HHsearch alignment for GI: 254780316 and conserved domain: cd02800
>cd02800 tRNA_bind_EcMetRS_like tRNA-binding-domain-containing Escherichia coli methionyl-tRNA synthetase (EcMetRS)-like proteins. This family includes EcMetRS and Aquifex aeolicus Trbp111 (AaTrbp111). This domain has general tRNA binding properties. MetRS aminoacylates methionine transfer RNAs (tRNAmet). AaTrbp111 is structure-specific molecular chaperone recognizing the L-shape of the tRNA fold. AaTrbp111 plays a role in nuclear trafficking of tRNAs. The functional unit of EcMetRs and AaTrbp111 is a homodimer, this domain acts as the dimerization domain.
Probab=99.39 E-value=2.3e-13 Score=113.98 Aligned_cols=92 Identities=26% Similarity=0.369 Sum_probs=68.2
Q ss_pred CEEEEEEEEEEECCCCC-CCEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCEECCCCEEEEEEHHCCCCCCCHHHHH
Q ss_conf 74899999975657998-70899975999579897548345589789896687792589839833120586505454118
Q gi|254780316|r 43 PFTIVKVLSVERNPDLD-CAILRIDTGKHQEIQVVCGAPNVRVGLLGVWAPPGSCIPENNMIVNVRKIRGIESTGMMCSE 121 (805)
Q Consensus 43 ~vvvg~v~~~~~hP~ad-l~v~~Vd~g~~~~~~IvcgA~Nv~~g~~V~~A~~Ga~lp~g~~~i~~~~irGv~S~GMlCS~ 121 (805)
T Consensus 10 DirVG~I~~ve~~p~a~kL~~~~VD~G~-~~r~ivsgi~~~----y~~eeLiGk~v~-~v~Nlkp~ki~G~~SegmiL~a 83 (105)
T cd02800 10 DLRVGKVLEAERVEGSDKLLKLTVDLGE-EERQIVSGIAKF----YPPEELVGKKVV-VVANLKPRKLRGVESQGMILAA 83 (105)
T ss_pred EEEEEEEEEEEECCCCCEEEEEEEEECC-CCEEEEECCCCC----CCHHHHCCCEEE-EEEEECCCCCCCCCCCEEEEEE
T ss_conf 1899999999977885303999998478-527999846551----298995899899-9982158338991276899988
Q ss_pred HHCCCCCCCCC--EEEECCCCCCCCCH
Q ss_conf 87699854775--07816888888455
Q gi|254780316|r 122 KELMLSDDSAS--IMELPIDAPVGGRL 146 (805)
Q Consensus 122 ~ELgl~~~~~g--I~~l~~~~~~G~~~ 146 (805)
T Consensus 84 ~~------~~~v~ll~p~~~~~~G~~v 104 (105)
T cd02800 84 ED------GGKLKLLTPDEEVEPGSRV 104 (105)
T ss_pred EC------CCEEEEEECCCCCCCCCCC
T ss_conf 07------9999999379998898756