HHsearch alignment for GI: 254780316 and conserved domain: cd00779

>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.
Probab=92.15  E-value=0.95  Score=24.54  Aligned_cols=92  Identities=7%  Similarity=0.082  Sum_probs=56.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH----HHHHHCCCCCCCCCCCCCCCCHHHCHHHHHHHHHCC-C
Q ss_conf             99889546789887877877402321004825765520----000000024677643210151221106776432101-5
Q gi|254780316|r  488 LSLQQSRTRYVKRVLASRAMMEVVNWSFISKEQSVLFG----GGQRELEILNPISADMSNMRTSLLPGLLKATGRNVD-R  562 (805)
Q Consensus       488 ~~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~----~~~~~i~l~NPlS~e~s~lR~SLlp~LL~~~~~N~~-r  562 (805)
T Consensus        31 ~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~f~~emf~v~d~~~~~-~~L~PT~E~~~~~~~~~~i~Sy  109 (255)
T cd00779          31 LRVLKKIENIIREEMNKIGAQEILMPILQPAELWKESGRWDAYGPELLRLKDRHGKE-FLLGPTHEEVITDLVANEIKSY  109 (255)
T ss_pred             HHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHCCCCCCCCCEEEEECCCCCE-EEECCCCHHHHHHHHHHHCCCH
T ss_conf             999999999999999985998997653473888744253013687315445378877-7316887488999998650361


Q ss_pred             CCCHHHHHHHCCCCCCCC
Q ss_conf             861134543024444777
Q gi|254780316|r  563 AIADFAIFEVSHVYENDT  580 (805)
Q Consensus       563 ~~~~i~lFEiG~Vf~~~~  580 (805)
T Consensus       110 rdLPl~~~q~~~~fR~E~  127 (255)
T cd00779         110 KQLPLNLYQIQTKFRDEI  127 (255)
T ss_pred             HHCCEEEECCCCEECCCC
T ss_conf             225745413533542566