HHsearch alignment for GI: 254780316 and conserved domain: TIGR02222
>TIGR02222 chap_CsaA export-related chaperone CsaA; InterPro: IPR008231 The CsaA protein is required for SecA-mediated translocation of a subset of proteins , . CsaA and its relatives are typified by the presence of little more than a tRNA-binding motif that adopts an OB-fold. The Aquifex aeolicus member, Trbp111, has been demonstrated to bind tRNA, likely in a structure-specific manner .; GO: 0000049 tRNA binding, 0008565 protein transporter activity, 0015031 protein transport.
Probab=92.71 E-value=0.096 Score=31.60 Aligned_cols=75 Identities=21% Similarity=0.389 Sum_probs=50.5
Q ss_pred CEEEEEEEEEEECCCCC--CCEEEEECCCCCE--------------------EEEECCCCCCCCCCEEEEECCCCEECCC
Q ss_conf 74899999975657998--7089997599957--------------------9897548345589789896687792589
Q gi|254780316|r 43 PFTIVKVLSVERNPDLD--CAILRIDTGKHQE--------------------IQVVCGAPNVRVGLLGVWAPPGSCIPEN 100 (805)
Q Consensus 43 ~vvvg~v~~~~~hP~ad--l~v~~Vd~g~~~~--------------------~~IvcgA~Nv~~g~~V~~A~~Ga~lp~g 100 (805)
T Consensus 8 dlRVGrIv~a~~fPeARKPAY~L~vDfG~-elG~k~SSAQiT~lY~~E~L~gr~Vva-VVN------------------- 66 (107)
T TIGR02222 8 DLRVGRIVKAEPFPEARKPAYKLEVDFGE-ELGVKTSSAQITKLYKPEDLVGRLVVA-VVN------------------- 66 (107)
T ss_pred EECCCCEEEECCCCCCCCCEEEEEEECCC-CCCCCCCHHHHHCCCCCCCCCCCEEEE-EEC-------------------
T ss_conf 30226378616898557871799970179-777414405641237833001977899-981-------------------
Q ss_pred CEEEEEEHHCCCCCCCHHHHHHHCCCCCCCCCEEEE--CCCCCCCCCH
Q ss_conf 839833120586505454118876998547750781--6888888455
Q gi|254780316|r 101 NMIVNVRKIRGIESTGMMCSEKELMLSDDSASIMEL--PIDAPVGGRL 146 (805)
Q Consensus 101 ~~~i~~~~irGv~S~GMlCS~~ELgl~~~~~gI~~l--~~~~~~G~~~ 146 (805)
T Consensus 67 ---FppKqiA~f~SEVLV-----lG~~~~~g~VvL~~pD~~vp~G~k~ 106 (107)
T TIGR02222 67 ---FPPKQIAGFKSEVLV-----LGVIDEEGEVVLLQPDREVPLGTKI 106 (107)
T ss_pred ---CCCCEECCCEEEEEE-----CCCCCCCCCEEEEECCCCCCCCCCC
T ss_conf ---887305692404886-----1833787877986348668898504