HHsearch alignment for GI: 254780316 and conserved domain: cd02799
>cd02799 tRNA_bind_EMAP-II_like tRNA-binding-domain-containing EMAP2-like proteins. This family contains a diverse fraction of tRNA binding proteins, including Caenorhabditis elegans methionyl-tRNA synthetase (CeMetRS), human tyrosyl- tRNA synthetase (hTyrRS), Saccharomyces cerevisiae Arc1p, human p43 and EMAP2. CeMetRS and hTyrRS aminoacylate their cognate tRNAs. Arc1p is a transactivator of yeast methionyl-tRNA and glutamyl-tRNA synthetases. This domain has general tRNA binding properties. In a subset of this family this domain has the added capability of a cytokine. For example the p43 component of the Human aminoacyl-tRNA synthetase complex is cleaved to release EMAP-II cytokine. EMAP-II has multiple activities during apoptosis, angiogenesis and inflammation and participates in malignant transformation. A EMAP-II-like cytokine also is released from hTyrRS upon cleavage. The active cytokine heptapeptide locates to this domain.
Probab=99.68 E-value=4.3e-17 Score=140.47 Aligned_cols=95 Identities=25% Similarity=0.381 Sum_probs=72.0
Q ss_pred CEEEEEEEEEEECCCCC-CCEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCEECCCCEEEEEEHHCCCCCCCHHHHH
Q ss_conf 74899999975657998-70899975999579897548345589789896687792589839833120586505454118
Q gi|254780316|r 43 PFTIVKVLSVERNPDLD-CAILRIDTGKHQEIQVVCGAPNVRVGLLGVWAPPGSCIPENNMIVNVRKIRGIESTGMMCSE 121 (805)
Q Consensus 43 ~vvvg~v~~~~~hP~ad-l~v~~Vd~g~~~~~~IvcgA~Nv~~g~~V~~A~~Ga~lp~g~~~i~~~~irGv~S~GMlCS~ 121 (805)
T Consensus 7 dirVG~I~~~e~hp~adkL~~~~VD~G~~~~r~ivsg~~~~y~----~e~L~gk~v~-~v~Nlkp~kirG~~SegMiL~a 81 (105)
T cd02799 7 DIRVGKILKVRKHPDADSLYVEEIDLGEEEPRTIVSGLVKFVP----LEQMQNRLVV-VLCNLKPRKMRGVKSQGMVLCA 81 (105)
T ss_pred EEEEEEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCCC----HHHHCCCEEE-EEEEECCCCCCCCCCEEEEEEE
T ss_conf 9999999999989998854799998289723899970034249----8893787589-9963166207892650699997
Q ss_pred HHCCCCCCCCCE--EEECCCCCCCCCH
Q ss_conf 876998547750--7816888888455
Q gi|254780316|r 122 KELMLSDDSASI--MELPIDAPVGGRL 146 (805)
Q Consensus 122 ~ELgl~~~~~gI--~~l~~~~~~G~~~ 146 (805)
T Consensus 82 ~----~~d~~~v~ll~p~~~~~~G~rI 104 (105)
T cd02799 82 S----NADHEKVELLEPPEGAKPGERV 104 (105)
T ss_pred E----CCCCCEEEEECCCCCCCCCCCC
T ss_conf 8----4999879996389998898856