Query gi|254780315|ref|YP_003064728.1| hypothetical protein CLIBASIA_01000 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 45
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Wed Jun 1 11:59:23 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780315.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2job_A Antilipopolysaccharide 16.7 49 0.0014 16.1 0.8 15 31-45 38-52 (102)
2 >3css_A 6-phosphogluconolacton 9.5 1.7E+02 0.0049 13.5 2.8 40 4-43 40-79 (267)
3 >3g4n_A Aerolysin; toxin, cyto 7.5 1.3E+02 0.004 14.0 0.6 11 24-34 5-15 (84)
4 >2vqz_A Polymerase basic prote 6.1 1.5E+02 0.0044 13.8 0.2 18 15-32 113-130 (166)
5 >1wy9_A Allograft inflammatory 5.7 60 0.0018 15.7 -2.0 14 28-41 47-60 (104)
6 >1xks_A Nuclear pore complex p 4.9 45 0.0013 16.3 -3.1 12 9-20 47-58 (132)
7 >1qmy_A Protease, leader prote 4.3 3.3E+02 0.0098 12.1 1.3 24 5-28 64-87 (167)
8 >3bs1_A Accessory gene regulat 4.1 2.8E+02 0.0082 12.4 0.5 10 25-34 7-16 (29)
9 >2i7r_A Conserved domain prote 3.9 97 0.0029 14.7 -2.0 6 11-16 44-49 (59)
10 >1mda_H Methylamine dehydrogen 3.2 45 0.0013 16.3 -4.2 8 12-19 14-21 (46)
No 1
>>2job_A Antilipopolysaccharide factor; ALF, lipid A binding protein, endotoxin, lipid binding protein; NMR {Penaeus monodon} (A:)
Probab=16.68 E-value=49 Score=16.10 Aligned_cols=15 Identities=33% Similarity=0.740 Sum_probs=11.9
Q ss_pred EEEEEEEEEEEEECC
Q ss_conf 240242121112049
Q gi|254780315|r 31 FKLKFLRFDLYFLGK 45 (45)
Q Consensus 31 fklkflrfdlyflgk 45 (45)
.+-++-||.|||-|+
T Consensus 38 v~P~~~r~ely~~G~ 52 (102)
T 2job_A 38 VKPYLKRFQVYYKGR 52 (102)
T ss_dssp EEEEEETTEEEEEEE
T ss_pred ECCCEEEEEEEEEEE
T ss_conf 556322004899778
No 2
>>3css_A 6-phosphogluconolactonase; structural genomics, medical structural genomics of pathogenic protozoa consortium, SGPP, leishmaniasis; 1.70A {Leishmania braziliensismhom} PDB: 3ch7_A (A:)
Probab=9.52 E-value=1.7e+02 Score=13.53 Aligned_cols=40 Identities=20% Similarity=0.169 Sum_probs=32.3
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEEEEEEEEEEEE
Q ss_conf 4765228856899999999712104102402421211120
Q gi|254780315|r 4 IWELSLGGSPCLMFFLLRSFLKDQIVFFKLKFLRFDLYFL 43 (45)
Q Consensus 4 iwelslggspclmffllrsflkdqivffklkflrfdlyfl 43 (45)
.+-+|-|.+|..+|=.|....+..|-|=+..|.-.|-|++
T Consensus 40 ~i~lsgG~tp~~~y~~L~~~~~~~i~w~~v~~~~~DEr~v 79 (267)
T 3css_A 40 VLALSGGSTPKRLYEELHEKDLALLQQHAVQFILGDERLL 79 (267)
T ss_dssp EEEECCSSTTHHHHHHHHHHSHHHHHTTCEEEEESEEESS
T ss_pred EEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEEECC
T ss_conf 9997898229999999986511025541699997356516
No 3
>>3g4n_A Aerolysin; toxin, cytolytic toxin, pore-forming toxin, membrane, secreted; 2.10A {Aeromonas hydrophila} PDB: 3g4o_A 1pre_A 1z52_A 3c0n_A 3c0m_A 3c0o_A* (A:1-84)
Probab=7.48 E-value=1.3e+02 Score=13.97 Aligned_cols=11 Identities=36% Similarity=0.594 Sum_probs=7.8
Q ss_pred HCCCEEEEEEE
Q ss_conf 12104102402
Q gi|254780315|r 24 LKDQIVFFKLK 34 (45)
Q Consensus 24 lkdqivffklk 34 (45)
..||||+|+|.
T Consensus 5 y~DQiv~d~Lg 15 (84)
T 3g4n_A 5 YPDQLRLFSLG 15 (84)
T ss_dssp CGGGCEEECSS
T ss_pred CCCCEEEECCC
T ss_conf 66417740147
No 4
>>2vqz_A Polymerase basic protein 2; CAP-binding domain; RNA-dependent RNA polymerase, transcription, PB2 subunit, influenza virus; HET: MGT MSE; 2.3A {Influenza a virus} (A:)
Probab=6.14 E-value=1.5e+02 Score=13.77 Aligned_cols=18 Identities=44% Similarity=0.600 Sum_probs=14.4
Q ss_pred HHHHHHHHHHCCCEEEEE
Q ss_conf 999999997121041024
Q gi|254780315|r 15 LMFFLLRSFLKDQIVFFK 32 (45)
Q Consensus 15 lmffllrsflkdqivffk 32 (45)
-|.-|+|.|+||.-|.|.
T Consensus 113 Pm~qllrhF~~~ak~lfq 130 (166)
T 2vqz_A 113 PXHQLLRHFQKDAKVLFQ 130 (166)
T ss_dssp HHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 599999998878899998
No 5
>>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal binding protein; 2.10A {Mus musculus} PDB: 2g2b_A (A:1-59,A:103-147)
Probab=5.70 E-value=60 Score=15.66 Aligned_cols=14 Identities=50% Similarity=1.084 Sum_probs=10.7
Q ss_pred EEEEEEEEEEEEEE
Q ss_conf 41024024212111
Q gi|254780315|r 28 IVFFKLKFLRFDLY 41 (45)
Q Consensus 28 ivffklkflrfdly 41 (45)
.--||-|+..||+|
T Consensus 47 Le~fK~kymEFdlY 60 (104)
T 1wy9_A 47 LEAFKVKYMEFDLY 60 (104)
T ss_dssp HHHHHHHHTTSCCH
T ss_pred HHHHHHHHHHHCCH
T ss_conf 99999999998789
No 6
>>1xks_A Nuclear pore complex protein NUP133; beta-propeller, helical insertions, protein transport; 2.35A {Homo sapiens} (A:251-382)
Probab=4.88 E-value=45 Score=16.28 Aligned_cols=12 Identities=33% Similarity=1.029 Sum_probs=8.5
Q ss_pred CCCCHHHHHHHH
Q ss_conf 288568999999
Q gi|254780315|r 9 LGGSPCLMFFLL 20 (45)
Q Consensus 9 lggspclmffll 20 (45)
.|.+||+|+|.|
T Consensus 47 p~d~Pcl~Y~~l 58 (132)
T 1xks_A 47 SADNPCLIYYSL 58 (132)
T ss_dssp TTSSSCBEEEEE
T ss_pred CCCCCCEEEEEE
T ss_conf 678853499999
No 7
>>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} (A:)
Probab=4.35 E-value=3.3e+02 Score=12.10 Aligned_cols=24 Identities=33% Similarity=0.663 Sum_probs=17.9
Q ss_pred EEEECCCCHHHHHHHHHHHHCCCE
Q ss_conf 765228856899999999712104
Q gi|254780315|r 5 WELSLGGSPCLMFFLLRSFLKDQI 28 (45)
Q Consensus 5 welslggspclmffllrsflkdqi 28 (45)
-||+-||.|.|....++..+...|
T Consensus 64 l~L~eGgPPalViw~ikhll~tgi 87 (167)
T 1qmy_A 64 LELHEGGPPALVIWNIKHLLHTGI 87 (167)
T ss_dssp CCCSSCCCHHHHHHHHGGGCSSCE
T ss_pred EEECCCCCCEEEEEEHHHHHCCCC
T ss_conf 131368997788665134520586
No 8
>>3bs1_A Accessory gene regulator protein A; lyttr, AGRA, response regulator, DNA binding domain; HET: DNA BRU; 1.60A {Staphylococcus aureus} (A:75-103)
Probab=4.08 E-value=2.8e+02 Score=12.45 Aligned_cols=10 Identities=60% Similarity=1.009 Sum_probs=7.4
Q ss_pred CCCEEEEEEE
Q ss_conf 2104102402
Q gi|254780315|r 25 KDQIVFFKLK 34 (45)
Q Consensus 25 kdqivffklk 34 (45)
|..||+||-.
T Consensus 7 kerivyfkn~ 16 (29)
T 3bs1_A 7 KERIVYFKNK 16 (29)
T ss_dssp TTTEEEETTS
T ss_pred CCCEEEEECC
T ss_conf 9849998099
No 9
>>2i7r_A Conserved domain protein; structural genomics conserved domain, PSI-2, protein structure initiative; 2.20A {Streptococcus pneumoniae} (A:1-59)
Probab=3.85 E-value=97 Score=14.66 Aligned_cols=6 Identities=67% Similarity=1.287 Sum_probs=0.0
Q ss_pred CCHHHH
Q ss_conf 856899
Q gi|254780315|r 11 GSPCLM 16 (45)
Q Consensus 11 gspclm 16 (45)
||.|||
T Consensus 44 gshclm 49 (59)
T 2i7r_A 44 GSHCLX 49 (59)
T ss_dssp TTEEEE
T ss_pred CCCCCC
T ss_conf 375432
No 10
>>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} (H:122-167)
Probab=3.25 E-value=45 Score=16.28 Aligned_cols=8 Identities=75% Similarity=1.613 Sum_probs=0.0
Q ss_pred CHHHHHHH
Q ss_conf 56899999
Q gi|254780315|r 12 SPCLMFFL 19 (45)
Q Consensus 12 spclmffl 19 (45)
|.||.|||
T Consensus 14 sacllffl 21 (46)
T 1mda_H 14 SACLLFFL 21 (46)
T ss_dssp SSCEEEEE
T ss_pred CCEEEEEE
T ss_conf 99899993
Done!