RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780314|ref|YP_003064727.1| outer membrane protein
[Candidatus Liberibacter asiaticus str. psy62]
         (351 letters)



>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 31.5 bits (70), Expect = 0.25
 Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 14/35 (40%)

Query: 103 AKLKLAVDDVLSMQFAESDVRALAFTVPSSKLSVE 137
           A LKL  DD  S   A     ALA      K ++E
Sbjct: 27  ASLKLYADD--S---AP----ALAI-----KATME 47



 Score = 27.3 bits (59), Expect = 4.9
 Identities = 8/36 (22%), Positives = 18/36 (50%), Gaps = 9/36 (25%)

Query: 133 KLSVEELSLSMKGARLGYYKSWSDEVNPVYS-PTTL 167
           K ++++L  S+K   L     ++D+  P  +   T+
Sbjct: 19  KQALKKLQASLK---L-----YADDSAPALAIKATM 46


>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT,
           histidine biosynthesis, hiszg, allosteric, evolution;
           2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
          Length = 344

 Score = 28.5 bits (62), Expect = 2.1
 Identities = 11/63 (17%), Positives = 21/63 (33%), Gaps = 12/63 (19%)

Query: 263 SYYDKSKYSVFAGYKFDVAKSITISGGGQYFGDINKTGKD----GWSAGISAKYMISSGL 318
            YY    +  ++           I  GG+Y   ++   ++    G+   +     I   L
Sbjct: 283 DYYTDLMFKAYSSAANQ-----PILSGGRYDQLLSNFQEEAFAIGFCCHMDT---ILKAL 334

Query: 319 EAQ 321
           E Q
Sbjct: 335 ERQ 337


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl reductase,
            beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
            cerevisiae}
          Length = 2006

 Score = 28.4 bits (63), Expect = 2.3
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 13/57 (22%)

Query: 256  VWASGDNSYYDKSKYSVFAGYKFDVA----KSITISGGGQYFGDINKTGKDGWSAGI 308
            VW   DN + D   +S+      D+      ++TI  GG+      K  ++ +SA I
Sbjct: 1645 VWNRADNHFKDTYGFSI-----LDIVINNPVNLTIHFGGEK----GKRIRENYSAMI 1692


>2por_A Porin; HET: C8E; 1.80A {Rhodobacter capsulatus} SCOP: f.4.3.1 PDB:
           3por_A*
          Length = 301

 Score = 27.6 bits (60), Expect = 4.4
 Identities = 17/107 (15%), Positives = 24/107 (22%), Gaps = 5/107 (4%)

Query: 223 TVTGGYDAGTNNVAIRANISSPVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYKFDVAK 282
            +      G  NV                       +   +  D   Y +     F    
Sbjct: 185 ELAAIAKFGATNVKAYYADGELDRDFARAVFDLTPVAAAATAVDHKAYGLSVDSTFGATT 244

Query: 283 SITISGGGQYFGDINKTGKDGWSAGISAKYMISSGLEAQASVAFNDN 329
                 GG        T  D    G+ A Y +  G      +A ND 
Sbjct: 245 V-----GGYVQVLDIDTIDDVTYYGLGASYDLGGGASIVGGIADNDL 286


>1pho_A Phosphoporin; outer membrane protein; 3.00A {Escherichia coli}
           SCOP: f.4.3.1
          Length = 330

 Score = 26.7 bits (58), Expect = 7.4
 Identities = 20/162 (12%), Positives = 44/162 (27%), Gaps = 2/162 (1%)

Query: 192 GLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGGYDAGTNNVAIRANISSPVSRAGTL 251
           G S           + G    +     +   +   G  A      ++ + ++        
Sbjct: 169 GTSLTYDFGGSDFAISGAYTNSDRTNEQNLQSRGTGKRAEAWATGLKYDANNIYLATFYS 228

Query: 252 DCGAVWASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQYFGDINKTGKDG--WSAGIS 309
           +   +             +   A Y+FD     ++        DI   G +       + 
Sbjct: 229 ETRKMTPITGGFANKTQNFEAVAQYQFDFGLRPSLGYVLSKGKDIEGIGDEDLVNYIDVG 288

Query: 310 AKYMISSGLEAQASVAFNDNFVKKGVAIDKGVDLSVGLKKSF 351
           A Y  +  + A      N       + I+    ++VG+   F
Sbjct: 289 ATYYFNKNMSAFVDYKINQLDSDNKLNINNDDIVAVGMTYQF 330


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.314    0.131    0.369 

Gapped
Lambda     K      H
   0.267   0.0478    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,822,652
Number of extensions: 124909
Number of successful extensions: 216
Number of sequences better than 10.0: 1
Number of HSP's gapped: 215
Number of HSP's successfully gapped: 17
Length of query: 351
Length of database: 5,693,230
Length adjustment: 93
Effective length of query: 258
Effective length of database: 3,438,538
Effective search space: 887142804
Effective search space used: 887142804
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.3 bits)