Query gi|254780315|ref|YP_003064728.1| hypothetical protein CLIBASIA_01000 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 45
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Wed Jun 1 02:38:02 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780315.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3c0na1 d.169.1.2 (A:2-84) Pro 4.3 1.1E+02 0.008 12.5 0.6 11 24-34 4-14 (83)
2 d3beda1 c.54.1.1 (A:1-132) PTS 3.8 1.5E+02 0.011 11.9 1.4 11 8-18 67-77 (132)
3 d2oo3a1 c.66.1.59 (A:9-279) Un 3.5 1.2E+02 0.0089 12.3 0.3 24 9-34 90-113 (271)
4 d1qmya_ d.3.1.2 (A:) FMDV lead 2.6 2.1E+02 0.015 11.2 1.3 23 6-28 65-87 (156)
5 d2qtva1 a.71.2.1 (A:524-626) S 2.5 2E+02 0.014 11.3 0.4 16 9-24 57-72 (103)
6 d1tr0a_ d.58.4.4 (A:) Boiling 2.1 2.4E+02 0.018 10.9 0.9 7 28-34 10-16 (106)
7 d1p7ba1 b.1.18.16 (A:152-309) 2.0 66 0.0048 13.6 -2.6 8 10-17 17-24 (158)
8 d1n9pa_ b.1.18.16 (A:) G prote 1.9 61 0.0044 13.8 -2.9 7 11-17 39-45 (202)
9 d1pdoa_ c.54.1.1 (A:) IIA doma 1.7 2.9E+02 0.021 10.5 1.4 12 9-20 68-79 (129)
10 d2csba5 a.267.1.1 (A:3-293) To 1.6 3E+02 0.022 10.4 0.3 8 7-14 92-99 (291)
No 1
>d3c0na1 d.169.1.2 (A:2-84) Proaerolysin, N-terminal domain {Aeromonas hydrophila [TaxId: 644]}
Probab=4.33 E-value=1.1e+02 Score=12.52 Aligned_cols=11 Identities=36% Similarity=0.594 Sum_probs=7.5
Q ss_pred HCCCEEEEEEE
Q ss_conf 12104102402
Q gi|254780315|r 24 LKDQIVFFKLK 34 (45)
Q Consensus 24 lkdqivffklk 34 (45)
..||||.|+|-
T Consensus 4 Y~DQlv~d~Lg 14 (83)
T d3c0na1 4 YPDQLRLFSLG 14 (83)
T ss_dssp CGGGCEEECSS
T ss_pred CCCEEEEECCC
T ss_conf 64307651236
No 2
>d3beda1 c.54.1.1 (A:1-132) PTS system, IIA subunit {Enterococcus faecalis [TaxId: 1351]}
Probab=3.82 E-value=1.5e+02 Score=11.87 Aligned_cols=11 Identities=36% Similarity=0.833 Sum_probs=7.7
Q ss_pred ECCCCHHHHHH
Q ss_conf 22885689999
Q gi|254780315|r 8 SLGGSPCLMFF 18 (45)
Q Consensus 8 slggspclmff 18 (45)
-+|||||-...
T Consensus 67 l~GGTP~N~a~ 77 (132)
T d3beda1 67 LKGGTPCNVAM 77 (132)
T ss_dssp STTSHHHHHHH
T ss_pred CCCCCHHHHHH
T ss_conf 46688669999
No 3
>d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]}
Probab=3.50 E-value=1.2e+02 Score=12.28 Aligned_cols=24 Identities=33% Similarity=0.545 Sum_probs=15.9
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 28856899999999712104102402
Q gi|254780315|r 9 LGGSPCLMFFLLRSFLKDQIVFFKLK 34 (45)
Q Consensus 9 lggspclmffllrsflkdqivffklk 34 (45)
--|||.++--++|. .|++.+|.|.
T Consensus 90 YPGSP~ia~~llR~--~Drl~l~ELH 113 (271)
T d2oo3a1 90 YPGSPYFAINQLRS--QDRLYLCELH 113 (271)
T ss_dssp EECHHHHHHHHSCT--TSEEEEECCS
T ss_pred CCCCHHHHHHHCCC--CCCEEEEECC
T ss_conf 89989999985787--7746885348
No 4
>d1qmya_ d.3.1.2 (A:) FMDV leader protease {Foot-and-mouth disease virus [TaxId: 12110]}
Probab=2.60 E-value=2.1e+02 Score=11.20 Aligned_cols=23 Identities=35% Similarity=0.702 Sum_probs=17.2
Q ss_pred EEECCCCHHHHHHHHHHHHCCCE
Q ss_conf 65228856899999999712104
Q gi|254780315|r 6 ELSLGGSPCLMFFLLRSFLKDQI 28 (45)
Q Consensus 6 elslggspclmffllrsflkdqi 28 (45)
+|+-||.|.+..+.++..+...|
T Consensus 65 ~L~~GgPPalViw~ik~ll~tgi 87 (156)
T d1qmya_ 65 ELHEGGPPALVIWNIKHLLHTGI 87 (156)
T ss_dssp CCSSCCCHHHHHHHHGGGCSSCE
T ss_pred EECCCCCCEEEEEEHHHHHCCCC
T ss_conf 52268997788665134521586
No 5
>d2qtva1 a.71.2.1 (A:524-626) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.51 E-value=2e+02 Score=11.26 Aligned_cols=16 Identities=25% Similarity=0.438 Sum_probs=11.6
Q ss_pred CCCCHHHHHHHHHHHH
Q ss_conf 2885689999999971
Q gi|254780315|r 9 LGGSPCLMFFLLRSFL 24 (45)
Q Consensus 9 lggspclmffllrsfl 24 (45)
+.--|-.||.|-||-+
T Consensus 57 fs~~PqfmfhLRRS~f 72 (103)
T d2qtva1 57 FSLYPQFTYYLRRSQF 72 (103)
T ss_dssp TTTHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 7765999999953016
No 6
>d1tr0a_ d.58.4.4 (A:) Boiling stable protein 1 {European aspen (Populus tremula) [TaxId: 113636]}
Probab=2.13 E-value=2.4e+02 Score=10.86 Aligned_cols=7 Identities=14% Similarity=0.425 Sum_probs=0.0
Q ss_pred EEEEEEE
Q ss_conf 4102402
Q gi|254780315|r 28 IVFFKLK 34 (45)
Q Consensus 28 ivffklk 34 (45)
||+||+|
T Consensus 10 iVlfklk 16 (106)
T d1tr0a_ 10 TLLTRFK 16 (106)
T ss_dssp EEEEEEC
T ss_pred EEEEEEC
T ss_conf 9999989
No 7
>d1p7ba1 b.1.18.16 (A:152-309) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}
Probab=2.04 E-value=66 Score=13.58 Aligned_cols=8 Identities=38% Similarity=0.513 Sum_probs=0.0
Q ss_pred CCCHHHHH
Q ss_conf 88568999
Q gi|254780315|r 10 GGSPCLMF 17 (45)
Q Consensus 10 ggspclmf 17 (45)
.|.|||||
T Consensus 17 dG~~~Lmf 24 (158)
T d1p7ba1 17 NGRMTLMV 24 (158)
T ss_dssp SSSEEEEE
T ss_pred CCEEEEEE
T ss_conf 99899999
No 8
>d1n9pa_ b.1.18.16 (A:) G protein-gated inward rectifier Girk1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=1.92 E-value=61 Score=13.76 Aligned_cols=7 Identities=57% Similarity=0.914 Sum_probs=0.0
Q ss_pred CCHHHHH
Q ss_conf 8568999
Q gi|254780315|r 11 GSPCLMF 17 (45)
Q Consensus 11 gspclmf 17 (45)
|.|||||
T Consensus 39 G~~~Lmf 45 (202)
T d1n9pa_ 39 GKLTLMF 45 (202)
T ss_dssp TEEEEEE
T ss_pred CEEEEEE
T ss_conf 9899999
No 9
>d1pdoa_ c.54.1.1 (A:) IIA domain of mannose transporter, IIA-Man {Escherichia coli [TaxId: 562]}
Probab=1.71 E-value=2.9e+02 Score=10.48 Aligned_cols=12 Identities=33% Similarity=0.371 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHH
Q ss_conf 288568999999
Q gi|254780315|r 9 LGGSPCLMFFLL 20 (45)
Q Consensus 9 lggspclmffll 20 (45)
.|||||-....+
T Consensus 68 ~GGsp~n~~~~~ 79 (129)
T d1pdoa_ 68 WGGSPFNAASRI 79 (129)
T ss_dssp TTSHHHHHHHHH
T ss_pred CCCCHHHHHHHH
T ss_conf 654316999999
No 10
>d2csba5 a.267.1.1 (A:3-293) Topoisomerase V, catalytic domain {Methanopyrus kandleri [TaxId: 2320]}
Probab=1.64 E-value=3e+02 Score=10.41 Aligned_cols=8 Identities=75% Similarity=1.182 Sum_probs=0.0
Q ss_pred EECCCCHH
Q ss_conf 52288568
Q gi|254780315|r 7 LSLGGSPC 14 (45)
Q Consensus 7 lslggspc 14 (45)
||.||||.
T Consensus 92 lstggspa 99 (291)
T d2csba5 92 LSTGGSPA 99 (291)
T ss_dssp STTCCCHH
T ss_pred HCCCCCCC
T ss_conf 40589864
Done!