RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780315|ref|YP_003064728.1| hypothetical protein
CLIBASIA_01000 [Candidatus Liberibacter asiaticus str. psy62]
         (45 letters)



>gnl|CDD|139085 PRK12583, PRK12583, acyl-CoA synthetase; Provisional.
          Length = 558

 Score = 24.7 bits (54), Expect = 5.9
 Identities = 9/20 (45%), Positives = 13/20 (65%), Gaps = 1/20 (5%)

Query: 20  LRSFLKDQIVFFKL-KFLRF 38
           LR F K +I  FK+ ++ RF
Sbjct: 510 LREFCKARIAHFKVPRYFRF 529


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.341    0.156    0.505 

Gapped
Lambda     K      H
   0.267   0.0655    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 734,187
Number of extensions: 28154
Number of successful extensions: 79
Number of sequences better than 10.0: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 2
Length of query: 45
Length of database: 5,994,473
Length adjustment: 18
Effective length of query: 27
Effective length of database: 5,605,529
Effective search space: 151349283
Effective search space used: 151349283
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 50 (23.2 bits)