEEEEEEE T ss_conf 816888-----665556898626999-999987647-88-9999999999848984789999999999999038899997 Q ss_pred EEEEECCCCCCEEEEEEEECCCCCCEEEEEEEEEC Q ss_conf 85221146651279888613678820246788733 Q gi|254780314|r 225 TGGYDAGTNNVAIRANISSPVSRAGTLDCGAVWAS 259 (351) Q Consensus 225 tGGyDtd~eeGAIRAl~ta~iG~PGTlglAgVwAS 259 (351) .|-+|.. ..+.-.++--| -||=.|+|+--+ T Consensus 89 ~Gt~~~g----~~~~~~~VVpg-SGTgeL~Gl~Gs 118 (138) T 2q03_A 89 KGLFAAG----VASSEFELVER-SATGDFVHLVGK 118 (138) T ss_dssp EEEEETT----EEEEEEEECTT-CCEETTTTEEEE T ss_pred EEEECCC----CEEEEEEEECC-CCCHHHCCCEEE T ss_conf 7588698----40267999868-877222674746 No 16 >1i78_A Protease VII; integral outer membrane protein, beta barrel, hydrolase; HET: BOG; 2.60A {Escherichia coli K12} SCOP: f.4.4.1 Probab=41.33 E-value=16 Score=15.58 Aligned_cols=159 Identities=19% Similarity=0.299 Sum_probs=85.5 Q ss_pred EEEECCCC-CCCCCCEEEECCCCCCCCCCEEEEEEECCCEEEEEEHHHCCCCCCCCEEEEEEEEEEEECCEEEEEEEEEE Q ss_conf 22002444-45555102311222444332268998257545103303214666654034788963454126899985221 Q gi|254780314|r 151 YKSWSDEV-NPVYSPTTLYNDARGLDKMMSLSYRHSFGLLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGGYD 229 (351) Q Consensus 151 FySWWDEt-ddIgS~~TL~Nd~rg~dk~~SirYqYe~G~F~AGiSvDeLE~dg~~n~VGV~g~vsg~aGavS~qltGGyD 229 (351) -|.|-|.. ...-+....|.+. .+.|-.+.+. .|.--.|+. ++.-++.++|++---++++-.||.- T Consensus 83 DyDW~~~~~~~~wt~~S~h~~t-------~l~~a~~~dL---n~~~w~l~~----~~ykig~~aGyqy~~~s~~A~GG~~ 148 (297) T 1i78_A 83 DQDWMDSSNPGTWTDEARHPDT-------QLNYANEFDL---NIKGWLLNE----PNYRLGLMAGYQESRYSFTARGGSY 148 (297) T ss_dssp EEECCCTTSTTSCSEEEEEEEE-------EEEEEEEEEE---EEEEEEEEC----SSEEEEEEEEEEEEEEEEEEECCEE T ss_pred ECCCCCCCCCCCCCCCCCCCCC-------CCCHHHHCCC---CCCEEEECC----CCCEEEEEEEEEEEEEEEEECCCCE T ss_conf 0574566789877332108998-------7004654053---332013238----8714524601377752389448515 Q ss_pred CCCCCCEEEE-EEEECCCCCCEEEEEEEEECCCCCCCCCCCEEEEEEEEEEECEEEEECCCEEEECCC------------ Q ss_conf 1466512798-886136788202467887338640001121136643556311047860452540456------------ Q gi|254780314|r 230 AGTNNVAIRA-NISSPVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQYFGDI------------ 296 (351) Q Consensus 230 td~eeGAIRA-l~ta~iG~PGTlglAgVwASgpNaYY~~SEWaVAAeYaikaTDKl~ITPG~QY~gd~------------ 296 (351) .-.++...|. .++.+.+ ..+| -|-- -|...-=-++.+|++ +++.|.-.++|-.-+ T Consensus 149 ~Y~~~~~~~~~~g~~p~~---~~~I--~Y~Q----~f~~pyiGL~g~yr~---~~~e~~~~lk~s~wv~a~d~D~H~lR~ 216 (297) T 1i78_A 149 IYSSEEGFRDDIGSFPNG---ERAI--GYKQ----RFKMPYIGLTGSYRY---EDFELGGTFKYSGWVESSDNDEHYDPK 216 (297) T ss_dssp EBCCTTCSSCBCCBCCTT---CSEE--EEEE----EEEEEEEEEEEEEEE---TTEEEEEEEEEEEEEEEEEEEEEECSS T ss_pred ECCCCCCCCCCCCCCCCC---CCCE--EEEE----EEEEEEEEEEEEEEE---CCEEEEEEEEECEEEECCCCCHHHHCC T ss_conf 658877654445667887---6414--6668----885536757789960---537985588525577557660154335 Q ss_pred -CC----C--CCCEEEEEEEEEEEEECCCEEEEEEEECCCCCCCCC Q ss_conf -76----7--852277877888885159127789873274211354 Q gi|254780314|r 297 -NK----T--GKDGWSAGISAKYMISSGLEAQASVAFNDNFVKKGV 335 (351) Q Consensus 297 -~~----s--g~DaWk~GlTvDYqItegL~tK~SVqY~D~~~~~~~ 335 (351) .. . +-.-|.+.+.+.|.|++++.-.++.-|.-.+.+||- T Consensus 217 ~~~~f~~~~~~~~y~~~~~~agY~vtp~~sl~~e~~y~~~~~~kG~ 262 (297) T 1i78_A 217 GRITYRSKVKDQNYYSVAVNAGYYVTPNAKVYVEGAWNRVTNKKGN 262 (297) T ss_dssp SCEEEEEEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEE T ss_pred CCCCCEECCCCCCEEEEEEEEEEEECCCEEEEEEEEEEEEECCCCC T ss_conf 8751003367876589999988986798799999999999823586 No 17 >1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3k2b_A* 2pkq_O* Probab=41.19 E-value=12 Score=16.30 Aligned_cols=44 Identities=30% Similarity=0.402 Sum_probs=25.5 Q ss_pred CCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEE Q ss_conf 4212221120000111256312025666665410136877655433342000 Q gi|254780314|r 36 NRARNRSAGKVGNVLPHITKVGGSLEKSLQARYHKLNGNNEFNSLAYDIPVK 87 (351) Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lng~~e~n~~~~d~~~~ 87 (351) ...|.|+| ..|..|..|...-++++-+..--.||+| .++-.||. T Consensus 195 d~Rr~Raa--~~niIPt~Tgaakai~~vlPeL~gkl~g------~a~RVPt~ 238 (337) T 1rm4_O 195 DLRRARAA--CLNIVPTSTGAAKAVALVLPNLKGKLNG------IALRVPTP 238 (337) T ss_dssp STTTTSCT--TTCCEEECCCHHHHHHHHCGGGTTTEEE------EEEEESCS T ss_pred CCCCCCHH--HCCCEECCCCHHHHHHHHHHHHCCCCCE------EEEECCCC T ss_conf 51113522--2462016753899998764876578755------89975777 No 18 >1p4t_A Outer membrane protein NSPA; beta barrel; HET: CXE; 2.55A {Neisseria meningitidis} SCOP: f.4.1.1 Probab=40.91 E-value=16 Score=15.54 Aligned_cols=28 Identities=14% Similarity=0.232 Sum_probs=25.5 Q ss_pred CEEEEEEEEEEEEECCCEEEEEEEECCC Q ss_conf 2277877888885159127789873274 Q gi|254780314|r 302 DGWSAGISAKYMISSGLEAQASVAFNDN 329 (351) Q Consensus 302 DaWk~GlTvDYqItegL~tK~SVqY~D~ 329 (351) -.|..|+-++|+|++++..++..+|.+- T Consensus 106 ~~~~~g~G~~y~~~~~~~~~~ey~y~~~ 133 (155) T 1p4t_A 106 IGLGVLTGVSYAVTPNVDLDAGYRYNYI 133 (155) T ss_dssp EEEEEEEEEEEEEETTEEEEEEEEEEEE T ss_pred EEEEEEEEEEEEECCCEEEEEEEEEEEC T ss_conf 6047511499971789999999999876 No 19 >2zfg_A Outer membrane protein F; OMPF porin, ordered waters, ION transport, phage recognition, transmembrane, transport; HET: C8E; 1.59A {Escherichia coli} SCOP: f.4.3.1 PDB: 1opf_A* 2omf_A* 2zld_A 3k19_A 3k1b_A 3hw9_A* 3hwb_A* 1hxx_A 3fyx_A* 1bt9_A 1mpf_A* 1gfq_A* 1gfp_A* 1gfm_A* 1gfo_A* 1hxu_A 1hxt_A* 1gfn_A* Probab=38.98 E-value=17 Score=15.35 Aligned_cols=235 Identities=12% Similarity=0.036 Sum_probs=109.7 Q ss_pred CCEEEEEEEEEECC--CHHCCCCCCCCHHEEEEECCCCCCCHHHHEEEH-----HHEEECCEEEECC----CCCCCCCC- Q ss_conf 86134999997422--000000111210001210355551125200011-----0000012220024----44455551- Q gi|254780314|r 97 GDVTGVAKLKLAVD--DVLSMQFAESDVRALAFTVPSSKLSVEELSLSM-----KGARLGYYKSWSD----EVNPVYSP- 164 (351) Q Consensus 97 g~~tgv~~~~~~~d--~~~~~~~~~~d~~a~~~~~~Ss~l~ldeayLdi-----~GfRaG~FySWWD----EtddIgS~- 164 (351) +.++.+.++.+..+ +--.. + ....+..+.+|+-| +-+|+|.-++=+. .+|+...- T Consensus 53 ~g~~~~~~~E~~~~~~~~~~~-----~--------~~~~~~~R~~~vGl~~~~~G~l~~Gr~~t~~~~~~~~~d~~~~~~ 119 (340) T 2zfg_A 53 SDLTGYGQWEYNFQGNNSEGA-----D--------AQTGNKTRLAFAGLKYADVGSFDYGRNYGVVYDALGYTDMLPEFG 119 (340) T ss_dssp SSEEEEEEEEEEEESSSCSST-----T--------TTTTCEEEEEEEEEEETTTEEEEEEEEECTTHHHHTTTCCCSSSC T ss_pred CCEEEEEEEEEEEECCCCCCC-----C--------CCCCCCCEEEEEEEECCCCEEEEEEEECCCCEEEEEECCCCCCCC T ss_conf 982999999988985788776-----7--------776643316899853288559998430671045531014431235 Q ss_pred --EEEECCCCCCCCCCEEEEEEEC-----CCEEEEEEHHHCCC---CCCCCEEEEEEEEEEEECCEEEEEEEEEECC--- Q ss_conf --0231122244433226899825-----75451033032146---6665403478896345412689998522114--- Q gi|254780314|r 165 --TTLYNDARGLDKMMSLSYRHSF-----GLLKAGLSTDLLQK---DGLKQVLGIGYMASYAIGKIRSTVTGGYDAG--- 231 (351) Q Consensus 165 --~TL~Nd~rg~dk~~SirYqYe~-----G~F~AGiSvDeLE~---dg~~n~VGV~g~vsg~aGavS~qltGGyDtd--- 231 (351) ....+......--..++|+... ..+...+....-.. ....+.-+....+.+..++++.-+ +|... T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~--~y~~~~~~ 197 (340) T 2zfg_A 120 GDTAYSDDFFVGRVGGVATYRNSNFFGLVDGLNFAVQYLGKNERDTARRSNGDGVGGSISYEYEGFGIVG--AYGAADRT 197 (340) T ss_dssp CTTCCTTSTTSSEEEEEEEEEESHHHHTSTTEEEEEEEECCBCCSSSTTCBCCEEEEEEEEEETTEEEEE--EEEEEECC T ss_pred CCCCCCCCCCCCCCCCEEEEECCEEEEEECCEEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCEEEEE--EEEEECCC T ss_conf 5432355533565455599831386420032379998730356766555566531322133258859999--99860366 Q ss_pred -----------CCCCEEEEEEEECCCCCCEEEEEEEEECCCCCCC-------------CCCCEEEEEEEEEEECEEEEEC Q ss_conf -----------6651279888613678820246788733864000-------------1121136643556311047860 Q gi|254780314|r 232 -----------TNNVAIRANISSPVSRAGTLDCGAVWASGDNSYY-------------DKSKYSVFAGYKFDVAKSITIS 287 (351) Q Consensus 232 -----------~eeGAIRAl~ta~iG~PGTlglAgVwASgpNaYY-------------~~SEWaVAAeYaikaTDKl~IT 287 (351) ....+++.-.....+ .+.+++.|....+.-. ....|.+.+.|++....++. T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~y~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~-- 272 (340) T 2zfg_A 198 NLQEAQPLGNGKKAEQWATGLKYDAN---NIYLAANYGETRNATPITNKFTNTSGFANKTQDVLLVAQYQFDFGLRPS-- 272 (340) T ss_dssp HHHHTSSBCCCSEEEEEEEEEEEEET---TEEEEEEEEEEESCSEEEETTTTEEEECSEEEEEEEEEEECCTTSEEEE-- T ss_pred CCCCCCCCCCCCCCEEEEEEEEEEEC---CEEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCEEEE-- T ss_conf 65433222366320045666678506---5268889887651134444335442111120348999999845753789-- Q ss_pred CCEEEECCCC----CCCCCEEEEEEEEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCCCCHHCCC Q ss_conf 4525404567----678522778778888851591277898732742113542346631001101139 Q gi|254780314|r 288 GGGQYFGDIN----KTGKDGWSAGISAKYMISSGLEAQASVAFNDNFVKKGVAIDKGVDLSVGLKKSF 351 (351) Q Consensus 288 PG~QY~gd~~----~sg~DaWk~GlTvDYqItegL~tK~SVqY~D~~~~~~~~~d~g~d~t~gl~~sf 351 (351) .+..|...-+ ....+.+...+-++|.+...+..-+..++.+---.....+++.+-..+||+-.| T Consensus 273 ~~y~~~~~~~~~~~~~~~~~~~~~~G~~Y~lsk~~~~y~~y~~~~~d~~~~~~~~~~~~~~vGlry~F 340 (340) T 2zfg_A 273 IAYTKSKAKDVEGIGDVDLVNYFEVGATYYFNKNMSTYVDYIINQIDSDNKLGVGSDDTVAVGIVYQF 340 (340) T ss_dssp EEEEEEEEEEETTTEEEEEEEEEEEEEEEEEETTEEEEEEEEEECCCTTCTTCCCCBCEEEEEEEEEC T ss_pred EEEEEEEECCCCCCCCCCCEEEEEEEEEEEECCCEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEC T ss_conf 99999960345677876524899999999916898999999998025777677777879999999989 No 20 >1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1 Probab=38.24 E-value=14 Score=15.97 Aligned_cols=44 Identities=25% Similarity=0.373 Sum_probs=24.4 Q ss_pred CCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEE Q ss_conf 4212221120000111256312025666665410136877655433342000 Q gi|254780314|r 36 NRARNRSAGKVGNVLPHITKVGGSLEKSLQARYHKLNGNNEFNSLAYDIPVK 87 (351) Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lng~~e~n~~~~d~~~~ 87 (351) ...|.|+|. .|..|+-|.....+++-+..--.||+| +++-.||- T Consensus 195 ~~Rr~Raa~--~nIIPttTgaakai~~vlP~L~gkl~g------~a~RVPt~ 238 (335) T 1u8f_O 195 LWRDGRGAL--QNIIPASTGAAKAVGKVIPELNGKLTG------MAFRVPTA 238 (335) T ss_dssp CGGGGSBTT--TCCEEEECCTTTTHHHHSGGGTTSEEE------EEEEESCS T ss_pred CCCCCCCCC--CCCCCCCCHHHHHHHHHCCCCCCCCCE------EEEECCCC T ss_conf 654564002--656333530888997638131785325------89974789 No 21 >3doc_A Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, structural genomics, PSI, protein structure initiative; HET: NAD; 2.40A {Brucella melitensis biovar ABORTUS2308} PDB: 3l0d_A* Probab=36.92 E-value=11 Score=16.65 Aligned_cols=44 Identities=25% Similarity=0.339 Sum_probs=25.3 Q ss_pred CCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEE Q ss_conf 4212221120000111256312025666665410136877655433342000 Q gi|254780314|r 36 NRARNRSAGKVGNVLPHITKVGGSLEKSLQARYHKLNGNNEFNSLAYDIPVK 87 (351) Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lng~~e~n~~~~d~~~~ 87 (351) ...|.|+|. -|..|.-|.....+++-+..--.||+| .+.-.||. T Consensus 195 d~Rr~Raa~--~niIPt~Tgaa~ai~~vlP~L~gkl~g------~a~RVPt~ 238 (335) T 3doc_A 195 DLYRARAAA--LSMIPTSTGAAKAVGLVLPELKGKLDG------VAIRVPTP 238 (335) T ss_dssp STTTTSCTT--SSCEEEECCHHHHHHHHSGGGTTCEEE------EEEEESCS T ss_pred CCCCCCCHH--HCCCCCCCCHHHHHHHHCCCCCCCEEE------EEEECCCC T ss_conf 877766165--321305764788887637300785127------99975888 No 22 >1obf_O Glyceraldehyde 3-phosphate dehydrogenase; glycolytic pathway, oxidoreductase, free-NAD GAPDH; HET: PG4; 1.7A {Achromobacter xylosoxidans} SCOP: c.2.1.3 d.81.1.1 PDB: 3gnq_A* Probab=34.94 E-value=15 Score=15.72 Aligned_cols=44 Identities=27% Similarity=0.434 Sum_probs=25.6 Q ss_pred CCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEE Q ss_conf 4212221120000111256312025666665410136877655433342000 Q gi|254780314|r 36 NRARNRSAGKVGNVLPHITKVGGSLEKSLQARYHKLNGNNEFNSLAYDIPVK 87 (351) Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lng~~e~n~~~~d~~~~ 87 (351) ...|.|+|. .|..|.-|-....+++-+.. |+| .++..++-.||- T Consensus 196 d~Rr~Raa~--~niIPtsTgaakai~~vlPe----L~g--kl~g~a~RVPt~ 239 (335) T 1obf_O 196 DLRRARSAT--MSMIPTKTGAAAAVGDVLPE----LDG--KLNGYAIRVPTI 239 (335) T ss_dssp STTTTSCTT--TCCEEEECCHHHHHHHHCGG----GTT--SEEEEEEEESCS T ss_pred CCCCCCCCC--CCCEECCCCHHHHHHHHCHH----HCC--CEEEEEEECCCC T ss_conf 732357553--43242563378899764542----188--633689974588 No 23 >1h4g_A Xylanase; glycoside hydrolase, oligosaccharide, transition-state, intermediate, mutant, BOAT conformation; HET: FXP; 1.1A {Bacillus agaradhaerens} SCOP: b.29.1.11 PDB: 1qh6_A* 1qh7_A* 1h4h_A* 2f6b_A 2nqy_A* 1igo_A Probab=30.61 E-value=23 Score=14.63 Aligned_cols=14 Identities=21% Similarity=0.335 Sum_probs=11.2 Q ss_pred HHEEECCEEEECCC Q ss_conf 00000122200244 Q gi|254780314|r 144 KGARLGYYKSWSDE 157 (351) Q Consensus 144 ~GfRaG~FySWWDE 157 (351) -|-.-||||+||.+ T Consensus 8 ~G~~~Gy~Y~~W~d 21 (207) T 1h4g_A 8 IGNHDGYDYEFWKD 21 (207) T ss_dssp EEEETTEEEEEEEC T ss_pred CEEECCEEEEEEEC T ss_conf 56369988788937 No 24 >1yna_A XYNA, endo-1,4-beta-xylanase; hydrolase; 1.55A {Thermomyces lanuginosus} SCOP: b.29.1.11 PDB: 1pvx_A Probab=29.36 E-value=23 Score=14.61 Aligned_cols=15 Identities=40% Similarity=0.753 Sum_probs=11.6 Q ss_pred HHEEECCEEEECCCC Q ss_conf 000001222002444 Q gi|254780314|r 144 KGARLGYYKSWSDEV 158 (351) Q Consensus 144 ~GfRaG~FySWWDEt 158 (351) -|..-||||+||.+. T Consensus 7 ~G~~~Gy~y~~W~d~ 21 (194) T 1yna_A 7 EGWHDGYYYSWWSDG 21 (194) T ss_dssp EEEETTEEEEEEECS T ss_pred CEEECCEEEEEEECC T ss_conf 062899899999779 No 25 >3dwn_A Long-chain fatty acid transport protein; beta barrel, outer membrane protein, lipid transport, membrane, outer membrane, phage recognition; HET: LDA; 2.50A {Escherichia coli} PDB: 1t16_A* 1t1l_A* 2r4p_A* 2r4n_A* 2r4l_A* 2r4o_A* 2r89_A 2r8a_A* 2r88_A Probab=28.66 E-value=26 Score=14.30 Aligned_cols=60 Identities=12% Similarity=0.208 Sum_probs=29.8 Q ss_pred EEEEEEEEEEECEEEEECCCEEEECCC--------CCCCCCEEEEEEEEEEEEECCCEEEEEEEECCC Q ss_conf 136643556311047860452540456--------767852277877888885159127789873274 Q gi|254780314|r 270 YSVFAGYKFDVAKSITISGGGQYFGDI--------NKTGKDGWSAGISAKYMISSGLEAQASVAFNDN 329 (351) Q Consensus 270 WaVAAeYaikaTDKl~ITPG~QY~gd~--------~~sg~DaWk~GlTvDYqItegL~tK~SVqY~D~ 329 (351) |.+...-.++.+++|++--|..|-.+- .....|.|..++=+-|++.+++.--++.+|... T Consensus 325 ~~~~~G~ey~~~~~l~lRaG~~y~~sp~~~~~~~~~~p~~~~~~~s~G~~~~~~~~~~id~~y~y~~~ 392 (427) T 3dwn_A 325 YRIALGTTYYYDDNWTFRTGIAFDDSPVPAQNRSISIPDQDRFWLSAGTTYAFNKDASVDVGVSYMHG 392 (427) T ss_dssp EEEEEEEEECCSSSEEEEEEEEEECCCCCGGGCCTTSCCCCEEEEEEEEEEESSSSEEEEEEEEEEEE T ss_pred EEEEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEEEEEEEEEC T ss_conf 89999999992898899999997667878665243245679889998898981898099999999985 No 26 >1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A* Probab=26.30 E-value=28 Score=14.04 Aligned_cols=44 Identities=27% Similarity=0.525 Sum_probs=26.1 Q ss_pred CCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEE Q ss_conf 4212221120000111256312025666665410136877655433342000 Q gi|254780314|r 36 NRARNRSAGKVGNVLPHITKVGGSLEKSLQARYHKLNGNNEFNSLAYDIPVK 87 (351) Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lng~~e~n~~~~d~~~~ 87 (351) ...|.|+|. .|..|..|.....+++-|.. |+| .+...++-.||. T Consensus 192 d~Rr~Raa~--~niIPt~Tgaakai~~vlP~----L~g--kl~g~a~RVPt~ 235 (330) T 1gad_O 192 DWRGGRGAS--QNIIPSSTGAAKAVGKVLPE----LNG--KLTGMAFRVPTP 235 (330) T ss_dssp CGGGGSBTT--TCCEEEECCTTTTHHHHSGG----GTT--SEEEEEEECSCS T ss_pred CCCCCCHHH--HCCCCCCCCHHHHHHHHHHH----HCC--CEEEEEEECCCC T ss_conf 544454244--16652566388899764797----579--633699981799 No 27 >2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A Probab=26.22 E-value=15 Score=15.69 Aligned_cols=101 Identities=21% Similarity=0.329 Sum_probs=53.4 Q ss_pred CCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEE--EEEEEE------------------C Q ss_conf 42122211200001112563120256666654101368776554333420001--489970------------------5 Q gi|254780314|r 36 NRARNRSAGKVGNVLPHITKVGGSLEKSLQARYHKLNGNNEFNSLAYDIPVKG--NLEVNA------------------N 95 (351) Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lng~~e~n~~~~d~~~~g--~~~~~a------------------~ 95 (351) ...|.|+|. -|..|.-|.....+++-+..--.||+| .+.-.||-. -+.++. - T Consensus 197 d~Rr~Rsa~--~NIIPtsTgAakai~~vlP~L~Gkl~g------~a~RVPt~nvS~iDlt~~l~k~~t~eein~~~~~aa 268 (380) T 2d2i_A 197 DLRRARAAA--VNIVPTTTGAAKAVALVIPELKGKLNG------IALRVPTPNVSVVDLVVQVEKPTITEQVNEVLQKAS 268 (380) T ss_dssp STTTTSCGG--GCCEEEECCHHHHHHHHCGGGTTTEEE------EEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHH T ss_pred CCCCCCCHH--CCCEECCCCHHHHHHHHCHHHCCCCEE------EEEECCCCCCEEEEEEEEECCCCCHHHHHHHHHHHH T ss_conf 765757132--061015654888997637300685016------899557886226999998324551899999999985 Q ss_pred CCCEEEEEEEEEECCCHHCCCCCCCCHHEEEEECCCCCCCHHHHEEEHHHEEECCEEEECC Q ss_conf 6861349999974220000001112100012103555511252000110000012220024 Q gi|254780314|r 96 AGDVTGVAKLKLAVDDVLSMQFAESDVRALAFTVPSSKLSVEELSLSMKGARLGYYKSWSD 156 (351) Q Consensus 96 ~g~~tgv~~~~~~~d~~~~~~~~~~d~~a~~~~~~Ss~l~ldeayLdi~GfRaG~FySWWD 156 (351) .+++-|+ |.+.-|...|..|-....-+| +|......-+-+.-...+|.| T Consensus 269 ~~~l~gi--l~~~~~~~VS~D~~~~~~S~i----------~D~~~t~v~~~~~~k~~~WYD 317 (380) T 2d2i_A 269 QTTMKGI--IKYSDLPLVSSDFRGTDESSI----------VDSSLTLVMDGDLVKVIAWYD 317 (380) T ss_dssp HTTTTTT--EEEECSCCCGGGGTTCCCSEE----------EEGGGCEEETTTEEEEEEEEC T ss_pred HCCCCCE--EEEECCCCCCCCCCCCCCHHE----------EECCCCEEECCCEEEEEEEEC T ss_conf 2777885--778788610412189993205----------852018897898899999988 No 28 >3bs0_A TODX; beta barrel, outer membrane protein, transport protein; HET: C8E; 2.60A {Pseudomonas putida} PDB: 3brz_A* Probab=25.78 E-value=29 Score=13.98 Aligned_cols=31 Identities=19% Similarity=0.272 Sum_probs=18.1 Q ss_pred CCEEEEEEEEEEEEECCCEEEEEEEECCCCC Q ss_conf 5227787788888515912778987327421 Q gi|254780314|r 301 KDGWSAGISAKYMISSGLEAQASVAFNDNFV 331 (351) Q Consensus 301 ~DaWk~GlTvDYqItegL~tK~SVqY~D~~~ 331 (351) +|+|+..+-+.|++.+.|.-|+..+|....+ T Consensus 331 ~d~~~~~~G~ey~~~~~l~lRaGy~y~~~~~ 361 (439) T 3bs0_A 331 QDITVASIGTAYKYNNDLTLRAGYSYAQQAL 361 (439) T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEECC--- T ss_pred CCEEEEEEEEEEEECCCEEEEEEEEECCCCC T ss_conf 3127999877899579889999999756777 No 29 >1te1_B GH11, endo-1,4-xylanase; beta/alpha barrel (XIP-I) and beta jelly roll (GH11), hydrolase inhibitor/hydrolase complex; HET: NAG; 2.50A {Penicillium funiculosum} SCOP: b.29.1.11 Probab=25.15 E-value=30 Score=13.90 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=14.2 Q ss_pred HHEEECCEEEECCCCCCCCCCEEEEC Q ss_conf 00000122200244445555102311 Q gi|254780314|r 144 KGARLGYYKSWSDEVNPVYSPTTLYN 169 (351) Q Consensus 144 ~GfRaG~FySWWDEtddIgS~~TL~N 169 (351) -|---||||+||.+. +..+++-| T Consensus 8 ~G~~~Gy~y~~W~d~---g~~~~~t~ 30 (190) T 1te1_B 8 TGTNNGYYYSFWTNG---GGEVTYTN 30 (190) T ss_dssp EEESSSCEEEEEECS---CSEEEEEE T ss_pred CEEECCEEEEEEECC---CCCEEEEE T ss_conf 341899899999779---98589993 No 30 >3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O* Probab=23.86 E-value=31 Score=13.75 Aligned_cols=44 Identities=27% Similarity=0.425 Sum_probs=26.7 Q ss_pred CCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEE Q ss_conf 4212221120000111256312025666665410136877655433342000 Q gi|254780314|r 36 NRARNRSAGKVGNVLPHITKVGGSLEKSLQARYHKLNGNNEFNSLAYDIPVK 87 (351) Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lng~~e~n~~~~d~~~~ 87 (351) +..|.|+| ..|..|.-|.....+++-+..--.||+| .++-.||. T Consensus 193 d~Rr~Raa--~~niIPtsTgaakai~~v~P~L~gkl~g------~a~RVPt~ 236 (334) T 3cmc_O 193 DLRRARAA--AESIIPTTTGAAKAVALVLPELKGKLNG------MAMRVPTP 236 (334) T ss_dssp STTTTSBT--TTCCEEEECSHHHHHHHHCGGGTTTEEE------EEEEESCS T ss_pred CCCCCCHH--HCCCCCCCCCHHHHHHHHCCCCCCCEEE------EEEECCCC T ss_conf 76675704--3176417775888887537222885337------99976788 No 31 >3h9e_A Glyceraldehyde-3-phosphate dehydrogenase, testis- specific; oxidoreductase, structural genomics, structural genomics consortium, SGC, cytoplasm; HET: NAD; 1.72A {Homo sapiens} PDB: 2vyn_D* 2vyv_D* Probab=23.01 E-value=27 Score=14.15 Aligned_cols=42 Identities=26% Similarity=0.449 Sum_probs=26.8 Q ss_pred CCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEE Q ss_conf 12221120000111256312025666665410136877655433342000 Q gi|254780314|r 38 ARNRSAGKVGNVLPHITKVGGSLEKSLQARYHKLNGNNEFNSLAYDIPVK 87 (351) Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lng~~e~n~~~~d~~~~ 87 (351) .|.|+|. .|..|..|.....+++-+..--.||+| .++-.||. T Consensus 201 Rr~Raa~--~niIPttTgaakai~~vlP~L~Gkl~g------~a~RVPt~ 242 (346) T 3h9e_A 201 RDGRGAH--QNIIPASTGAAKAVTKVIPELKGKLTG------MAFRVPTP 242 (346) T ss_dssp GGGSBTT--TCCEEECCHHHHHHHHHSGGGTTTEEE------EEEEESCS T ss_pred CCCCCCC--CCEEEECCCHHHHHHHHHHHHCCCCCE------EEEECCCC T ss_conf 6665542--422440560888999988875578633------78734778 No 32 >2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis, oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A {Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O* 1vc2_A* Probab=22.09 E-value=34 Score=13.54 Aligned_cols=44 Identities=27% Similarity=0.474 Sum_probs=23.5 Q ss_pred CCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEE Q ss_conf 4212221120000111256312025666665410136877655433342000 Q gi|254780314|r 36 NRARNRSAGKVGNVLPHITKVGGSLEKSLQARYHKLNGNNEFNSLAYDIPVK 87 (351) Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lng~~e~n~~~~d~~~~ 87 (351) ...|.|+|. .|..|..|.....+++-+. .|+| .+...++-.||. T Consensus 191 d~Rr~Raa~--~nIIPtsTgAakai~~vlP----~L~G--kl~g~a~RVPt~ 234 (331) T 2g82_O 191 DLRRARAAA--INIIPTTTGAAKATALVLP----SLKG--RFDGMALRVPTA 234 (331) T ss_dssp STTTTSBGG--GCCEEECCCHHHHHTTTCG----GGTT--SEEEEEEEESCS T ss_pred CCCCCCHHH--CCCCCCCCCCCCCCCCCCH----HHCC--CCCEEEEECCCC T ss_conf 644325455--0566666762101021455----2279--751368964788 No 33 >2vok_A 52 kDa RO protein; polymorphism, immune system, metal-binding, tripartite motif (TRIM) protein, SPRY systemic lupus erythematosus, zinc, B30.2; 1.30A {Mus musculus} PDB: 2vol_B* 2iwg_B* Probab=21.02 E-value=36 Score=13.40 Aligned_cols=21 Identities=14% Similarity=0.248 Sum_probs=9.0 Q ss_pred CCEEEEEEEEECCCCCCCCCC Q ss_conf 820246788733864000112 Q gi|254780314|r 248 AGTLDCGAVWASGDNSYYDKS 268 (351) Q Consensus 248 PGTlglAgVwASgpNaYY~~S 268 (351) |..+|+--=|..|--++|+.+ T Consensus 125 ~~rIGV~LDye~G~lSFynv~ 145 (188) T 2vok_A 125 PCQIGIFVDYEAGVVSFYNIT 145 (188) T ss_dssp CSEEEEEEETTTTEEEEEETT T ss_pred CCEEEEEEECCCCEEEEEECC T ss_conf 888999977379989999477 No 34 >2b4r_O Glyceraldehyde-3-phosphate dehydrogenase; SGPP, structural genomics, PSI, protein structure initiative, GAPDH, oxidoreductase; HET: NAD AES; 2.25A {Plasmodium falciparum} SCOP: c.2.1.3 d.81.1.1 PDB: 2b4t_O* 1ywg_O* Probab=20.89 E-value=36 Score=13.38 Aligned_cols=42 Identities=29% Similarity=0.536 Sum_probs=20.2 Q ss_pred CCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEE Q ss_conf 12221120000111256312025666665410136877655433342000 Q gi|254780314|r 38 ARNRSAGKVGNVLPHITKVGGSLEKSLQARYHKLNGNNEFNSLAYDIPVK 87 (351) Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lng~~e~n~~~~d~~~~ 87 (351) .|.|+|. -|..|.-|-....+++-|. .|+| .....++-.||. T Consensus 208 Rr~Raa~--~nIIPtsTgaakai~~vlP----~L~g--kl~g~a~RVPt~ 249 (345) T 2b4r_O 208 RAGRCAL--SNIIPASTGAAKAVGKVLP----ELNG--KLTGVAFRVPIG 249 (345) T ss_dssp GGGSCTT--TCCEEEECCHHHHHHHHSG----GGTT--TEEEEEEECSCS T ss_pred CCCCHHH--CCCCCCCCCHHHHHHHHCC----CCCC--CCCCEEEECCCC T ss_conf 1221033--1755466518899976383----0078--625358855778 No 35 >3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O Probab=20.82 E-value=11 Score=16.51 Aligned_cols=43 Identities=26% Similarity=0.431 Sum_probs=24.4 Q ss_pred CCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCEE Q ss_conf 421222112000011125631202566666541013687765543334200 Q gi|254780314|r 36 NRARNRSAGKVGNVLPHITKVGGSLEKSLQARYHKLNGNNEFNSLAYDIPV 86 (351) Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lng~~e~n~~~~d~~~ 86 (351) ...|.|+|+ -|..|.-|.....+++-|..---||+| .++-.|| T Consensus 197 d~Rr~Raa~--~niIPt~Tgaakai~~vlPeL~gkl~g------~a~RVPt 239 (337) T 3e5r_O 197 DWRGGRAAS--FNIIPSSTGAAKAVGKVLPDLNGKLTG------MSFRVPT 239 (337) T ss_dssp CSGGGSBGG--GSCEEEECCHHHHHHHHSGGGTTTEEE------EEEEESC T ss_pred CCCCCCCCC--CCCCCCCCHHHHHHHHHCCCCCCCCCE------EEEECCC T ss_conf 544553210--375405740888997637220785205------8996478 No 36 >3ids_C GAPDH, glyceraldehyde-3-phosphate dehydrogenase, glycosomal; irreversible inhibitor, protein-ligand complex,X-RAY, glycolysis, NAD; HET: NAD; 1.80A {Trypanosoma cruzi} PDB: 1ml3_A* 1qxs_C* 3dmt_A* 1k3t_A* 2x0n_A* 1gga_O* 1i32_A* 1a7k_A* 1i33_A* 1gyp_A* 1gyq_A* Probab=20.35 E-value=37 Score=13.31 Aligned_cols=43 Identities=21% Similarity=0.414 Sum_probs=22.3 Q ss_pred CCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEE Q ss_conf 212221120000111256312025666665410136877655433342000 Q gi|254780314|r 37 RARNRSAGKVGNVLPHITKVGGSLEKSLQARYHKLNGNNEFNSLAYDIPVK 87 (351) Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lng~~e~n~~~~d~~~~ 87 (351) ..|.|+|. -|..|.-|...-.+++-+..--.||.| .++-.||. T Consensus 211 ~Rr~Raa~--~nIIPtsTgaakai~~vlP~L~gkl~g------~a~RVPt~ 253 (359) T 3ids_C 211 WRGGRAAA--VNIIPSTTGAAKAVGMVIPSTQGKLTG------MSFRVPTP 253 (359) T ss_dssp TGGGSBGG--GCCEEEECSHHHHHHHHSGGGTTSEEE------EEEEESCS T ss_pred CCCCCCHH--HCCCCCCCCHHHHHHHHHHHHCCCEEE------EEEEEECC T ss_conf 66656232--065325663899999998860797666------77765126 No 37 >3fhh_A Outer membrane heme receptor SHUA; membrane protein, transporter, TONB-dependent transporter, TONB box; HET: BOG; 2.60A {Shigella dysenteriae} Probab=20.26 E-value=37 Score=13.30 Aligned_cols=57 Identities=21% Similarity=0.211 Sum_probs=34.9 Q ss_pred CEEEEEEEEEEECE-EEEECCCEEEEC------CCCCCCCCEEEEEEEEEEEEECCCEEEEEEE Q ss_conf 11366435563110-478604525404------5676785227787788888515912778987 Q gi|254780314|r 269 KYSVFAGYKFDVAK-SITISGGGQYFG------DINKTGKDGWSAGISAKYMISSGLEAQASVA 325 (351) Q Consensus 269 EWaVAAeYaikaTD-Kl~ITPG~QY~g------d~~~sg~DaWk~GlTvDYqItegL~tK~SVq 325 (351) .+++.++..++..+ ++.+++|+.|-. .......+.|..-+.+.|++.+.+..+++.. T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~g~R~d~~~~~~~~~~~~~~~~~~p~~~~~y~~~~~~~l~~~~~ 411 (640) T 3fhh_A 348 FSSGWLQDEITLRDLPITLLGGTRYDSYRGSSDGYKDVDADKWSSRAGMTINPTNWLMLFGSYA 411 (640) T ss_dssp EEEEEEEEEEEESSSSEEEEEEEEEEEEEEEESSSCCEEEEEEEEEEEEEECSSSSEEEEEEEE T ss_pred EEEEEEEEEHHCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEE T ss_conf 9774524001156652576313555664043200011232111112110332672113244476 Done!