HHsearch alignment for GI: 254780316 and conserved domain: COG4937
>COG4937 Predicted regulatory domain of prephenate dehydrogenase [Translation, ribosomal structure and biogenesis].
Probab=97.75 E-value=0.00047 Score=48.00 Aligned_cols=61 Identities=18% Similarity=0.394 Sum_probs=50.6
Q ss_pred CCCCEEEEEEEECCCCCHHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC-EEEEEEEEEECC
Q ss_conf 88720018999668879999999997111003576989876367799884-269999998477
Q gi|254780316|r 713 LHPVKRDLAFIVDQHIPAGTLVNIIKNVDRLIDDVTVFDVFQGKSLGEGK-KSVAIQVLIQPL 774 (805)
Q Consensus 713 fP~v~RDls~iv~~~v~~~~I~~~i~~~~~ll~~v~lfDvY~g~~i~~gk-kSla~rl~fqs~ 774 (805)
T Consensus 80 L~~~v~DvSvlf~~~vDpEvil~avkll-k~~vd~~I~DvY~G~~i~ede~~siT~Ri~~f~~ 141 (171)
T COG4937 80 LEKKVIDVSVLFKKDVDPEVILNAVKLL-KKMVDIEIIDVYEGEKIEEDEYKSITFRIYGFNK 141 (171)
T ss_pred HHEEEEEEEEEECCCCCHHHHHHHHHHH-HHEEEEEEEEEECCCCCCCCCEEEEEEEEEEECH
T ss_conf 3007888999834899989987278765-3136789987202775798854358999999571