HHsearch alignment for GI: 254780316 and conserved domain: cd00779
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.
Probab=92.15 E-value=0.95 Score=24.54 Aligned_cols=92 Identities=7% Similarity=0.082 Sum_probs=56.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH----HHHHHCCCCCCCCCCCCCCCCHHHCHHHHHHHHHCC-C
Q ss_conf 99889546789887877877402321004825765520----000000024677643210151221106776432101-5
Q gi|254780316|r 488 LSLQQSRTRYVKRVLASRAMMEVVNWSFISKEQSVLFG----GGQRELEILNPISADMSNMRTSLLPGLLKATGRNVD-R 562 (805)
Q Consensus 488 ~~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~----~~~~~i~l~NPlS~e~s~lR~SLlp~LL~~~~~N~~-r 562 (805)
T Consensus 31 ~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~f~~emf~v~d~~~~~-~~L~PT~E~~~~~~~~~~i~Sy 109 (255)
T cd00779 31 LRVLKKIENIIREEMNKIGAQEILMPILQPAELWKESGRWDAYGPELLRLKDRHGKE-FLLGPTHEEVITDLVANEIKSY 109 (255)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHCCCCCCCCCEEEEECCCCCE-EEECCCCHHHHHHHHHHHCCCH
T ss_conf 999999999999999985998997653473888744253013687315445378877-7316887488999998650361
Q ss_pred CCCHHHHHHHCCCCCCCC
Q ss_conf 861134543024444777
Q gi|254780316|r 563 AIADFAIFEVSHVYENDT 580 (805)
Q Consensus 563 ~~~~i~lFEiG~Vf~~~~ 580 (805)
T Consensus 110 rdLPl~~~q~~~~fR~E~ 127 (255)
T cd00779 110 KQLPLNLYQIQTKFRDEI 127 (255)
T ss_pred HHCCEEEECCCCEECCCC
T ss_conf 225745413533542566