RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780314|ref|YP_003064727.1| outer membrane protein
[Candidatus Liberibacter asiaticus str. psy62]
         (351 letters)



>gnl|CDD|152187 pfam11751, DUF3308, Protein of unknown function (DUF3308).  Some
           members of this family of bacterial proteins are
           annotated as being one of the several TonB-dependent
           siderophore receptors, but this could not be confirmed.
          Length = 274

 Score = 29.9 bits (68), Expect = 1.2
 Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 4/73 (5%)

Query: 259 SGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQYFGDINKTGKDGWSAGISAKYMISSGL 318
           + ++       Y + AGY FD+ + + +     Y            S  ++A  + +   
Sbjct: 168 NDNSESSLPRHYYLTAGYVFDLNEELKLKPSVLY----KYQEGAPLSLDLNANLLYNDKF 223

Query: 319 EAQASVAFNDNFV 331
              AS   ND   
Sbjct: 224 WLGASYRNNDAIS 236


>gnl|CDD|178719 PLN03175, PLN03175, hypothetical protein; Provisional.
          Length = 415

 Score = 26.7 bits (59), Expect = 9.0
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 7/41 (17%)

Query: 53  ITKVGGSLEKSLQARYHKLNGNNEFNSL-------AYDIPV 86
           I  V  + EKSL+ R  K+N N ++N L         DIP+
Sbjct: 309 INTVRDAFEKSLRNRLQKMNPNTDYNCLKTFGSFFTEDIPI 349


>gnl|CDD|162685 TIGR02073, PBP_1c, penicillin-binding protein 1C.  This subfamily
           of the penicillin binding proteins includes the member
           from E. coli designated penicillin-binding protein 1C.
           Members have both transglycosylase and transpeptidase
           domains and are involved in forming cross-links in the
           late stages of peptidoglycan biosynthesis. All members
           of this subfamily are presumed to have the same basic
           function.
          Length = 727

 Score = 26.6 bits (59), Expect = 9.7
 Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 5/22 (22%)

Query: 298 KTG-----KDGWSAGISAKYMI 314
           KTG     +D W+AG+S +Y I
Sbjct: 490 KTGTSYGFRDAWAAGVSGRYTI 511


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.314    0.131    0.369 

Gapped
Lambda     K      H
   0.267   0.0748    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,494,832
Number of extensions: 344161
Number of successful extensions: 372
Number of sequences better than 10.0: 1
Number of HSP's gapped: 372
Number of HSP's successfully gapped: 5
Length of query: 351
Length of database: 5,994,473
Length adjustment: 94
Effective length of query: 257
Effective length of database: 3,963,321
Effective search space: 1018573497
Effective search space used: 1018573497
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.1 bits)