HHSEARCH alignment of GI: 254780314 and SCOP domain: d2zfga1

Alignment
>d2zfga1 f.4.3.1 (A:1-340) Porin {Escherichia coli, different sequences [TaxId: 562]}
Probab=90.71  E-value=0.47  Score=23.65  Aligned_cols=245  Identities=15%  Similarity=0.103  Sum_probs=117.9

Q ss_pred             CEEEEEEEEEECCCCEEEEEEEEEECCCHHCCCCCCCCHHEEEEECCCCCCCHHHHEEEHH-----HEEECCEEEECC--
Q ss_conf             2000148997056861349999974220000001112100012103555511252000110-----000012220024--
Q gi|254780314|r   84 IPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVRALAFTVPSSKLSVEELSLSMK-----GARLGYYKSWSD--  156 (351)
Q Consensus        84 ~~~~g~~~~~a~~g~~tgv~~~~~~~d~~~~~~~~~~d~~a~~~~~~Ss~l~ldeayLdi~-----GfRaG~FySWWD--  156 (351)
                      +-+||.-++.   +.++...++.+.++--  .    ++     ..-....+..+++|+-|.     -+|+|--++-+.  
T Consensus        43 iG~~g~~~l~---~gl~a~~~~E~~~~~~--~----~~-----~~~~~~~~~~R~~yvGl~~~~~G~v~~Gr~~~~~~~~  108 (340)
T d2zfga1          43 LGFKGETQIN---SDLTGYGQWEYNFQGN--N----SE-----GADAQTGNKTRLAFAGLKYADVGSFDYGRNYGVVYDA  108 (340)
T ss_dssp             EEEEEEEECS---SSEEEEEEEEEEEESS--S----CS-----STTTTTTCEEEEEEEEEEETTTEEEEEEEEECTTHHH
T ss_pred             EEEEEEEECC---CCEEEEEEEEEEEECC--C----CC-----CCCCCCCCCCEEEEEEEECCCCEEEEEECCCCHHHHH
T ss_conf             9999999888---9839999999779868--8----87-----6777766432269997643885389985236578642


Q ss_pred             --CCCCC---CCCEEEECCCCCCCCCCEEEEEEEC-----CCEEEEEE--HHHCCC-CCCCCEEEEEEEEEEEECCEEEE
Q ss_conf             --44455---5510231122244433226899825-----75451033--032146-66654034788963454126899
Q gi|254780314|r  157 --EVNPV---YSPTTLYNDARGLDKMMSLSYRHSF-----GLLKAGLS--TDLLQK-DGLKQVLGIGYMASYAIGKIRST  223 (351)
Q Consensus       157 --EtddI---gS~~TL~Nd~rg~dk~~SirYqYe~-----G~F~AGiS--vDeLE~-dg~~n~VGV~g~vsg~aGavS~q  223 (351)
                        -+|++   ++........-....-.+++|....     ..++.++.  ...-.. ....+..+.+..+++..+++.  
T Consensus       109 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~--  186 (340)
T d2zfga1         109 LGYTDMLPEFGGDTAYSDDFFVGRVGGVATYRNSNFFGLVDGLNFAVQYLGKNERDTARRSNGDGVGGSISYEYEGFG--  186 (340)
T ss_dssp             HTTTCCCSSSCCTTCCTTSTTSSEEEEEEEEEESHHHHTSTTEEEEEEEECCBCCSSSTTCBCCEEEEEEEEEETTEE--
T ss_pred             HCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCEECCCEEEEEEEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCE--
T ss_conf             112453101366532235434566565289703334130322899999702466665445557402100122578826--


Q ss_pred             EEEEEECCC--------------CCCEEEEEEEECCCCCCEEEEEEEEECCCCCC-------------CCCCCEEEEEEE
Q ss_conf             985221146--------------65127988861367882024678873386400-------------011211366435
Q gi|254780314|r  224 VTGGYDAGT--------------NNVAIRANISSPVSRAGTLDCGAVWASGDNSY-------------YDKSKYSVFAGY  276 (351)
Q Consensus       224 ltGGyDtd~--------------eeGAIRAl~ta~iG~PGTlglAgVwASgpNaY-------------Y~~SEWaVAAeY  276 (351)
                      +.+.|....              ..-+++  +.+... .+.+.+++.|....+..             .....|.+.|.|
T Consensus       187 ~~~~y~~~~~~~~~~~~~~~~~~~~~~~~--~~~~y~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~Y  263 (340)
T d2zfga1         187 IVGAYGAADRTNLQEAQPLGNGKKAEQWA--TGLKYD-ANNIYLAANYGETRNATPITNKFTNTSGFANKTQDVLLVAQY  263 (340)
T ss_dssp             EEEEEEEEECCHHHHTSSBCCCSEEEEEE--EEEEEE-ETTEEEEEEEEEEESCSEEEETTTTEEEECSEEEEEEEEEEE
T ss_pred             EEEEEEEEECCCCCCCCCCCCCCCEEEEE--EEEEEE-ECCEEEEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEEEE
T ss_conf             77777753046653333335664112576--424897-112899999988850344222345665542036789999999


Q ss_pred             EEEECEEEEECCCEEEECCCC--CCC--CCEEEEEEEEEEEEECCCEEEEEEEE--CCCCCCCCCCCCCCCCCCCCHHCC
Q ss_conf             563110478604525404567--678--52277877888885159127789873--274211354234663100110113
Q gi|254780314|r  277 KFDVAKSITISGGGQYFGDIN--KTG--KDGWSAGISAKYMISSGLEAQASVAF--NDNFVKKGVAIDKGVDLSVGLKKS  350 (351)
Q Consensus       277 aikaTDKl~ITPG~QY~gd~~--~sg--~DaWk~GlTvDYqItegL~tK~SVqY--~D~~~~~~~~~d~g~d~t~gl~~s  350 (351)
                      .+.  ..+++..+.+|.-.-+  ..+  .......+-++|++...+..-++-.+  .|. - +....++-+-.++||.-.
T Consensus       264 ~~~--~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~vG~~Y~lsk~~~~y~~Y~~~~~d~-~-~~~~~~~~~~~~~G~ry~  339 (340)
T d2zfga1         264 QFD--FGLRPSIAYTKSKAKDVEGIGDVDLVNYFEVGATYYFNKNMSTYVDYIINQIDS-D-NKLGVGSDDTVAVGIVYQ  339 (340)
T ss_dssp             CCT--TSEEEEEEEEEEEEEEETTTEEEEEEEEEEEEEEEEEETTEEEEEEEEEECCCT-T-CTTCCCCBCEEEEEEEEE
T ss_pred             EEC--CCEEEEEEEEEEECCCCCCCCCCCCEEEEEEEEEEEECCCEEEEEEEEEECCCC-C-CCCCCCCCCEEEEEEEEE
T ss_conf             726--765899999999503566777766348999999999469989999999982257-7-667776787999999998


Q ss_pred             C
Q ss_conf             9
Q gi|254780314|r  351 F  351 (351)
Q Consensus       351 f  351 (351)
                      |
T Consensus       340 F  340 (340)
T d2zfga1         340 F  340 (340)
T ss_dssp             C
T ss_pred             C
T ss_conf             9


SCOP domain information

class: Membrane and cell surface proteins and peptides
fold: Transmembrane beta-barrels
superfamily: Porins
family: Porin
domain: Porin
species: Escherichia coli, different sequences [TaxId: 562]