HHsearch alignment for GI: 254780316 and conserved domain: COG4937

>COG4937 Predicted regulatory domain of prephenate dehydrogenase [Translation, ribosomal structure and biogenesis].
Probab=97.75  E-value=0.00047  Score=48.00  Aligned_cols=61  Identities=18%  Similarity=0.394  Sum_probs=50.6

Q ss_pred             CCCCEEEEEEEECCCCCHHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC-EEEEEEEEEECC
Q ss_conf             88720018999668879999999997111003576989876367799884-269999998477
Q gi|254780316|r  713 LHPVKRDLAFIVDQHIPAGTLVNIIKNVDRLIDDVTVFDVFQGKSLGEGK-KSVAIQVLIQPL  774 (805)
Q Consensus       713 fP~v~RDls~iv~~~v~~~~I~~~i~~~~~ll~~v~lfDvY~g~~i~~gk-kSla~rl~fqs~  774 (805)
T Consensus        80 L~~~v~DvSvlf~~~vDpEvil~avkll-k~~vd~~I~DvY~G~~i~ede~~siT~Ri~~f~~  141 (171)
T COG4937          80 LEKKVIDVSVLFKKDVDPEVILNAVKLL-KKMVDIEIIDVYEGEKIEEDEYKSITFRIYGFNK  141 (171)
T ss_pred             HHEEEEEEEEEECCCCCHHHHHHHHHHH-HHEEEEEEEEEECCCCCCCCCEEEEEEEEEEECH
T ss_conf             3007888999834899989987278765-3136789987202775798854358999999571