HHSEARCH alignment of GI: 254780314 and SCOP domain: d3prna_

Alignment
>d3prna_ f.4.3.1 (A:) Porin {Rhodopseudomonas blastica, strain DSM2131 [TaxId: 1075]}
Probab=97.94  E-value=0.00066  Score=41.38  Aligned_cols=153  Identities=13%  Similarity=0.074  Sum_probs=96.7

Q ss_pred             CEEEEEEECCCEEEEEEHHHCCCCCC--CCEEEEEEEEEEEECCEEEEEEEEEECCCC----CCEEEEEEEECCCCCCEE
Q ss_conf             22689982575451033032146666--540347889634541268999852211466----512798886136788202
Q gi|254780314|r  178 MSLSYRHSFGLLKAGLSTDLLQKDGL--KQVLGIGYMASYAIGKIRSTVTGGYDAGTN----NVAIRANISSPVSRAGTL  251 (351)
Q Consensus       178 ~SirYqYe~G~F~AGiSvDeLE~dg~--~n~VGV~g~vsg~aGavS~qltGGyDtd~e----eGAIRAl~ta~iG~PGTl  251 (351)
                      ..+.|.++.+.|+++++.-.=+.+..  .+..+....+.++.+++..  -..|+....    .-+.........   +.+
T Consensus       131 ~i~y~sp~~~Gf~~~~~y~~~~~~~~~~~~~~~~~~~~~y~~~~~~~--~~~y~~~~~~~~~~~~~~~~~~~~~---~~~  205 (289)
T d3prna_         131 NGIAVTYSISGVNLYLSYVDPDQTVDSSLVTEEFGIAADWSNDMISL--AAAYTTDAGGIVDNDIAFVGAAYKF---NDA  205 (289)
T ss_dssp             EEEEEEEECSSEEEEEEEEETTTTSCGGGSCCEEEEEEEEECSSEEE--EEEEEESGGGCTTCCEEEEEEEECC---SSS
T ss_pred             CEEEECCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCEE--EEEEEECCCCCCCCCCCEEEEEEEE---CCE
T ss_conf             27996611277989988842677665666663268998804786134--6656410477654432101014540---551


Q ss_pred             EEEEEEECCCCCCCCCCCEEEEEEEEEEECEEEEECCCEEEECCCCCCCCCEEEEEEEEEEEEECCCEEEEEEEECCCCC
Q ss_conf             46788733864000112113664355631104786045254045676785227787788888515912778987327421
Q gi|254780314|r  252 DCGAVWASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQYFGDINKTGKDGWSAGISAKYMISSGLEAQASVAFNDNFV  331 (351)
Q Consensus       252 glAgVwASgpNaYY~~SEWaVAAeYaikaTDKl~ITPG~QY~gd~~~sg~DaWk~GlTvDYqItegL~tK~SVqY~D~~~  331 (351)
                      .+.+.+....+.--+...|.+.+.|.+.+     .+..++|...-...  +.-..+|.++|+++.++..-+.+++.+.  
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~y~~g~-----~~~~~~y~~~~~~~--~~~~~~lg~~Y~ls~~~~l~a~~~~~~~--  276 (289)
T d3prna_         206 GTVGLNWYDNGLSTAGDQVTLYGNYAFGA-----TTVRAYVSDIDRAG--ADTAYGIGADYQFAEGVKVSGSVQSGFA--  276 (289)
T ss_dssp             EEEEEEEEECTTSTTCSEEEEEEEEEETT-----EEEEEEEEEECSTT--CCCEEEEEEEEEEETTEEEEEEEEECTT--
T ss_pred             EEEEEEEEEECCCCCCEEEEEEEEEEECC-----EEEEEEEEECCCCC--CCCEEEEEEEEECCCCEEEEEEEEEEEC--
T ss_conf             68888888603676413799999998388-----89999996157787--6418999999984998499999999808--


Q ss_pred             CCCCCCCCCCCCCCCHHCCC
Q ss_conf             13542346631001101139
Q gi|254780314|r  332 KKGVAIDKGVDLSVGLKKSF  351 (351)
Q Consensus       332 ~~~~~~d~g~d~t~gl~~sf  351 (351)
                            ++ ...++|++-+|
T Consensus       277 ------~~-~~a~~Gv~~~F  289 (289)
T d3prna_         277 ------NE-TVADVGVRFDF  289 (289)
T ss_dssp             ------CC-EEEEEEEEEEC
T ss_pred             ------CC-CEEEEEEEEEC
T ss_conf             ------98-25725657769


SCOP domain information

class: Membrane and cell surface proteins and peptides
fold: Transmembrane beta-barrels
superfamily: Porins
family: Porin
domain: Porin
species: Rhodopseudomonas blastica, strain DSM2131 [TaxId: 1075]