Query gi|254780316|ref|YP_003064729.1| phenylalanyl-tRNA synthetase subunit beta [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 805
No_of_seqs 256 out of 2999
Neff 7.5
Searched_HMMs 39220
Date Sun May 29 15:46:56 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780316.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00629 pheT phenylalanyl-tRN 100.0 0 0 1889.9 67.6 783 1-804 1-786 (786)
2 TIGR00472 pheT_bact phenylalan 100.0 0 0 1800.5 61.7 797 1-803 1-848 (848)
3 CHL00192 syfB phenylalanyl-tRN 100.0 0 0 1456.7 49.7 676 1-803 1-701 (702)
4 COG0072 PheT Phenylalanyl-tRNA 100.0 0 0 1199.6 44.1 643 142-803 1-650 (650)
5 PRK09616 pheT phenylalanyl-tRN 100.0 0 0 910.9 37.1 505 3-695 6-545 (546)
6 TIGR00471 pheT_arch phenylalan 100.0 0 0 556.4 22.1 497 143-694 37-604 (605)
7 pfam03483 B3_4 B3/4 domain. Th 100.0 0 0 448.4 10.7 173 213-385 1-174 (174)
8 KOG2472 consensus 100.0 0 0 429.0 20.8 474 153-694 59-577 (578)
9 smart00873 B3_4 B3/4 domain. T 100.0 0 0 362.8 11.0 172 214-385 1-174 (174)
10 cd00769 PheRS_beta_core Phenyl 100.0 9.9E-44 0 329.5 12.3 195 491-694 2-198 (198)
11 cd02796 tRNA_bind_bactPheRS tR 100.0 3.4E-32 8.8E-37 247.6 10.1 102 44-146 1-103 (103)
12 COG0073 ARC1 EMAP domain [Gene 99.9 5.2E-28 1.3E-32 218.0 8.2 120 25-146 1-123 (123)
13 pfam03147 FDX-ACB Ferredoxin-f 99.9 1.8E-24 4.6E-29 192.9 13.4 93 711-803 1-94 (94)
14 cd02153 tRNA_bindingDomain The 99.9 3.1E-24 8E-29 191.2 8.6 93 44-146 1-99 (99)
15 pfam01588 tRNA_bind Putative t 99.8 2.3E-21 5.8E-26 170.9 6.2 93 44-145 1-94 (94)
16 TIGR00469 pheS_mito phenylalan 99.8 1.5E-18 3.7E-23 150.9 12.1 163 637-802 264-460 (460)
17 KOG2783 consensus 99.8 8.1E-19 2.1E-23 152.7 10.4 182 619-803 228-436 (436)
18 pfam03484 B5 tRNA synthetase B 99.7 7.2E-18 1.8E-22 146.0 4.4 69 401-469 1-69 (69)
19 cd02799 tRNA_bind_EMAP-II_like 99.7 4.3E-17 1.1E-21 140.5 5.5 95 43-146 7-104 (105)
20 smart00874 B5 tRNA synthetase 99.7 5.8E-17 1.5E-21 139.6 4.3 69 401-469 1-71 (71)
21 cd02800 tRNA_bind_EcMetRS_like 99.4 2.3E-13 6E-18 114.0 4.1 92 43-146 10-104 (105)
22 PRK12267 methionyl-tRNA synthe 99.3 2.3E-12 5.9E-17 106.9 6.5 22 404-425 293-314 (644)
23 COG3382 Solo B3/4 domain (OB-f 99.3 1.1E-11 2.9E-16 102.0 9.6 141 227-390 80-222 (229)
24 PRK00133 metG methionyl-tRNA s 99.3 4.7E-12 1.2E-16 104.8 7.3 16 373-388 388-403 (666)
25 cd02798 tRNA_bind_CsaA tRNA-bi 99.2 3E-11 7.6E-16 99.1 6.6 87 43-145 10-106 (107)
26 PRK10089 hypothetical protein; 99.2 9.9E-12 2.5E-16 102.5 3.8 88 43-146 13-109 (110)
27 PRK04172 pheS phenylalanyl-tRN 99.1 3.7E-09 9.5E-14 84.2 11.6 191 484-698 240-480 (501)
28 pfam01409 tRNA-synt_2d tRNA sy 99.0 9.7E-09 2.5E-13 81.2 12.4 191 485-697 13-222 (243)
29 COG2517 Predicted RNA-binding 99.0 1.3E-09 3.2E-14 87.5 6.6 68 42-121 120-188 (219)
30 PTZ00326 phenylalanyl-tRNA syn 98.9 5.3E-08 1.4E-12 76.0 13.7 192 484-697 237-488 (505)
31 PRK06253 O-phosphoseryl-tRNA s 98.9 5E-09 1.3E-13 83.3 8.1 209 534-758 175-400 (527)
32 KOG2241 consensus 98.8 7.7E-09 2E-13 81.9 5.1 91 41-146 96-195 (255)
33 COG0016 PheS Phenylalanyl-tRNA 98.8 3.7E-07 9.5E-12 70.0 13.3 192 485-697 107-315 (335)
34 TIGR00399 metG_C_term methiony 98.7 1.4E-08 3.5E-13 80.2 4.1 95 43-146 47-148 (149)
35 cd00496 PheRS_alpha_core Pheny 98.6 5.8E-07 1.5E-11 68.6 10.6 181 492-698 4-203 (218)
36 PRK08655 prephenate dehydrogen 98.5 4E-06 1E-10 62.6 12.2 131 659-803 310-440 (441)
37 pfam09513 consensus 98.5 5.3E-07 1.4E-11 68.9 7.7 97 44-151 4-122 (356)
38 PHA02142 putative RNA ligase 98.5 8.7E-07 2.2E-11 67.4 8.0 96 44-151 10-124 (366)
39 PRK00488 pheS phenylalanyl-tRN 98.3 1.4E-05 3.6E-10 58.8 11.7 186 486-697 104-317 (338)
40 TIGR02306 RNA_lig_DRB0094 RNA 97.9 4.6E-06 1.2E-10 62.2 1.3 217 45-381 4-246 (374)
41 COG4937 Predicted regulatory d 97.7 0.00047 1.2E-08 48.0 10.0 61 713-774 80-141 (171)
42 PRK09537 pylS pyrolysyl-tRNA s 97.7 1.3E-05 3.4E-10 59.0 1.5 182 492-698 210-397 (420)
43 COG2024 Phenylalanyl-tRNA synt 97.5 7.8E-05 2E-09 53.5 3.6 179 531-725 173-368 (536)
44 TIGR00468 pheS phenylalanyl-tR 97.5 0.0007 1.8E-08 46.7 8.5 146 538-698 174-338 (362)
45 cd00768 class_II_aaRS-like_cor 97.5 0.00071 1.8E-08 46.7 7.9 178 492-681 3-188 (211)
46 TIGR00470 sepS O-phosphoseryl- 97.5 0.00031 8E-09 49.2 6.0 213 531-761 183-424 (558)
47 KOG2784 consensus 97.4 0.0021 5.4E-08 43.4 9.1 222 447-691 166-445 (483)
48 TIGR02367 PylS pyrrolysyl-tRNA 97.3 0.0002 5E-09 50.7 2.9 180 492-699 243-431 (453)
49 cd00773 HisRS-like_core Class 96.4 0.03 7.7E-07 35.2 8.5 90 491-581 5-97 (261)
50 PRK09616 pheT phenylalanyl-tRN 94.7 0.043 1.1E-06 34.1 4.0 53 236-288 132-185 (546)
51 PRK12292 hisZ ATP phosphoribos 94.2 0.039 9.9E-07 34.4 2.8 62 668-741 289-352 (388)
52 PRK12295 hisZ ATP phosphoribos 93.9 0.049 1.3E-06 33.7 2.8 22 674-695 345-368 (373)
53 pfam00587 tRNA-synt_2b tRNA sy 93.0 0.096 2.4E-06 31.6 3.1 88 492-580 3-95 (170)
54 PRK00037 hisS histidyl-tRNA sy 92.9 0.088 2.3E-06 31.8 2.8 32 668-700 286-318 (417)
55 TIGR02222 chap_CsaA export-rel 92.7 0.096 2.4E-06 31.6 2.8 75 43-146 8-106 (107)
56 cd00779 ProRS_core_prok Prolyl 92.1 0.95 2.4E-05 24.5 8.3 92 488-580 31-127 (255)
57 PRK12421 ATP phosphoribosyltra 91.5 0.15 3.9E-06 30.2 2.6 80 648-744 277-360 (391)
58 CHL00192 syfB phenylalanyl-tRN 91.1 0.23 6E-06 28.8 3.3 68 652-740 615-688 (702)
59 CHL00201 syh histidine-tRNA sy 90.1 0.3 7.5E-06 28.1 3.1 64 668-741 285-352 (424)
60 PRK12420 histidyl-tRNA synthet 90.0 0.27 7E-06 28.4 2.8 27 673-699 301-330 (421)
61 cd00778 ProRS_core_arch_euk Pr 89.7 0.49 1.2E-05 26.6 3.9 122 448-581 4-134 (261)
62 PRK12293 hisZ ATP phosphoribos 89.0 0.21 5.2E-06 29.3 1.5 88 491-580 22-109 (281)
63 PRK03932 asnC asparaginyl-tRNA 88.9 0.29 7.3E-06 28.2 2.2 33 45-80 22-54 (462)
64 pfam00152 tRNA-synt_2 tRNA syn 87.8 0.55 1.4E-05 26.2 3.1 115 492-633 26-140 (341)
65 PRK12325 prolyl-tRNA synthetas 87.6 0.59 1.5E-05 26.0 3.2 26 231-261 40-65 (438)
66 cd00776 AsxRS_core Asx tRNA sy 87.5 0.44 1.1E-05 26.9 2.5 79 491-582 27-105 (322)
67 PRK11342 mhpD 2-keto-4-penteno 86.6 2.4 6.1E-05 21.7 7.0 23 664-686 57-80 (262)
68 TIGR02865 spore_II_E stage II 86.6 1.2 3E-05 23.8 4.2 96 685-786 662-769 (794)
69 cd00771 ThrRS_core Threonyl-tR 86.4 0.64 1.6E-05 25.7 2.8 93 486-581 28-126 (298)
70 COG0124 HisS Histidyl-tRNA syn 86.2 0.82 2.1E-05 25.0 3.3 65 668-741 293-362 (429)
71 PRK12305 thrS threonyl-tRNA sy 86.1 0.92 2.3E-05 24.6 3.5 150 409-581 149-305 (576)
72 PRK12445 lysyl-tRNA synthetase 85.1 0.91 2.3E-05 24.7 3.1 112 492-632 188-301 (505)
73 TIGR01393 lepA GTP-binding pro 84.7 2.9 7.5E-05 21.1 7.0 158 546-738 250-425 (598)
74 cd00770 SerRS_core Seryl-tRNA 84.2 0.77 2E-05 25.2 2.4 129 446-581 11-146 (297)
75 PRK05159 aspC aspartyl-tRNA sy 83.3 1.5 3.7E-05 23.2 3.5 34 45-81 21-54 (434)
76 PRK08526 threonine dehydratase 82.9 1.5 3.8E-05 23.1 3.4 297 111-437 77-401 (403)
77 PRK12304 thrS threonyl-tRNA sy 82.3 2.4 6.2E-05 21.6 4.3 146 410-581 181-335 (604)
78 PRK06382 threonine dehydratase 79.7 2.5 6.3E-05 21.6 3.6 296 110-436 75-398 (400)
79 PRK02983 lysS lysyl-tRNA synth 79.1 1.5 3.9E-05 23.1 2.3 76 492-580 780-858 (1099)
80 cd00775 LysRS_core Lys_tRNA sy 78.0 2.9 7.5E-05 21.1 3.6 25 493-517 13-37 (329)
81 PRK03772 threonyl-tRNA synthet 76.7 2.5 6.4E-05 21.5 2.9 239 410-681 214-496 (642)
82 PRK00413 thrS threonyl-tRNA sy 76.4 2.7 7E-05 21.3 3.0 149 410-582 211-366 (639)
83 cd00669 Asp_Lys_Asn_RS_core As 76.2 3.3 8.4E-05 20.7 3.4 115 492-633 5-119 (269)
84 PRK04483 threonyl-tRNA synthet 75.8 2.9 7.3E-05 21.1 3.0 147 409-581 213-367 (634)
85 KOG0556 consensus 75.7 1.9 4.9E-05 22.4 2.1 88 489-588 229-316 (533)
86 TIGR01127 ilvA_1Cterm threonin 75.5 5.7 0.00015 19.0 5.4 282 111-436 57-380 (381)
87 PRK09350 lysyl-tRNA synthetase 75.0 2.2 5.6E-05 21.9 2.3 116 490-633 18-139 (325)
88 pfam09840 DUF2067 Uncharacteri 74.8 2.6 6.7E-05 21.4 2.6 62 402-468 69-130 (190)
89 PRK08198 threonine dehydratase 74.2 2.4 6.1E-05 21.7 2.3 292 111-436 81-403 (406)
90 COG1190 LysU Lysyl-tRNA synthe 73.2 2.9 7.5E-05 21.1 2.5 108 493-632 185-297 (502)
91 PRK00484 lysS lysyl-tRNA synth 71.1 5.7 0.00015 19.0 3.6 59 16-82 33-92 (491)
92 PRK12444 threonyl-tRNA synthet 70.5 5.8 0.00015 19.0 3.5 146 410-581 217-370 (639)
93 TIGR03220 catechol_dmpE 2-oxop 69.6 7.8 0.0002 18.1 7.2 23 664-686 53-76 (255)
94 PRK03991 threonyl-tRNA synthet 69.3 6 0.00015 18.8 3.4 114 462-580 201-323 (613)
95 cd00772 ProRS_core Prolyl-tRNA 68.5 6.3 0.00016 18.7 3.4 93 488-580 32-133 (264)
96 cd00777 AspRS_core Asp tRNA sy 66.2 7.6 0.00019 18.1 3.4 113 492-632 5-118 (280)
97 PRK06462 asparagine synthetase 66.0 4.6 0.00012 19.7 2.3 117 490-632 31-149 (332)
98 TIGR00308 TRM1 N2,N2-dimethylg 65.9 6 0.00015 18.8 2.8 23 442-465 342-364 (462)
99 cd00670 Gly_His_Pro_Ser_Thr_tR 64.4 6.7 0.00017 18.5 2.8 92 490-581 4-103 (235)
100 TIGR00802 nico transition meta 63.8 1.7 4.3E-05 22.7 -0.3 41 265-331 11-51 (290)
101 TIGR00458 aspS_arch aspartyl-t 62.5 5.2 0.00013 19.3 2.0 54 292-345 206-263 (466)
102 pfam11148 DUF2922 Protein of u 62.1 11 0.00027 17.1 4.0 36 752-793 6-41 (69)
103 TIGR01703 hybrid_clust hydroxy 61.1 7.4 0.00019 18.2 2.6 24 504-527 211-234 (567)
104 pfam02005 TRM N2,N2-dimethylgu 61.0 6.4 0.00016 18.7 2.2 21 254-274 111-131 (375)
105 PRK12820 bifunctional aspartyl 59.1 7.3 0.00019 18.3 2.3 82 651-736 488-596 (706)
106 TIGR02902 spore_lonB ATP-depen 58.4 3.4 8.7E-05 20.6 0.5 60 280-340 117-213 (532)
107 TIGR00418 thrS threonyl-tRNA s 55.4 12 0.00031 16.7 2.9 148 409-580 147-309 (595)
108 PRK04140 hypothetical protein; 55.1 14 0.00035 16.3 3.8 83 346-438 144-227 (319)
109 pfam08853 DUF1823 Domain of un 53.9 8 0.0002 18.0 1.8 57 406-462 2-62 (116)
110 COG0441 ThrS Threonyl-tRNA syn 52.4 15 0.00039 16.0 4.6 147 410-581 162-316 (589)
111 TIGR00501 met_pdase_II methion 51.0 8.9 0.00023 17.6 1.6 42 241-303 172-213 (327)
112 TIGR00442 hisS histidyl-tRNA s 50.9 15 0.00039 16.0 2.8 28 670-697 307-335 (446)
113 PRK07334 threonine dehydratase 50.3 14 0.00036 16.2 2.6 124 303-436 270-397 (399)
114 KOG1936 consensus 50.1 16 0.00042 15.7 3.1 22 681-702 389-410 (518)
115 TIGR00268 TIGR00268 conserved 46.9 18 0.00047 15.4 3.0 180 327-511 42-253 (263)
116 PRK07522 acetylornithine deace 46.2 19 0.00048 15.3 4.1 45 4-48 7-59 (387)
117 pfam08501 Shikimate_dh_N Shiki 45.3 9.9 0.00025 17.3 1.1 48 418-469 32-79 (83)
118 PRK12310 hydroxylamine reducta 45.2 19 0.0005 15.2 3.9 12 749-760 386-397 (429)
119 TIGR01278 DPOR_BchB light-inde 44.2 5.3 0.00014 19.2 -0.4 82 414-509 173-270 (562)
120 PRK05290 hydroxylamine reducta 43.9 19 0.0005 15.2 2.4 14 747-760 495-508 (540)
121 COG4079 Uncharacterized protei 43.1 21 0.00053 15.0 4.4 40 16-55 44-87 (293)
122 TIGR01047 nspC carboxynorsperm 42.3 8.5 0.00022 17.8 0.4 72 440-537 77-152 (403)
123 cd01914 HCP Hybrid cluster pro 42.3 21 0.00055 14.9 2.5 10 169-178 74-83 (423)
124 TIGR01362 KDO8P_synth 3-deoxy- 42.2 16 0.00041 15.8 1.8 25 163-187 46-70 (279)
125 COG0849 ftsA Cell division ATP 42.1 22 0.00055 14.9 3.8 12 61-72 7-18 (418)
126 TIGR01371 met_syn_B12ind 5-met 41.9 14 0.00035 16.3 1.4 93 415-514 278-381 (778)
127 TIGR01995 PTS-II-ABC-beta PTS 41.7 12 0.00031 16.7 1.1 15 337-351 161-176 (660)
128 KOG1885 consensus 39.6 12 0.0003 16.7 0.8 74 493-580 230-307 (560)
129 COG2877 KdsA 3-deoxy-D-manno-o 39.5 18 0.00046 15.4 1.7 33 155-187 51-84 (279)
130 cd01982 Chlide_reductase_Z Chl 38.3 12 0.0003 16.8 0.6 23 415-437 166-190 (412)
131 TIGR01059 gyrB DNA gyrase, B s 37.6 25 0.00064 14.4 2.2 115 383-513 441-582 (818)
132 KOG0578 consensus 37.3 25 0.00065 14.4 2.5 11 458-468 316-326 (550)
133 pfam05919 Mitovir_RNA_pol Mito 37.1 0.75 1.9E-05 25.2 -5.6 72 256-329 200-274 (495)
134 KOG2713 consensus 36.0 27 0.00068 14.3 2.9 16 617-632 283-299 (347)
135 TIGR02628 fuculo_kin_coli L-fu 35.3 19 0.00048 15.3 1.3 17 213-230 105-121 (473)
136 PRK06133 glutamate carboxypept 35.2 27 0.0007 14.2 5.2 44 5-48 48-101 (418)
137 cd04750 Commd2 COMM_Domain con 35.0 24 0.00061 14.6 1.8 96 339-456 15-111 (166)
138 COG3971 2-keto-4-pentenoate hy 34.6 28 0.00071 14.1 3.9 13 224-236 59-71 (264)
139 KOG0736 consensus 34.1 11 0.00028 17.0 -0.1 24 413-436 500-523 (953)
140 pfam02027 RolB_RolC RolB/RolC 33.7 29 0.00073 14.0 2.0 40 417-456 77-116 (189)
141 PRK08639 threonine dehydratase 32.8 30 0.00076 13.9 4.0 293 111-437 82-406 (418)
142 COG1724 Predicted RNA binding 32.6 30 0.00077 13.9 2.5 33 418-450 6-47 (66)
143 COG0381 WecB UDP-N-acetylgluco 32.2 27 0.00069 14.2 1.7 22 444-466 207-231 (383)
144 cd01990 Alpha_ANH_like_I This 32.0 31 0.00078 13.8 3.3 55 418-472 131-190 (202)
145 PRK03634 rhamnulose-1-phosphat 32.0 31 0.00078 13.8 3.9 32 49-81 79-110 (274)
146 TIGR02700 flavo_MJ0208 archaeo 32.0 16 0.0004 15.9 0.4 10 460-469 40-49 (237)
147 smart00842 FtsA Cell division 31.3 32 0.0008 13.7 5.2 91 360-453 37-130 (187)
148 pfam08536 Whirly Whirly transc 30.5 32 0.00083 13.6 3.5 68 15-91 56-127 (139)
149 PRK04338 N(2),N(2)-dimethylgua 30.2 33 0.00083 13.6 2.3 43 232-274 89-131 (376)
150 COG3705 HisZ ATP phosphoribosy 30.0 33 0.00084 13.6 3.4 79 646-739 266-347 (390)
151 TIGR01124 ilvA_2Cterm threonin 30.0 27 0.00069 14.2 1.4 155 110-308 75-257 (508)
152 pfam08676 MutL_C MutL C termin 29.7 33 0.00085 13.6 3.7 59 398-464 52-112 (142)
153 PTZ00031 ribosomal protein L2; 29.2 34 0.00087 13.5 8.5 43 45-88 119-161 (330)
154 pfam09866 DUF2093 Uncharacteri 28.7 35 0.00088 13.4 2.0 19 82-100 2-20 (42)
155 TIGR02045 P_fruct_ADP ADP-spec 28.6 20 0.00052 15.1 0.5 27 498-524 96-123 (466)
156 pfam05339 DUF739 Protein of un 28.6 12 0.0003 16.8 -0.7 19 337-355 42-60 (69)
157 TIGR01792 urease_alph urease, 27.8 36 0.00091 13.3 1.7 79 664-751 500-594 (605)
158 TIGR02342 chap_CCT_delta T-com 27.7 17 0.00043 15.6 -0.0 122 405-543 296-429 (526)
159 pfam02311 AraC_binding AraC-li 27.7 36 0.00092 13.3 4.9 107 260-380 9-115 (134)
160 PRK09310 aroDE bifunctional 3- 27.7 36 0.00092 13.3 1.7 51 417-471 250-300 (477)
161 COG1606 ATP-utilizing enzymes 27.6 36 0.00092 13.3 4.9 176 326-508 43-246 (269)
162 TIGR01686 FkbH FkbH domain; In 27.4 27 0.00069 14.2 1.0 38 332-373 84-123 (337)
163 TIGR02280 PaaB1 phenylacetate 27.3 36 0.00091 13.4 1.6 25 160-184 11-37 (259)
164 PRK10296 DNA-binding transcrip 26.8 37 0.00094 13.2 1.6 45 259-309 26-70 (271)
165 TIGR01241 FtsH_fam ATP-depende 26.1 35 0.0009 13.4 1.4 39 130-169 151-211 (505)
166 PRK12271 rps10p 30S ribosomal 26.1 38 0.00098 13.1 4.3 10 373-382 16-25 (102)
167 KOG0456 consensus 25.9 39 0.00098 13.1 2.3 23 707-730 502-524 (559)
168 COG3376 HoxN High-affinity nic 25.7 19 0.00047 15.4 -0.1 44 264-333 61-104 (342)
169 PRK10119 hypothetical protein; 25.3 40 0.001 13.0 1.6 13 455-467 92-104 (231)
170 KOG0358 consensus 25.2 40 0.001 13.0 2.0 39 418-463 322-360 (534)
171 PRK02910 light-independent pro 25.1 28 0.00073 14.1 0.8 24 414-437 168-193 (524)
172 PRK00095 mutL DNA mismatch rep 25.0 40 0.001 13.0 3.2 21 246-268 167-187 (612)
173 COG1171 IlvA Threonine dehydra 24.9 40 0.001 13.0 1.9 217 110-347 82-324 (347)
174 CHL00076 chlB photochlorophyll 24.9 30 0.00077 13.8 0.9 23 414-436 173-197 (510)
175 PHA02512 minor structural prot 24.7 18 0.00046 15.5 -0.3 42 721-762 773-819 (844)
176 TIGR02939 RpoE_Sigma70 RNA pol 24.7 29 0.00074 14.0 0.7 56 496-555 82-137 (192)
177 TIGR01458 HAD-SF-IIA-hyp3 HAD- 24.6 36 0.00093 13.3 1.2 21 228-248 180-200 (258)
178 cd00153 RalGDS_RA This CD repr 24.5 41 0.001 12.9 2.8 35 327-361 17-51 (87)
179 pfam11548 Receptor_IA-2 Protei 24.3 41 0.0011 12.9 5.0 69 727-803 13-83 (91)
180 pfam11829 DUF3349 Protein of u 24.0 42 0.0011 12.9 2.5 63 411-507 28-90 (97)
181 TIGR01647 ATPase-IIIA_H plasma 24.0 28 0.00073 14.0 0.6 268 204-511 186-566 (835)
182 PRK09295 selenocysteine lyase; 24.0 42 0.0011 12.9 4.4 30 766-799 377-406 (406)
183 TIGR00003 TIGR00003 copper ion 22.9 44 0.0011 12.7 1.8 13 18-30 51-63 (66)
184 PRK11161 fumarate/nitrate redu 22.9 44 0.0011 12.7 2.6 55 370-433 154-210 (235)
185 PRK12354 carbamate kinase; Rev 22.8 44 0.0011 12.7 3.8 56 410-465 119-174 (302)
186 KOG0971 consensus 22.2 45 0.0011 12.6 3.6 54 73-126 22-75 (1243)
187 COG1458 Predicted DNA-binding 22.1 45 0.0012 12.6 2.9 43 422-464 57-101 (221)
188 TIGR02824 quinone_pig3 putativ 21.8 34 0.00086 13.5 0.6 17 153-169 28-45 (334)
189 TIGR03676 aRF1/eRF1 peptide ch 21.8 46 0.0012 12.6 1.6 85 302-402 136-223 (403)
190 TIGR00658 orni_carb_tr ornithi 21.1 47 0.0012 12.5 2.7 91 216-325 95-195 (341)
191 TIGR01246 dapE_proteo succinyl 21.0 48 0.0012 12.5 2.4 132 5-162 2-164 (383)
192 COG1867 TRM1 N2,N2-dimethylgua 20.8 48 0.0012 12.4 3.0 25 251-275 109-133 (380)
193 TIGR01490 HAD-SF-IB-hyp1 HAD-s 20.8 48 0.0012 12.5 1.2 61 455-515 114-181 (204)
194 PRK04011 peptide chain release 20.6 48 0.0012 12.4 1.5 84 302-401 143-229 (409)
195 PRK00029 hypothetical protein; 20.4 11 0.00028 17.0 -2.1 63 313-384 246-312 (487)
196 PRK12342 putative electron tra 20.3 49 0.0013 12.4 4.4 126 665-799 122-254 (254)
197 PHA02241 hypothetical protein 20.1 50 0.0013 12.3 3.3 133 662-804 30-170 (182)
198 COG1904 UxaC Glucuronate isome 20.0 37 0.00096 13.2 0.5 13 414-426 258-270 (463)
No 1
>PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=100.00 E-value=0 Score=1889.88 Aligned_cols=783 Identities=41% Similarity=0.685 Sum_probs=737.6
Q ss_pred CCCCHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEECC-CCCCCEEEEEEEEEEECCCCC-CCEEEEECCCCCEEEEECC
Q ss_conf 97786799884789998899999987458604211124-656874899999975657998-7089997599957989754
Q gi|254780316|r 1 MKFTLSWLKDHLDTDVSLEKICDTLTSIGLEVEKVDNR-EALSPFTIVKVLSVERNPDLD-CAILRIDTGKHQEIQVVCG 78 (805)
Q Consensus 1 M~is~~WL~~~v~~~~~~~~l~~~lt~~G~EVe~i~~~-~~~~~vvvg~v~~~~~hP~ad-l~v~~Vd~g~~~~~~Ivcg 78 (805)
||||++||+||+|+++|+++|+++||++|+|||+++.. ..+++||||+|++|+|||||| |++|+||+|+ +.+|||||
T Consensus 1 M~vs~~WL~e~v~~~~~~~~l~~~Lt~~G~EVE~v~~~~~~~~~vvvg~Vl~~~~HP~adkL~vc~Vd~G~-~~~qIVcG 79 (786)
T PRK00629 1 MKFSLSWLKELVDTDISPDELAEALTMIGLEVEGVEPLAPGLSGVVVGKVLECEKHPNADKLRVCQVDVGD-ELLQIVCG 79 (786)
T ss_pred CCCCHHHHHHHCCCCCCHHHHHHHHHHCCEEEEEEEECCCCCCCEEEEEEEEEEECCCCCCEEEEEEEECC-EEEEEECC
T ss_conf 94787999977299999999999986543621267725667787699999997667998712799998399-68889879
Q ss_pred CCCCCCCCEEEEECCCCEECCCCEEEEEEHHCCCCCCCHHHHHHHCCCCCCCCCEEEECCCCCCCCCHHHHHCCCCEEEE
Q ss_conf 83455897898966877925898398331205865054541188769985477507816888888455887088855999
Q gi|254780316|r 79 APNVRVGLLGVWAPPGSCIPENNMIVNVRKIRGIESTGMMCSEKELMLSDDSASIMELPIDAPVGGRLSDYLELSDPIID 158 (805)
Q Consensus 79 A~Nv~~g~~V~~A~~Ga~lp~g~~~i~~~~irGv~S~GMlCS~~ELgl~~~~~gI~~l~~~~~~G~~~~~~l~l~D~i~e 158 (805)
||||++|++||||+|||+|| ||++||++||||++|+|||||++||||+++|+|||+||+++++|+++.+|++++|+|||
T Consensus 80 A~Nv~~G~~V~vA~~Ga~lp-~~~~Ik~~kirGv~S~GMlCS~~ELGl~~~~~GI~~l~~~~~~G~~~~~~l~l~D~iie 158 (786)
T PRK00629 80 APNVRAGLKVPVALPGAVLP-GGFKIKKAKLRGVESEGMLCSASELGLSDDHDGIIELPEDAPLGTDIREYLGLDDPVIE 158 (786)
T ss_pred CCCCCCCCEEEEECCCCCCC-CCCEEEEEEECCEEECCEECCHHHCCCCCCCCCEEECCCCCCCCCCHHHHHCCCCEEEE
T ss_conf 86225899999977798968-99789764457703365564987849997779859858999888488997289975999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHCCCCCCCCCCCCHHHHHHH
Q ss_conf 87087857665557899987764115666655456677777774158984073111233201123224556637787888
Q gi|254780316|r 159 VSLTPNRSDCIGVRGIALDLVAAGLGKLKEINISCPLSSESIPLEIKFDLDDSSLCKGFAMCCVKGVRNNVAPNWMRQRL 238 (805)
Q Consensus 159 i~iTpNR~D~ls~~GiARElaa~~~~~l~~~~~~~~~~~~~~~~~i~v~i~~~~~c~~y~~~~i~~v~~~~SP~wl~~rL 238 (805)
++|||||||||||+|+|||+||+++.+++.|...... .....++++++++++||+|.+++|+||++++||+|||.||
T Consensus 159 i~iTpNR~D~ls~~GiARElaa~~~~~l~~~~~~~~~---~~~~~~~v~i~~~~~c~~y~~~~i~~v~~~~SP~wl~~rL 235 (786)
T PRK00629 159 ISLTPNRADCLSVRGIARELAAAYGLPLKLPEIEPVP---ATSDDLPVEVEDPEACPRYAGRVIKGVKNAPSPLWLQERL 235 (786)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC---CCCCCCEEEEECCCCCCCEEEEEEECCCCCCCHHHHHHHH
T ss_conf 8737974777788999999999859987786656566---6667744898566788737589997853478959999999
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEECCCCCCHHHHHHHCCCCCCCCEEEECCCCCCCCHHHCC
Q ss_conf 86401321039999989998608700000102233326886235543114554201124543200002567631001113
Q gi|254780316|r 239 KAVGLRSISALVDITNYVSLDRGYPSHVFDASRISDVLTVRRACSGEKILALDNQEYDLSPDNVVIASDGRIQSIAGIIG 318 (805)
Q Consensus 239 ~~~Gir~inniVDitNyvmle~GqPlHafD~dki~~~i~vr~a~~~E~~~~Ld~~e~~L~~~~lvI~d~~~~ialaGImG 318 (805)
.++|+|||||+||||||||||+||||||||+|||+++|+||+|++||+|+||||++|+|++++|||||+++|+|||||||
T Consensus 236 ~~~Gir~iNniVDitNyvmle~GqPlHafD~dki~~~i~Vr~a~~~E~~~tLd~~e~~L~~~~lvI~d~~~~ialAGVmG 315 (786)
T PRK00629 236 RRAGIRPINNLVDITNYVMLELGQPLHAFDLDKIKGGIVVRRAKEGEKLVTLDGKERTLDEDDLVIADDDKPLALAGVMG 315 (786)
T ss_pred HHCCCCCCCHHHHHHHHHHHHHCCCCEEECCHHCCCCEEEEECCCCCEEEEECCCEEECCCCCEEEEECCCCCEEEEEEC
T ss_conf 97598551258889999999849413588723348978999768994578644845752788589993898534635706
Q ss_pred CCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECC
Q ss_conf 55312013672699997157878887788761654015544134553013588999888752123345556525874135
Q gi|254780316|r 319 GKHAGCDDNTTDVLVEVALWDPINIARSGKNLGIITDSRYRFERGVDLQGMIPVLKHIVSLILSLCGGTASDICIARNIT 398 (805)
Q Consensus 319 g~~s~v~~~T~~illEsA~F~p~~Ir~tar~l~l~TdaS~RfERgvd~~~~~~al~r~~~Li~e~~gg~~~~~~~~~~~~ 398 (805)
|.+|+|+++||+||||||||+|.+||+|||+|+|+||||||||||+||+++..|++||++||.++|||++++..+.+..+
T Consensus 316 g~~s~v~~~T~~illEsA~F~p~~Ir~tsr~l~l~TdaS~RfERGvdp~~~~~al~ra~~Li~e~~gg~~~~~~~~~~~~ 395 (786)
T PRK00629 316 GEDSEVTEDTTNVLLEAAYFDPLAIRKTARRLGLHTDASYRFERGVDPALTVEALERATALILELCGGEVSPVVDAGSEP 395 (786)
T ss_pred CCCCEEECCCCEEEEEECEECHHHHHHHHHHHCCCCHHEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCC
T ss_conf 77633414750599995669979999999984999601578735899899999999999999987398140027704678
Q ss_pred CCCCCEECCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 54310000431133331134587899999998402221034562366403454334402567676765352334667655
Q gi|254780316|r 399 YKPRKIVFMNSEVKRLSGIDVPIEDSLRILERLGFSVIGEYDKFEVSVPSWRQDVEEKADLVEEILRIYGVDQIKSEPLP 478 (805)
Q Consensus 399 ~~~~~I~l~~~~i~~ilG~~i~~~ei~~iL~~Lgf~v~~~~~~~~V~vPs~R~DI~~e~DLiEEIaRiyGYdnIp~~~l~ 478 (805)
.++++|.++.++++++||++|+.++|.++|++|||+++.++++|.|+||+||+||++|+||||||+|+|||||||++++.
T Consensus 396 ~~~~~I~l~~~~i~~ilG~~i~~~ei~~iL~~Lgf~v~~~~~~~~v~vPs~R~DI~~e~DLiEEIaRiyGYdnIp~~~~~ 475 (786)
T PRK00629 396 TLPATITLRLERINRLLGTEIPKEEVERILTRLGFKVDGDGESLTVTVPSYRFDIEIEADLVEEVARIYGYDNIPSTPPE 475 (786)
T ss_pred CCCCEEEECHHHHHHHHCCCCCHHHHHHHHHHCCCEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC
T ss_conf 88816995899999872887799999999997499998348518998589776668886399999988180437775776
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCHHHHHHHH
Q ss_conf 44345767899889546789887877877402321004825765520000000024677643210151221106776432
Q gi|254780316|r 479 LTQVEDKRNLSLQQSRTRYVKRVLASRAMMEVVNWSFISKEQSVLFGGGQRELEILNPISADMSNMRTSLLPGLLKATGR 558 (805)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~i~l~NPlS~e~s~lR~SLlp~LL~~~~~ 558 (805)
.+. ..+..+..+.+.+++|+.|+++||+|++||||++++.++.|+..++.++|.||+|+|+++||+||+||||+++++
T Consensus 476 ~~~--~~~~~~~~~~~~~~ir~~L~~~Gf~EvitySf~s~~~~~~~~~~~~~v~l~NPls~e~s~lR~SLlp~LL~~~~~ 553 (786)
T PRK00629 476 AKL--PAGELTEAQKRRRRVRRALAARGYQEAITYSFVSPEVADLFGLGEDALKLLNPISSELSVMRTSLLPGLLEALAY 553 (786)
T ss_pred CCC--CCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 555--788899899999999999997898424136667979998627887756853754212688888779999998998
Q ss_pred HCCCCCCHHHHHHHCCCCCCCCCCCCCEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCE
Q ss_conf 10158611345430244447775443100022103543101246202345443333146888753111111101453330
Q gi|254780316|r 559 NVDRAIADFAIFEVSHVYENDTPEGQKYMAAGIRKGSSGIEGSGRLWSDKSEERCRFVDLFDAKADALSVIEPFVSLDSL 638 (805)
Q Consensus 559 N~~r~~~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~df~dlKg~v~~ll~~l~~~~~~ 638 (805)
|++|+++++++||+|+||.++. .|...++++ .+|..+...|..+.+.+|||++||++++++..++....+
T Consensus 554 N~~r~~~~i~lFEiG~vf~~~~--~E~~~La~~--------~~G~~~~~~w~~~~~~~dffdlKg~ve~ll~~lgi~~~~ 623 (786)
T PRK00629 554 NQNRKNKDVALFEIGLVFLPGP--REPLHLAGV--------LTGLRLNESWGGKGRPVDFFDAKGDLEALLGALGLLADV 623 (786)
T ss_pred HHHCCCCCEEEEEEEEEECCCC--CHHEEEEEE--------EECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCE
T ss_conf 8627998767998754389998--446599999--------989877666566676468999999999999973998435
Q ss_pred EEECCCCCCCCCCCEEEEEECCEEEEEEEEEECHHHHHHCCCCCCEEEEEEEHHHHHHHHHCCCCCCCCCCCCCCCCCEE
Q ss_conf 33058865678981699998792999998547789999668799789999878762354520245663136898887200
Q gi|254780316|r 639 RFESGAPSWYHPGRSGIIKTSAEIVLGYFGEFHPNILDFFGLSNPICGFEVYLDSIPISQKKRTKTKKVVHLSSLHPVKR 718 (805)
Q Consensus 639 ~~~~~~~~~~hPgrsa~I~~~gk~iiG~iG~ihP~i~~~~~i~~~v~~~EI~ld~L~~~~~~~~~~~~~~~~s~fP~v~R 718 (805)
++...++++|||||||.|+++|+.+ |++|+|||.++++|+|+.+||+|||+|+.|.... ...++|+++|+||+++|
T Consensus 624 ~~~~~~~~~~hPgrsA~I~~~~~~I-G~iG~lhP~i~~~~~i~~~v~~~Ei~l~~l~~~~---~~~~~~~~~skfP~v~R 699 (786)
T PRK00629 624 EFVPAEHPALHPGRSAAIYLGGKVI-GFIGQLHPEVLKKYDLPGRTYVFELDLDALLERK---KKKPPAKPISKFPAVRR 699 (786)
T ss_pred EEECCCCCCCCCCCEEEEEECCEEE-EEEEEECHHHHHHCCCCCCEEEEEEEHHHHHHHH---HCCCCCCCCCCCCCCCE
T ss_conf 8811788776787579999999899-9999998999997397998899999989944313---04776788898997024
Q ss_pred EEEEEECCCCCHHHHHHHHHHCC-CCEEEEEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 18999668879999999997111-00357698987636779988426999999847798889999999999999999999
Q gi|254780316|r 719 DLAFIVDQHIPAGTLVNIIKNVD-RLIDDVTVFDVFQGKSLGEGKKSVAIQVLIQPLKDTFRDDDIRILMDRIVENVVKK 797 (805)
Q Consensus 719 Dls~iv~~~v~~~~I~~~i~~~~-~ll~~v~lfDvY~g~~i~~gkkSla~rl~fqs~~kTLtd~EI~~i~~~ii~~l~~k 797 (805)
||||++|+++++++|+++|++++ ++|+++++||+|+|+++++||||+||||+||+.+|||||+||++++++|++.|+++
T Consensus 700 Dla~vvd~~v~~~~I~~~I~~~~~~ll~~v~lfDvY~g~~i~~gkKSla~rl~fq~~~kTLtd~EI~~~~~~ii~~l~~~ 779 (786)
T PRK00629 700 DIALVVDEDVPAAEIVKAIKKAGGKLLESVRLFDVYEGKGLPEGKKSLAISLTLQDPERTLTDEEINAAVDKIVAALEEK 779 (786)
T ss_pred EEEEEECCCCCHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 69999889998999999998629332628879998679998999658999999999899979999999999999999997
Q ss_pred HCCEECC
Q ss_conf 5119816
Q gi|254780316|r 798 TNAVLRS 804 (805)
Q Consensus 798 ~ga~LRs 804 (805)
|||+||.
T Consensus 780 ~~a~LRg 786 (786)
T PRK00629 780 FGATLRG 786 (786)
T ss_pred HCCEECC
T ss_conf 4928379
No 2
>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit; InterPro: IPR004532 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (see IPR002319 from INTERPRO). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta. In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases . This family describes the beta subunit. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps (see also IPR004531 from INTERPRO). This family represents the subfamily that includes the beta subunit from bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the N-terminal.; GO: 0000166 nucleotide binding, 0004826 phenylalanine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006432 phenylalanyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=1800.46 Aligned_cols=797 Identities=37% Similarity=0.602 Sum_probs=729.5
Q ss_pred CCCCHHHHHHHCCC-CC-CHHHHHHHHHHCC-CEEEEEECCC-CCCC--EEEEEEEEEEECCCCC-CCEEEEECCCC-CE
Q ss_conf 97786799884789-99-8899999987458-6042111246-5687--4899999975657998-70899975999-57
Q gi|254780316|r 1 MKFTLSWLKDHLDT-DV-SLEKICDTLTSIG-LEVEKVDNRE-ALSP--FTIVKVLSVERNPDLD-CAILRIDTGKH-QE 72 (805)
Q Consensus 1 M~is~~WL~~~v~~-~~-~~~~l~~~lt~~G-~EVe~i~~~~-~~~~--vvvg~v~~~~~hP~ad-l~v~~Vd~g~~-~~ 72 (805)
|+||++||++|+++ ++ |+++||++||++| +|||.|..+. ..++ ||||+|++++|||||| |+|||||+|++ +.
T Consensus 1 M~~S~~WL~~~~~~~~~~s~~ei~~~L~~~G~~EVE~v~~~~~~~~~~~vvvG~v~~~~~HP~adkL~vc~V~~G~~e~~ 80 (848)
T TIGR00472 1 MKISLKWLREYVPLSEIDSLEEIAEKLTSIGVLEVEEVEPFKKSLKGRYVVVGKVLEVEPHPNADKLKVCKVDIGEKEEP 80 (848)
T ss_pred CCCCHHHHHHHCCCCCCCCHHHHHHHHHHCCEEEEEEEEECCCCCCCCEEEEEEEEEEECCCCCCCCEEEEEEECCCEEE
T ss_conf 95656889974275567898999999862770566200103655478558999999861388888856899887796067
Q ss_pred EEEECCCCCCCCCCEEEEECCCCEECCCC---EEEEEEHHCCCCCCCHHHHHHHCCCCCC-----CCCEEEEC--CCCCC
Q ss_conf 98975483455897898966877925898---3983312058650545411887699854-----77507816--88888
Q gi|254780316|r 73 IQVVCGAPNVRVGLLGVWAPPGSCIPENN---MIVNVRKIRGIESTGMMCSEKELMLSDD-----SASIMELP--IDAPV 142 (805)
Q Consensus 73 ~~IvcgA~Nv~~g~~V~~A~~Ga~lp~g~---~~i~~~~irGv~S~GMlCS~~ELgl~~~-----~~gI~~l~--~~~~~ 142 (805)
+||||||+||++|++||||++||+|| ++ ++||++||||++|+|||||+.||||+++ ++|||+|| +++++
T Consensus 81 ~qIVcGA~Nv~~g~~V~VA~~GA~L~-~~~~~~~Ik~~klRG~~S~GMlCS~~ELGl~~~~~~e~~dgi~~L~~~~~~~~ 159 (848)
T TIGR00472 81 LQIVCGAPNVEAGDKVAVALPGAKLP-NGEEELKIKKSKLRGVESEGMLCSESELGLEEESLTEDSDGIIVLDEAEDAPL 159 (848)
T ss_pred EEEEECCCCCCCCCEEEEECCCCEEE-CCCCEEEEEHHHCCCCCCCCCEECHHHCCCCCCCCCCCCCCEEEECCCCCCCC
T ss_conf 88862765401478859960485740-89721578543437535665042464628631023222564688177688865
Q ss_pred CCCHHHHHCCCCE-EEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC--CCCCCCEEEEEEECCCHHHHHHH
Q ss_conf 8455887088855-99987087857665557899987764115666655456677--77777415898407311123320
Q gi|254780316|r 143 GGRLSDYLELSDP-IIDVSLTPNRSDCIGVRGIALDLVAAGLGKLKEINISCPLS--SESIPLEIKFDLDDSSLCKGFAM 219 (805)
Q Consensus 143 G~~~~~~l~l~D~-i~ei~iTpNR~D~ls~~GiARElaa~~~~~l~~~~~~~~~~--~~~~~~~i~v~i~~~~~c~~y~~ 219 (805)
|+++.+||++||. +|||+|||||||||||+||||||||++++ |+.|....+.. .........+.+++.+.||+|.+
T Consensus 160 G~~~~~~L~ldd~~~~e~~iTpNR~DclS~~G~ARElAa~~~~-l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 238 (848)
T TIGR00472 160 GTDIAEYLGLDDDTVIEISITPNRGDCLSILGIARELAALFDL-LKTPVPFEPETTETETIDEGFKVEIEDEEACPRYLG 238 (848)
T ss_pred CCCHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCC-CCCCCCCCCCCCHHEECCCCCCEEECCCCCCCCEEE
T ss_conf 6777887146880799964389835776488999999987242-565543354410000025544212135010781468
Q ss_pred CCCCCCCCCC-CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCC-E-EEEEECCCCCCHHHHHHHCCC
Q ss_conf 1123224556-637787888864013210399999899986087000001022333-2-688623554311455420112
Q gi|254780316|r 220 CCVKGVRNNV-APNWMRQRLKAVGLRSISALVDITNYVSLDRGYPSHVFDASRISD-V-LTVRRACSGEKILALDNQEYD 296 (805)
Q Consensus 220 ~~i~~v~~~~-SP~wl~~rL~~~Gir~inniVDitNyvmle~GqPlHafD~dki~~-~-i~vr~a~~~E~~~~Ld~~e~~ 296 (805)
++|+||++++ ||+|||.||+++|+|||||||||||||||++||||||||+|||+| . |+||.|++||+|++|||++|.
T Consensus 239 ~~i~~v~~~~~sP~w~~~rL~~~G~r~~N~~VDitNYv~~~~GQPlHafD~~~~~g~~si~Vr~ak~~e~~~~Ld~~e~~ 318 (848)
T TIGR00472 239 RVIKGVKVKPQSPLWLKERLRASGIRPINNIVDITNYVMLELGQPLHAFDADKIEGSNSIVVRSAKEGESFTTLDGKERE 318 (848)
T ss_pred EEEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHCCHHHHCCCCEEEEEEECCCCEEEECCCEEEE
T ss_conf 99743531568988999999964898332335267899998568222212456338845999983367143304653466
Q ss_pred CCCCCEEEECCC-CCCCCHHHCCCCCCCCCCCC-CEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHCC-CCCCHHHHHHH
Q ss_conf 454320000256-76310011135531201367-2699997157878887788761654015544134-55301358899
Q gi|254780316|r 297 LSPDNVVIASDG-RIQSIAGIIGGKHAGCDDNT-TDVLVEVALWDPINIARSGKNLGIITDSRYRFER-GVDLQGMIPVL 373 (805)
Q Consensus 297 L~~~~lvI~d~~-~~ialaGImGg~~s~v~~~T-~~illEsA~F~p~~Ir~tar~l~l~TdaS~RfER-gvd~~~~~~al 373 (805)
|+++++||+|++ +|+||||||||.+|+|+++| ++|+||||||+|..||+|||+|||+||||||||| |+||+.+..|+
T Consensus 319 L~~~~lvi~d~~~~~~aiaGv~Gg~~s~v~~~tT~~i~lE~A~F~p~~Irk~~~~l~i~t~~s~Rfer~g~D~~~~~~a~ 398 (848)
T TIGR00472 319 LKKGDLVIADDEDKPLAIAGVMGGKESGVTDETTTNIFLESAYFNPESIRKTARRLGISTDSSYRFERTGVDPELTELAL 398 (848)
T ss_pred ECCCCEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEEEEECCHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHH
T ss_conf 53786799828997799985114656532266650699998605778999899883787125233113798888999999
Q ss_pred HHHHHHHCCCCCCC--CCCCEEEEECCCCCCCEECCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCC-
Q ss_conf 98887521233455--565258741355431000043113333113458789999999840222103456236640345-
Q gi|254780316|r 374 KHIVSLILSLCGGT--ASDICIARNITYKPRKIVFMNSEVKRLSGIDVPIEDSLRILERLGFSVIGEYDKFEVSVPSWR- 450 (805)
Q Consensus 374 ~r~~~Li~e~~gg~--~~~~~~~~~~~~~~~~I~l~~~~i~~ilG~~i~~~ei~~iL~~Lgf~v~~~~~~~~V~vPs~R- 450 (805)
+||++||.++|||+ .+.....+..+.++++|.++.++++++||.+++.+++.++|++|||+++..+++|+|+|||||
T Consensus 399 ~~A~~li~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lG~~~~~~~~~~iL~~Lg~~~~~~~~~~~v~vPs~R~ 478 (848)
T TIGR00472 399 DRALNLILELAGGEDVISVVSDVYKEKKKEKKISLRLEKLNKILGTSLSDEEVRDILKRLGFKVEKQKEGLEVTVPSYRF 478 (848)
T ss_pred HHHHHHHHHHCCCCCCCCEEEECCCCCCCCCEEEEEHHHHHHHHCCCCCHHHHHHHHHHCCCEEEECCCEEEEECCCCCC
T ss_conf 99999998505844344015641444565537874189999870855578899999986596243436656984286356
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH---HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 4334402567676765352334667655443457678998895467---8988787787740232100482576552000
Q gi|254780316|r 451 QDVEEKADLVEEILRIYGVDQIKSEPLPLTQVEDKRNLSLQQSRTR---YVKRVLASRAMMEVVNWSFISKEQSVLFGGG 527 (805)
Q Consensus 451 ~DI~~e~DLiEEIaRiyGYdnIp~~~l~~~~~~~~~~~~~~~~~~~---~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~ 527 (805)
+||++++||||||+|+||||||+++|+.........+ ..+...+ ++|.+|+++||+|++||||++++.++.|+..
T Consensus 479 ~Di~~~~Dl~EEi~R~yGyd~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~G~~E~itYsl~~~~~~~~~~~~ 556 (848)
T TIGR00472 479 HDIEIEEDLIEEIARIYGYDNIEAEPLSVSSKNNKNN--ENQLLLKFLKKLRKLLVGLGLNEVITYSLVSKEKLEKFNFP 556 (848)
T ss_pred CCCCCCCCHHEEHHHHCCCCCCCCCCCCCCCCCCCCC--CHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHCCC
T ss_conf 6756252121001324130001034532110244442--04578899999999998489857773013887999871687
Q ss_pred H-H----HCCCCCCCCCCCCCCCCHHHCHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCC-CCCCEEHHHHCCCCCCCCCC
Q ss_conf 0-0----0002467764321015122110677643210158611345430244447775-44310002210354310124
Q gi|254780316|r 528 Q-R----ELEILNPISADMSNMRTSLLPGLLKATGRNVDRAIADFAIFEVSHVYENDTP-EGQKYMAAGIRKGSSGIEGS 601 (805)
Q Consensus 528 ~-~----~i~l~NPlS~e~s~lR~SLlp~LL~~~~~N~~r~~~~i~lFEiG~Vf~~~~~-~~~~~~~~~~~~~~~~~~~~ 601 (805)
. . .++|.||+|+|+++||+||+||||++++||++|++++++|||+|+||.++.. .++ ......+...++...+
T Consensus 557 ~~~~~~~~~~i~NP~s~e~~~lR~sL~~sLL~~~~~N~~r~~~~~~lFE~G~~f~~~~~AR~e-~~~~~~e~~~La~~~~ 635 (848)
T TIGR00472 557 KLENLDELVEIKNPLSEERSVLRTSLLPSLLEVLAYNQNRKNKDVKLFEIGKVFAKDGKARGE-EDEAVKEQLRLAILIS 635 (848)
T ss_pred CCCCCHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCC-HHHHHHHHHHHEEEEE
T ss_conf 778610104515898354788766446889999999986389715899887642688533575-0121234431100240
Q ss_pred CCCCCCCCCC--CCCCCCHHHHHHHHHHHHHHCCCC-C-CE----EEECCCCCCCCCCCEEEEEEC-CEEEEEEEEEECH
Q ss_conf 6202345443--333146888753111111101453-3-30----330588656789816999987-9299999854778
Q gi|254780316|r 602 GRLWSDKSEE--RCRFVDLFDAKADALSVIEPFVSL-D-SL----RFESGAPSWYHPGRSGIIKTS-AEIVLGYFGEFHP 672 (805)
Q Consensus 602 g~~~~~~~~~--~~~~~df~dlKg~v~~ll~~l~~~-~-~~----~~~~~~~~~~hPgrsa~I~~~-gk~iiG~iG~ihP 672 (805)
|......|.. +...+|||++||+++++|..++.. . .+ .+....++.||||++|.|+++ ++.+ |+||+|||
T Consensus 636 G~~~~~~w~~~~~~~~~df~~~Kg~ve~~L~~l~~~~~~~~~~~~~~~~~~~~~~hP~~~a~i~~~~~~~~-G~iG~~hp 714 (848)
T TIGR00472 636 GEKEPSSWNSKKKEEKVDFYDLKGIVESLLELLGLSESAAYEVLDFKEAAENEELHPGQSAEIYLKSGKLI-GFIGEVHP 714 (848)
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEECCEEE-EEEEEECH
T ss_conf 44566666001576656788999999999997086555302222113330565568873279998268289-99998855
Q ss_pred HHHHHCCCCCCEEEEEEEHHHHHHHHHCCCC-CCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHCC-CCEEEEEEE
Q ss_conf 9999668799789999878762354520245-66313689888720018999668879999999997111-003576989
Q gi|254780316|r 673 NILDFFGLSNPICGFEVYLDSIPISQKKRTK-TKKVVHLSSLHPVKRDLAFIVDQHIPAGTLVNIIKNVD-RLIDDVTVF 750 (805)
Q Consensus 673 ~i~~~~~i~~~v~~~EI~ld~L~~~~~~~~~-~~~~~~~s~fP~v~RDls~iv~~~v~~~~I~~~i~~~~-~ll~~v~lf 750 (805)
+++++|+|+.++|+|||+|+.|........+ .++|+++|+||+++|||||++|+++++++|++.+++.+ ++|++|+||
T Consensus 715 ~~~~~~~l~~~~~~~El~l~~l~~~~~~~~~~~~~~~~~s~~P~~~RDi~~~~~~~~~~~~i~~~~kk~~~~~l~~v~lf 794 (848)
T TIGR00472 715 EIAKEYDLKEPTFVAELDLDRLLESLKKSRKLVPKYRPISKFPAVTRDISFLVPKDVPVNEIIKLIKKSGLELLEEVELF 794 (848)
T ss_pred HHHHHHCCCCCEEEEEEEHHHHHHHHHHHCCEEEEEECCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEEEE
T ss_conf 89975079863599987278888652242211456532677885202288994587778999999974686689999999
Q ss_pred EEEECCCCC-CCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCEEC
Q ss_conf 876367799-88426999999847798889999999999999999999511981
Q gi|254780316|r 751 DVFQGKSLG-EGKKSVAIQVLIQPLKDTFRDDDIRILMDRIVENVVKKTNAVLR 803 (805)
Q Consensus 751 DvY~g~~i~-~gkkSla~rl~fqs~~kTLtd~EI~~i~~~ii~~l~~k~ga~LR 803 (805)
|+|+|++++ +|+||+||||+|||.+|||+|+||++++++|++.|+++|||+||
T Consensus 795 DvY~g~~~~~~~~~S~~~~~~l~~~~~TL~~~~i~~~~~k~~~~L~~~~~~~lR 848 (848)
T TIGR00472 795 DVYEGKNIGKEGKKSLALRLVLRDKERTLTDEEINKIVEKVLNLLKEKLGAELR 848 (848)
T ss_pred EEEECCCCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCEEC
T ss_conf 998468768887058999999986888888789999999999999998184609
No 3
>CHL00192 syfB phenylalanyl-tRNA synthetase beta chain; Provisional
Probab=100.00 E-value=0 Score=1456.71 Aligned_cols=676 Identities=28% Similarity=0.464 Sum_probs=601.3
Q ss_pred CCCCHHHHHHHCCCC-CCHHHHHHHHHHCCCEEEEEECCCCCCCEEEEEEEEEEECCCCCCCEEEEECCCCCEEEEECCC
Q ss_conf 977867998847899-9889999998745860421112465687489999997565799870899975999579897548
Q gi|254780316|r 1 MKFTLSWLKDHLDTD-VSLEKICDTLTSIGLEVEKVDNREALSPFTIVKVLSVERNPDLDCAILRIDTGKHQEIQVVCGA 79 (805)
Q Consensus 1 M~is~~WL~~~v~~~-~~~~~l~~~lt~~G~EVe~i~~~~~~~~vvvg~v~~~~~hP~adl~v~~Vd~g~~~~~~IvcgA 79 (805)
|+||+||||+|++++ +++++|+++||++|+|||++++..
T Consensus 1 m~~~~~wl~~~~~~~~~~~~~l~~~lt~~g~~~e~~~~~~---------------------------------------- 40 (702)
T CHL00192 1 MKVSLNWLKELVDIENIDFDTLVDKLSLAGFEVEDIERLS---------------------------------------- 40 (702)
T ss_pred CCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCHHHHC----------------------------------------
T ss_conf 9476899998638779998999998744476533102221----------------------------------------
Q ss_pred CCCCCCCEEEEECCCCEECCCCEEEEEEHHCCCCCCCHHHHHHHCCCCCCCCCEEEECCCCCCCCCHHHHHCCCCEEEEE
Q ss_conf 34558978989668779258983983312058650545411887699854775078168888884558870888559998
Q gi|254780316|r 80 PNVRVGLLGVWAPPGSCIPENNMIVNVRKIRGIESTGMMCSEKELMLSDDSASIMELPIDAPVGGRLSDYLELSDPIIDV 159 (805)
Q Consensus 80 ~Nv~~g~~V~~A~~Ga~lp~g~~~i~~~~irGv~S~GMlCS~~ELgl~~~~~gI~~l~~~~~~G~~~~~~l~l~D~i~ei 159 (805)
.||+||+||||
T Consensus 41 ---------------------------------------------------------------------~lgldD~vlei 51 (702)
T CHL00192 41 ---------------------------------------------------------------------ILGEKDMILDV 51 (702)
T ss_pred ---------------------------------------------------------------------CCCCCCEEEEE
T ss_conf ---------------------------------------------------------------------06899868997
Q ss_pred EECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHCCCCCCCCCCCCHHHHHHHH
Q ss_conf 70878576655578999877641156666554566777777741589840731112332011232245566377878888
Q gi|254780316|r 160 SLTPNRSDCIGVRGIALDLVAAGLGKLKEINISCPLSSESIPLEIKFDLDDSSLCKGFAMCCVKGVRNNVAPNWMRQRLK 239 (805)
Q Consensus 160 ~iTpNR~D~ls~~GiARElaa~~~~~l~~~~~~~~~~~~~~~~~i~v~i~~~~~c~~y~~~~i~~v~~~~SP~wl~~rL~ 239 (805)
++||||||||||+|+|||+||+++.+++.|...........+. ..+...+...||+|.+++|+||++++||+|||.||.
T Consensus 52 ~iTPNR~DclS~~GiARElaa~~~~~l~~p~~~~~~~~~~~~~-~~~~~~~~~~c~~y~~~~i~~v~v~~SP~wl~~rL~ 130 (702)
T CHL00192 52 TSTANRSDSLSIIGLSREISALTNRDLKYKAYKPSIAIFTHKI-TILSSHSLLNCGIYSIVIIDNLRVNDSPLWLQNRLS 130 (702)
T ss_pred EECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC-EEECCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHH
T ss_conf 5598778988889999999997598988856577643346761-230245545787388999878736899799999999
Q ss_pred HHCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCC-------EEEEEECCCCCCHHHHHHHCCCCCCCCEEEECCCCCCC
Q ss_conf 64013210399999899986087000001022333-------26886235543114554201124543200002567631
Q gi|254780316|r 240 AVGLRSISALVDITNYVSLDRGYPSHVFDASRISD-------VLTVRRACSGEKILALDNQEYDLSPDNVVIASDGRIQS 312 (805)
Q Consensus 240 ~~Gir~inniVDitNyvmle~GqPlHafD~dki~~-------~i~vr~a~~~E~~~~Ld~~e~~L~~~~lvI~d~~~~ia 312 (805)
++|+|||||+||||||||||+||||||||+|||++ .|++|.|.+||++++|||++|+|++++|||+|+++|+|
T Consensus 131 ~~Gir~inniVDitNYvmle~GqPlHAfD~dki~~~~~~~~~~i~vr~a~~~e~~~~Ld~~e~~L~~~~lvI~d~~~~ia 210 (702)
T CHL00192 131 SSGIKPLNLLVDISNYIMLKWGQPINIFDLDKISSVPIQPSLLILSNFNLGKSSHFILDNPNIKLSSEILLVQYNDNPIS 210 (702)
T ss_pred HCCCCCCCCCCCHHHHHHHHCCCCCEEECHHHHCCCCCCCCEEEEEEECCCCCEEEECCCCEEECCCCCEEEEECCEEEE
T ss_conf 86998654334666633343088618973889368766664048997057985588238867854888779981992588
Q ss_pred CHHHCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCE
Q ss_conf 00111355312013672699997157878887788761654015544134553013588999888752123345556525
Q gi|254780316|r 313 IAGIIGGKHAGCDDNTTDVLVEVALWDPINIARSGKNLGIITDSRYRFERGVDLQGMIPVLKHIVSLILSLCGGTASDIC 392 (805)
Q Consensus 313 laGImGg~~s~v~~~T~~illEsA~F~p~~Ir~tar~l~l~TdaS~RfERgvd~~~~~~al~r~~~Li~e~~gg~~~~~~ 392 (805)
|||||||.+|+|+++||+||||||+|+|.+||+|||+|||+||||||||||+||+.+..|+.||++||.++|||++.+..
T Consensus 211 lAGVmGG~~s~V~~~T~~IllEsA~F~p~~Ir~tar~l~l~tdaS~RfERGvdp~~~~~al~ra~~Li~e~~~g~~~~~~ 290 (702)
T CHL00192 211 IAGIGLNSEIDCDANTKSILIEGAIFSKQVVRKSSRKLGIRTESSIRQEKGLNRDNFLNALYEAISLLGELTFGKIGKTF 290 (702)
T ss_pred ECCEECCCCCEEECCHHHHHHHHEECCHHHHHHHHHHHCCCCHHHEEECCCCCHHHHHHHHHHHHHHHHHHCCCEECCCE
T ss_conf 72060786533505604614544215779989999983677514233246899789999999999999987398442203
Q ss_pred EEEECCCCCCCEECCCCHHHHHHC--------CCCCHHHHHHHHHHHHHHHHCC-CCCCEEEECCCCC-CCCCHHHHHHH
Q ss_conf 874135543100004311333311--------3458789999999840222103-4562366403454-33440256767
Q gi|254780316|r 393 IARNITYKPRKIVFMNSEVKRLSG--------IDVPIEDSLRILERLGFSVIGE-YDKFEVSVPSWRQ-DVEEKADLVEE 462 (805)
Q Consensus 393 ~~~~~~~~~~~I~l~~~~i~~ilG--------~~i~~~ei~~iL~~Lgf~v~~~-~~~~~V~vPs~R~-DI~~e~DLiEE 462 (805)
.....+..++.|.++.++++++|| .+|+.++|.++|++|||++..+ .++|.|+||+||+ ||.+|+|||||
T Consensus 291 ~~~~~~~~~~~i~~~~~~i~~~lG~~~~~~~~~~i~~~~i~~iL~~Lgf~v~~~~~~~~~V~vPs~R~~DI~~e~DLiEE 370 (702)
T CHL00192 291 GYHKLTNISKPINLSKKKIQDILGPIKINGSTRYLSFEEIENILKSLNFKLIYDSLKNWEVIIPSYRQDDIFREIDLIEE 370 (702)
T ss_pred ECCCCCCCCCEEECCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCEEEECCCCCHHHHCCCCHHHHH
T ss_conf 12556777850775899999973976445655568999999999977998995478868998897566664771059999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 67653523346676554434576789988954678988787787740232100482576552000000002467764321
Q gi|254780316|r 463 ILRIYGVDQIKSEPLPLTQVEDKRNLSLQQSRTRYVKRVLASRAMMEVVNWSFISKEQSVLFGGGQRELEILNPISADMS 542 (805)
Q Consensus 463 IaRiyGYdnIp~~~l~~~~~~~~~~~~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~i~l~NPlS~e~s 542 (805)
|||+|||||||++ +|... ..+..+..+.+.+++|+.|+++||+|++||||++++.. .++.++|+||||+|++
T Consensus 371 VaRiyGydnI~~~-~p~~~--~~~~~~~~~~~~~~lr~~L~~~Gf~E~itysf~s~~~~-----~~~~v~l~NPis~e~s 442 (702)
T CHL00192 371 IARLYGFDNFISK-LPLIQ--FDGRLSFLRNFIDKIRSLLRNLGLTELVHYSLVKSYTY-----YKGEIKLYNPLLQDYS 442 (702)
T ss_pred HHHHHCCCCCCCC-CCCCC--CCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHC-----CCCCEEECCCCCHHHH
T ss_conf 9998080336555-78754--67888988999999999999689834775314684445-----6772897087524378
Q ss_pred CCCCHHHCHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCC--CCCEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 0151221106776432101586113454302444477754--43100022103543101246202345443333146888
Q gi|254780316|r 543 NMRTSLLPGLLKATGRNVDRAIADFAIFEVSHVYENDTPE--GQKYMAAGIRKGSSGIEGSGRLWSDKSEERCRFVDLFD 620 (805)
Q Consensus 543 ~lR~SLlp~LL~~~~~N~~r~~~~i~lFEiG~Vf~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~df~d 620 (805)
+||+||+||||+++++|++|++++++|||+|+||..+... ++..+.+++. .|......|..+.+.+|||+
T Consensus 443 ~LR~sLlpgLL~~~~~N~~r~~~~i~lFEiG~vf~~~~~~~~e~~~l~~~~~--------~g~~~~~~w~~~~~~~dFfd 514 (702)
T CHL00192 443 TLRSSLLPGLILAQQYNLKQSNQTIEGFEIGHVFRDNTEKIFETLHLAGGIG--------GGLDIRSSWSEKAQSLNWYE 514 (702)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCHHEEEEEEE--------CCCCCCCCCCCCCCCCCHHH
T ss_conf 8888779999999986153599774289764552688788621122999998--------18866544456677678999
Q ss_pred HHHHHHHHHHHCCCCCC---EEEECCCCCCCCCCCEEEEEECCEEEEEEEEEECHHHHHHCCCCCCEEEEEEEHHHHHHH
Q ss_conf 75311111110145333---033058865678981699998792999998547789999668799789999878762354
Q gi|254780316|r 621 AKADALSVIEPFVSLDS---LRFESGAPSWYHPGRSGIIKTSAEIVLGYFGEFHPNILDFFGLSNPICGFEVYLDSIPIS 697 (805)
Q Consensus 621 lKg~v~~ll~~l~~~~~---~~~~~~~~~~~hPgrsa~I~~~gk~iiG~iG~ihP~i~~~~~i~~~v~~~EI~ld~L~~~ 697 (805)
+||++++++..++.... .......+++|||||||.|+++|+.+ |++|+|||.++++|+|+.+||+|||+|+.|...
T Consensus 515 ~Kg~ve~ll~~l~~~~~~~~~~~~~~~~~~~hPg~sA~I~~~~~~i-G~iG~lhP~v~~~~~l~~~v~~~Eidl~~l~~~ 593 (702)
T CHL00192 515 AKGIVEEFFQRLNLPIVWKKIDSLDQRNKFLHPGRSAEIIYNNENI-GIFGQLHPLLASNLGLNTSTYLFEFDLEKLQAS 593 (702)
T ss_pred HHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCEEEEEECCEEE-EEEEEECHHHHHHCCCCCCEEEEEEEHHHHHHH
T ss_conf 9999999999818984200201455542334877548999999799-999998799998739999779999997994323
Q ss_pred HHCCCC-CCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHCC-CCEEEEEEEEEEECCCCCCCCEEEEEEEEEECCC
Q ss_conf 520245-66313689888720018999668879999999997111-0035769898763677998842699999984779
Q gi|254780316|r 698 QKKRTK-TKKVVHLSSLHPVKRDLAFIVDQHIPAGTLVNIIKNVD-RLIDDVTVFDVFQGKSLGEGKKSVAIQVLIQPLK 775 (805)
Q Consensus 698 ~~~~~~-~~~~~~~s~fP~v~RDls~iv~~~v~~~~I~~~i~~~~-~ll~~v~lfDvY~g~~i~~gkkSla~rl~fqs~~ 775 (805)
...... ...|+|+|+||+++|||||++|+++++++|+++|++++ ++|++|++||+|+|+++|+||||+||||+||+.+
T Consensus 594 ~~~~~~~~~~~~~~skfP~v~RDlalvv~~~v~~~~I~~~I~~~~~~ll~~v~lfDvY~g~~i~~gkKSla~~l~fq~~~ 673 (702)
T CHL00192 594 IEQLNYLNYIIQPYSKYPSITRDLSLIIPKNMTISFLLKLILQFGNNLLESITLFDQYKGKSIGEGKKSLGLRLTYRSNK 673 (702)
T ss_pred HHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCEEEEEEEEEECCC
T ss_conf 44304466656778999970068999989999799999999862924171788999857999899966999999998989
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCEEC
Q ss_conf 8889999999999999999999511981
Q gi|254780316|r 776 DTFRDDDIRILMDRIVENVVKKTNAVLR 803 (805)
Q Consensus 776 kTLtd~EI~~i~~~ii~~l~~k~ga~LR 803 (805)
|||||+||++++++|++.|+++|||+||
T Consensus 674 rTLtd~eV~~~~~kIi~~l~~k~~a~LR 701 (702)
T CHL00192 674 KTLTNKEIDRIQNELQKNLLKQLQLVLR 701 (702)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCEEC
T ss_conf 9969999999999999999998593867
No 4
>COG0072 PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=0 Score=1199.64 Aligned_cols=643 Identities=38% Similarity=0.626 Sum_probs=587.6
Q ss_pred CCCCHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEC-CCHHHHHHHC
Q ss_conf 884558870888559998708785766555789998776411566665545667777777415898407-3111233201
Q gi|254780316|r 142 VGGRLSDYLELSDPIIDVSLTPNRSDCIGVRGIALDLVAAGLGKLKEINISCPLSSESIPLEIKFDLDD-SSLCKGFAMC 220 (805)
Q Consensus 142 ~G~~~~~~l~l~D~i~ei~iTpNR~D~ls~~GiARElaa~~~~~l~~~~~~~~~~~~~~~~~i~v~i~~-~~~c~~y~~~ 220 (805)
+|++..+|++|+|.++|+++||||+||||++|+|||+||.++.+++.++.............+.+.+++ ...||+|.++
T Consensus 1 ~g~~~~~~~~L~d~i~e~~~tpnr~D~ls~~GiarE~aa~~~~~~~~~~~~d~~~~~~~~~~~~v~ie~~~~~~~~~~~~ 80 (650)
T COG0072 1 MPTIVREYLDLDDLIIEISITPNRADCLSMLGIARELAAEYDLKLEFPKIRDLESAEGLARKIFLEIEAGKYACPRYAGR 80 (650)
T ss_pred CCCCHHHHHHHCCCCEECCCCCCHHHHHCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEE
T ss_conf 98522545553453112336778788612255253304541761225776643344455614787334550117765359
Q ss_pred CCCCCC-CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEECCCCCCHHHHHHHCCCCCC
Q ss_conf 123224-5566377878888640132103999998999860870000010223332688623554311455420112454
Q gi|254780316|r 221 CVKGVR-NNVAPNWMRQRLKAVGLRSISALVDITNYVSLDRGYPSHVFDASRISDVLTVRRACSGEKILALDNQEYDLSP 299 (805)
Q Consensus 221 ~i~~v~-~~~SP~wl~~rL~~~Gir~inniVDitNyvmle~GqPlHafD~dki~~~i~vr~a~~~E~~~~Ld~~e~~L~~ 299 (805)
+++|++ +++||+|||.+|..+|+||||++||+|||||+++|||+|+||++++.+++.||.|+.+|++++||+.++.|..
T Consensus 81 ~i~~v~~~~~sP~~~~~~l~~~gir~in~lVDitnyv~l~~Gqp~h~~d~~~~~~~i~vr~a~~~e~~~~ld~~~~~l~~ 160 (650)
T COG0072 81 VIKGVKVNAPSPLWLQARLRGVGIRPINNLVDITNYVHLELGQPRHAFDIGKIDGKIPVRYAKEGETLVFLDGKERELLT 160 (650)
T ss_pred EEECCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCEEEECCCCCCEEECCCCCEEECC
T ss_conf 99856568899889999998779970779999999999996897146446443787368973578735863885335368
Q ss_pred CCEEEECCCCCCCCHHHCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 32000025676310011135531201367269999715787888778876165401554413455301358899988875
Q gi|254780316|r 300 DNVVIASDGRIQSIAGIIGGKHAGCDDNTTDVLVEVALWDPINIARSGKNLGIITDSRYRFERGVDLQGMIPVLKHIVSL 379 (805)
Q Consensus 300 ~~lvI~d~~~~ialaGImGg~~s~v~~~T~~illEsA~F~p~~Ir~tar~l~l~TdaS~RfERgvd~~~~~~al~r~~~L 379 (805)
+++||+|.++++||||||||++|+|+++|+|+++|+|+|+|..||+++||++++|+||||||||+||..+..|++++++|
T Consensus 161 ~~~vi~d~~~~~alagv~g~~~s~~~~~t~d~~~E~a~f~Pi~i~~~~r~l~~~T~~~~r~~rGvD~~~v~~al~~~~~l 240 (650)
T COG0072 161 GDLVIADHEKGLALAGVMGGADSEVDPNTTDVLLEVASFPPIIISKTSRRLGLDTEASFRFERGVDPELVEKALNRATTL 240 (650)
T ss_pred CCEEEEECCCCEEEEEEECCCCCCCCCCEEEEEEEEEECCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 87899837974455346413556878440230336785476888751451257850268871279989999999999999
Q ss_pred HCCCCCCCCCCCEEEEEC--CCCCCCEECCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHH
Q ss_conf 212334555652587413--554310000431133331134587899999998402221034562366403454334402
Q gi|254780316|r 380 ILSLCGGTASDICIARNI--TYKPRKIVFMNSEVKRLSGIDVPIEDSLRILERLGFSVIGEYDKFEVSVPSWRQDVEEKA 457 (805)
Q Consensus 380 i~e~~gg~~~~~~~~~~~--~~~~~~I~l~~~~i~~ilG~~i~~~ei~~iL~~Lgf~v~~~~~~~~V~vPs~R~DI~~e~ 457 (805)
+.++|||+++++.+.+.. ..+++++.++.++++++||.+++.+++.++|++|||.++..+++|.|++|+||+||.+++
T Consensus 241 l~e~~gg~v~~~~~~~~~~~~~~~~~i~~~~~~i~~llG~~ls~eei~~iL~rLg~~~~~~~~~~~V~vPs~R~DI~~e~ 320 (650)
T COG0072 241 LAEICGGEVSSVVIVGGDEKLTPPRKIELRLERINRLLGLELSAEEIEKILKRLGFKVEVKGDGLTVTVPSYRVDILIEA 320 (650)
T ss_pred HHHHCCCEEEEEEEECCCCCCCCCCEEECCHHHHHHHHCCCCCHHHHHHHHHHCCCCEECCCCCEEEECCCCCCCCCCCC
T ss_conf 99862985514899457766788844871899999986898899999999997699034168746997688721356532
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH-HCCCCCC
Q ss_conf 567676765352334667655443457678998895467898878778774023210048257655200000-0002467
Q gi|254780316|r 458 DLVEEILRIYGVDQIKSEPLPLTQVEDKRNLSLQQSRTRYVKRVLASRAMMEVVNWSFISKEQSVLFGGGQR-ELEILNP 536 (805)
Q Consensus 458 DLiEEIaRiyGYdnIp~~~l~~~~~~~~~~~~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~-~i~l~NP 536 (805)
||||||+|+|||||||++++........ ..+..+.+.+.+|+.|+++||+|++||+|++++.+..|+.... .++|+||
T Consensus 321 DliEEv~r~yGy~ni~~~~p~~~~~~~~-~~~~~~~~~r~vr~~l~~~G~~Evitysl~s~e~~~~~~~~~~~~~~l~NP 399 (650)
T COG0072 321 DLIEEVARIYGYNNIPPELPSAFTIGRG-GLTPLQKFRRKVRRALVGLGFQEVITYSLTSPEEAKLFGLENDEALELANP 399 (650)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCCCCCCEEECCC
T ss_conf 7888999985714488758765445666-656678999999999985897599861258989999742377752685686
Q ss_pred CCCCCCCCCCHHHCHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCC-CCCEEHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 7643210151221106776432101586113454302444477754-431000221035431012462023454433331
Q gi|254780316|r 537 ISADMSNMRTSLLPGLLKATGRNVDRAIADFAIFEVSHVYENDTPE-GQKYMAAGIRKGSSGIEGSGRLWSDKSEERCRF 615 (805)
Q Consensus 537 lS~e~s~lR~SLlp~LL~~~~~N~~r~~~~i~lFEiG~Vf~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 615 (805)
+|+|+++||+||+||||+++++|++|+++++++||+|+||..+... .+....+++.++.. +...|... +.
T Consensus 400 iS~e~s~mR~sLlp~LL~~~~~N~~r~~~~~~iFEiG~v~~~~~~~~~~~~~~~~l~~g~~--------~~~~w~~~-~~ 470 (650)
T COG0072 400 ISEEYSVLRTSLLPGLLEALSYNKNRKNPDVRIFEIGDVFVKDEEAERETRHLAGLAAGLA--------GEESWQGK-RP 470 (650)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHCCC--------CCCCCCCC-CC
T ss_conf 7623888887778889999998753368864688667457058865320278999874446--------43334556-76
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCEEEEEECCEEEEEEEEEECHHHHHHCCCCCCEEEEEEEHHHHH
Q ss_conf 46888753111111101453330330588656789816999987929999985477899996687997899998787623
Q gi|254780316|r 616 VDLFDAKADALSVIEPFVSLDSLRFESGAPSWYHPGRSGIIKTSAEIVLGYFGEFHPNILDFFGLSNPICGFEVYLDSIP 695 (805)
Q Consensus 616 ~df~dlKg~v~~ll~~l~~~~~~~~~~~~~~~~hPgrsa~I~~~gk~iiG~iG~ihP~i~~~~~i~~~v~~~EI~ld~L~ 695 (805)
+|||++||++++++..++. .+++.+..+++|||||||.|++++ ..+|++|++||.++++|+|+.++|+|||+++.+.
T Consensus 471 v~f~d~Kg~ve~ll~~lg~--~~~~~~~~~~~~hpgrsA~I~~~~-~~iG~iGeiHP~vl~~~dl~~~~~~fEi~l~~l~ 547 (650)
T COG0072 471 VDFYDAKGDLEALLEALGV--EYEFEPAEHPAFHPGRSAAIYLNK-EVIGFIGELHPEVLKEFDLPGPVYVFEIDLDALL 547 (650)
T ss_pred CCHHHHHHHHHHHHHHCCC--CCEEEECCCCCCCCCCCEEEEECC-EEEEEEEEECHHHHHHCCCCCCCEEEEEEHHHHC
T ss_conf 4699999999999997299--727840556751368607999999-8889988876999987599888189997134424
Q ss_pred HHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHCC-CCEEEEEEEEEEECCCCCCCCEEEEEEEEEECC
Q ss_conf 5452024566313689888720018999668879999999997111-003576989876367799884269999998477
Q gi|254780316|r 696 ISQKKRTKTKKVVHLSSLHPVKRDLAFIVDQHIPAGTLVNIIKNVD-RLIDDVTVFDVFQGKSLGEGKKSVAIQVLIQPL 774 (805)
Q Consensus 696 ~~~~~~~~~~~~~~~s~fP~v~RDls~iv~~~v~~~~I~~~i~~~~-~ll~~v~lfDvY~g~~i~~gkkSla~rl~fqs~ 774 (805)
......|.++|+||++.|||||++|+++++++|.++|++++ +++++|.+||+|+ +++++|+||+|||++||+.
T Consensus 548 -----~~~~~~~~~~s~~pa~~RDia~~v~~~v~~~~i~~~i~~~~~~~l~~v~lfDvy~-~~~~~~~ks~a~~~~~~~~ 621 (650)
T COG0072 548 -----KRKKPAYKPISKFPAVRRDIALVVDEDVPAGDIVKAIKKAGGKLLESVNLFDVYQ-KGLGEGKKSLAIRLTFQDP 621 (650)
T ss_pred -----CCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEEEEEEE-CCCCCCCEEEEEEEEEECC
T ss_conf -----4446567888989854330699968999989999999983636689999999850-2578996689999999889
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCEEC
Q ss_conf 98889999999999999999999511981
Q gi|254780316|r 775 KDTFRDDDIRILMDRIVENVVKKTNAVLR 803 (805)
Q Consensus 775 ~kTLtd~EI~~i~~~ii~~l~~k~ga~LR 803 (805)
+|||||+||+.++++++++++++|||+||
T Consensus 622 ~rTLtdeev~~~~~~~~~~l~~~~~~~lr 650 (650)
T COG0072 622 ERTLTDEEVNALVNKIVEALKEKFGAELR 650 (650)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCEEC
T ss_conf 88888799999999999999998484709
No 5
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=100.00 E-value=0 Score=910.92 Aligned_cols=505 Identities=23% Similarity=0.320 Sum_probs=425.2
Q ss_pred CCHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCEEEEEEEEEEECCCCCCCEEEEECCCCCEEEEECCCCCC
Q ss_conf 78679988478999889999998745860421112465687489999997565799870899975999579897548345
Q gi|254780316|r 3 FTLSWLKDHLDTDVSLEKICDTLTSIGLEVEKVDNREALSPFTIVKVLSVERNPDLDCAILRIDTGKHQEIQVVCGAPNV 82 (805)
Q Consensus 3 is~~WL~~~v~~~~~~~~l~~~lt~~G~EVe~i~~~~~~~~vvvg~v~~~~~hP~adl~v~~Vd~g~~~~~~IvcgA~Nv 82 (805)
|+++||++|++.++|.+++++.||++|+|||.
T Consensus 6 ~~~~~~~~~~~~~~s~~~~~~~l~~~g~e~~~------------------------------------------------ 37 (546)
T PRK09616 6 VNKSDLERLTGIDLSDELLEDLLPMLKAEVEE------------------------------------------------ 37 (546)
T ss_pred ECHHHHHHHHCCCCCHHHHHHHHHHCCCCCCC------------------------------------------------
T ss_conf 74999999868999999999988874971236------------------------------------------------
Q ss_pred CCCCEEEEECCCCEECCCCEEEEEEHHCCCCCCCHHHHHHHCCCCCCCCCEEEECCCCCCCCCHHHHHCCCCEEEEEEEC
Q ss_conf 58978989668779258983983312058650545411887699854775078168888884558870888559998708
Q gi|254780316|r 83 RVGLLGVWAPPGSCIPENNMIVNVRKIRGIESTGMMCSEKELMLSDDSASIMELPIDAPVGGRLSDYLELSDPIIDVSLT 162 (805)
Q Consensus 83 ~~g~~V~~A~~Ga~lp~g~~~i~~~~irGv~S~GMlCS~~ELgl~~~~~gI~~l~~~~~~G~~~~~~l~l~D~i~ei~iT 162 (805)
+||+|||++||
T Consensus 38 ---------------------------------------------------------------------ldD~iieieiT 48 (546)
T PRK09616 38 ---------------------------------------------------------------------IDEDEIKIEFN 48 (546)
T ss_pred ---------------------------------------------------------------------CCCCEEEEEEC
T ss_conf ---------------------------------------------------------------------78867999758
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 78576655578999877641156666554566777777741589840731112332011232245566377878888640
Q gi|254780316|r 163 PNRSDCIGVRGIALDLVAAGLGKLKEINISCPLSSESIPLEIKFDLDDSSLCKGFAMCCVKGVRNNVAPNWMRQRLKAVG 242 (805)
Q Consensus 163 pNR~D~ls~~GiARElaa~~~~~l~~~~~~~~~~~~~~~~~i~v~i~~~~~c~~y~~~~i~~v~~~~SP~wl~~rL~~~G 242 (805)
|||||||||+|||||+||+++.+++.|.+..... ...+++++++.+.||+|.+++|+||++++||.|.
T Consensus 49 PNR~DcLSv~GiARElaA~~~~~l~~p~~~~~~~----~~~i~v~~~~~~~~p~~~~~vi~~Vki~~s~~~~-------- 116 (546)
T PRK09616 49 PDRPDLFSVEGLARALKGFLGIETGLPKYEVKDS----DVKIKVDEEVIEIRPYIAGAVVRGVKLDDEALES-------- 116 (546)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC----CCEEEEEECCCCCCCEEEEEEEECCCCCCCHHHH--------
T ss_conf 8768884889999999997598879997523788----8338993056566865889999896617604677--------
Q ss_pred CCCCHHHHHHHHHHHHHHCC-----CEEEECCCCCCCEEEEEECCCCCCHHHHHHHC-CCC-------------------
Q ss_conf 13210399999899986087-----00000102233326886235543114554201-124-------------------
Q gi|254780316|r 243 LRSISALVDITNYVSLDRGY-----PSHVFDASRISDVLTVRRACSGEKILALDNQE-YDL------------------- 297 (805)
Q Consensus 243 ir~inniVDitNyvmle~Gq-----PlHafD~dki~~~i~vr~a~~~E~~~~Ld~~e-~~L------------------- 297 (805)
++|+.|++|..+|| |+|+||+|||.+.|.||.++.||+|.+||+.+ .++
T Consensus 117 ------~i~l~~~l~~~~G~~r~~~~ig~~d~~kI~~~i~~~~~~~ge~~~~Ld~~~~~~~~~i~~~~~~g~~~~~ll~~ 190 (546)
T PRK09616 117 ------LIQLQEKLHWTYGRKRKKVAIGIHDLDKIKPPIYYKAVSPDEKFVPLGYDEEMTLREILEKHPKGREYGHLLKD 190 (546)
T ss_pred ------HHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCEEEEECCCCCEEEECCCCCCCCHHHHHHHHCCCCHHHHHHCC
T ss_conf ------99898999987565442134565048874895799987899758737874226899998740034100001116
Q ss_pred CCCCEEEECCC-CCCCCHHHCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 54320000256-76310011135531201367269999715787888778876165401554413455301358899988
Q gi|254780316|r 298 SPDNVVIASDG-RIQSIAGIIGGKHAGCDDNTTDVLVEVALWDPINIARSGKNLGIITDSRYRFERGVDLQGMIPVLKHI 376 (805)
Q Consensus 298 ~~~~lvI~d~~-~~ialaGImGg~~s~v~~~T~~illEsA~F~p~~Ir~tar~l~l~TdaS~RfERgvd~~~~~~al~r~ 376 (805)
...+.||+|++ +++||||||||++|+|+++|++||||||+|||..++++ ++++
T Consensus 191 ~~~~~vI~d~~~~v~alAGVmGG~~S~vt~~T~~IllEsAg~Dp~~v~~a--------------------------l~~~ 244 (546)
T PRK09616 191 FDKYPLIVDSEGNVLSFPPIINSELTRVTEGTRNLFIDVTGTDLEAVLLA--------------------------LNII 244 (546)
T ss_pred CCCCEEEEECCCCEEEECCCCCCCCEEECCCCCEEEEEEECCCHHHHHHH--------------------------HHHH
T ss_conf 88631799279964641431266414662786548998515898999999--------------------------9999
Q ss_pred HHHHCCCCCCCCCCCEEEEE---CCCCCCCEECCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCC
Q ss_conf 87521233455565258741---355431000043113333113458789999999840222103456236640345433
Q gi|254780316|r 377 VSLILSLCGGTASDICIARN---ITYKPRKIVFMNSEVKRLSGIDVPIEDSLRILERLGFSVIGEYDKFEVSVPSWRQDV 453 (805)
Q Consensus 377 ~~Li~e~~gg~~~~~~~~~~---~~~~~~~I~l~~~~i~~ilG~~i~~~ei~~iL~~Lgf~v~~~~~~~~V~vPs~R~DI 453 (805)
+.++.+ +||++..+...+. +..++++|.++.++++++||++++.++|.++|++|||+++.+++.|.|+|||||+||
T Consensus 245 ~~~l~e-~gg~~~~v~~~~~~~~p~~~~~~I~l~~~~i~~ilG~~i~~~ei~~iL~~Lgf~v~~~~~~~~V~vPs~R~Di 323 (546)
T PRK09616 245 VTALAE-RGGEIESVKVIGPDGTPDLTPRTREVSVDEINKLLGLDLSAEEIIELLEKMRFDAEVEDDEVKVLVPPYRVDI 323 (546)
T ss_pred HHHHHH-CCCCEEEEEEEECCCCCCCCCEEEEECHHHHHHHHCCCCCHHHHHHHHHHCCCEEEECCCCEEEECCCCCCCC
T ss_conf 999997-5895546899815877677764899489999987488679999999999879979956885799888732333
Q ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH--HHHHHHC
Q ss_conf 44025676767653523346676554434576789988954678988787787740232100482576552--0000000
Q gi|254780316|r 454 EEKADLVEEILRIYGVDQIKSEPLPLTQVEDKRNLSLQQSRTRYVKRVLASRAMMEVVNWSFISKEQSVLF--GGGQREL 531 (805)
Q Consensus 454 ~~e~DLiEEIaRiyGYdnIp~~~l~~~~~~~~~~~~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~--~~~~~~i 531 (805)
.+++||||||||+|||||||++.+. . ...+..+..+++.+++|+.|+++||+|++||||++++++..+ .+.++++
T Consensus 324 ~~e~DLiEEVaRiyGYd~Ip~~~p~-~--~~~~~~~~~~~~~~~ir~~L~~~G~~Evitysf~s~~~~~~~~~~~~~~~v 400 (546)
T PRK09616 324 LHEVDVIEDVAIAYGYNNLEPELPK-I--FTIGRLHPIEELSRAIRDLMVGLGFQEVMNFTLTSEEVLFEKMNLEEDDPV 400 (546)
T ss_pred CCHHHHHHHHHHHHCCCCCCCCCCC-C--CCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCCCCEE
T ss_conf 5501389999998182228754676-5--457889989999999999999689612762256898999876168868748
Q ss_pred CCCCCCCCCCCCCCCHHHCHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCC----CCEEHHHHCCCCCCCCCCCCCCCC
Q ss_conf 0246776432101512211067764321015861134543024444777544----310002210354310124620234
Q gi|254780316|r 532 EILNPISADMSNMRTSLLPGLLKATGRNVDRAIADFAIFEVSHVYENDTPEG----QKYMAAGIRKGSSGIEGSGRLWSD 607 (805)
Q Consensus 532 ~l~NPlS~e~s~lR~SLlp~LL~~~~~N~~r~~~~i~lFEiG~Vf~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~ 607 (805)
+|.||||+|+++|||||+||||+++++|++|+. +++|||+|+||..+.... +...++++. .|
T Consensus 401 ~l~NPis~e~s~mRtsLlp~LL~~~~~N~~r~~-~~~lFEiG~Vf~~~~~~~~~~~e~~~la~~~--------~g----- 466 (546)
T PRK09616 401 EVLNPISEDYTVLRTSLLPSLLEFLSINKHREY-PQKIFEIGDVVLIDESTETGTKTERKLAAAI--------AH----- 466 (546)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC-CEEEEEEECEEECCCCCCCCCCCCCEEEEEE--------EC-----
T ss_conf 964887456777775538999999998466899-8459974055804886555640023799999--------79-----
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCEEEEEECCEEEEEEEEEECHHHHHHCCCCCCEEEE
Q ss_conf 54433331468887531111111014533303305886567898169999879299999854778999966879978999
Q gi|254780316|r 608 KSEERCRFVDLFDAKADALSVIEPFVSLDSLRFESGAPSWYHPGRSGIIKTSAEIVLGYFGEFHPNILDFFGLSNPICGF 687 (805)
Q Consensus 608 ~~~~~~~~~df~dlKg~v~~ll~~l~~~~~~~~~~~~~~~~hPgrsa~I~~~gk~iiG~iG~ihP~i~~~~~i~~~v~~~ 687 (805)
..+|||++||.+++++..++. .+++.+.++++|||||||.|+++|+.+ |++|+|||.++++|+|+.++|+|
T Consensus 467 ------~~~dF~d~Kg~ve~ll~~l~~--~~~~~~~~~~~~hPgrsA~I~~~g~~i-G~iG~LHP~v~~~~~i~~~v~~f 537 (546)
T PRK09616 467 ------SGATFTEIKSVVKALLRELGI--EYEVEESEHPSFIPGRCADILVNGKEI-GVIGEIHPEVLENFGLEVPVVAF 537 (546)
T ss_pred ------CCCCHHHHHHHHHHHHHHCCC--CEEEEECCCCCCCCCCEEEEEECCEEE-EEEEEECHHHHHHCCCCCCEEEE
T ss_conf ------977999999999999998499--559942788877899769999999799-99999999999975979986999
Q ss_pred EEEHHHHH
Q ss_conf 98787623
Q gi|254780316|r 688 EVYLDSIP 695 (805)
Q Consensus 688 EI~ld~L~ 695 (805)
|||||.|.
T Consensus 538 Eldld~L~ 545 (546)
T PRK09616 538 EIDLEALL 545 (546)
T ss_pred EEEHHHHC
T ss_conf 99957840
No 6
>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit; InterPro: IPR004531 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (see IPR002319 from INTERPRO). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta. In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases . This family describes the beta subunit. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps (see also IPR004532 from INTERPRO). This family represents the subfamily that includes the beta subunit from eukaryotic cytosol, the archaea, and spirochetes.; GO: 0000166 nucleotide binding, 0004826 phenylalanine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006432 phenylalanyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=556.42 Aligned_cols=497 Identities=21% Similarity=0.306 Sum_probs=382.5
Q ss_pred CCCHHHHHCCC-CEEEEEEEC-CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEC--CCHHHHHH
Q ss_conf 84558870888-559998708-785766555789998776411566665545667777777415898407--31112332
Q gi|254780316|r 143 GGRLSDYLELS-DPIIDVSLT-PNRSDCIGVRGIALDLVAAGLGKLKEINISCPLSSESIPLEIKFDLDD--SSLCKGFA 218 (805)
Q Consensus 143 G~~~~~~l~l~-D~i~ei~iT-pNR~D~ls~~GiARElaa~~~~~l~~~~~~~~~~~~~~~~~i~v~i~~--~~~c~~y~ 218 (805)
|.++-++..-+ +..+++++. |||||+||+.|+||-|-.+++.+-....+..... +.....+++.|+. .+..||.+
T Consensus 37 ~~~~E~~~~~~~E~~ik~ef~dpNRPDLlS~EG~AR~lrg~lg~e~g~~~y~~~~~-dfkkf~~k~~Vd~s~~~~RP~i~ 115 (605)
T TIGR00471 37 GAEIEGFDEESEEKKIKVEFNDPNRPDLLSVEGVARSLRGYLGIEKGLKSYDSKKG-DFKKFEVKITVDESVLQIRPFIT 115 (605)
T ss_pred CCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-CCEEEEEEEEEECCHHHHHHHHE
T ss_conf 64113420378985588973489850578899999986665124568864443355-32365328998072133324411
Q ss_pred HCCCCCCCCCC----CCHHHHHHHHHH-CC-CCCHHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEECCCC-CCHHHHH
Q ss_conf 01123224556----637787888864-01-32103999998999860870000010223332688623554-3114554
Q gi|254780316|r 219 MCCVKGVRNNV----APNWMRQRLKAV-GL-RSISALVDITNYVSLDRGYPSHVFDASRISDVLTVRRACSG-EKILALD 291 (805)
Q Consensus 219 ~~~i~~v~~~~----SP~wl~~rL~~~-Gi-r~inniVDitNyvmle~GqPlHafD~dki~~~i~vr~a~~~-E~~~~Ld 291 (805)
+++++||++.+ |-..+|++||+. |- |.. ...| +| |+|+|++++.++..... -+|++||
T Consensus 116 ~av~kg~~~~Dk~l~s~i~~QEkLH~~~GR~Rrk-----------vAiG--~H--Dld~v~~Pf~Y~av~p~g~kFVPL~ 180 (605)
T TIGR00471 116 GAVVKGIILNDKVLESLIELQEKLHWNIGRNRRK-----------VAIG--IH--DLDKVKFPFSYKAVSPNGIKFVPLN 180 (605)
T ss_pred EHHHCCCEECHHHHHHHHHHHHHHHHHHCCCCCE-----------EEEE--EC--CCCCCCCCEEEECCCCCCEEECCCC
T ss_conf 1111244024799999999888888862778525-----------7772--00--1234358653641289880533478
Q ss_pred H---------------------H-CCC--CCC--CCEEEECCC-CCCCCHHHCCCCCCC-CCCCCCEEEEEEECCCHHHH
Q ss_conf 2---------------------0-112--454--320000256-763100111355312-01367269999715787888
Q gi|254780316|r 292 N---------------------Q-EYD--LSP--DNVVIASDG-RIQSIAGIIGGKHAG-CDDNTTDVLVEVALWDPINI 343 (805)
Q Consensus 292 ~---------------------~-e~~--L~~--~~lvI~d~~-~~ialaGImGg~~s~-v~~~T~~illEsA~F~p~~I 343 (805)
- . +|. |.. .-.+|.|++ .++|+++||+|++|+ |+.+|||||+++.-+
T Consensus 181 ~d~EmT~~eilEfyksPeh~KG~G~YaHii~d~D~fP~I~Ds~~~V~S~PPiIN~E~t~s~~v~Tr~lliDVTG~----- 255 (605)
T TIGR00471 181 SDQEMTPDEILEFYKSPEHPKGIGEYAHIIKDSDKFPLILDSKDDVLSMPPIINSELTKSVTVNTRDLLIDVTGT----- 255 (605)
T ss_pred CCCCCCHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCEEEECCCCEEECCCCCCCCCCCEEEECCEEEEEEEECC-----
T ss_conf 832457778876433888768864158885288976547636888773587103255300232670677885211-----
Q ss_pred HHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEE------CCCCC----CCEECCCCHHHH
Q ss_conf 77887616540155441345530135889998887521233455565258741------35543----100004311333
Q gi|254780316|r 344 ARSGKNLGIITDSRYRFERGVDLQGMIPVLKHIVSLILSLCGGTASDICIARN------ITYKP----RKIVFMNSEVKR 413 (805)
Q Consensus 344 r~tar~l~l~TdaS~RfERgvd~~~~~~al~r~~~Li~e~~gg~~~~~~~~~~------~~~~~----~~I~l~~~~i~~ 413 (805)
|-..+..+|.-++..+.+.|-|......+.+. ....+ +.+.++.+.||+
T Consensus 256 ---------------------D~~a~~~~LnI~~t~fa~~g~g~i~~~~V~~~~~~~~~~~L~~~~~~~~mev~v~~iN~ 314 (605)
T TIGR00471 256 ---------------------DKEAVELTLNIICTDFADRGFGRIEVVEVVRPDEELLLPNLAPRFYDRIMEVSVEEINR 314 (605)
T ss_pred ---------------------CHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEHHHHHH
T ss_conf ---------------------76999999999999998707873311676656732378777764024265541766654
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHCCCC---CCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 311345878999999984022210345---62366403454334402567676765352334667655443457678998
Q gi|254780316|r 414 LSGIDVPIEDSLRILERLGFSVIGEYD---KFEVSVPSWRQDVEEKADLVEEILRIYGVDQIKSEPLPLTQVEDKRNLSL 490 (805)
Q Consensus 414 ilG~~i~~~ei~~iL~~Lgf~v~~~~~---~~~V~vPs~R~DI~~e~DLiEEIaRiyGYdnIp~~~l~~~~~~~~~~~~~ 490 (805)
+||.++|.++|...|+++++.....++ .+.|.+|.||.||.||+|+|||||--|||+||++..+.........++ +
T Consensus 315 ~LGl~Lsa~~I~~~L~Kmr~~a~~~~~DkDk~~v~IP~YR~DIlHE~D~~EdvAigyG~~~~~pE~P~~~t~g~~~Pl-p 393 (605)
T TIGR00471 315 LLGLNLSADEIAESLKKMRLDAESKDEDKDKLKVVIPAYRVDILHEVDVIEDVAIGYGYNNIEPELPKILTIGRLKPL-P 393 (605)
T ss_pred HHCCCCCHHHHHHHHHHCCCCEEECCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCC-C
T ss_conf 425678989999897417731144267752468717897640210031777778873221068777712222104888-7
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH-HH-HH---HHCCCCCCCCCCCCCCCCHHHCHHHHHHHHHCCCCCC
Q ss_conf 8954678988787787740232100482576552-00-00---0000246776432101512211067764321015861
Q gi|254780316|r 491 QQSRTRYVKRVLASRAMMEVVNWSFISKEQSVLF-GG-GQ---RELEILNPISADMSNMRTSLLPGLLKATGRNVDRAIA 565 (805)
Q Consensus 491 ~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~-~~-~~---~~i~l~NPlS~e~s~lR~SLlp~LL~~~~~N~~r~~~ 565 (805)
..+..+.+|..|+|+||+|++++.|+|++..... .. ++ ..|+++||+|.||+++|+||||+||++++.|.|+..|
T Consensus 394 ~~~~~~~~R~~mvG~GF~EVi~l~L~s~~~~~~~mR~~d~~~k~~v~V~~P~t~e~~~~R~SlLP~LLe~~~~Nk~~~lP 473 (605)
T TIGR00471 394 LEKVSDIIREIMVGLGFQEVISLTLTSEEVLFKRMRIEDNNFKLAVKVANPLTLEYTIVRTSLLPGLLETLSENKHHELP 473 (605)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 77887576542204704342410047806999980757887200333117876233377656223678888651489988
Q ss_pred HHHHHHHCCCCCCCCCC----CCCE---EHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCE
Q ss_conf 13454302444477754----4310---0022103543101246202345443333146888753111111101453330
Q gi|254780316|r 566 DFAIFEVSHVYENDTPE----GQKY---MAAGIRKGSSGIEGSGRLWSDKSEERCRFVDLFDAKADALSVIEPFVSLDSL 638 (805)
Q Consensus 566 ~i~lFEiG~Vf~~~~~~----~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~df~dlKg~v~~ll~~l~~~~~~ 638 (805)
.++||+|+|..++... .+.. .+++...+.. ..-+. -..+.++|..++..+++++..++. .+
T Consensus 474 -~KiFE~GDVV~~d~~~erk~~~~r~~~~lA~~~~~~~-------eiiqG--llGki~~F~eI~S~v~~~~~~L~~--e~ 541 (605)
T TIGR00471 474 -QKIFEIGDVVVKDDDSERKETRSRVVTKLAVLITHSE-------EIIQG--LLGKIANFNEIKSIVAALLRELGI--EY 541 (605)
T ss_pred -CEEEEEEEEEEECCCHHHHHHCCEEEEEEEEEEECCH-------HHHHH--HHHHHCCCHHHHHHHHHHHHHCCC--CE
T ss_conf -2078874388828720122305625556787762761-------43343--553201302478899999996398--37
Q ss_pred EEECC-CCCCCCCCCEEEEEECCE-----EEEE-EEEEECHHHHHHCCCCCCEEEEEEEHHHH
Q ss_conf 33058-865678981699998792-----9999-98547789999668799789999878762
Q gi|254780316|r 639 RFESG-APSWYHPGRSGIIKTSAE-----IVLG-YFGEFHPNILDFFGLSNPICGFEVYLDSI 694 (805)
Q Consensus 639 ~~~~~-~~~~~hPgrsa~I~~~gk-----~iiG-~iG~ihP~i~~~~~i~~~v~~~EI~ld~L 694 (805)
+..+. +++.|.+||||+|..+|| ..|| +||+|||.|+.+|+|.-||.+|||+++.+
T Consensus 542 ~~~e~D~~~~fi~GR~A~I~~~GK~GaeP~~IGG~FGe~HPEV~~NF~l~~Pvs~fE~~~~~f 604 (605)
T TIGR00471 542 EIEESDEHPSFIEGRGAKIVIEGKEGAEPKAIGGVFGEIHPEVLTNFELEFPVSAFEVNIEVF 604 (605)
T ss_pred EEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEECCEECCCCCCEEEEEEEEEEHHC
T ss_conf 983178861311671048984165788833257402314220562788320169999850120
No 7
>pfam03483 B3_4 B3/4 domain. This domain is found in tRNA synthetase beta subunits as well as in some non tRNA synthetase proteins.
Probab=100.00 E-value=0 Score=448.35 Aligned_cols=173 Identities=40% Similarity=0.771 Sum_probs=170.7
Q ss_pred HHHHHHHCCCCCCC-CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEECCCCCCHHHHH
Q ss_conf 11233201123224-55663778788886401321039999989998608700000102233326886235543114554
Q gi|254780316|r 213 LCKGFAMCCVKGVR-NNVAPNWMRQRLKAVGLRSISALVDITNYVSLDRGYPSHVFDASRISDVLTVRRACSGEKILALD 291 (805)
Q Consensus 213 ~c~~y~~~~i~~v~-~~~SP~wl~~rL~~~Gir~inniVDitNyvmle~GqPlHafD~dki~~~i~vr~a~~~E~~~~Ld 291 (805)
.|++|.++.++||+ +.+||+|||+||.++|+||||++||||||||||+|||+||||+|||.|.|.||.|++||+|.+||
T Consensus 1 ~c~~~~~~~i~~i~~~~~SP~wl~~rL~~~G~~pIN~iVDitNyv~le~GqP~hafD~dki~g~i~vr~a~~~E~~~~L~ 80 (174)
T pfam03483 1 ACPRYFGRVIRGVKKNRPSPEWLQRRLRRAGIRPINNVVDITNYVMLELGQPLHAFDLDKIEGDIVVRLAKGGEKFTTLD 80 (174)
T ss_pred CCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEEECCCCCEEEECC
T ss_conf 99875079998987789998999999998599872175609999999958974454688748977999889996036226
Q ss_pred HHCCCCCCCCEEEECCCCCCCCHHHCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHH
Q ss_conf 20112454320000256763100111355312013672699997157878887788761654015544134553013588
Q gi|254780316|r 292 NQEYDLSPDNVVIASDGRIQSIAGIIGGKHAGCDDNTTDVLVEVALWDPINIARSGKNLGIITDSRYRFERGVDLQGMIP 371 (805)
Q Consensus 292 ~~e~~L~~~~lvI~d~~~~ialaGImGg~~s~v~~~T~~illEsA~F~p~~Ir~tar~l~l~TdaS~RfERgvd~~~~~~ 371 (805)
+++|+|+++++||+|+++|+||||||||.+|+|+++||+||||+|+|+|..||+|||+|+|+||||+|||||+||+.+..
T Consensus 81 ~~~~~l~~~~lVi~D~~~~i~laGi~gg~~s~v~~~Tk~I~lE~a~f~p~~i~~~~r~~~l~tdas~rfergvd~~~~~~ 160 (174)
T pfam03483 81 GKERELDPGDLVIADDDGPVALAGIMGGEESEVTEDTTNIFLESAYFDPVAIRKTSRKLGLRTDASYRFERGVDPELLEA 160 (174)
T ss_pred CCCCCCCCHHEEEEECCCCEEEEEEECCCCCCCCCCCEEEEEEEEEECHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHH
T ss_conf 86052784122888678760551010675333344730799995388689999999981898688887756899899999
Q ss_pred HHHHHHHHHCCCCC
Q ss_conf 99988875212334
Q gi|254780316|r 372 VLKHIVSLILSLCG 385 (805)
Q Consensus 372 al~r~~~Li~e~~g 385 (805)
|++|+++||.++||
T Consensus 161 al~~~~~Li~~~~g 174 (174)
T pfam03483 161 ALDRATALLLELCG 174 (174)
T ss_pred HHHHHHHHHHHHCC
T ss_conf 99999999999749
No 8
>KOG2472 consensus
Probab=100.00 E-value=0 Score=429.04 Aligned_cols=474 Identities=20% Similarity=0.279 Sum_probs=359.6
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHCCCCCCCCCC---
Q ss_conf 85599987087857665557899987764115666655456677777774158984073111233201123224556---
Q gi|254780316|r 153 SDPIIDVSLTPNRSDCIGVRGIALDLVAAGLGKLKEINISCPLSSESIPLEIKFDLDDSSLCKGFAMCCVKGVRNNV--- 229 (805)
Q Consensus 153 ~D~i~ei~iTpNR~D~ls~~GiARElaa~~~~~l~~~~~~~~~~~~~~~~~i~v~i~~~~~c~~y~~~~i~~v~~~~--- 229 (805)
+.....+++.+||.|+++..|+|+-+-+ |..+...|.++........-..+.+..+..+..|++.+++++||+..+
T Consensus 59 e~~~ykidipANrydllC~egl~qalrv-f~~~~~~p~yk~~~~s~t~~~k~~v~~~t~qIRP~~v~aVir~v~l~~~ds 137 (578)
T KOG2472 59 EEVRYKIDIPANRYDLLCLEGLAQALRV-FPRETEFPSYKLQDFSSTKRQKLIVKPETSQIRPFAVCAVIRNVSLDPPDS 137 (578)
T ss_pred CCEEEEHHCCCCCCCCCCHHHHHHHHHH-CCCCCCCCCCEEECCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCHHH
T ss_conf 5512301055544562006889888774-445578876300024666414899866401011378888873575685256
Q ss_pred --CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEECCCCC-CHHHHHHHCCCCCCCC-----
Q ss_conf --63778788886401321039999989998608700000102233326886235543-1145542011245432-----
Q gi|254780316|r 230 --APNWMRQRLKAVGLRSISALVDITNYVSLDRGYPSHVFDASRISDVLTVRRACSGE-KILALDNQEYDLSPDN----- 301 (805)
Q Consensus 230 --SP~wl~~rL~~~Gir~inniVDitNyvmle~GqPlHafD~dki~~~i~vr~a~~~E-~~~~Ld~~e~~L~~~~----- 301 (805)
|-.-+|.+|++.=.|- =.+-..| +| |+|++.|++.++.-...| +|.+|+ +++.++...
T Consensus 138 y~sFIdlQdKLHqnicrn---------RtLvAiG--TH--DLDt~qgPf~Y~Al~peei~f~PLN-qtre~~~~eL~~~y 203 (578)
T KOG2472 138 YKSFIDLQDKLHQNICRN---------RTLVAIG--TH--DLDTIQGPFEYEALPPEEIKFKPLN-QTREVTASELMSFY 203 (578)
T ss_pred HHHHHHHHHHHHHHHHHH---------CCCCCCC--CC--CCHHCCCCEEEEEECHHHCCCCCCH-HHHCCCCCCCCCCC
T ss_conf 676776899999988764---------2034565--55--5311048705652073441743035-54113520002634
Q ss_pred -------------------EEEECCCC-CCCCHHHCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHC
Q ss_conf -------------------00002567-6310011135531201367269999715787888778876165401554413
Q gi|254780316|r 302 -------------------VVIASDGR-IQSIAGIIGGKHAGCDDNTTDVLVEVALWDPINIARSGKNLGIITDSRYRFE 361 (805)
Q Consensus 302 -------------------lvI~d~~~-~ialaGImGg~~s~v~~~T~~illEsA~F~p~~Ir~tar~l~l~TdaS~RfE 361 (805)
.||.|.++ +.++++|++|++|+++-+|+|||+|+ ||
T Consensus 204 ~~d~~l~rYlhII~~sPvypvi~Ds~~~V~SlPPIiNsd~Skitl~TknIfiev----------Ta-------------- 259 (578)
T KOG2472 204 KRDMHLKRYLHIIENSPVYPVIYDSKGVVCSLPPIINSDHSKITLNTKNIFIEV----------TA-------------- 259 (578)
T ss_pred CCCCCHHHHEHHHCCCCCCCEEECCCCCEEECCCCCCCCCCEEEECCCEEEEEE----------EE--------------
T ss_conf 676546440221248986420217887657169945765432430451178885----------31--------------
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCC--CCCCEEEEE-------CCCCCCCEECCCCHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 45530135889998887521233455--565258741-------355431000043113333113458789999999840
Q gi|254780316|r 362 RGVDLQGMIPVLKHIVSLILSLCGGT--ASDICIARN-------ITYKPRKIVFMNSEVKRLSGIDVPIEDSLRILERLG 432 (805)
Q Consensus 362 Rgvd~~~~~~al~r~~~Li~e~~gg~--~~~~~~~~~-------~~~~~~~I~l~~~~i~~ilG~~i~~~ei~~iL~~Lg 432 (805)
.|...+..++.-.+.|..+.|+-+ ++++-+... +....+....+.+.++.-+|.+++.+++..+|+||-
T Consensus 260 --Td~~ka~ivl~~~v~lfS~~c~~~ftiepveIv~~~G~~~l~P~l~~r~~~~~~~~in~~~g~~l~~~~~~~~l~RM~ 337 (578)
T KOG2472 260 --TDFTKAKIVLNTIVTLFSQQCFLKFTIEPVEIVCGEGGSILYPQLANRSMTMSIQAINFAIGLNLTIEEQAYYLTRMY 337 (578)
T ss_pred --CCCHHHHCCCCEEEEHHHHHHCCCCCCCCEEEECCCCCEEECCCCCCCCEEEEHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf --321100000012641235653467622414888589947977222675326305566653155888899998876431
Q ss_pred HHHHCCCC-CCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 22210345-62366403454334402567676765352334667655443457678998895467898878778774023
Q gi|254780316|r 433 FSVIGEYD-KFEVSVPSWRQDVEEKADLVEEILRIYGVDQIKSEPLPLTQVEDKRNLSLQQSRTRYVKRVLASRAMMEVV 511 (805)
Q Consensus 433 f~v~~~~~-~~~V~vPs~R~DI~~e~DLiEEIaRiyGYdnIp~~~l~~~~~~~~~~~~~~~~~~~~ir~~L~~~Gf~Ev~ 511 (805)
.+.+..++ +++|.||.-|.||.|.+|++|++|-.||||||+.+ +|.... ....-+..++.+.+|..++.+||.|++
T Consensus 338 L~a~v~~~~~l~v~iPptraDIlHaCDI~ED~aIAyGyNNi~~~-lP~~~~--~~~~~plNkl~d~lR~e~a~ag~~E~l 414 (578)
T KOG2472 338 LKAKVIGNGNLEVKIPPTRADILHACDIVEDAAIAYGYNNIQMT-LPASNT--IAKPFPLNKLTDILRIEVAAAGFTEAL 414 (578)
T ss_pred EEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCC-CCCHHC--CCCCCCHHHHHHHHHHHHHHHHHHHHE
T ss_conf 24474489843786698603310021256677777241540114-750320--147445478889999999885156531
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCC----CCEE
Q ss_conf 210048257655200000000246776432101512211067764321015861134543024444777544----3100
Q gi|254780316|r 512 NWSFISKEQSVLFGGGQRELEILNPISADMSNMRTSLLPGLLKATGRNVDRAIADFAIFEVSHVYENDTPEG----QKYM 587 (805)
Q Consensus 512 tysl~s~~~~~~~~~~~~~i~l~NPlS~e~s~lR~SLlp~LL~~~~~N~~r~~~~i~lFEiG~Vf~~~~~~~----~~~~ 587 (805)
|+.|+|.++. -.....+|.|.||.|-|+.++|+||+||||++++.|.++..+ +++||+++|...+...+ .+..
T Consensus 415 ~~~LcS~de~--~~d~~~AV~l~NPkt~efqv~RtsLlPGllKTv~~N~~~~lP-~klFEisDvv~~D~~~e~ga~N~R~ 491 (578)
T KOG2472 415 TFTLCSRDEN--VIDGDKAVHLGNPKTLEFQVVRTSLLPGLLKTVASNRKMPLP-IKLFEISDVVFKDSSTEVGARNERH 491 (578)
T ss_pred EEEEECCCCC--CCCCCCCEEECCCCCEEEEEEHHHHCHHHHHHHHHCCCCCCC-EEEEEEEEEEEECCCCCCCCCCHHE
T ss_conf 0013336557--766443058459873454320243023889988860479876-3588751079851654014424000
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCEEEEEECCEEEEEEE
Q ss_conf 02210354310124620234544333314688875311111110145333033058865678981699998792999998
Q gi|254780316|r 588 AAGIRKGSSGIEGSGRLWSDKSEERCRFVDLFDAKADALSVIEPFVSLDSLRFESGAPSWYHPGRSGIIKTSAEIVLGYF 667 (805)
Q Consensus 588 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~df~dlKg~v~~ll~~l~~~~~~~~~~~~~~~~hPgrsa~I~~~gk~iiG~i 667 (805)
++++-+|. ...|--+.|.+..+++.-...+.+..+.++.+ |.|||||.|++.|+.+ |.+
T Consensus 492 l~A~y~g~-------------------~~gfE~i~Glld~~l~~~~~~~~Y~i~~~~~~-yfpgr~A~v~~~g~~i-G~~ 550 (578)
T KOG2472 492 LAAVYCGK-------------------TSGFEIIHGLLDQLLNVPPIRDSYYIEADEDP-YFPGRCAKVIVEGKVI-GKI 550 (578)
T ss_pred EEEEECCC-------------------CCCHHHHHHHHHHHHCCCCCCCCEEEECCCCC-CCCCCCEEEEECCCEE-EEE
T ss_conf 00000278-------------------86489998799998447765550578447687-6788613789727155-321
Q ss_pred EEECHHHHHHCCCCCCEEEEEEEHHHH
Q ss_conf 547789999668799789999878762
Q gi|254780316|r 668 GEFHPNILDFFGLSNPICGFEVYLDSI 694 (805)
Q Consensus 668 G~ihP~i~~~~~i~~~v~~~EI~ld~L 694 (805)
|.+||.++++|++..|+.++|||++.+
T Consensus 551 GvlhPev~~~F~l~~~~s~~Ei~ie~~ 577 (578)
T KOG2472 551 GVLHPEVLTKFELTYPCSAVEIDIEPF 577 (578)
T ss_pred CCCCHHHHHHCCCCCCCCEEEEEEEEC
T ss_conf 014899985258887541379620735
No 9
>smart00873 B3_4 B3/4 domain. This domain is found in tRNA synthetase beta subunits as well as in some non tRNA synthetase proteins.
Probab=100.00 E-value=0 Score=362.80 Aligned_cols=172 Identities=38% Similarity=0.732 Sum_probs=168.1
Q ss_pred HHHHHHCCCCCCCCC-CCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCE-EEEEECCCCCCHHHHH
Q ss_conf 123320112322455-66377878888640132103999998999860870000010223332-6886235543114554
Q gi|254780316|r 214 CKGFAMCCVKGVRNN-VAPNWMRQRLKAVGLRSISALVDITNYVSLDRGYPSHVFDASRISDV-LTVRRACSGEKILALD 291 (805)
Q Consensus 214 c~~y~~~~i~~v~~~-~SP~wl~~rL~~~Gir~inniVDitNyvmle~GqPlHafD~dki~~~-i~vr~a~~~E~~~~Ld 291 (805)
||+|.++++++++.. +||+|||+||+++|+||||++|||+|||||++|||+||||+|||.+. |.+|.|+++|+|.+||
T Consensus 1 ~~~~~~~~~~~v~~~~~Sp~~l~~rL~~~g~~~in~iVDi~Nyv~l~~g~P~h~~D~dki~~~~i~l~~a~~~e~~~~l~ 80 (174)
T smart00873 1 CPRYLGRVIRGVKNTRPSPEWLQERLHRAGIRPINNVVDITNYVSLETGQPLHAFDLDKIKGKDIPLRRAKEGETFETLD 80 (174)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEEEECCCCCEEEECC
T ss_conf 99772899989977999859999999985998731767099999999389753433542679838999779997256048
Q ss_pred HHCCCCCCCCEEEECCCCCCCCHHHCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHH
Q ss_conf 20112454320000256763100111355312013672699997157878887788761654015544134553013588
Q gi|254780316|r 292 NQEYDLSPDNVVIASDGRIQSIAGIIGGKHAGCDDNTTDVLVEVALWDPINIARSGKNLGIITDSRYRFERGVDLQGMIP 371 (805)
Q Consensus 292 ~~e~~L~~~~lvI~d~~~~ialaGImGg~~s~v~~~T~~illEsA~F~p~~Ir~tar~l~l~TdaS~RfERgvd~~~~~~ 371 (805)
++++.|.++++||+|+++|+++||||||.+|+|+++|++|++|+|+|+|..||+|++++++.||+|+|||||+||+.+..
T Consensus 81 ~~~~~l~~~~~vi~d~~~~~~iagi~G~~~~~v~~~t~~i~le~a~~~~~~ir~t~~~~~l~~d~s~r~e~gvd~~~~~~ 160 (174)
T smart00873 81 GKEYELDEGDLVIADDEGPLALAGVMGGEESEVTENTTNIFLEPAIFSPRTIRITARTLNLFTDASGRFERGVDPELVEL 160 (174)
T ss_pred CCEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEEEEEECHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHH
T ss_conf 84797687532788636671541120676431000510499997587689999999984898688876636899899999
Q ss_pred HHHHHHHHHCCCCC
Q ss_conf 99988875212334
Q gi|254780316|r 372 VLKHIVSLILSLCG 385 (805)
Q Consensus 372 al~r~~~Li~e~~g 385 (805)
|++++++||.++||
T Consensus 161 al~~~~~ll~~~~g 174 (174)
T smart00873 161 ALDRAAALLLEICG 174 (174)
T ss_pred HHHHHHHHHHHHCC
T ss_conf 99999999999749
No 10
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Probab=100.00 E-value=9.9e-44 Score=329.53 Aligned_cols=195 Identities=33% Similarity=0.562 Sum_probs=171.7
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH-HHHHCCCCCCCCCCCCCCCCHHHCHHHHHHHHHCCCCCCHHHH
Q ss_conf 895467898878778774023210048257655200-0000002467764321015122110677643210158611345
Q gi|254780316|r 491 QQSRTRYVKRVLASRAMMEVVNWSFISKEQSVLFGG-GQRELEILNPISADMSNMRTSLLPGLLKATGRNVDRAIADFAI 569 (805)
Q Consensus 491 ~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~-~~~~i~l~NPlS~e~s~lR~SLlp~LL~~~~~N~~r~~~~i~l 569 (805)
.+++++++|+.|+++||+|++||||+++++++.+.. .+++++|+||+|+|+++||+||+||||+++++|++|++.++++
T Consensus 2 ~~~l~~~ir~~L~~~Gf~Ev~t~s~~~~~~~~~~~~~~~~~i~l~NPls~e~~~lR~sLlp~LL~~~~~N~~r~~~~~~l 81 (198)
T cd00769 2 LQKLERKLRRLLAGLGFQEVITYSLTSPEEAELFDGGLDEAVELSNPLSEEYSVLRTSLLPGLLDALARNLNRKNKPLRL 81 (198)
T ss_pred HHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE
T ss_conf 67999999999997897141306768989998724887873897088656688988877999999998650567777328
Q ss_pred HHHCCCCCCCCCC-CCCEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCC
Q ss_conf 4302444477754-431000221035431012462023454433331468887531111111014533303305886567
Q gi|254780316|r 570 FEVSHVYENDTPE-GQKYMAAGIRKGSSGIEGSGRLWSDKSEERCRFVDLFDAKADALSVIEPFVSLDSLRFESGAPSWY 648 (805)
Q Consensus 570 FEiG~Vf~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~df~dlKg~v~~ll~~l~~~~~~~~~~~~~~~~ 648 (805)
||+|+||.++... .|+..++++ .+|......|..+.+..|||++||++++++..++....+.+.+..+++|
T Consensus 82 FEiG~vy~~~~~~~~E~~~l~~~--------~~g~~~~~~~~~~~~~~df~~lKg~v~~ll~~l~~~~~~~~~~~~~~~~ 153 (198)
T cd00769 82 FEIGRVFLKDEDGPEEEEHLAAL--------LSGNREPESWQGKGRPVDFYDAKGILEALLRALGIIVEFELEELDADLF 153 (198)
T ss_pred EEEEEEEECCCCCCCCCEEEEEE--------EECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 99763896688876423057888--------8667775564557776799999999999999809985189920787665
Q ss_pred CCCCEEEEEECCEEEEEEEEEECHHHHHHCCCCCCEEEEEEEHHHH
Q ss_conf 8981699998792999998547789999668799789999878762
Q gi|254780316|r 649 HPGRSGIIKTSAEIVLGYFGEFHPNILDFFGLSNPICGFEVYLDSI 694 (805)
Q Consensus 649 hPgrsa~I~~~gk~iiG~iG~ihP~i~~~~~i~~~v~~~EI~ld~L 694 (805)
||||||+|+++|+.+ |++|+|||.++++|||+.+|++||||||.|
T Consensus 154 hpg~sa~I~~~~~~i-G~iG~l~p~il~~~~i~~~v~~~Ei~ld~L 198 (198)
T cd00769 154 HPGRSAKIYVNGEVI-GFIGELHPEVLKEFDLKEPVYAFELDLDAL 198 (198)
T ss_pred CCCCEEEEEECCEEE-EEEEEECHHHHHHCCCCCCEEEEEEECCCC
T ss_conf 568669999999899-999999999999759899779999973359
No 11
>cd02796 tRNA_bind_bactPheRS tRNA-binding-domain-containing prokaryotic phenylalanly tRNA synthetase (PheRS) beta chain. PheRS aminoacylate phenylalanine transfer RNAs (tRNAphe). PheRSs belong structurally to class II aminoacyl tRNA synthetases (aaRSs) but, as they aminoacylate the 2'OH of the terminal ribose of tRNA they belong functionally to class 1 aaRSs. This domain has general tRNA binding properties and is believed to direct tRNAphe to the active site of the enzyme.
Probab=99.98 E-value=3.4e-32 Score=247.62 Aligned_cols=102 Identities=48% Similarity=0.834 Sum_probs=98.9
Q ss_pred EEEEEEEEEEECCCCC-CCEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCEECCCCEEEEEEHHCCCCCCCHHHHHH
Q ss_conf 4899999975657998-708999759995798975483455897898966877925898398331205865054541188
Q gi|254780316|r 44 FTIVKVLSVERNPDLD-CAILRIDTGKHQEIQVVCGAPNVRVGLLGVWAPPGSCIPENNMIVNVRKIRGIESTGMMCSEK 122 (805)
Q Consensus 44 vvvg~v~~~~~hP~ad-l~v~~Vd~g~~~~~~IvcgA~Nv~~g~~V~~A~~Ga~lp~g~~~i~~~~irGv~S~GMlCS~~ 122 (805)
+|||+|++++|||+|| |++|+||+|+++.+||||||+|+++|++|++|++||+|| ++.+|+++++||++|+|||||++
T Consensus 1 vvvgkI~~~~~hP~adkL~~~~Vd~g~~~~~~Iv~ga~n~~~g~~vvva~~Gs~l~-~g~~i~~~~i~Gv~S~GMlcS~~ 79 (103)
T cd02796 1 VVVGKVLEVEPHPNADKLNVCKVDIGENKPLQIVCGAPNVRAGDKVVVALPGAVLP-GGLKIKKRKLRGVESEGMLCSAK 79 (103)
T ss_pred CEEEEEEEEEECCCCCEEEEEEEECCCCEEEEEECCCCHHHCCCEEEEECCCCEEC-CCCCCCCCEECCEECCCEECCHH
T ss_conf 98999999785899998899999858956999854998577798999972687942-77620320105721270786788
Q ss_pred HCCCCCCCCCEEEECCCCCCCCCH
Q ss_conf 769985477507816888888455
Q gi|254780316|r 123 ELMLSDDSASIMELPIDAPVGGRL 146 (805)
Q Consensus 123 ELgl~~~~~gI~~l~~~~~~G~~~ 146 (805)
|||++++++||++||+++++|+|+
T Consensus 80 ELGl~~~~~gi~~l~~~~~~G~~~ 103 (103)
T cd02796 80 ELGLGEDSDGIIELPEDAPVGTDI 103 (103)
T ss_pred HCCCCCCCCCEEECCCCCCCCCCC
T ss_conf 979998898779999999898979
No 12
>COG0073 ARC1 EMAP domain [General function prediction only]
Probab=99.95 E-value=5.2e-28 Score=217.96 Aligned_cols=120 Identities=38% Similarity=0.591 Sum_probs=110.5
Q ss_pred HHHCCCEEEEEECCC-CCCCEEEEEEEEEEECCCCC-CCEEEEECCCCC-EEEEECCCCCCCCCCEEEEECCCCEECCCC
Q ss_conf 874586042111246-56874899999975657998-708999759995-798975483455897898966877925898
Q gi|254780316|r 25 LTSIGLEVEKVDNRE-ALSPFTIVKVLSVERNPDLD-CAILRIDTGKHQ-EIQVVCGAPNVRVGLLGVWAPPGSCIPENN 101 (805)
Q Consensus 25 lt~~G~EVe~i~~~~-~~~~vvvg~v~~~~~hP~ad-l~v~~Vd~g~~~-~~~IvcgA~Nv~~g~~V~~A~~Ga~lp~g~ 101 (805)
++..|.|+|.+.... ....++||+|++++|||+|| |++|+||+|+++ .+||||||+|+++|+.|++|++|+++| ++
T Consensus 1 ~~~~~~e~e~i~~~~~~~~~l~vg~V~~~~~~p~adkL~~~~Vd~G~~~~~~qiv~G~~n~~~~~~vv~a~v~~v~~-~~ 79 (123)
T COG0073 1 LTRIGLEVEEIEIDDFAKVDLRVGKVVEAEPHPNADKLLVLKVDLGDEKEPRQIVCGAPNFYAGEKLVGAKVGAVLN-GG 79 (123)
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEEEEEEC-CC
T ss_conf 96322234411115444378189999981258997835799998089883789983362203761235377999976-77
Q ss_pred EEEEEEHHCCCCCCCHHHHHHHCCCCCCCCCEEEECCCCCCCCCH
Q ss_conf 398331205865054541188769985477507816888888455
Q gi|254780316|r 102 MIVNVRKIRGIESTGMMCSEKELMLSDDSASIMELPIDAPVGGRL 146 (805)
Q Consensus 102 ~~i~~~~irGv~S~GMlCS~~ELgl~~~~~gI~~l~~~~~~G~~~ 146 (805)
+||++|+||++|+|||||+.|+|+++.+.||+.+|++++.|.++
T Consensus 80 -~ikp~klrG~~S~GMics~~e~~~~~~~~~il~~~~~~~~g~~~ 123 (123)
T COG0073 80 -KLKPAKLRGVESEGMLLSAEELGLSDENVGILTLDEGVPPGTKV 123 (123)
T ss_pred -CCCCCEECCCEECEEEEECCCCCCCCCCCEEEECCCCCCCCCCC
T ss_conf -41632036830021798652388864456369678777888889
No 13
>pfam03147 FDX-ACB Ferredoxin-fold anticodon binding domain. This is the anticodon binding domain found in some phenylalanyl tRNA synthetases. The domain has a ferredoxin fold.
Probab=99.92 E-value=1.8e-24 Score=192.86 Aligned_cols=93 Identities=39% Similarity=0.735 Sum_probs=90.7
Q ss_pred CCCCCCEEEEEEEECCCCCHHHHHHHHHHCC-CCEEEEEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 9888720018999668879999999997111-003576989876367799884269999998477988899999999999
Q gi|254780316|r 711 SSLHPVKRDLAFIVDQHIPAGTLVNIIKNVD-RLIDDVTVFDVFQGKSLGEGKKSVAIQVLIQPLKDTFRDDDIRILMDR 789 (805)
Q Consensus 711 s~fP~v~RDls~iv~~~v~~~~I~~~i~~~~-~ll~~v~lfDvY~g~~i~~gkkSla~rl~fqs~~kTLtd~EI~~i~~~ 789 (805)
|+||++.|||||++|+++++++|.++|++.+ +++++|.+||+|+|+++++|+||+||||+||+.+|||||+||+.++++
T Consensus 1 SkfP~v~RDlS~~v~~~~~~~~i~~~i~~~~~~~l~~v~lfDvy~~~~i~~~kkSl~~r~~~qs~~kTLtd~eI~~~~~~ 80 (94)
T pfam03147 1 SKFPAVRRDLAFVVDEDVPAADILDVIRKAGGELLEDVELFDVYRGKKIPEGKKSLAFRLTFQSAERTLTDEEVNAIHEK 80 (94)
T ss_pred CCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCEEEEEEEEEECCCCCCCHHHHHHHHHH
T ss_conf 95988223089998898989999999986093707899999896399989997899999999999988799999999999
Q ss_pred HHHHHHHHHCCEEC
Q ss_conf 99999999511981
Q gi|254780316|r 790 IVENVVKKTNAVLR 803 (805)
Q Consensus 790 ii~~l~~k~ga~LR 803 (805)
|++.|+++|||+||
T Consensus 81 ii~~l~~k~~~~lR 94 (94)
T pfam03147 81 IVKALEKKFGAELR 94 (94)
T ss_pred HHHHHHHHHCCEEC
T ss_conf 99999998591869
No 14
>cd02153 tRNA_bindingDomain The tRNA binding domain is also known as the Myf domain in literature. This domain is found in a diverse collection of tRNA binding proteins, including prokaryotic phenylalanyl tRNA synthetases (PheRS), methionyl-tRNA synthetases (MetRS), human tyrosyl-tRNA synthetase(hTyrRS), Saccharomyces cerevisiae Arc1p, Thermus thermophilus CsaA, Aquifex aeolicus Trbp111, human p43 and human EMAP-II. PheRS, MetRS and hTyrRS aminoacylate their cognate tRNAs. Arc1p is a transactivator of yeast methionyl-tRNA and glutamyl-tRNA synthetases. The molecular chaperones Trbp111 and CsaA also contain this domain. CsaA has export related activities; Trbp111 is structure-specific recognizing the L-shape of the tRNA fold. This domain has general tRNA binding properties. In a subset of this family this domain has the added capability of a cytokine. For example the p43 component of the Human aminoacyl-tRNA synthetase complex is cleaved to release EMAP-II cytokine. EMAP-II has multi
Probab=99.91 E-value=3.1e-24 Score=191.15 Aligned_cols=93 Identities=42% Similarity=0.667 Sum_probs=85.3
Q ss_pred EEEEEEEEEEECCCCC-CCEEEEECCCCCEEEEECCCCCC-----CCCCEEEEECCCCEECCCCEEEEEEHHCCCCCCCH
Q ss_conf 4899999975657998-70899975999579897548345-----58978989668779258983983312058650545
Q gi|254780316|r 44 FTIVKVLSVERNPDLD-CAILRIDTGKHQEIQVVCGAPNV-----RVGLLGVWAPPGSCIPENNMIVNVRKIRGIESTGM 117 (805)
Q Consensus 44 vvvg~v~~~~~hP~ad-l~v~~Vd~g~~~~~~IvcgA~Nv-----~~g~~V~~A~~Ga~lp~g~~~i~~~~irGv~S~GM 117 (805)
++||+|++++|||+|| |++|+||+|+++.+||||||+|+ ..|.+|+++ ..|+++++||++|+||
T Consensus 1 l~Vg~I~~~~~hp~adkL~~~~Vd~G~~~~~~iv~g~~n~~~~~~l~g~~v~~~----------~ni~~~ki~Gv~S~GM 70 (99)
T cd02153 1 LRVGKIVEAEPHPNADKLYVLKVDIGEEKPRQIVSGAANVYPPEELVGKKVVVA----------VNLKPKKLRGVESEGM 70 (99)
T ss_pred CEEEEEEEEEECCCCCEEEEEEEECCCCCEEEEEECCCCCCCHHHHCCCEEEEE----------EEEEECEEECCCCCEE
T ss_conf 979999998858999877899999589948999955512068356159899999----------8230010405446549
Q ss_pred HHHHHHCCCCCCCCCEEEECCCCCCCCCH
Q ss_conf 41188769985477507816888888455
Q gi|254780316|r 118 MCSEKELMLSDDSASIMELPIDAPVGGRL 146 (805)
Q Consensus 118 lCS~~ELgl~~~~~gI~~l~~~~~~G~~~ 146 (805)
|||+.|||+++++.||+++|+++++|+++
T Consensus 71 l~s~~elg~~~~~~~il~~~~~~~~G~~v 99 (99)
T cd02153 71 LLSAEELGLEEGSVGILELPEDAPVGDRI 99 (99)
T ss_pred EEECHHCCCCCCCEEEEECCCCCCCCCCC
T ss_conf 98953348888977999899997788929
No 15
>pfam01588 tRNA_bind Putative tRNA binding domain. This domain is found in prokaryotic methionyl-tRNA synthetases, prokaryotic phenylalanyl tRNA synthetases the yeast GU4 nucleic-binding protein (G4p1 or p42, ARC1), human tyrosyl-tRNA synthetase, and endothelial-monocyte activating polypeptide II. G4p1 binds specifically to tRNA form a complex with methionyl-tRNA synthetases. In human tyrosyl-tRNA synthetase this domain may direct tRNA to the active site of the enzyme. This domain may perform a common function in tRNA aminoacylation.
Probab=99.84 E-value=2.3e-21 Score=170.87 Aligned_cols=93 Identities=35% Similarity=0.519 Sum_probs=83.0
Q ss_pred EEEEEEEEEEECCCCC-CCEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCEECCCCEEEEEEHHCCCCCCCHHHHHH
Q ss_conf 4899999975657998-708999759995798975483455897898966877925898398331205865054541188
Q gi|254780316|r 44 FTIVKVLSVERNPDLD-CAILRIDTGKHQEIQVVCGAPNVRVGLLGVWAPPGSCIPENNMIVNVRKIRGIESTGMMCSEK 122 (805)
Q Consensus 44 vvvg~v~~~~~hP~ad-l~v~~Vd~g~~~~~~IvcgA~Nv~~g~~V~~A~~Ga~lp~g~~~i~~~~irGv~S~GMlCS~~ 122 (805)
++||+|+++++||+|| |++|+||+|+ +.+||||||+|+.++..+ ++..++.++ + ++++||||++|+|||||+.
T Consensus 1 irVg~I~~~~~hp~adkL~~~~Vd~G~-~~~~ivsg~~~~~~~~~l-vg~~v~~~~-n---lk~~ki~Gv~S~GMlls~~ 74 (94)
T pfam01588 1 LRVGKVLEAEKHPNADKLLVLKVDVGE-EERQIVSGAVNVYPPEEL-VGKLVVVVA-N---LKPAKLRGVESEGMILSAE 74 (94)
T ss_pred CEEEEEEEEEECCCCCEEEEEEEECCC-CEEEEEECCCCEEEEEEE-EEEEEEEEC-C---CCCCCCCCCCCCEEEEEEE
T ss_conf 979999999989999878999999079-769999747543614136-610799940-7---7851497836888999888
Q ss_pred HCCCCCCCCCEEEECCCCCCCCC
Q ss_conf 76998547750781688888845
Q gi|254780316|r 123 ELMLSDDSASIMELPIDAPVGGR 145 (805)
Q Consensus 123 ELgl~~~~~gI~~l~~~~~~G~~ 145 (805)
| ++++.||+.+|+++++|+.
T Consensus 75 e---~~~~~~ll~~~~~~~~G~r 94 (94)
T pfam01588 75 E---DGGSVGLLEPPGDVPPGTR 94 (94)
T ss_pred C---CCCCEEEEECCCCCCCCCC
T ss_conf 5---7996899989999746989
No 16
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase; InterPro: IPR004530 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases . This family describes the mitochondrial phenylalanyl-tRNA synthetases. Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases.; GO: 0000166 nucleotide binding, 0004826 phenylalanine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006432 phenylalanyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=99.79 E-value=1.5e-18 Score=150.91 Aligned_cols=163 Identities=22% Similarity=0.356 Sum_probs=140.0
Q ss_pred CEEEECCCCCCCCCCCEEEEEECCE--EEEEEEEEECHHHHHHCCCCCC--E-EEEEEEHHHHH----------------
Q ss_conf 3033058865678981699998792--9999985477899996687997--8-99998787623----------------
Q gi|254780316|r 637 SLRFESGAPSWYHPGRSGIIKTSAE--IVLGYFGEFHPNILDFFGLSNP--I-CGFEVYLDSIP---------------- 695 (805)
Q Consensus 637 ~~~~~~~~~~~~hPgrsa~I~~~gk--~iiG~iG~ihP~i~~~~~i~~~--v-~~~EI~ld~L~---------------- 695 (805)
++++..+=.||-.|.---+|+..|+ .++| ||.+--.|+.+-|.+.. + |+|-+-||.|.
T Consensus 264 K~RW~~~YFP~T~PSWE~E~y~~~~WLE~~G-CG~~R~~~L~R~G~~~SetIGyAFG~GL~R~AM~LF~IPDIRLlWS~D 342 (460)
T TIGR00469 264 KVRWVDAYFPFTAPSWELEVYFKDEWLELLG-CGLIRQDVLLRAGVKQSETIGYAFGLGLDRLAMLLFDIPDIRLLWSRD 342 (460)
T ss_pred EEEEEECCCCCCCCCCEEEEEECCCEEEEEC-CCHHHHHHHHHCCCCCCCCCCEEECCCHHHHHHHHHCCCCEEEEEECC
T ss_conf 1557503388988840589888376556515-514677898845897333220000100889998873488615662045
Q ss_pred ------HHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCC------CHHHHHHHHHH-CCCCEEEEEEEEEEECCCCCCCC
Q ss_conf ------545202456631368988872001899966887------99999999971-11003576989876367799884
Q gi|254780316|r 696 ------ISQKKRTKTKKVVHLSSLHPVKRDLAFIVDQHI------PAGTLVNIIKN-VDRLIDDVTVFDVFQGKSLGEGK 762 (805)
Q Consensus 696 ------~~~~~~~~~~~~~~~s~fP~v~RDls~iv~~~v------~~~~I~~~i~~-~~~ll~~v~lfDvY~g~~i~~gk 762 (805)
.++...-..++|+|+|+||.+.||+||++|++. .-.++.+.||+ ||.++++|.|+|-|+..+ .|+
T Consensus 343 ~~F~~QFS~~dlh~~~~yKP~S~~P~~~~D~~FWLP~D~~~~~~~~~NDl~~~~R~~AGDlVE~~~LVD~F~HPK--TG~ 420 (460)
T TIGR00469 343 ERFLRQFSKKDLHLLTKYKPISKYPQSFRDLAFWLPEDKEVIAQVSENDLYDLVRSVAGDLVESVKLVDKFKHPK--TGK 420 (460)
T ss_pred CCHHHHHCCHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCHHHCCCCCCHHHHHHHHHHCCEEEEEEEEECCCCCC--CCC
T ss_conf 302333111023215676864578874020533188985434468833489999875134033567764135888--887
Q ss_pred EEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCEE
Q ss_conf 2699999984779888999999999999999999951198
Q gi|254780316|r 763 KSVAIQVLIQPLKDTFRDDDIRILMDRIVENVVKKTNAVL 802 (805)
Q Consensus 763 kSla~rl~fqs~~kTLtd~EI~~i~~~ii~~l~~k~ga~L 802 (805)
+|+.||+.||++|||||.+|||++++.|-+++.++|+++|
T Consensus 421 ~S~CyRI~Y~~M~R~LT~AEVN~~~~~~~S~~V~~y~V~~ 460 (460)
T TIGR00469 421 KSVCYRIVYRSMDRTLTNAEVNELQDQVASKLVDEYSVEL 460 (460)
T ss_pred CCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHEEECC
T ss_conf 3135886310223311056788898888642010101039
No 17
>KOG2783 consensus
Probab=99.79 E-value=8.1e-19 Score=152.74 Aligned_cols=182 Identities=21% Similarity=0.331 Sum_probs=148.6
Q ss_pred HHHHHHHHHHHHHCC-CCCCEEEECCCCCCCCCCCEEEEEECCE--EEEEEEEEECHHHHHHCCCCCCE-EEEEEEHHHH
Q ss_conf 887531111111014-5333033058865678981699998792--99999854778999966879978-9999878762
Q gi|254780316|r 619 FDAKADALSVIEPFV-SLDSLRFESGAPSWYHPGRSGIIKTSAE--IVLGYFGEFHPNILDFFGLSNPI-CGFEVYLDSI 694 (805)
Q Consensus 619 ~dlKg~v~~ll~~l~-~~~~~~~~~~~~~~~hPgrsa~I~~~gk--~iiG~iG~ihP~i~~~~~i~~~v-~~~EI~ld~L 694 (805)
.++|-.++.+...+. ....+++...-.++-||.---+|+..|+ .++| +|.+-..+++.-++.+.+ ++|-+.||.|
T Consensus 228 ~~lk~~l~~L~~~Lf~~~~~~rwV~~yfpft~ps~eleI~~~~~wlevlg-cgvi~~~il~~ag~~~~igwafglgLerL 306 (436)
T KOG2783 228 QHLKQTLEGLCDELFGKEVEYRWVDAYFPFTHPSWELEIYFKGEWLEVLG-CGVMRQRLLKRAGLNNYIGWAFGLGLERL 306 (436)
T ss_pred HHHHHHHHHHHHHHCCCHHHEEHEEEECCCCCCCEEEEEEECCCCHHHHC-CCHHHHHHHHHCCCCCEEEEEEECCHHHH
T ss_conf 99999998899986260441101105766689875899996587676515-50567788752041100345650467888
Q ss_pred HHH-------------------HHCCCCC-CCCCCCCCCCCCEEEEEEEECC--CCCHHHHHHHHHHC-CCCEEEEEEEE
Q ss_conf 354-------------------5202456-6313689888720018999668--87999999999711-10035769898
Q gi|254780316|r 695 PIS-------------------QKKRTKT-KKVVHLSSLHPVKRDLAFIVDQ--HIPAGTLVNIIKNV-DRLIDDVTVFD 751 (805)
Q Consensus 695 ~~~-------------------~~~~~~~-~~~~~~s~fP~v~RDls~iv~~--~v~~~~I~~~i~~~-~~ll~~v~lfD 751 (805)
... +-...+. ++|+|+|+||+..+|+||++|+ +..-.+..+++|.+ |.++++|.+.|
T Consensus 307 AMll~~IpDiRlfWs~DeRFlkqF~~g~I~~~FKp~SkYP~c~~DiSFWl~~~~~f~endf~~viR~V~gDlVesV~lid 386 (436)
T KOG2783 307 AMLLFDIPDIRLFWSFDERFLKQFSPGKIEPKFKPYSKYPPCYKDISFWLPQDKGFDENDFYDVIRTVAGDLVESVKLID 386 (436)
T ss_pred HHHHHCCCCHHEEECCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88873676221011222677873185546646565455897524416860665588825899999987351645532565
Q ss_pred EEECCCCCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCEEC
Q ss_conf 7636779988426999999847798889999999999999999999511981
Q gi|254780316|r 752 VFQGKSLGEGKKSVAIQVLIQPLKDTFRDDDIRILMDRIVENVVKKTNAVLR 803 (805)
Q Consensus 752 vY~g~~i~~gkkSla~rl~fqs~~kTLtd~EI~~i~~~ii~~l~~k~ga~LR 803 (805)
.|+.++ .||+|+.||++||+.|||||.+|||.+++++-+.+.+.|+.++|
T Consensus 387 ~F~hpK--tgk~S~CYRi~YrsmeR~LTq~EVn~iq~q~r~~~~~~l~VelR 436 (436)
T KOG2783 387 QFTHPK--TGKTSLCYRIVYRSMERALTQEEVNSIQSQIRSELVQSLGVELR 436 (436)
T ss_pred HCCCCC--CCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECC
T ss_conf 404776--67422589876576665542999999999999999886270119
No 18
>pfam03484 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=99.71 E-value=7.2e-18 Score=146.03 Aligned_cols=69 Identities=42% Similarity=0.749 Sum_probs=66.9
Q ss_pred CCCEECCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 310000431133331134587899999998402221034562366403454334402567676765352
Q gi|254780316|r 401 PRKIVFMNSEVKRLSGIDVPIEDSLRILERLGFSVIGEYDKFEVSVPSWRQDVEEKADLVEEILRIYGV 469 (805)
Q Consensus 401 ~~~I~l~~~~i~~ilG~~i~~~ei~~iL~~Lgf~v~~~~~~~~V~vPs~R~DI~~e~DLiEEIaRiyGY 469 (805)
|++|.++.++++++||++++.+++.++|++|||+++.+++.|.|++|+||+||.+++||+|||||+|||
T Consensus 1 ~~~i~~~~~~i~~~lG~~i~~~~i~~~L~~lg~~~~~~~~~~~v~vPs~R~Di~~~~DliEEi~R~~Gy 69 (69)
T pfam03484 1 PRVITLDLEKINRLLGIELSPEEIKKILKRLGFKVEEDEDTLKVTVPSYRPDILHEVDLIEEVARLYGY 69 (69)
T ss_pred CEEEEECHHHHHHHHCCCCCHHHHHHHHHHCCCEEEECCCEEEEECCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf 958998799999971888799999999998699899479869998999857668625699999998089
No 19
>cd02799 tRNA_bind_EMAP-II_like tRNA-binding-domain-containing EMAP2-like proteins. This family contains a diverse fraction of tRNA binding proteins, including Caenorhabditis elegans methionyl-tRNA synthetase (CeMetRS), human tyrosyl- tRNA synthetase (hTyrRS), Saccharomyces cerevisiae Arc1p, human p43 and EMAP2. CeMetRS and hTyrRS aminoacylate their cognate tRNAs. Arc1p is a transactivator of yeast methionyl-tRNA and glutamyl-tRNA synthetases. This domain has general tRNA binding properties. In a subset of this family this domain has the added capability of a cytokine. For example the p43 component of the Human aminoacyl-tRNA synthetase complex is cleaved to release EMAP-II cytokine. EMAP-II has multiple activities during apoptosis, angiogenesis and inflammation and participates in malignant transformation. A EMAP-II-like cytokine also is released from hTyrRS upon cleavage. The active cytokine heptapeptide locates to this domain.
Probab=99.68 E-value=4.3e-17 Score=140.47 Aligned_cols=95 Identities=25% Similarity=0.381 Sum_probs=72.0
Q ss_pred CEEEEEEEEEEECCCCC-CCEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCEECCCCEEEEEEHHCCCCCCCHHHHH
Q ss_conf 74899999975657998-70899975999579897548345589789896687792589839833120586505454118
Q gi|254780316|r 43 PFTIVKVLSVERNPDLD-CAILRIDTGKHQEIQVVCGAPNVRVGLLGVWAPPGSCIPENNMIVNVRKIRGIESTGMMCSE 121 (805)
Q Consensus 43 ~vvvg~v~~~~~hP~ad-l~v~~Vd~g~~~~~~IvcgA~Nv~~g~~V~~A~~Ga~lp~g~~~i~~~~irGv~S~GMlCS~ 121 (805)
.++||+|+++++||||| |++|+||+|+++.+|||||+.|... +-.++|.+.. .-..+|++||||++|+||||++
T Consensus 7 dirVG~I~~~e~hp~adkL~~~~VD~G~~~~r~ivsg~~~~y~----~e~L~gk~v~-~v~Nlkp~kirG~~SegMiL~a 81 (105)
T cd02799 7 DIRVGKILKVRKHPDADSLYVEEIDLGEEEPRTIVSGLVKFVP----LEQMQNRLVV-VLCNLKPRKMRGVKSQGMVLCA 81 (105)
T ss_pred EEEEEEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCCC----HHHHCCCEEE-EEEEECCCCCCCCCCEEEEEEE
T ss_conf 9999999999989998854799998289723899970034249----8893787589-9963166207892650699997
Q ss_pred HHCCCCCCCCCE--EEECCCCCCCCCH
Q ss_conf 876998547750--7816888888455
Q gi|254780316|r 122 KELMLSDDSASI--MELPIDAPVGGRL 146 (805)
Q Consensus 122 ~ELgl~~~~~gI--~~l~~~~~~G~~~ 146 (805)
. .++++++ +..|+++++|+.+
T Consensus 82 ~----~~d~~~v~ll~p~~~~~~G~rI 104 (105)
T cd02799 82 S----NADHEKVELLEPPEGAKPGERV 104 (105)
T ss_pred E----CCCCCEEEEECCCCCCCCCCCC
T ss_conf 8----4999879996389998898856
No 20
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=99.66 E-value=5.8e-17 Score=139.58 Aligned_cols=69 Identities=46% Similarity=0.752 Sum_probs=64.6
Q ss_pred CCCEECCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCC--CCCCEEEECCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 31000043113333113458789999999840222103--4562366403454334402567676765352
Q gi|254780316|r 401 PRKIVFMNSEVKRLSGIDVPIEDSLRILERLGFSVIGE--YDKFEVSVPSWRQDVEEKADLVEEILRIYGV 469 (805)
Q Consensus 401 ~~~I~l~~~~i~~ilG~~i~~~ei~~iL~~Lgf~v~~~--~~~~~V~vPs~R~DI~~e~DLiEEIaRiyGY 469 (805)
+++|.++.++++++||++++.+++.++|++|||+++.. ++.|.|++|+||+||.+++||+|||||+|||
T Consensus 1 ~~~i~~~~~~i~~~lG~~i~~~~i~~~L~~lg~~~~~~~~~~~~~v~~Ps~R~Di~~~~DliEEi~R~~Gy 71 (71)
T smart00874 1 PRTITLRRERINRLLGLDLSAEEIEEILKRLGFEVEVSGDDDTLEVTVPSYRFDILIEADLIEEVARIYGY 71 (71)
T ss_pred CEEEEECHHHHHHHHCCCCCHHHHHHHHHHCCCEEEECCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf 96899879999987088879999999999869989965789759997899706559734699988898079
No 21
>cd02800 tRNA_bind_EcMetRS_like tRNA-binding-domain-containing Escherichia coli methionyl-tRNA synthetase (EcMetRS)-like proteins. This family includes EcMetRS and Aquifex aeolicus Trbp111 (AaTrbp111). This domain has general tRNA binding properties. MetRS aminoacylates methionine transfer RNAs (tRNAmet). AaTrbp111 is structure-specific molecular chaperone recognizing the L-shape of the tRNA fold. AaTrbp111 plays a role in nuclear trafficking of tRNAs. The functional unit of EcMetRs and AaTrbp111 is a homodimer, this domain acts as the dimerization domain.
Probab=99.39 E-value=2.3e-13 Score=113.98 Aligned_cols=92 Identities=26% Similarity=0.369 Sum_probs=68.2
Q ss_pred CEEEEEEEEEEECCCCC-CCEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCEECCCCEEEEEEHHCCCCCCCHHHHH
Q ss_conf 74899999975657998-70899975999579897548345589789896687792589839833120586505454118
Q gi|254780316|r 43 PFTIVKVLSVERNPDLD-CAILRIDTGKHQEIQVVCGAPNVRVGLLGVWAPPGSCIPENNMIVNVRKIRGIESTGMMCSE 121 (805)
Q Consensus 43 ~vvvg~v~~~~~hP~ad-l~v~~Vd~g~~~~~~IvcgA~Nv~~g~~V~~A~~Ga~lp~g~~~i~~~~irGv~S~GMlCS~ 121 (805)
.+.||+|+++++||+|| |++++||+|+ +.+|||||..+. |-|-.++|.++. .-..++++||||++|+||+|++
T Consensus 10 DirVG~I~~ve~~p~a~kL~~~~VD~G~-~~r~ivsgi~~~----y~~eeLiGk~v~-~v~Nlkp~ki~G~~SegmiL~a 83 (105)
T cd02800 10 DLRVGKVLEAERVEGSDKLLKLTVDLGE-EERQIVSGIAKF----YPPEELVGKKVV-VVANLKPRKLRGVESQGMILAA 83 (105)
T ss_pred EEEEEEEEEEEECCCCCEEEEEEEEECC-CCEEEEECCCCC----CCHHHHCCCEEE-EEEEECCCCCCCCCCCEEEEEE
T ss_conf 1899999999977885303999998478-527999846551----298995899899-9982158338991276899988
Q ss_pred HHCCCCCCCCC--EEEECCCCCCCCCH
Q ss_conf 87699854775--07816888888455
Q gi|254780316|r 122 KELMLSDDSAS--IMELPIDAPVGGRL 146 (805)
Q Consensus 122 ~ELgl~~~~~g--I~~l~~~~~~G~~~ 146 (805)
.+ ..+ ++..|+++++|+.+
T Consensus 84 ~~------~~~v~ll~p~~~~~~G~~v 104 (105)
T cd02800 84 ED------GGKLKLLTPDEEVEPGSRV 104 (105)
T ss_pred EC------CCEEEEEECCCCCCCCCCC
T ss_conf 07------9999999379998898756
No 22
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=99.34 E-value=2.3e-12 Score=106.93 Aligned_cols=22 Identities=14% Similarity=0.205 Sum_probs=10.9
Q ss_pred EECCCCHHHHHHCCCCCHHHHH
Q ss_conf 0004311333311345878999
Q gi|254780316|r 404 IVFMNSEVKRLSGIDVPIEDSL 425 (805)
Q Consensus 404 I~l~~~~i~~ilG~~i~~~ei~ 425 (805)
+.++-.+..+=+|.-+...++.
T Consensus 293 ~~~~g~KmSKS~Gn~i~~~~~~ 314 (644)
T PRK12267 293 WLMKDGKMSKSKGNVVDPEELV 314 (644)
T ss_pred EECCCCEECCCCCCEECHHHHH
T ss_conf 8717860055368422379998
No 23
>COG3382 Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only]
Probab=99.33 E-value=1.1e-11 Score=102.00 Aligned_cols=141 Identities=21% Similarity=0.233 Sum_probs=116.9
Q ss_pred CCCCCHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEECCCCCCHHHHHHHCCCCCCCCEEEE
Q ss_conf 5566377878888640-132103999998999860870000010223332688623554311455420112454320000
Q gi|254780316|r 227 NNVAPNWMRQRLKAVG-LRSISALVDITNYVSLDRGYPSHVFDASRISDVLTVRRACSGEKILALDNQEYDLSPDNVVIA 305 (805)
Q Consensus 227 ~~~SP~wl~~rL~~~G-ir~inniVDitNyvmle~GqPlHafD~dki~~~i~vr~a~~~E~~~~Ld~~e~~L~~~~lvI~ 305 (805)
..+|-.-|..|..+=+ +-.||++||+-|.+-|+++.|+-+||+||+.|++.++.|.-||.|.+|.++.....++.+|.+
T Consensus 80 ~r~S~EALlrRv~kg~~lp~InpvVD~yNa~Sl~y~vPig~~D~d~~~g~lrL~~a~ggE~f~~lg~~~~~~~~geiv~~ 159 (229)
T COG3382 80 TRPSAEALLRRVLKGNSLPRINPVVDIYNAASLKYAVPIGGYDADKIVGDLRLTLADGGETFDTLGAKNEPPLEGEIVLV 159 (229)
T ss_pred CCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHCCCCEEEECCCCCEEECCCCCCCCCCCCCEEEE
T ss_conf 89729999999874898666562554105777762487441138770798169863687254324677878999947997
Q ss_pred CCCCCCC-CHHHCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 2567631-001113553120136726999971578788877887616540155441345530135889998887521233
Q gi|254780316|r 306 SDGRIQS-IAGIIGGKHAGCDDNTTDVLVEVALWDPINIARSGKNLGIITDSRYRFERGVDLQGMIPVLKHIVSLILSLC 384 (805)
Q Consensus 306 d~~~~ia-laGImGg~~s~v~~~T~~illEsA~F~p~~Ir~tar~l~l~TdaS~RfERgvd~~~~~~al~r~~~Li~e~~ 384 (805)
|++++.+ .=..-.|..|.||++|+|+|+=.+.-+. +.-+....|++.++.++.+++
T Consensus 160 Dd~G~~~r~~~~Rds~rT~vt~~Tk~~l~I~e~vp~-----------------------~~~~~l~~a~~~l~~~l~~~~ 216 (229)
T COG3382 160 DDEGAFCRRWNWRDSVRTMVTESTKNVLLIAEGVPG-----------------------VEVEDLVEALDSLADLLEKLL 216 (229)
T ss_pred CCCCCEEEECCCCCCEEEEHHHCCCEEEEEEECCCC-----------------------CCHHHHHHHHHHHHHHHHHHC
T ss_conf 489880410454245055511056627898865898-----------------------568999999999999999865
Q ss_pred CCCCCC
Q ss_conf 455565
Q gi|254780316|r 385 GGTASD 390 (805)
Q Consensus 385 gg~~~~ 390 (805)
||+...
T Consensus 217 gG~~~~ 222 (229)
T COG3382 217 GGTRAV 222 (229)
T ss_pred CCCCCC
T ss_conf 886552
No 24
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=99.32 E-value=4.7e-12 Score=104.75 Aligned_cols=16 Identities=13% Similarity=0.104 Sum_probs=8.0
Q ss_pred HHHHHHHHCCCCCCCC
Q ss_conf 9988875212334555
Q gi|254780316|r 373 LKHIVSLILSLCGGTA 388 (805)
Q Consensus 373 l~r~~~Li~e~~gg~~ 388 (805)
+.|.+.++...++|.+
T Consensus 388 ~~R~~~~~~k~~~g~v 403 (666)
T PRK00133 388 ASRAAGFINKRFDGKL 403 (666)
T ss_pred HHHHHHHHHHHCCCCC
T ss_conf 9999999998659978
No 25
>cd02798 tRNA_bind_CsaA tRNA-binding-domain-containing CsaA-like proteins. CsaA is a molecular chaperone with export related activities. CsaA has a putative tRNA binding activity. The functional unit of CsaA is a homodimer and this domain acts as a dimerization domain.
Probab=99.21 E-value=3e-11 Score=99.06 Aligned_cols=87 Identities=17% Similarity=0.244 Sum_probs=68.4
Q ss_pred CEEEEEEEEEEECCCC-C-CCEEEEECCCCCEEEEECCCCCC-----CCCCEEEEECCCCEECCCCEEEEEEHHCCCCCC
Q ss_conf 7489999997565799-8-70899975999579897548345-----589789896687792589839833120586505
Q gi|254780316|r 43 PFTIVKVLSVERNPDL-D-CAILRIDTGKHQEIQVVCGAPNV-----RVGLLGVWAPPGSCIPENNMIVNVRKIRGIEST 115 (805)
Q Consensus 43 ~vvvg~v~~~~~hP~a-d-l~v~~Vd~g~~~~~~IvcgA~Nv-----~~g~~V~~A~~Ga~lp~g~~~i~~~~irGv~S~ 115 (805)
.+.||+|+++++||+| | |.+++||+|+.+.+|||+|.... =.|.+|++. .-+|++|+||++|+
T Consensus 10 DiRVg~I~~~e~~p~a~dkL~~l~vD~G~~~~r~ivsgi~~~y~~eeL~Gk~Vvvv----------~NLkp~ki~G~~Se 79 (107)
T cd02798 10 DLRVGTIVEVEDFPEARKPAYKLKVDFGEIGVKQSSAQITKYYKPEELIGRQVVAV----------VNFPPKQIAGVLSE 79 (107)
T ss_pred EEEEEEEEEEEECCCCCCCEEEEEEECCCCEEEEEEEHHHHCCCHHHHCCCEEEEE----------ECCCCCEECCCCCC
T ss_conf 27999999999878877613899996189708999990100279899689989999----------95688237990255
Q ss_pred CHHHHHHHCCCCCCCCC---EEEECCCCCCCCC
Q ss_conf 45411887699854775---0781688888845
Q gi|254780316|r 116 GMMCSEKELMLSDDSAS---IMELPIDAPVGGR 145 (805)
Q Consensus 116 GMlCS~~ELgl~~~~~g---I~~l~~~~~~G~~ 145 (805)
||+.++. +.+| ++.-++++++|+.
T Consensus 80 gMiL~a~------~~~~~~~ll~p~~~~~~G~r 106 (107)
T cd02798 80 VLVLGAD------DEGGEVVLLVPDREVPNGAK 106 (107)
T ss_pred EEEEEEE------CCCCEEEEEECCCCCCCCCC
T ss_conf 8999888------79981999818999879886
No 26
>PRK10089 hypothetical protein; Provisional
Probab=99.21 E-value=9.9e-12 Score=102.46 Aligned_cols=88 Identities=26% Similarity=0.411 Sum_probs=63.9
Q ss_pred CEEEEEEEEEEECCCCC-CCEEEEECCCCCEEEEECCCCCC-----CCCCEEEEECCCCEECCCCEEEEEEHHCCCCCCC
Q ss_conf 74899999975657998-70899975999579897548345-----5897898966877925898398331205865054
Q gi|254780316|r 43 PFTIVKVLSVERNPDLD-CAILRIDTGKHQEIQVVCGAPNV-----RVGLLGVWAPPGSCIPENNMIVNVRKIRGIESTG 116 (805)
Q Consensus 43 ~vvvg~v~~~~~hP~ad-l~v~~Vd~g~~~~~~IvcgA~Nv-----~~g~~V~~A~~Ga~lp~g~~~i~~~~irGv~S~G 116 (805)
.+.||+|+++++||+|| |.+++||+|+ +.+|+|||.... -.|.+|++. .-++++|+||+.|+|
T Consensus 13 DiRVG~I~~~e~~~~a~kL~~~~VD~G~-~~~~ivsgi~~~y~~eeLvGk~v~~v----------~NLkp~ki~G~~Seg 81 (110)
T PRK10089 13 EMRVGKIVEVKRHENADKLYIVQVDVGE-KTLQTVTSLVPYYSEEELMGKTVVVL----------CNLQKAKMRGETSEC 81 (110)
T ss_pred EEEEEEEEEEEECCCCCCCEEEEEECCC-CCCEEEEECCCCCCHHHHCCCEEEEE----------ECCCCCCCCCCCCCE
T ss_conf 2799999998888998710899998189-75189998300379899289989999----------876753218931525
Q ss_pred H-HHHHHHCCCCCCCCCE-EEEC-CCCCCCCCH
Q ss_conf 5-4118876998547750-7816-888888455
Q gi|254780316|r 117 M-MCSEKELMLSDDSASI-MELP-IDAPVGGRL 146 (805)
Q Consensus 117 M-lCS~~ELgl~~~~~gI-~~l~-~~~~~G~~~ 146 (805)
| ||+..| +...+ +.-| +++++|+.+
T Consensus 82 MiL~a~~~-----dg~~~~ll~p~~~v~~G~ri 109 (110)
T PRK10089 82 MLLCAETD-----DGSESVLLTPERMMPAGVRI 109 (110)
T ss_pred EEEEEECC-----CCCEEEEECCCCCCCCCCCC
T ss_conf 99998869-----99869996799999898851
No 27
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=99.06 E-value=3.7e-09 Score=84.16 Aligned_cols=191 Identities=15% Similarity=0.171 Sum_probs=136.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH---HHHHHHH-------HHCCCCCCCCCC-------------
Q ss_conf 76789988954678988787787740232100482576---5520000-------000024677643-------------
Q gi|254780316|r 484 DKRNLSLQQSRTRYVKRVLASRAMMEVVNWSFISKEQS---VLFGGGQ-------RELEILNPISAD------------- 540 (805)
Q Consensus 484 ~~~~~~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~---~~~~~~~-------~~i~l~NPlS~e------------- 540 (805)
..+.+.+..++.+.+|++++++||.|+ +-+++..+.- .+|.+.+ +..-|.||-..+
T Consensus 240 ~~g~~Hp~~~~~~~~r~i~~~mGF~e~-~g~~ve~~fwNfdaLf~Pq~HPARd~~Dtf~l~~~~~~~lp~~~~~~Vk~~H 318 (501)
T PRK04172 240 YPGKKHPYREFIEEVRDILVEMGFEEV-KGPIVETEFWNFDALFQPQDHPAREMQDTFYLKYPSKGELPEELVERVKEVH 318 (501)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCEEE-ECCCEECCCCCHHHHCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf 988748899999999999997897685-3661010000334305898998555445378657654557378898899987
Q ss_pred ---------------------CCCCCCHHHCHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCC----CEEHHHHCCCC
Q ss_conf ---------------------21015122110677643210158611345430244447775443----10002210354
Q gi|254780316|r 541 ---------------------MSNMRTSLLPGLLKATGRNVDRAIADFAIFEVSHVYENDTPEGQ----KYMAAGIRKGS 595 (805)
Q Consensus 541 ---------------------~s~lR~SLlp~LL~~~~~N~~r~~~~i~lFEiG~Vf~~~~~~~~----~~~~~~~~~~~ 595 (805)
..+|||.--+--.+.++. +..+.+++|=+|+||+++..... -+.+-|+.
T Consensus 319 E~Gg~~gS~Gw~y~w~~~~~~~~~lRthtt~~~~r~l~~---~~~~p~~~f~~~rvfR~e~~d~tH~~~F~Q~eg~v--- 392 (501)
T PRK04172 319 EHGGDTGSRGWGYKWDEDIAKRLVLRTHTTALSARYLAE---RPEPPGKYFSIGRVFRPETIDATHLPEFYQLEGIV--- 392 (501)
T ss_pred HCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHH---CCCCCEEEECCCCEEECCCCCCCCCCEEEEEEEEE---
T ss_conf 427767887767777855664301043674667999974---68998357356505426888865441332224899---
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCEEEEEECCE--EEEEEEEEECHH
Q ss_conf 310124620234544333314688875311111110145333033058865678981699998792--999998547789
Q gi|254780316|r 596 SGIEGSGRLWSDKSEERCRFVDLFDAKADALSVIEPFVSLDSLRFESGAPSWYHPGRSGIIKTSAE--IVLGYFGEFHPN 673 (805)
Q Consensus 596 ~~~~~~g~~~~~~~~~~~~~~df~dlKg~v~~ll~~l~~~~~~~~~~~~~~~~hPgrsa~I~~~gk--~iiG~iG~ihP~ 673 (805)
-...+.|-++||.+..++..+|. ..++|.++=.||-.|..-..++..+. .-+|-.|.+||+
T Consensus 393 ----------------~~~~~~~~~L~g~l~~f~~~~g~-~~~rfrp~yfPftEPs~E~~~~~~~~~WiE~~g~G~~~pe 455 (501)
T PRK04172 393 ----------------MGEDVSFRHLLGILKEFYKRLGF-EEVKFRPAYFPFTEPSVEVEVYHPGLGWVELGGAGIFRPE 455 (501)
T ss_pred ----------------ECCCCCHHHHHHHHHHHHHHHCC-CCEEECCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCHH
T ss_conf ----------------84888799999999999998588-6078679989989982789999579986998267578889
Q ss_pred HHHHCCCCCCEEEEEEEHHHHHHHH
Q ss_conf 9996687997899998787623545
Q gi|254780316|r 674 ILDFFGLSNPICGFEVYLDSIPISQ 698 (805)
Q Consensus 674 i~~~~~i~~~v~~~EI~ld~L~~~~ 698 (805)
+++.+|++.++++|-+-++.+....
T Consensus 456 vl~~~g~~~~~~a~G~g~eR~am~~ 480 (501)
T PRK04172 456 VTEPLGIDVPVLAWGIGIDRLAMLR 480 (501)
T ss_pred HHHHCCCCCCEEEEEECHHHHHHHH
T ss_conf 9975599987478751599999998
No 28
>pfam01409 tRNA-synt_2d tRNA synthetases class II core domain (F). Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only phenylalanyl-tRNA synthetases. This is the core catalytic domain.
Probab=99.02 E-value=9.7e-09 Score=81.22 Aligned_cols=191 Identities=17% Similarity=0.206 Sum_probs=134.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH-HHHH-HH-------HHHCCCCCCCCCCCCCCCCHHHCHHHHH
Q ss_conf 6789988954678988787787740232100482576-5520-00-------0000024677643210151221106776
Q gi|254780316|r 485 KRNLSLQQSRTRYVKRVLASRAMMEVVNWSFISKEQS-VLFG-GG-------QRELEILNPISADMSNMRTSLLPGLLKA 555 (805)
Q Consensus 485 ~~~~~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~-~~~~-~~-------~~~i~l~NPlS~e~s~lR~SLlp~LL~~ 555 (805)
.+...+.....+++++.+.++||.++-.--..+..++ +.++ +. .+..=+.+|......+|||.--+.-.+.
T Consensus 13 ~G~~HPi~~~~~~i~~~f~~~GF~~~~g~eves~~~NFDaLn~P~dHPaR~~~DTfy~~~~~~~~~~vLRtHTS~~q~r~ 92 (243)
T pfam01409 13 PGGLHPLTRVLEEIRDIFLSMGFEEVEGPEVESDFYNFDALNIPQDHPARDMQDTFYLKKPLKARRLLLRTHTTPVQART 92 (243)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCEEECCCCCHHHHHH
T ss_conf 99858599999999999987798687698356427777755789889876767603433666676865768798899999
Q ss_pred HHHHCCCCCCHHHHHHHCCCCCCCCCCCCC----EEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 432101586113454302444477754431----0002210354310124620234544333314688875311111110
Q gi|254780316|r 556 TGRNVDRAIADFAIFEVSHVYENDTPEGQK----YMAAGIRKGSSGIEGSGRLWSDKSEERCRFVDLFDAKADALSVIEP 631 (805)
Q Consensus 556 ~~~N~~r~~~~i~lFEiG~Vf~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~df~dlKg~v~~ll~~ 631 (805)
++.| ..+.+|+|-+|+||+++.....- +.+.|+. -.+.+.|-++||.++.++..
T Consensus 93 l~~~---~~~p~r~~~~grvyR~d~~DatH~~~FhQ~Eg~v-------------------vd~~it~~~Lk~~l~~~~~~ 150 (243)
T pfam01409 93 LAEK---NKPPIKIFSIGRVFRRDQVDATHLPEFHQVEGLV-------------------VDENVSFADLKGVLEEFLRK 150 (243)
T ss_pred HHHC---CCCCEEEECCCEEEECCCCCCCCCCEEEEEEEEE-------------------ECCCCCHHHHHHHHHHHHHH
T ss_conf 9742---7998489814313325889843153105755789-------------------65777899999999999999
Q ss_pred CC-CCCCEEEECCCCCCCCCCCEEEEEE--CCE-EEEEEEEEECHHHHHHCCCC--CCEEEEEEEHHHHHHH
Q ss_conf 14-5333033058865678981699998--792-99999854778999966879--9789999878762354
Q gi|254780316|r 632 FV-SLDSLRFESGAPSWYHPGRSGIIKT--SAE-IVLGYFGEFHPNILDFFGLS--NPICGFEVYLDSIPIS 697 (805)
Q Consensus 632 l~-~~~~~~~~~~~~~~~hPgrsa~I~~--~gk-~iiG~iG~ihP~i~~~~~i~--~~v~~~EI~ld~L~~~ 697 (805)
++ ..-++++.++-.|+-.|+--.+++. +++ .-+|-+|.+||+++++.|+. .+.++|-+-+|.|...
T Consensus 151 lfg~~~~~R~rp~yFPFTePS~Evdv~~~~~~~WlEi~G~Gmv~p~vl~~~gid~~~~g~AfG~GlERlaMl 222 (243)
T pfam01409 151 FFGFEVKVRFRPSYFPFTEPSAEVDVYCCKGGGWIEIGGAGMVHPNVLEAVGIDEDYPGFAFGLGVERLAML 222 (243)
T ss_pred HCCCCCEEEECCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCHHHHHHCCCCCCCEEEEEEECHHHHHHH
T ss_conf 739973798678869999986179999964997258750366678899866989897699985348899999
No 29
>COG2517 Predicted RNA-binding protein containing a C-terminal EMAP domain [General function prediction only]
Probab=98.98 E-value=1.3e-09 Score=87.52 Aligned_cols=68 Identities=26% Similarity=0.397 Sum_probs=61.6
Q ss_pred CCEEEEEEEEEEECCCCC-CCEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCEECCCCEEEEEEHHCCCCCCCHHHH
Q ss_conf 874899999975657998-7089997599957989754834558978989668779258983983312058650545411
Q gi|254780316|r 42 SPFTIVKVLSVERNPDLD-CAILRIDTGKHQEIQVVCGAPNVRVGLLGVWAPPGSCIPENNMIVNVRKIRGIESTGMMCS 120 (805)
Q Consensus 42 ~~vvvg~v~~~~~hP~ad-l~v~~Vd~g~~~~~~IvcgA~Nv~~g~~V~~A~~Ga~lp~g~~~i~~~~irGv~S~GMlCS 120 (805)
-.+++|+|.++.+||+|| |++|-||+|. ..++|||..--|++|.+|+||+ || ++.+-|+.|+||+|-
T Consensus 120 V~~vvGEV~Sv~~hp~aD~L~v~vvn~G~-r~~tVVTN~~~vreg~~vaVAl----LP-------Pr~F~gvvSeGMFlg 187 (219)
T COG2517 120 VDIVVGEVMSVGKHPNADKLLVTVVNIGG-RAVTVVTNDLDVREGDRVAVAL----LP-------PRNFFGVVSEGMFLG 187 (219)
T ss_pred EEEEEEEEEECCCCCCCCCEEEEEEECCC-EEEEEEECCCCCCCCCEEEEEE----CC-------HHHHCCCCCCCEEEC
T ss_conf 88876323422568987715999982188-4789970652211388779996----38-------067445013525631
Q ss_pred H
Q ss_conf 8
Q gi|254780316|r 121 E 121 (805)
Q Consensus 121 ~ 121 (805)
.
T Consensus 188 ~ 188 (219)
T COG2517 188 A 188 (219)
T ss_pred C
T ss_conf 1
No 30
>PTZ00326 phenylalanyl-tRNA synthetase; Provisional
Probab=98.95 E-value=5.3e-08 Score=75.99 Aligned_cols=192 Identities=16% Similarity=0.194 Sum_probs=128.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH---HHHHHH-------HHHCCCCCCCCCC-------------
Q ss_conf 76789988954678988787787740232100482576---552000-------0000024677643-------------
Q gi|254780316|r 484 DKRNLSLQQSRTRYVKRVLASRAMMEVVNWSFISKEQS---VLFGGG-------QRELEILNPISAD------------- 540 (805)
Q Consensus 484 ~~~~~~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~---~~~~~~-------~~~i~l~NPlS~e------------- 540 (805)
..+...+..++.+.+|++++++||.|+-+-.++..+.- .+|.+. .+..-|.+|-..+
T Consensus 237 ~~g~~hp~~~~~~~~r~if~~mGF~E~~~~~~ves~fwNfDaLf~Pq~HPARd~~DTF~l~~p~~~~~~~~~~~~~Vk~v 316 (505)
T PTZ00326 237 SMGNLHPLLKVRQEFREIFMEMGFEEMPTNRWVESSFWNFDALFIPQQHPARDLQDTFFLSKPETSKFLDAEYVERVKAV 316 (505)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCEECCCCCEEEECCCCCHHHCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf 87766889999999999999779767668971331321311104898998665233477447542456878999988888
Q ss_pred ---------------------CCCCCCHHHCHHHHHHHH---HC--CCCCCHHHHHHHCCCCCCCCCCCC----CEEHHH
Q ss_conf ---------------------210151221106776432---10--158611345430244447775443----100022
Q gi|254780316|r 541 ---------------------MSNMRTSLLPGLLKATGR---NV--DRAIADFAIFEVSHVYENDTPEGQ----KYMAAG 590 (805)
Q Consensus 541 ---------------------~s~lR~SLlp~LL~~~~~---N~--~r~~~~i~lFEiG~Vf~~~~~~~~----~~~~~~ 590 (805)
..+|||.--+--.+.+.+ +. .+.....++|-+|+||+++..... -+.+-|
T Consensus 317 He~G~~gs~Gw~y~W~~~~a~~~~LRthTt~vs~r~l~~~~~~~~~~~~~~P~k~fsi~rv~R~e~~d~th~~~f~Q~eg 396 (505)
T PTZ00326 317 HSGGGYGSIGWQYNWKLEEARKNVLRTHTTAVSARMLYKLAQQYQKGKGFKPKKYFSIDRVFRNETLDATHLAEFHQVEG 396 (505)
T ss_pred HCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEECCCEEECCCCCCCCCCEEEEEEE
T ss_conf 50688788876778797787520636577537699999875404655688981475237264157777653404554357
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCEEEEEE--CC--E-EEEE
Q ss_conf 10354310124620234544333314688875311111110145333033058865678981699998--79--2-9999
Q gi|254780316|r 591 IRKGSSGIEGSGRLWSDKSEERCRFVDLFDAKADALSVIEPFVSLDSLRFESGAPSWYHPGRSGIIKT--SA--E-IVLG 665 (805)
Q Consensus 591 ~~~~~~~~~~~g~~~~~~~~~~~~~~df~dlKg~v~~ll~~l~~~~~~~~~~~~~~~~hPgrsa~I~~--~g--k-~iiG 665 (805)
+. -.+.++|-++||.+..++..++. ..++|.++=.||-.| |+++.. .+ + .-+|
T Consensus 397 ~~-------------------~~~~~~~~~l~~~l~~f~~~~g~-~~~rfrp~yfpfteP--s~e~~~~~~~~~~w~Ei~ 454 (505)
T PTZ00326 397 VV-------------------IDRNLSLGDLMGTLREFFRRIGI-SKLRFKPAFNPYTEP--SMEIFGYHPQLKKWVEVG 454 (505)
T ss_pred EE-------------------ECCCCCHHHHHHHHHHHHHHHCC-CCEEECCCCCCCCCC--CEEEEEEECCCCCEEEEE
T ss_conf 89-------------------64888899999999999998498-757868888898998--278999707888479982
Q ss_pred EEEEECHHHHHHCCCCC--CEEEEEEEHHHHHHH
Q ss_conf 98547789999668799--789999878762354
Q gi|254780316|r 666 YFGEFHPNILDFFGLSN--PICGFEVYLDSIPIS 697 (805)
Q Consensus 666 ~iG~ihP~i~~~~~i~~--~v~~~EI~ld~L~~~ 697 (805)
-+|.+||++++..|++. ++++|-+-++.+...
T Consensus 455 g~Gm~~p~vl~~~g~~~~~~~~a~G~g~eR~am~ 488 (505)
T PTZ00326 455 NSGLFRPEMLRPMGFPEDVTVIAWGLSLERPTMI 488 (505)
T ss_pred CCCCCCHHHHHHCCCCCCCEEEEEEECHHHHHHH
T ss_conf 6657587887325959998489986238899999
No 31
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=98.93 E-value=5e-09 Score=83.28 Aligned_cols=209 Identities=15% Similarity=0.254 Sum_probs=135.4
Q ss_pred CCCCCCCCCCCCCHHHCHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCEEHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 46776432101512211067764321015861134543024444777544310002210354310124620234544333
Q gi|254780316|r 534 LNPISADMSNMRTSLLPGLLKATGRNVDRAIADFAIFEVSHVYENDTPEGQKYMAAGIRKGSSGIEGSGRLWSDKSEERC 613 (805)
Q Consensus 534 ~NPlS~e~s~lR~SLlp~LL~~~~~N~~r~~~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 613 (805)
+-|.| ...+||+.+..|-.-+++.=.++....+++|-|.+||+++......++...... ...-..
T Consensus 175 L~p~s-~~~tLRSHmTsgwfitL~~l~~k~~~P~klFSIDRcFRrEq~eD~~hL~~yhsa--------------scvv~~ 239 (527)
T PRK06253 175 LKPES-SRLTLRSHMTSGWFITLSALWERKPLPFKLFSIDRCFRREQKEDASRLMTYHSA--------------SCVVAG 239 (527)
T ss_pred CCCCC-CCCEEHHCCCCHHHHHHHHHHHCCCCCEEEEEEEHEEECHHHCCHHHHHHHHEE--------------EEEEEC
T ss_conf 25544-453410010302788799997267998368741010220000245563454432--------------269975
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCEEEECC--CCCCCCCCCEEEEEE-----CCEEEEEEEEEECHHHHHHCCCCCCEEE
Q ss_conf 314688875311111110145333033058--865678981699998-----7929999985477899996687997899
Q gi|254780316|r 614 RFVDLFDAKADALSVIEPFVSLDSLRFESG--APSWYHPGRSGIIKT-----SAEIVLGYFGEFHPNILDFFGLSNPICG 686 (805)
Q Consensus 614 ~~~df~dlKg~v~~ll~~l~~~~~~~~~~~--~~~~~hPgrsa~I~~-----~gk~iiG~iG~ihP~i~~~~~i~~~v~~ 686 (805)
..+++-++|++++.++..+|.. +++|.++ ...||.|+-+.+++. +|=.-+|.+|.-.|.++..|||+.||..
T Consensus 240 edVn~d~gkav~~~lL~~fGF~-~frFrPdek~skYY~P~TqtEVy~yhp~~~gWvEvatfGIysP~aL~~ygI~~PVmn 318 (527)
T PRK06253 240 EDVTVDDGKAVAEGLLSQFGFT-NFRFRPDEKRSKYYTPDTQTEVYAYHPKLDGWVEVATFGIYSPTALAEYGIDVPVMN 318 (527)
T ss_pred CCCCHHHHHHHHHHHHHHHCCC-EEEECCCCCCCCCCCCCCCEEEEEECCCCCCEEEEECCCCCCHHHHHHCCCCCCEEE
T ss_conf 9866777799999999970975-378434423566537886327999636678628973142567544543199974220
Q ss_pred EEEEHHHHHHHHHCCCCCC--CCCCCCCCCCCEEEEEEEEC-----CCCCHHHHHHHH-HHC--CCCEEEEEEEEEEECC
Q ss_conf 9987876235452024566--31368988872001899966-----887999999999-711--1003576989876367
Q gi|254780316|r 687 FEVYLDSIPISQKKRTKTK--KVVHLSSLHPVKRDLAFIVD-----QHIPAGTLVNII-KNV--DRLIDDVTVFDVFQGK 756 (805)
Q Consensus 687 ~EI~ld~L~~~~~~~~~~~--~~~~~s~fP~v~RDls~iv~-----~~v~~~~I~~~i-~~~--~~ll~~v~lfDvY~g~ 756 (805)
+-+-++.|........... .|..+...-.+.||||=.+. ....-.++...| +.+ ..--.+=.=|..|+|+
T Consensus 319 lGlGvERLAMI~~~~~DiR~l~ypQf~~~~lsD~eiA~~i~~~~~P~t~eg~~~a~~ii~~~~~~~~e~sPC~f~~~~g~ 398 (527)
T PRK06253 319 LGLGVERLAMILHNAEDVREMVYPQFYEWELSDREIARMIKVDKVPVTDEGKDLAREIVETCVKHADEPSPCEFEAWEGE 398 (527)
T ss_pred CCCCHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECC
T ss_conf 01118999999818277887633456775668699986514046767578999999999999981899999468874031
Q ss_pred CC
Q ss_conf 79
Q gi|254780316|r 757 SL 758 (805)
Q Consensus 757 ~i 758 (805)
-.
T Consensus 399 ~~ 400 (527)
T PRK06253 399 IF 400 (527)
T ss_pred CC
T ss_conf 04
No 32
>KOG2241 consensus
Probab=98.79 E-value=7.7e-09 Score=81.95 Aligned_cols=91 Identities=27% Similarity=0.432 Sum_probs=70.0
Q ss_pred CCCEEEEEEEEEEECCCCC-CCEEEEECCCCCEEEEECCCCCCC-----CCCEEEEECCCCEECCCCEEEEEEHHCCCCC
Q ss_conf 6874899999975657998-708999759995798975483455-----8978989668779258983983312058650
Q gi|254780316|r 41 LSPFTIVKVLSVERNPDLD-CAILRIDTGKHQEIQVVCGAPNVR-----VGLLGVWAPPGSCIPENNMIVNVRKIRGIES 114 (805)
Q Consensus 41 ~~~vvvg~v~~~~~hP~ad-l~v~~Vd~g~~~~~~IvcgA~Nv~-----~g~~V~~A~~Ga~lp~g~~~i~~~~irGv~S 114 (805)
.-.+.||+|+++.+||+|| |++-+||+|+.+++|||.|=-... .|-+|+| | . .+|++|+||+.|
T Consensus 96 ~LDiRvG~Ivka~kHpdADsLYve~IdvgE~~PRTVvSGLvk~vpleemq~R~Vvv------l--c--NLKPakmRgv~S 165 (255)
T KOG2241 96 LLDIRVGKIVKAGKHPDADSLYVEEIDVGEAEPRTVVSGLVKHVPLEEMQNRLVVV------L--C--NLKPAKMRGVKS 165 (255)
T ss_pred EEEEEEEEEEEECCCCCCCEEEEEEEEECCCCCCEEEHHHHHHCCHHHHHCCEEEE------E--E--CCCCCCCCCCCC
T ss_conf 14678768988303688662578886306556631003467548898972884999------9--3--355432466223
Q ss_pred CCHH-HHHHHCCCCCCCC--CEEEECCCCCCCCCH
Q ss_conf 5454-1188769985477--507816888888455
Q gi|254780316|r 115 TGMM-CSEKELMLSDDSA--SIMELPIDAPVGGRL 146 (805)
Q Consensus 115 ~GMl-CS~~ELgl~~~~~--gI~~l~~~~~~G~~~ 146 (805)
+||+ |.. +.|+. -++..|.++.+|..+
T Consensus 166 ~gMvlcaS-----s~d~~~VE~l~pP~gs~pGdRv 195 (255)
T KOG2241 166 QGMVLCAS-----SPDKSVVEPLAPPAGSKPGDRV 195 (255)
T ss_pred CEEEEECC-----CCCCCEEEECCCCCCCCCCCEE
T ss_conf 14688637-----8665504651599989998746
No 33
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=3.7e-07 Score=69.98 Aligned_cols=192 Identities=16% Similarity=0.195 Sum_probs=129.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH--HHH-HHH-------HHCCCCCCCCCCCCCCCCHHHCHHHH
Q ss_conf 67899889546789887877877402321004825765--520-000-------00002467764321015122110677
Q gi|254780316|r 485 KRNLSLQQSRTRYVKRVLASRAMMEVVNWSFISKEQSV--LFG-GGQ-------RELEILNPISADMSNMRTSLLPGLLK 554 (805)
Q Consensus 485 ~~~~~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~--~~~-~~~-------~~i~l~NPlS~e~s~lR~SLlp~LL~ 554 (805)
.+...+.....+++++.+.++||+|+-.. .+..+..+ .++ +.+ +..-+ |+ +.+..+|||.--|--.+
T Consensus 107 ~G~~Hpl~~~~e~i~~iF~~mGF~~~~gp-~IE~d~~NFDaLn~P~dHPARdmqDTFy~-~~-~~~~~lLRTHTs~vq~R 183 (335)
T COG0016 107 PGSLHPLTQTIEEIEDIFLGMGFTEVEGP-EIETDFYNFDALNIPQDHPARDMQDTFYL-KD-DREKLLLRTHTSPVQAR 183 (335)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCEECCCC-CCCCCCCCHHHHCCCCCCCCCCCCCEEEE-CC-CCCCEEECCCCCHHHHH
T ss_conf 89867089999999999997496664588-21320225243249999984124443787-68-87730023668276599
Q ss_pred HHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 64321015861134543024444777544310002210354310124620234544333314688875311111110145
Q gi|254780316|r 555 ATGRNVDRAIADFAIFEVSHVYENDTPEGQKYMAAGIRKGSSGIEGSGRLWSDKSEERCRFVDLFDAKADALSVIEPFVS 634 (805)
Q Consensus 555 ~~~~N~~r~~~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~df~dlKg~v~~ll~~l~~ 634 (805)
.+..|.. +.+++|=+|+||+++..... +..-.-+. .|.. -.+.++|-++||.++.++..++.
T Consensus 184 ~l~~~~~---~P~k~~~~grvyR~D~~DaT-Hs~~FhQi-------EGlv-------vd~~~s~~~Lkg~L~~f~~~~fg 245 (335)
T COG0016 184 TLAENAK---IPIKIFSPGRVYRNDTVDAT-HSPEFHQI-------EGLV-------VDKNISFADLKGTLEEFAKKFFG 245 (335)
T ss_pred HHHHCCC---CCCEEECCCCEECCCCCCCC-CCHHEEEE-------EEEE-------EECCCCHHHHHHHHHHHHHHHCC
T ss_conf 9984799---99158456634117887764-26101336-------7899-------95895699999999999999637
Q ss_pred CC-CEEEECCCCCCCCCCCEEEEEECCE---EEEEEEEEECHHHHHHCCC-CCCEE--EEEEEHHHHHHH
Q ss_conf 33-3033058865678981699998792---9999985477899996687-99789--999878762354
Q gi|254780316|r 635 LD-SLRFESGAPSWYHPGRSGIIKTSAE---IVLGYFGEFHPNILDFFGL-SNPIC--GFEVYLDSIPIS 697 (805)
Q Consensus 635 ~~-~~~~~~~~~~~~hPgrsa~I~~~gk---~iiG~iG~ihP~i~~~~~i-~~~v~--~~EI~ld~L~~~ 697 (805)
.. .++|.++=.||--|.--.+++..+. .-+|=+|.+||+|++..|+ +.++. +|-+-+|.|...
T Consensus 246 ~~~~vRfrpsyFPFTEPS~Evdv~~~~~~~WlEi~G~Gmv~P~VL~~~G~~~~~~~GfAfGlGlERlAML 315 (335)
T COG0016 246 EDVKVRFRPSYFPFTEPSAEVDVYCPGCGGWLEILGCGMVHPNVLEAVGIDPEEYSGFAFGLGLERLAML 315 (335)
T ss_pred CCCCEEEECCCCCCCCCEEEEEEEECCCCCEEEEECCCCCCHHHHHHCCCCCCCCEEEEEEECHHHHHHH
T ss_conf 7763576068789899717899997687868998356545788897459998760588874048899999
No 34
>TIGR00399 metG_C_term methionyl-tRNA synthetase, beta subunit; InterPro: IPR004495 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . The methionyl-tRNA synthetase (metG) (6.1.1.10 from EC) is a class I amino acyl-tRNA ligase. This family describes a region of the methionyl-tRNA synthetase that is present at the C-terminus of MetG in some species (Escherichia coli, Bacillus subtilis, Thermotoga maritima, Methanobacterium thermoautotrophicum), and as a separate beta chain in Aquifex aeolicus. It is absent in a number of other species (e.g. Mycoplasma genitalium, Mycobacterium tuberculosis), while Pyrococcus horikoshii has both a full length MetG and a second protein homologous to the beta chain only.; GO: 0000166 nucleotide binding, 0004825 methionine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006431 methionyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=98.70 E-value=1.4e-08 Score=80.17 Aligned_cols=95 Identities=22% Similarity=0.298 Sum_probs=70.1
Q ss_pred CEEEEEEEEEEECCCCC-CCEEEEECCCCCEEEEECCCCCCCCCCEE-EEECCCCEEC--CCCEEEEEEHH-CCCCCCCH
Q ss_conf 74899999975657998-70899975999579897548345589789-8966877925--89839833120-58650545
Q gi|254780316|r 43 PFTIVKVLSVERNPDLD-CAILRIDTGKHQEIQVVCGAPNVRVGLLG-VWAPPGSCIP--ENNMIVNVRKI-RGIESTGM 117 (805)
Q Consensus 43 ~vvvg~v~~~~~hP~ad-l~v~~Vd~g~~~~~~IvcgA~Nv~~g~~V-~~A~~Ga~lp--~g~~~i~~~~i-rGv~S~GM 117 (805)
.+.||+|.++|+.|.|| |...+||.|+++.+|||.|=. +.|- |=.++|=.+= .| +|++|| +||.|+||
T Consensus 47 dlRVg~i~~AE~v~kS~KLLkL~lDlG~~~~RQivSGI~----~~Y~~PEeLvGk~vivv~N---LKPaKl~~Gv~SeGM 119 (149)
T TIGR00399 47 DLRVGKILEAERVEKSDKLLKLKLDLGDEKDRQIVSGIA----EDYTDPEELVGKKVIVVAN---LKPAKLKFGVKSEGM 119 (149)
T ss_pred EEEEEEEEEECCCCCCCCEEEEEEECCCCEECCEEEECH----HCCCCCHHHCCCEEEEEEC---CCCHHHCCCCCCCCC
T ss_conf 245577553205846566256887538970002352002----4178704743977999704---876012377343351
Q ss_pred HHHHHHCCCCCCCCCEEEECC--CCCCCCCH
Q ss_conf 411887699854775078168--88888455
Q gi|254780316|r 118 MCSEKELMLSDDSASIMELPI--DAPVGGRL 146 (805)
Q Consensus 118 lCS~~ELgl~~~~~gI~~l~~--~~~~G~~~ 146 (805)
|-++.+=|=.- .-|.+|+. +++.|+-+
T Consensus 120 iLAae~~g~nf--k~l~lls~~~~~~aG~ri 148 (149)
T TIGR00399 120 ILAAEDDGKNF--KNLFLLSPDKEVEAGERI 148 (149)
T ss_pred EEEEECCCCCE--EEEEEECCCCCCCCCCCC
T ss_conf 78852699724--578886667888998435
No 35
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=98.63 E-value=5.8e-07 Score=68.61 Aligned_cols=181 Identities=14% Similarity=0.172 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCHHHH-HHHH-HHH-------HHCCCCCCCCCCCCCCCCHHHCHHHHHHHHHCCC
Q ss_conf 954678988787787740232100482576-5520-000-------0000246776432101512211067764321015
Q gi|254780316|r 492 QSRTRYVKRVLASRAMMEVVNWSFISKEQS-VLFG-GGQ-------RELEILNPISADMSNMRTSLLPGLLKATGRNVDR 562 (805)
Q Consensus 492 ~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~-~~~~-~~~-------~~i~l~NPlS~e~s~lR~SLlp~LL~~~~~N~~r 562 (805)
....+++++.+.++||.|+-.--..+..++ +.++ +.+ +..=+.++ +..+|||..-+.-.+.+..+
T Consensus 4 ~~~~~~i~~~f~~~GF~~~~gp~ie~~~~NFD~Ln~P~dHPaR~~~DTfy~~~~---~~~lLRtHTS~~q~r~l~~~--- 77 (218)
T cd00496 4 NKVIEEIEDIFVSMGFTEVEGPEVETDFYNFDALNIPQDHPARDMQDTFYINDP---ARLLLRTHTSAVQARALAKL--- 77 (218)
T ss_pred HHHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEECCC---CCCEECCCCCHHHHHHHHHC---
T ss_conf 899999999998779868228951231030453385988755372432786377---66021578756679999745---
Q ss_pred CCCHHHHHHHCCCCCCCCCCCCC----EEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC-CCC
Q ss_conf 86113454302444477754431----0002210354310124620234544333314688875311111110145-333
Q gi|254780316|r 563 AIADFAIFEVSHVYENDTPEGQK----YMAAGIRKGSSGIEGSGRLWSDKSEERCRFVDLFDAKADALSVIEPFVS-LDS 637 (805)
Q Consensus 563 ~~~~i~lFEiG~Vf~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~df~dlKg~v~~ll~~l~~-~~~ 637 (805)
.+.+++|.+|+||+++.....- +.+.|+. -...+.+-++|+.++.++..++. ...
T Consensus 78 -~~p~~~~~~G~VyR~D~iDatH~~~FhQ~Eg~~-------------------v~~~~~~~~Lk~~l~~~~~~lfg~~~~ 137 (218)
T cd00496 78 -KPPIRIFSIGRVYRNDEIDATHLPEFHQIEGLV-------------------VDKGLTFADLKGTLEEFAKELFGPITK 137 (218)
T ss_pred -CCCCEEEECCCEEECCCCCCCCCCEEEEEEEEE-------------------EECCCCHHHHHHHHHHHHHHHCCCCCE
T ss_conf -898179942504653889843153125763799-------------------956511999999999999997387664
Q ss_pred EEEECCCCCCCCCCCEEEEEECC--E-EEEEEEEEECHHHHHHCCCCC--CEEEEEEEHHHHHHHH
Q ss_conf 03305886567898169999879--2-999998547789999668799--7899998787623545
Q gi|254780316|r 638 LRFESGAPSWYHPGRSGIIKTSA--E-IVLGYFGEFHPNILDFFGLSN--PICGFEVYLDSIPISQ 698 (805)
Q Consensus 638 ~~~~~~~~~~~hPgrsa~I~~~g--k-~iiG~iG~ihP~i~~~~~i~~--~v~~~EI~ld~L~~~~ 698 (805)
+++.++-.|+-+|+.-.++...+ + .-+|-+|.+||+++++.|++. ..++|-+-+|.|....
T Consensus 138 ~r~rp~yFPFTePS~Evdv~~~~~~~WlEv~G~G~v~p~vL~~~G~d~~~~g~AfG~GlERlaMl~ 203 (218)
T cd00496 138 VRFRPSYFPFTEPSFEVDVYCPGCLGWLEILGCGMVRPEVLENAGIDEEYSGFAFGIGLERLAMLK 203 (218)
T ss_pred EEECCCCCCCCCCCEEEEEEECCCCCCEEEECCCCCCHHHHHHCCCCCCCEEEEEEECHHHHHHHH
T ss_conf 536778899999826999996587871488504654889998669799988999852588999998
No 36
>PRK08655 prephenate dehydrogenase; Provisional
Probab=98.51 E-value=4e-06 Score=62.65 Aligned_cols=131 Identities=18% Similarity=0.356 Sum_probs=88.8
Q ss_pred CCEEEEEEEEEECHHHHHHCCCCCCEEEEEEEHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHH
Q ss_conf 79299999854778999966879978999987876235452024566313689888720018999668879999999997
Q gi|254780316|r 659 SAEIVLGYFGEFHPNILDFFGLSNPICGFEVYLDSIPISQKKRTKTKKVVHLSSLHPVKRDLAFIVDQHIPAGTLVNIIK 738 (805)
Q Consensus 659 ~gk~iiG~iG~ihP~i~~~~~i~~~v~~~EI~ld~L~~~~~~~~~~~~~~~~s~fP~v~RDls~iv~~~v~~~~I~~~i~ 738 (805)
.|+.-+|.+.++.|...- ++-++....+-+ +++.......-...+- -.+|...||+|+++|.++.-+-|..++.
T Consensus 310 s~~vh~G~lk~v~~~~~~-l~~~~~~~~l~~--~ni~~~~~~el~~wk~---~nl~~~~~disv~~~~~~d~~ii~~~~~ 383 (441)
T PRK08655 310 SGKVHVGILKKVYPDEII-LKKGNKEIKLKI--SNIRLLSEKELREWKV---ENLEKYVRDISVLFPKGADPEVILELLD 383 (441)
T ss_pred CCCEEEEEEEEECCCEEE-EECCCCEEEEEE--ECCCCCCHHHHHHHHH---CCCCCCEEEEEEEECCCCCHHHHHHHHH
T ss_conf 880798788774386589-813993799986--3010389889999886---4576313568999269999799999985
Q ss_pred HCCCCEEEEEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCEEC
Q ss_conf 11100357698987636779988426999999847798889999999999999999999511981
Q gi|254780316|r 739 NVDRLIDDVTVFDVFQGKSLGEGKKSVAIQVLIQPLKDTFRDDDIRILMDRIVENVVKKTNAVLR 803 (805)
Q Consensus 739 ~~~~ll~~v~lfDvY~g~~i~~gkkSla~rl~fqs~~kTLtd~EI~~i~~~ii~~l~~k~ga~LR 803 (805)
... -+-++++.|+|+|++++++.+|+|||++. +.+++.+.+.......+. .+|..+|
T Consensus 384 ~~~-~~~~~~i~d~y~g~~i~~~~~s~tfri~~------~~~~~~~~~~~~~~~~l~-~~g~~~r 440 (441)
T PRK08655 384 NLK-HKFDIEIIDVYSGPQIDEGRLSVTFRITS------FGKEDLENLEEEFTKLLE-GIGGKIR 440 (441)
T ss_pred CCC-CEEEEEEEEECCCCCCCCCCEEEEEEEEE------ECHHHHHHHHHHHHHHHH-CCCCEEC
T ss_conf 235-13457888803687467773279999998------457778889999999985-4687625
No 37
>pfam09513 consensus
Probab=98.51 E-value=5.3e-07 Score=68.89 Aligned_cols=97 Identities=29% Similarity=0.416 Sum_probs=76.2
Q ss_pred EEEEEEEEEEECCCCC-CCEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCEECC---------------------CC
Q ss_conf 4899999975657998-7089997599957989754834558978989668779258---------------------98
Q gi|254780316|r 44 FTIVKVLSVERNPDLD-CAILRIDTGKHQEIQVVCGAPNVRVGLLGVWAPPGSCIPE---------------------NN 101 (805)
Q Consensus 44 vvvg~v~~~~~hP~ad-l~v~~Vd~g~~~~~~IvcgA~Nv~~g~~V~~A~~Ga~lp~---------------------g~ 101 (805)
+-|.+|.+++|||||| +-+++||- -++|----..++|+.|+++.+-+.||. .+
T Consensus 4 a~v~~I~~i~pi~~AD~ie~a~V~G-----W~vVV~Kge~k~GD~~Vy~EiDS~lP~~~~~~~~~~~~~~~~~~~~g~~g 78 (356)
T pfam09513 4 ATVRRILKLEPHPGADAIELATIDG-----WRVVVKKGEYRVGDPAVYIEEDSLLPVDDLKAHTLLNADGGAGRLYGKDG 78 (356)
T ss_pred EEEEEEEECCCCCCCCEEEEEEECC-----EEEEEECCCCCCCCEEEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCC
T ss_conf 5899975312048986488999888-----68999878613699799982421488653345555403566542267767
Q ss_pred EEEEEEHHCCCCCCCHHHHHHHCCCCCCCCCEEEECCCCCCCCCHHHHHC
Q ss_conf 39833120586505454118876998547750781688888845588708
Q gi|254780316|r 102 MIVNVRKIRGIESTGMMCSEKELMLSDDSASIMELPIDAPVGGRLSDYLE 151 (805)
Q Consensus 102 ~~i~~~~irGv~S~GMlCS~~ELgl~~~~~gI~~l~~~~~~G~~~~~~l~ 151 (805)
+-|+..||||..|+||+|-.+++-...+ +..+.++|+|+.+.|+
T Consensus 79 ~RikT~kLRG~~SQGl~lpl~~~~~~~~------~~~~~~~g~d~te~LG 122 (356)
T pfam09513 79 FRVKTIKLRGEVSQGLVLPLKALAYEGE------LISDQEVGDDFAELLG 122 (356)
T ss_pred CEEEEEEECCEEEEEEEEEHHHCCCCCC------CCCCCCCCCCHHHHCC
T ss_conf 3687999652885249971678464322------3552004855577528
No 38
>PHA02142 putative RNA ligase
Probab=98.47 E-value=8.7e-07 Score=67.36 Aligned_cols=96 Identities=22% Similarity=0.265 Sum_probs=74.8
Q ss_pred EEEEEEEEEEECCCCC-CCEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCEECC------------------CCEEE
Q ss_conf 4899999975657998-7089997599957989754834558978989668779258------------------98398
Q gi|254780316|r 44 FTIVKVLSVERNPDLD-CAILRIDTGKHQEIQVVCGAPNVRVGLLGVWAPPGSCIPE------------------NNMIV 104 (805)
Q Consensus 44 vvvg~v~~~~~hP~ad-l~v~~Vd~g~~~~~~IvcgA~Nv~~g~~V~~A~~Ga~lp~------------------g~~~i 104 (805)
+-|-+|.+++|||+|| +-+|+|| | -++|----.++.|+.|++..+-+.||. .++-|
T Consensus 10 atir~i~~i~pi~~aD~ie~a~Vd-g----W~vVV~kgefk~GD~~Vy~EiDS~lP~~~~~fefl~~~~~~~~G~~~~Ri 84 (366)
T PHA02142 10 ASMRKIADLQPIPGADAIEVATID-G----WEVVVKKGEFRVGDDCVYFEIDSLLPTDNPAFRFLETRARIYDGKMRARI 84 (366)
T ss_pred EEEEEEEEEEECCCCCEEEEEEEC-C----EEEEEECCCCCCCCEEEEEECCCCCCCCCHHHHHHCCCCCCCCCCCCCEE
T ss_conf 999997520004899758899988-8----79999878623599799984211477886133343047642478656467
Q ss_pred EEEHHCCCCCCCHHHHHHHCCCCCCCCCEEEECCCCCCCCCHHHHHC
Q ss_conf 33120586505454118876998547750781688888845588708
Q gi|254780316|r 105 NVRKIRGIESTGMMCSEKELMLSDDSASIMELPIDAPVGGRLSDYLE 151 (805)
Q Consensus 105 ~~~~irGv~S~GMlCS~~ELgl~~~~~gI~~l~~~~~~G~~~~~~l~ 151 (805)
+..+|||..|+||+|..+++-..+. ..+.++|+++.+.||
T Consensus 85 kT~kLRG~~SQGl~~pl~~~~~~~~-------~~~~~~g~d~te~LG 124 (366)
T PHA02142 85 KTIKLRGQISQGIALPTGAFTVGEL-------LGGQEMDKTLDQMLG 124 (366)
T ss_pred EEEEEEEEEEEEEEEEHHHCCCCCC-------CCCCCCCCCHHHHHC
T ss_conf 8999825972238870456576322-------454113867778608
No 39
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=98.35 E-value=1.4e-05 Score=58.76 Aligned_cols=186 Identities=15% Similarity=0.191 Sum_probs=120.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH--HHH-HHHHH-------CCCCCCCCCCCCCCCCHHHCHHHHH
Q ss_conf 7899889546789887877877402321004825765--520-00000-------0024677643210151221106776
Q gi|254780316|r 486 RNLSLQQSRTRYVKRVLASRAMMEVVNWSFISKEQSV--LFG-GGQRE-------LEILNPISADMSNMRTSLLPGLLKA 555 (805)
Q Consensus 486 ~~~~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~--~~~-~~~~~-------i~l~NPlS~e~s~lR~SLlp~LL~~ 555 (805)
+...+.....+.+++++.++||.+ ..-+-+..++.+ .++ +.+.+ .-+ ++..+|||.--|.-+++
T Consensus 104 G~~HPit~~~~ei~~iF~~~Gf~v-~~GpeiE~~~~NFdaLn~P~~HPAR~~~DTFy~-----~~~~lLRTHTS~~qir~ 177 (338)
T PRK00488 104 GGLHPLTRTIERIEDIFVGLGFEV-AEGPEIEDDYYNFEALNIPKDHPARDMQDTFYI-----DDRLLLRTHTSPVQIRT 177 (338)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCEE-ECCCCEEEHHHHHHHHCCCCCCCCCCCCCEEEE-----CCCCEECCCCCHHHHHH
T ss_conf 664769999999999999869769-618831004546887569978854364662897-----68713435687888999
Q ss_pred HHHHCCCCCCHHHHHHHCCCCCCCCCCC-CCEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 4321015861134543024444777544-310002210354310124620234544333314688875311111110145
Q gi|254780316|r 556 TGRNVDRAIADFAIFEVSHVYENDTPEG-QKYMAAGIRKGSSGIEGSGRLWSDKSEERCRFVDLFDAKADALSVIEPFVS 634 (805)
Q Consensus 556 ~~~N~~r~~~~i~lFEiG~Vf~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~df~dlKg~v~~ll~~l~~ 634 (805)
+.. +.+.+++|=.|+||+++.... .......++ |.. -.+.++|.++||.++.++..++.
T Consensus 178 m~~----~~pp~~~i~~GrvyR~d~~DatH~~~FhQ~E---------gl~-------vd~~it~~~Lk~~l~~f~~~~fg 237 (338)
T PRK00488 178 MEK----QKPPIRIIAPGRVYRNDSDDATHSPMFHQVE---------GLV-------VDKNISFADLKGTLEDFLKAFFG 237 (338)
T ss_pred HHH----CCCCEEEEECCCCCCCCCCCCCCCEEEEEEE---------EEE-------EECCCCHHHHHHHHHHHHHHHCC
T ss_conf 972----6998699952663158999875350466400---------589-------71788799999999999999728
Q ss_pred -CCCEEEECCCCCCCCCCCEEEEEE------------CCE-EEEEEEEEECHHHHHHCCCCCC---EEEEEEEHHHHHHH
Q ss_conf -333033058865678981699998------------792-9999985477899996687997---89999878762354
Q gi|254780316|r 635 -LDSLRFESGAPSWYHPGRSGIIKT------------SAE-IVLGYFGEFHPNILDFFGLSNP---ICGFEVYLDSIPIS 697 (805)
Q Consensus 635 -~~~~~~~~~~~~~~hPgrsa~I~~------------~gk-~iiG~iG~ihP~i~~~~~i~~~---v~~~EI~ld~L~~~ 697 (805)
.-.++|.++=.|+-.|+--.+|.. +++ .-+|=+|.+||+|++..++..+ -|+|-+-+|.+...
T Consensus 238 ~~~~~R~rpsyFPFtEPs~Evdi~~~~~~g~gc~~~~~~~WlEi~G~Gmv~p~Vl~~~gid~~~~~G~AfG~GieR~aMl 317 (338)
T PRK00488 238 EDLKIRFRPSYFPFTEPSAEVDVSCFNCKGKGCRVCKNTGWLEVLGCGMVHPNVLRNVGIDPEEYSGFAFGMGIERLAML 317 (338)
T ss_pred CCCEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHCCCCCCCCEEEEEEECHHHHHHH
T ss_conf 76647754788999998534788731457766544789963897376667889998669995527599875158899999
No 40
>TIGR02306 RNA_lig_DRB0094 RNA ligase, DRB0094 family; InterPro: IPR012646 RNA repair, though not as well characterised as DNA repair, is an important component of many biological systems. These include the kinteoplastid RNA-editing process and the defence of bacteriophage T4 against tRNA damage caused by host nucleases. RNA ligase is an essential enzyme in the process of RNA repair . It is part of the broader nucleotidyl transferase superfamily which includes DNA ligase and RNA capping enzymes, and has the same basic mechanism as other memebers of this family. The RNA ligase family is divided into two distinct branches: the Rnl-1 like proteins, found only in viruses and fungi so far, and the Rnl2-like proteins which have been found in all three kingdoms of life. This entry represents a small group of known and predicted RNA ligases found in some bacterial and phage species. The best characterised memeber is found in Deinococcus radiodurans, a bacterium capable of withstanding a variety of adverse environmental conditions including extreme amounts of radiation. Ligase activity is apparently specific to nicks within either duplex RNA or an RNA:DNA hybrid and is dependenton divalent cations such as manganese . These proteins have a distinctive domain structure, lacking the C-terminal domain observed in other Rnl2-like ligases, and possesing a distinctive N-terminal domain not found in other ligases but which is important for catalytic activity..
Probab=97.87 E-value=4.6e-06 Score=62.25 Aligned_cols=217 Identities=17% Similarity=0.235 Sum_probs=130.9
Q ss_pred EEEEEEEEEECCCCC-CCEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCEECC--CC-----------------EEE
Q ss_conf 899999975657998-7089997599957989754834558978989668779258--98-----------------398
Q gi|254780316|r 45 TIVKVLSVERNPDLD-CAILRIDTGKHQEIQVVCGAPNVRVGLLGVWAPPGSCIPE--NN-----------------MIV 104 (805)
Q Consensus 45 vvg~v~~~~~hP~ad-l~v~~Vd~g~~~~~~IvcgA~Nv~~g~~V~~A~~Ga~lp~--g~-----------------~~i 104 (805)
|+.+|.+..|||||| |=+|+|+. .++|----..|.|.-.+++..-|+||. .+ --|
T Consensus 4 v~~~~a~l~P~PnAdalEla~vg~-----~~~VV~KGeyR~G~~~Vy~p~~svLPP~~agl~~~l~t~a~~l~G~~~~Rv 78 (374)
T TIGR02306 4 VIREIADLFPHPNADALELAKVGG-----YEVVVKKGEYRVGEDIVYIPEDSVLPPTDAGLFRELETRAKILDGKEKDRV 78 (374)
T ss_pred HHHHHHHHCCCCCCCEEEEEECCC-----EEEEEEECCCCCCCCEEEEEHHHCCCCCCCHHHHHHCCCCEEECCCCCCCE
T ss_conf 566798718898856033243273-----899993067557885588433315986434046631355001147443642
Q ss_pred EEEHHCCCCCCCHHHHHHHCCCCCCCCCEEEECCCCCCCCCHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 33120586505454118876998547750781688888845588708885599987087857665557899987764115
Q gi|254780316|r 105 NVRKIRGIESTGMMCSEKELMLSDDSASIMELPIDAPVGGRLSDYLELSDPIIDVSLTPNRSDCIGVRGIALDLVAAGLG 184 (805)
Q Consensus 105 ~~~~irGv~S~GMlCS~~ELgl~~~~~gI~~l~~~~~~G~~~~~~l~l~D~i~ei~iTpNR~D~ls~~GiARElaa~~~~ 184 (805)
|.-+|||..|+|.+|-..-|--.+-.. ...-|+++.+.|+ ||
T Consensus 79 k~vrLRGe~SQGi~lp~~al~d~~l~~-------~~~~~~d~ae~Lg---------I~---------------------- 120 (374)
T TIGR02306 79 KTVRLRGEISQGIVLPTDALEDAELLG-------GVEDDKDLAELLG---------IT---------------------- 120 (374)
T ss_pred EEEEECCEEECCEEECCCCCEECCCCC-------CCCCCCCHHHHCC---------CE----------------------
T ss_conf 468862434212476677630120236-------5234231886559---------35----------------------
Q ss_pred CCCCCCCCCCC--CCCCCCCEEEEEEECCCHHHHHHHCCCC---CCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 66665545667--7777774158984073111233201123---224556637787888864013210399999899986
Q gi|254780316|r 185 KLKEINISCPL--SSESIPLEIKFDLDDSSLCKGFAMCCVK---GVRNNVAPNWMRQRLKAVGLRSISALVDITNYVSLD 259 (805)
Q Consensus 185 ~l~~~~~~~~~--~~~~~~~~i~v~i~~~~~c~~y~~~~i~---~v~~~~SP~wl~~rL~~~Gir~inniVDitNyvmle 259 (805)
.-.|+.+..- ..+..|-..-+...|.+.|.+|.-+.-. ++++
T Consensus 121 -kwePP~p~tm~ge~e~~PPa~~~~~~D~E~~q~y~~~f~~kyag~~v-------------------------------- 167 (374)
T TIGR02306 121 -KWEPPVPGTMAGEVETVPPADFLKKTDVERIQRYVDRFKEKYAGEKV-------------------------------- 167 (374)
T ss_pred -EECCCCCCCCCCCCCCCCCHHHCCCCCHHHHCCCHHHCCHHHCCCCE--------------------------------
T ss_conf -87277468888888888806753556734514201100300078627--------------------------------
Q ss_pred HCCCEEEECCCCCCCE-EEEEECCCCCCHHHHHHHCCCCCCCCEEEECCCCCCCCHHHCCCCCCCCCCCCCEEEEEEECC
Q ss_conf 0870000010223332-688623554311455420112454320000256763100111355312013672699997157
Q gi|254780316|r 260 RGYPSHVFDASRISDV-LTVRRACSGEKILALDNQEYDLSPDNVVIASDGRIQSIAGIIGGKHAGCDDNTTDVLVEVALW 338 (805)
Q Consensus 260 ~GqPlHafD~dki~~~-i~vr~a~~~E~~~~Ld~~e~~L~~~~lvI~d~~~~ialaGImGg~~s~v~~~T~~illEsA~F 338 (805)
-=-.||+|+ +.|-+..+.+.+. |.+-++.|-| -+-+-...++
T Consensus 168 -------~~teKLhGt~~~v~~~tde~r~l--------------v~skgeePya-----------hdyddaqfi~----- 210 (374)
T TIGR02306 168 -------VLTEKLHGTSILVAYVTDEERFL--------------VLSKGEEPYA-----------HDYDDAQFIL----- 210 (374)
T ss_pred -------EEEECCCCCEEEEEEEECCCCEE--------------ECCCCCCCCC-----------CCCCCCEEEE-----
T ss_conf -------88742467627899975686077--------------5166788753-----------4644313565-----
Q ss_pred CHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 8788877887616540155441345530135889998887521
Q gi|254780316|r 339 DPINIARSGKNLGIITDSRYRFERGVDLQGMIPVLKHIVSLIL 381 (805)
Q Consensus 339 ~p~~Ir~tar~l~l~TdaS~RfERgvd~~~~~~al~r~~~Li~ 381 (805)
++|.+-|+-+|+..|=|++.-......++|+++-+.
T Consensus 211 -------~~~~l~Lre~a~n~yW~av~n~~~~~~a~rla~~~~ 246 (374)
T TIGR02306 211 -------ASRNLVLREDADNLYWKAVENYQIVDRAKRLAEALL 246 (374)
T ss_pred -------ECCCCCEEECCCCCCHHHHCHHHHHHHHHHHHHHHH
T ss_conf -------237620111334310000010268999999999872
No 41
>COG4937 Predicted regulatory domain of prephenate dehydrogenase [Translation, ribosomal structure and biogenesis]
Probab=97.75 E-value=0.00047 Score=48.00 Aligned_cols=61 Identities=18% Similarity=0.394 Sum_probs=50.6
Q ss_pred CCCCEEEEEEEECCCCCHHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC-EEEEEEEEEECC
Q ss_conf 88720018999668879999999997111003576989876367799884-269999998477
Q gi|254780316|r 713 LHPVKRDLAFIVDQHIPAGTLVNIIKNVDRLIDDVTVFDVFQGKSLGEGK-KSVAIQVLIQPL 774 (805)
Q Consensus 713 fP~v~RDls~iv~~~v~~~~I~~~i~~~~~ll~~v~lfDvY~g~~i~~gk-kSla~rl~fqs~ 774 (805)
.-...||+|.++++++.-+-|..+++-. +-+.++++.|+|+|++++++. +|+|||++--+.
T Consensus 80 L~~~v~DvSvlf~~~vDpEvil~avkll-k~~vd~~I~DvY~G~~i~ede~~siT~Ri~~f~~ 141 (171)
T COG4937 80 LEKKVIDVSVLFKKDVDPEVILNAVKLL-KKMVDIEIIDVYEGEKIEEDEYKSITFRIYGFNK 141 (171)
T ss_pred HHEEEEEEEEEECCCCCHHHHHHHHHHH-HHEEEEEEEEEECCCCCCCCCEEEEEEEEEEECH
T ss_conf 3007888999834899989987278765-3136789987202775798854358999999571
No 42
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=97.70 E-value=1.3e-05 Score=58.97 Aligned_cols=182 Identities=18% Similarity=0.163 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH-HCCCCCCCCCCCCCCCCHHHCHHHHHHHHHCCCCCCHHHHH
Q ss_conf 95467898878778774023210048257655200000-00024677643210151221106776432101586113454
Q gi|254780316|r 492 QSRTRYVKRVLASRAMMEVVNWSFISKEQSVLFGGGQR-ELEILNPISADMSNMRTSLLPGLLKATGRNVDRAIADFAIF 570 (805)
Q Consensus 492 ~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~-~i~l~NPlS~e~s~lR~SLlp~LL~~~~~N~~r~~~~i~lF 570 (805)
-+++|.+..+++..||-|+.+--++..++.+..+.+.+ .+.-.=---.+.-.||+-|.|+|-.-+..=.+---..+++|
T Consensus 210 gkler~it~ffvdrgfleikspilip~eyiermgid~d~elskQiFrvd~n~CLRPMLAPnLYnylrkL~R~lpdPIrIF 289 (420)
T PRK09537 210 GKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFRVDKNFCLRPMLAPNLYNYLRKLDRALPDPIKIF 289 (420)
T ss_pred HHHHHHHHHHHHCCCCEEECCCEECCHHHHHHHCCCCHHHHHHHHEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 67788889985414513514850421999998578860565545167434533241014269999999986168871588
Q ss_pred HHCCCCCCCCCCCC---C-EEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCC
Q ss_conf 30244447775443---1-0002210354310124620234544333314688875311111110145333033058865
Q gi|254780316|r 571 EVSHVYENDTPEGQ---K-YMAAGIRKGSSGIEGSGRLWSDKSEERCRFVDLFDAKADALSVIEPFVSLDSLRFESGAPS 646 (805)
Q Consensus 571 EiG~Vf~~~~~~~~---~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~df~dlKg~v~~ll~~l~~~~~~~~~~~~~~ 646 (805)
|||.+|.+++.+.+ + +++...+.| +|-. =-.+-..+..+++.+|. .+++...+.-
T Consensus 290 EIGpCyRKESdG~~HLeEFTMlNfcqmg------sgct-------------renle~~i~efl~~lgI--dfeiv~dscm 348 (420)
T PRK09537 290 EIGPCYRKESDGKEHLEEFTMVNFCQMG------SGCT-------------RENLEALITEFLNHLGI--DFEIVGDSCM 348 (420)
T ss_pred EECCCCCCCCCCHHHHHHHHHHHHHHHC------CCCC-------------HHHHHHHHHHHHHHCCC--EEEEECCCEE
T ss_conf 6204303444106788777777688644------8986-------------78899999999986197--2798425206
Q ss_pred CCCCCCEEEEEECCEEEEEEEEEECHHHHH-HCCCCCCEEEEEEEHHHHHHHH
Q ss_conf 678981699998792999998547789999-6687997899998787623545
Q gi|254780316|r 647 WYHPGRSGIIKTSAEIVLGYFGEFHPNILD-FFGLSNPICGFEVYLDSIPISQ 698 (805)
Q Consensus 647 ~~hPgrsa~I~~~gk~iiG~iG~ihP~i~~-~~~i~~~v~~~EI~ld~L~~~~ 698 (805)
.| |.+.+++- |..-++. |.+-|.-++ +|++..|..++-+-|+.|+...
T Consensus 349 VY--GdT~DvMh-gDlELsS-avvGP~pLDr~Wgi~kPWiGaGFGLERLLkV~ 397 (420)
T PRK09537 349 VY--GDTLDIMH-GDLELSS-AVVGPIPLDREWGIDKPWIGAGFGLERLLKVM 397 (420)
T ss_pred EE--CCHHHHHC-CCHHHCC-CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 85--32256542-6401103-54477445655576676202333099999998
No 43
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=97.55 E-value=7.8e-05 Score=53.52 Aligned_cols=179 Identities=17% Similarity=0.272 Sum_probs=121.4
Q ss_pred CCCCCCCCCCCCCCCCHHHCHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCEEHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 00246776432101512211067764321015861134543024444777544310002210354310124620234544
Q gi|254780316|r 531 LEILNPISADMSNMRTSLLPGLLKATGRNVDRAIADFAIFEVSHVYENDTPEGQKYMAAGIRKGSSGIEGSGRLWSDKSE 610 (805)
Q Consensus 531 i~l~NPlS~e~s~lR~SLlp~LL~~~~~N~~r~~~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 610 (805)
++=+-|.|+ .-+||+.+..|..-+++.=++|.-+.++||-|-++|+....+...++.... +.+..
T Consensus 173 fk~Lkp~s~-tlTLRSHMTsGWFItLs~i~~r~~~PlklFSIDRCFRREQ~ED~shLmtYh--------------SASCV 237 (536)
T COG2024 173 FKDLKPESS-TLTLRSHMTSGWFITLSEILKREDPPLKLFSIDRCFRREQREDASHLMTYH--------------SASCV 237 (536)
T ss_pred HHHCCCCCC-CEEHHHHCCCCEEEEHHHHHHCCCCCCEEEEHHHHHHHHHHCCHHHHHHHC--------------CCEEE
T ss_conf 763577777-505666334310135798872348984164256776655310156664320--------------34079
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECC--CCCCCCCCCEEEEEEC-------------CEEEEEEEEEECHHHH
Q ss_conf 333314688875311111110145333033058--8656789816999987-------------9299999854778999
Q gi|254780316|r 611 ERCRFVDLFDAKADALSVIEPFVSLDSLRFESG--APSWYHPGRSGIIKTS-------------AEIVLGYFGEFHPNIL 675 (805)
Q Consensus 611 ~~~~~~df~dlKg~v~~ll~~l~~~~~~~~~~~--~~~~~hPgrsa~I~~~-------------gk~iiG~iG~ihP~i~ 675 (805)
--...+..-+-|+..+.++..+|.. +++|.+. ...||.||-+-+++-- |=.-+..||.-+|.-+
T Consensus 238 vvde~vtvD~GKaVAEglL~qfGFe-~F~FrpDEK~SKYYvP~TQTEVyAyHPkL~gs~~kysdgWiEiATFGlYSP~AL 316 (536)
T COG2024 238 VVDEDVTVDDGKAVAEGLLRQFGFE-KFRFRPDEKKSKYYVPGTQTEVYAYHPKLVGSIEKYSDGWIEIATFGLYSPIAL 316 (536)
T ss_pred EECCCCCCCCCHHHHHHHHHHHCCC-CEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCCHHHH
T ss_conf 9758644354389999999971940-035466200355347996304777454003652125887089996035672779
Q ss_pred HHCCCCCCEEEEEEEHHHHHHHHHCC--CCCCCCCCCCCCCCCEEEEEEEEC
Q ss_conf 96687997899998787623545202--456631368988872001899966
Q gi|254780316|r 676 DFFGLSNPICGFEVYLDSIPISQKKR--TKTKKVVHLSSLHPVKRDLAFIVD 725 (805)
Q Consensus 676 ~~~~i~~~v~~~EI~ld~L~~~~~~~--~~~~~~~~~s~fP~v~RDls~iv~ 725 (805)
.+|+|+.||.-.-+-.+.|....... ...-.|..+..+-.+.||||=.+.
T Consensus 317 aeY~Id~pVMNLGlGVERlaMIl~g~~DVR~mvYpqi~ew~lSD~diA~mi~ 368 (536)
T COG2024 317 AEYGIDYPVMNLGLGVERLAMILHGADDVRSMVYPQIYEWRLSDRDIARMIR 368 (536)
T ss_pred HHCCCCCCEEECCHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCHHHHHHHHH
T ss_conf 8729997012032208999999817447766513453445666588886640
No 44
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit; InterPro: IPR004529 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases . This family describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this family. ; GO: 0000166 nucleotide binding, 0004826 phenylalanine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006432 phenylalanyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=97.54 E-value=0.0007 Score=46.74 Aligned_cols=146 Identities=15% Similarity=0.167 Sum_probs=106.0
Q ss_pred CCCCCCCCCHHHC---HHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCEEHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 6432101512211---0677643210158611345430244447775443100022103543101246202345443333
Q gi|254780316|r 538 SADMSNMRTSLLP---GLLKATGRNVDRAIADFAIFEVSHVYENDTPEGQKYMAAGIRKGSSGIEGSGRLWSDKSEERCR 614 (805)
Q Consensus 538 S~e~s~lR~SLlp---~LL~~~~~N~~r~~~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 614 (805)
.....+||+.-.+ -.+..++.+.+.+.+.+++|-+|+||.++...... .....+ ........
T Consensus 174 ~~~~~~lrt~~~~~~~~~~~~~~~~~~~~~pp~~~~~~~~~~r~~~~d~~h-~~~f~~--------------~~g~~~~~ 238 (362)
T TIGR00468 174 LARRLLLRTHTTASSAVQLRTLEENPKAKNPPIRIFCPGRVFRRDTVDATH-LPEFHQ--------------LEGLVVDK 238 (362)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCCCC-CCHHHH--------------EEEEEEEC
T ss_conf 665555431132135666666654101378862576410111023333101-410221--------------00235415
Q ss_pred CCCHHHHHHHHHHHHHHCCCC-CCEEEECCCCCCCCCCCEEEEEE-C-CE----------EEEEEEEEECHHHHHHCCCC
Q ss_conf 146888753111111101453-33033058865678981699998-7-92----------99999854778999966879
Q gi|254780316|r 615 FVDLFDAKADALSVIEPFVSL-DSLRFESGAPSWYHPGRSGIIKT-S-AE----------IVLGYFGEFHPNILDFFGLS 681 (805)
Q Consensus 615 ~~df~dlKg~v~~ll~~l~~~-~~~~~~~~~~~~~hPgrsa~I~~-~-gk----------~iiG~iG~ihP~i~~~~~i~ 681 (805)
.+.|-+++|.++.++..++.. ..++|.+.-.++-.|....++.. . ++ .-+|-.|.+||.+++..++.
T Consensus 239 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~p~~fp~t~p~~e~~~~~~~c~~gc~~c~~~~W~e~~g~g~~~p~~~~~~g~~ 318 (362)
T TIGR00468 239 NVSFTNLKGLLEEFLKKLFGEDTEVRFRPSYFPFTEPSAEVDVYCPECGKGCSVCKGTGWLELLGAGIFRPEVLEPLGID 318 (362)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCEEEEEHHHCCCCHHHCCCCEEEEECCCCCCHHHHHHCCCC
T ss_conf 66467889999999997413221202310336655555302442000013100101465035404553242355423787
Q ss_pred C---CEEEEEEEHHHHHHHH
Q ss_conf 9---7899998787623545
Q gi|254780316|r 682 N---PICGFEVYLDSIPISQ 698 (805)
Q Consensus 682 ~---~v~~~EI~ld~L~~~~ 698 (805)
. +++.+-+-++.+....
T Consensus 319 ~~~~~~~~~g~g~~r~~~~~ 338 (362)
T TIGR00468 319 PEEYPGLAWGLGIERLAMLK 338 (362)
T ss_pred CCCCEEEEECCCHHHHHHHH
T ss_conf 31011343212401244545
No 45
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=97.49 E-value=0.00071 Score=46.71 Aligned_cols=178 Identities=13% Similarity=0.110 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 95467898878778774023210048257655200000000246776432101512211067764321015861134543
Q gi|254780316|r 492 QSRTRYVKRVLASRAMMEVVNWSFISKEQSVLFGGGQRELEILNPISADMSNMRTSLLPGLLKATGRNVDRAIADFAIFE 571 (805)
Q Consensus 492 ~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~i~l~NPlS~e~s~lR~SLlp~LL~~~~~N~~r~~~~i~lFE 571 (805)
++..+.+|+.+...||+|+.+..|++.+....-+...+...-.+....+.=+||++.-|++........ +.. .+++++
T Consensus 3 ~~ie~~~r~~~~~~G~~ev~~P~l~~~~~~~~sg~~~~~~~~~~~~~~~~~~L~pt~e~~~~~~~~~~~-~dL-P~r~~~ 80 (211)
T cd00768 3 SKIEQKLRRFMAELGFQEVETPIVEREPLLEKAGHEPKDLLPVGAENEEDLYLRPTLEPGLVRLFVSHI-RKL-PLRLAE 80 (211)
T ss_pred HHHHHHHHHHHHHCCCEEEECCEECCHHHHHHCCCCHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHH-HHC-CHHHHE
T ss_conf 899999999999869989999834279999750676222301104679769995168499999975247-657-778643
Q ss_pred HCCCCCCCCCCCCCEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC-EEEECCCCCC--C
Q ss_conf 024444777544310002210354310124620234544333314688875311111110145333-0330588656--7
Q gi|254780316|r 572 VSHVYENDTPEGQKYMAAGIRKGSSGIEGSGRLWSDKSEERCRFVDLFDAKADALSVIEPFVSLDS-LRFESGAPSW--Y 648 (805)
Q Consensus 572 iG~Vf~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~df~dlKg~v~~ll~~l~~~~~-~~~~~~~~~~--~ 648 (805)
+|++|+.+... .|+...+--....+-.+... ....--+..+....+.++..++.... +......... -
T Consensus 81 ~~~~fR~E~~~------~Gl~RvreF~~~e~~~f~~~---~~~~~~~~~~~~~~~~i~~~lgl~~~~~~~~~~~~~~~~~ 151 (211)
T cd00768 81 IGPAFRNEGGR------RGLRRVREFTQLEGEVFGED---GEEASEFEELIELTEELLRALGIKLDIVFVEKTPGEFSPG 151 (211)
T ss_pred ECCEECCCCCC------CCCCCCCCEEEEEEEEEECC---HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCC
T ss_conf 20056057888------88446046889847999884---8889999999999999999749988869999778676664
Q ss_pred CCCCEEEEEEC-----CEEEEEEEEEECHHHHHHCCCC
Q ss_conf 89816999987-----9299999854778999966879
Q gi|254780316|r 649 HPGRSGIIKTS-----AEIVLGYFGEFHPNILDFFGLS 681 (805)
Q Consensus 649 hPgrsa~I~~~-----gk~iiG~iG~ihP~i~~~~~i~ 681 (805)
+.+.+.+|.+. +.. +|.++-....-++.++++
T Consensus 152 ~a~~~~Die~~~p~~~~~E-v~s~~~~~d~qsr~~~i~ 188 (211)
T cd00768 152 GAGPGFEIEVDHPEGRGLE-IGSGGYRQDEQARAADLY 188 (211)
T ss_pred CCEEEEEEEEECCCCCEEE-EECEECCCCHHHHHCCCE
T ss_conf 5235455789837897999-935461677878846989
No 46
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase; InterPro: IPR005246 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . All known phenylalanyl-tRNA synthetases, excepting a monomeric mitochondrial form, have an alpha 2 beta 2 heterotetrameric structure. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains but is longer and of unknown function; more generally, it resembles class 2 aminoacyl tRNA ligases. .
Probab=97.48 E-value=0.00031 Score=49.24 Aligned_cols=213 Identities=19% Similarity=0.330 Sum_probs=135.1
Q ss_pred CCCCCCCCCCCCCCCCHHHCHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCEEHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 00246776432101512211067764321015861134543024444777544310002210354310124620234544
Q gi|254780316|r 531 LEILNPISADMSNMRTSLLPGLLKATGRNVDRAIADFAIFEVSHVYENDTPEGQKYMAAGIRKGSSGIEGSGRLWSDKSE 610 (805)
Q Consensus 531 i~l~NPlS~e~s~lR~SLlp~LL~~~~~N~~r~~~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 610 (805)
++=+-|+|.. .+||+.+..|-.=+++.=..+..=.++||=|-|+|+.+..+...++.+.. +..+.+.
T Consensus 183 fkdLKP~S~t-lTLRSHMTsGWFItLs~i~dk~~lPlKLFSIDRCFRREQ~ED~shLmtYh-SASCVvV----------- 249 (558)
T TIGR00470 183 FKDLKPVSST-LTLRSHMTSGWFITLSSIADKLKLPLKLFSIDRCFRREQKEDASHLMTYH-SASCVVV----------- 249 (558)
T ss_pred HHCCCCCCCC-CCCHHHCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCEE-EEEEEEE-----------
T ss_conf 0016886554-32001010027888987875158971122003231446643531001134-5466785-----------
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCC--CCCCCCCCEEEEEE------------CCE-EEEEEEEEECHHHH
Q ss_conf 3333146888753111111101453330330588--65678981699998------------792-99999854778999
Q gi|254780316|r 611 ERCRFVDLFDAKADALSVIEPFVSLDSLRFESGA--PSWYHPGRSGIIKT------------SAE-IVLGYFGEFHPNIL 675 (805)
Q Consensus 611 ~~~~~~df~dlKg~v~~ll~~l~~~~~~~~~~~~--~~~~hPgrsa~I~~------------~gk-~iiG~iG~ihP~i~ 675 (805)
...+..=+-|...|+||+++|.. +++|.+++ ..||.|+-+-+++- ..+ .-++.||.-+|.-+
T Consensus 250 --deevsvDdGKaVAEgLL~qfGF~-~FrFrpDEKkSKYYiP~TQTEVyAyHPkL~GsstkysdeWiEvATFG~YSPiAL 326 (558)
T TIGR00470 250 --DEEVSVDDGKAVAEGLLEQFGFE-KFRFRPDEKKSKYYIPDTQTEVYAYHPKLKGSSTKYSDEWIEVATFGVYSPIAL 326 (558)
T ss_pred --CCCCCCCCCHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEECCCCHHHHH
T ss_conf --77124364268899999870854-475057646454357888505677626456664410476479874343104677
Q ss_pred HHCCCCCCEEEEEEEHHHHHHHHHCCCCCCCCCCCCC----CCCCEEEEEEEEC-CCCC--------HHHHHHHHHHCCC
Q ss_conf 9668799789999878762354520245663136898----8872001899966-8879--------9999999971110
Q gi|254780316|r 676 DFFGLSNPICGFEVYLDSIPISQKKRTKTKKVVHLSS----LHPVKRDLAFIVD-QHIP--------AGTLVNIIKNVDR 742 (805)
Q Consensus 676 ~~~~i~~~v~~~EI~ld~L~~~~~~~~~~~~~~~~s~----fP~v~RDls~iv~-~~v~--------~~~I~~~i~~~~~ 742 (805)
.+|+|+.||.=.-+=.+.|...-.......+.. +|+ |--+.||||=.+- +.+| +++|+++.+. ++
T Consensus 327 a~Y~Id~pVMNLGlGVERlAMIlygy~DVR~MV-YPQiyGE~rLSDrDIA~~irv~~vP~t~~g~~~a~~iv~~~~a-ha 404 (558)
T TIGR00470 327 AKYDIDVPVMNLGLGVERLAMILYGYEDVRKMV-YPQIYGEYRLSDRDIAEMIRVDKVPVTAEGLKLAEEIVETAEA-HA 404 (558)
T ss_pred HHCCCCCCEEECCCHHHHHHHHHHCHHHHHHCC-CCCCCCEEECCHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHH-CC
T ss_conf 416849652225631876787781403343226-8842122312336667450104675228899999999999996-07
Q ss_pred CEEEEEEEEEE-ECCCCCCC
Q ss_conf 03576989876-36779988
Q gi|254780316|r 743 LIDDVTVFDVF-QGKSLGEG 761 (805)
Q Consensus 743 ll~~v~lfDvY-~g~~i~~g 761 (805)
=-.+=.=|.+| +|+=+|..
T Consensus 405 d~pSPCSfev~regef~Grr 424 (558)
T TIGR00470 405 DEPSPCSFEVYREGEFLGRR 424 (558)
T ss_pred CCCCCCEEEEEECCCCCCCC
T ss_conf 78889418998422003661
No 47
>KOG2784 consensus
Probab=97.37 E-value=0.0021 Score=43.36 Aligned_cols=222 Identities=15% Similarity=0.215 Sum_probs=129.5
Q ss_pred CCCCCCCC-CHHHHHHHHHHHCCCCCCCCCCCC---CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH-H
Q ss_conf 03454334-402567676765352334667655---443457678998895467898878778774023210048257-6
Q gi|254780316|r 447 PSWRQDVE-EKADLVEEILRIYGVDQIKSEPLP---LTQVEDKRNLSLQQSRTRYVKRVLASRAMMEVVNWSFISKEQ-S 521 (805)
Q Consensus 447 Ps~R~DI~-~e~DLiEEIaRiyGYdnIp~~~l~---~~~~~~~~~~~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~-~ 521 (805)
|.|-.+++ .+.||--|..----|...+-++.. ....+..+.+.+.-+.+..+|+++..+||.|.-|+.++...- +
T Consensus 166 p~Fst~l~k~eTdLT~emi~~gsw~dl~FK~YNF~a~G~~p~~G~lHPLmKvR~eFRqiF~emGFsEMptn~yVEssFWN 245 (483)
T KOG2784 166 PNFSTSLTKLETDLTSEMIASGSWKDLKFKPYNFNAEGVPPSSGHLHPLMKVREEFRQIFFEMGFSEMPTNNYVESSFWN 245 (483)
T ss_pred CCCCCHHHHHHHHCCHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCC
T ss_conf 76543377776432598860585331567646754678999777655488889999999998062306654401102445
Q ss_pred --HHHHH-------HHHHCCCCCCCCCCC----------------------------------CCCCCH---HHCHHHHH
Q ss_conf --55200-------000000246776432----------------------------------101512---21106776
Q gi|254780316|r 522 --VLFGG-------GQRELEILNPISADM----------------------------------SNMRTS---LLPGLLKA 555 (805)
Q Consensus 522 --~~~~~-------~~~~i~l~NPlS~e~----------------------------------s~lR~S---Llp~LL~~ 555 (805)
.+|.+ ..+..=|.+|.+++. .+|||. .-..+|-.
T Consensus 246 FDALfqPQqHpARDahDTFfl~~Pa~s~~~p~dY~~rVk~vH~~G~ygs~GY~y~wk~eEaqKnvLRTHTTavSArmLy~ 325 (483)
T KOG2784 246 FDALFQPQQHPARDAHDTFFLKDPATSTKFPEDYLERVKAVHEQGGYGSIGYRYNWKLEEAQKNVLRTHTTAVSARMLYR 325 (483)
T ss_pred CHHHCCCCCCCCCCCCCCEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 30004755587533345247637133036989999999988716886776567888989998777765047764999999
Q ss_pred HHHHCCCCCCHHHHHHHCCCCCCCCCCC----CCEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 4321015861134543024444777544----310002210354310124620234544333314688875311111110
Q gi|254780316|r 556 TGRNVDRAIADFAIFEVSHVYENDTPEG----QKYMAAGIRKGSSGIEGSGRLWSDKSEERCRFVDLFDAKADALSVIEP 631 (805)
Q Consensus 556 ~~~N~~r~~~~i~lFEiG~Vf~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~df~dlKg~v~~ll~~ 631 (805)
++ +.+++..++|-|-+||+++.-.. +-+.+.|++. .+....-++.|.++.++..
T Consensus 326 LA---k~~f~p~K~FSIDrVFRNEtvDaTHLAEFHQVEGvia-------------------d~gltLgdLig~l~~ff~~ 383 (483)
T KOG2784 326 LA---KKGFKPAKYFSIDRVFRNETVDATHLAEFHQVEGVIA-------------------DKGLTLGDLIGILMEFFTK 383 (483)
T ss_pred HH---HCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHCEEEE-------------------CCCCCHHHHHHHHHHHHHC
T ss_conf 97---4799851101041344034320577877763203651-------------------3787699999999999732
Q ss_pred CCCCCCEEEECCCCCCCCCCCEEEEEECC---EEEEEEEEEECHHHHHHCCCCCCEEEEEEEH
Q ss_conf 14533303305886567898169999879---2999998547789999668799789999878
Q gi|254780316|r 632 FVSLDSLRFESGAPSWYHPGRSGIIKTSA---EIVLGYFGEFHPNILDFFGLSNPICGFEVYL 691 (805)
Q Consensus 632 l~~~~~~~~~~~~~~~~hPgrsa~I~~~g---k~iiG~iG~ihP~i~~~~~i~~~v~~~EI~l 691 (805)
++. .+++|++.-.+|-||..---.+-.| -.-+|--|..||..+..+|++..+.+..-.|
T Consensus 384 lg~-tnlrfKPaynpYtepsmeif~yh~gl~kwvEvgnSg~frPeml~pMGLp~Dv~vl~~gl 445 (483)
T KOG2784 384 LGA-TNLRFKPAYNPYTEPSMEIFSYHHGLFKWVEVGNSGMFRPEMLLPMGLPMDVVVLAWGL 445 (483)
T ss_pred CCC-CCCCCCCCCCCCCCCEEEEEEECCCCCEEEEECCCCCCCHHHHHCCCCCCCCEEEEECC
T ss_conf 687-66422699898888635787740565148997688887876760568986532333044
No 48
>TIGR02367 PylS pyrrolysyl-tRNA synthetase; InterPro: IPR012739 PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, e.g. trimethylamine methyltransferase. .
Probab=97.27 E-value=0.0002 Score=50.65 Aligned_cols=180 Identities=17% Similarity=0.213 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCC--CCCCCCCCCHHHCHHHHHHHHHCCCCCC-HHH
Q ss_conf 9546789887877877402321004825765520000000024677--6432101512211067764321015861-134
Q gi|254780316|r 492 QSRTRYVKRVLASRAMMEVVNWSFISKEQSVLFGGGQRELEILNPI--SADMSNMRTSLLPGLLKATGRNVDRAIA-DFA 568 (805)
Q Consensus 492 ~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~i~l~NPl--S~e~s~lR~SLlp~LL~~~~~N~~r~~~-~i~ 568 (805)
-+++|.+..+++..||-|+.+--|+..++.+..+.+.+ .+|..-+ -...=.||+-|.|.|.+-+.. +.|-.+ .++
T Consensus 243 Gkler~it~ffvdrGfleiksPiliP~ey~ermGi~nd-telskqifrvdkn~ClrPmlaP~lynylrk-ldr~lP~Pik 320 (453)
T TIGR02367 243 GKLEREITKFFVDRGFLEIKSPILIPLEYVERMGIDND-TELSKQIFRVDKNLCLRPMLAPTLYNYLRK-LDRILPDPIK 320 (453)
T ss_pred HHHHHHHHHHHHHCCEEEECCCCCCCHHHHHHCCCCCC-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-HHHHCCCCEE
T ss_conf 46766676665312402323631010568865077640-256666664410010121000568999999-8753789647
Q ss_pred HHHHCCCCCCCCCCCC---C-EEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCC
Q ss_conf 5430244447775443---1-00022103543101246202345443333146888753111111101453330330588
Q gi|254780316|r 569 IFEVSHVYENDTPEGQ---K-YMAAGIRKGSSGIEGSGRLWSDKSEERCRFVDLFDAKADALSVIEPFVSLDSLRFESGA 644 (805)
Q Consensus 569 lFEiG~Vf~~~~~~~~---~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~df~dlKg~v~~ll~~l~~~~~~~~~~~~ 644 (805)
+||+|.+|.++..+.+ + .++...+.| +|-. --.+.+++..+++.+. +.|+--.
T Consensus 321 ~fe~GPCyrkesdGkehleeftm~nfCqmG------sGCt-------------renle~~i~~fl~~l~----idf~ivG 377 (453)
T TIGR02367 321 VFEVGPCYRKESDGKEHLEEFTMLNFCQMG------SGCT-------------RENLEALIKEFLDYLE----IDFKIVG 377 (453)
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHCC------CCCC-------------HHHHHHHHHHHHHHHC----CCEEEEC
T ss_conf 986067524356533566666655543147------8732-------------6779999999887615----4247852
Q ss_pred CCCCCCCCEEEEEECCEEE--EEEEEEECHHHHHHCCCCCCEEEEEEEHHHHHHHHH
Q ss_conf 6567898169999879299--999854778999966879978999987876235452
Q gi|254780316|r 645 PSWYHPGRSGIIKTSAEIV--LGYFGEFHPNILDFFGLSNPICGFEVYLDSIPISQK 699 (805)
Q Consensus 645 ~~~~hPgrsa~I~~~gk~i--iG~iG~ihP~i~~~~~i~~~v~~~EI~ld~L~~~~~ 699 (805)
..-+--|-+-+|+- |+.- -.++|-+. +-.+|||..|..++-+-|+.|+....
T Consensus 378 dsCmvyGdtld~mh-GdlelssavvGP~~--ldreWGidkPWiGaGfGlerllkv~h 431 (453)
T TIGR02367 378 DSCMVYGDTLDVMH-GDLELSSAVVGPVS--LDREWGIDKPWIGAGFGLERLLKVKH 431 (453)
T ss_pred CEEEEECCHHEEEE-CCHHHCCEEECCCC--CCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 42465335010001-32000000223632--23013788872125323678887763
No 49
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=96.44 E-value=0.03 Score=35.15 Aligned_cols=90 Identities=12% Similarity=0.141 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH-H--HHHHHCCCCCCCCCCCCCCCCHHHCHHHHHHHHHCCCCCCHH
Q ss_conf 8954678988787787740232100482576552-0--000000024677643210151221106776432101586113
Q gi|254780316|r 491 QQSRTRYVKRVLASRAMMEVVNWSFISKEQSVLF-G--GGQRELEILNPISADMSNMRTSLLPGLLKATGRNVDRAIADF 567 (805)
Q Consensus 491 ~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~-~--~~~~~i~l~NPlS~e~s~lR~SLlp~LL~~~~~N~~r~~~~i 567 (805)
.+...+++++.+...||.|+.|-.|-..+..... + ..+...++..+ +-+.=.||+-+.++..+.++.|.......+
T Consensus 5 r~~i~~~l~~~f~~~Gy~~I~~P~lE~~d~~~~~~~~~~~~~~~~f~D~-~g~~l~LRpD~T~~iaR~~~~~~~~~~~p~ 83 (261)
T cd00773 5 RRYIEDTLREVFERYGYEEIDTPVFEYTELFLRKSGDEVSKEMYRFKDK-GGRDLALRPDLTAPVARAVAENLLSLPLPL 83 (261)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCCCCCHHHHCCCCCCCCHHCEEEEECC-CCCEEEECCCCCHHHHHHHHHHHCCCCCCE
T ss_conf 9999999999999869978667764527675244653102116999979-999897678662799999997415378885
Q ss_pred HHHHHCCCCCCCCC
Q ss_conf 45430244447775
Q gi|254780316|r 568 AIFEVSHVYENDTP 581 (805)
Q Consensus 568 ~lFEiG~Vf~~~~~ 581 (805)
|+|-+|+||+.+.+
T Consensus 84 r~~Y~g~VfR~~~~ 97 (261)
T cd00773 84 KLYYIGPVFRYERP 97 (261)
T ss_pred EEEEECCEEEECCC
T ss_conf 89997318997689
No 50
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=94.75 E-value=0.043 Score=34.09 Aligned_cols=53 Identities=8% Similarity=0.055 Sum_probs=37.7
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEECCCCC-CCEEEEEECCCCCCHH
Q ss_conf 8888640132103999998999860870000010223-3326886235543114
Q gi|254780316|r 236 QRLKAVGLRSISALVDITNYVSLDRGYPSHVFDASRI-SDVLTVRRACSGEKIL 288 (805)
Q Consensus 236 ~rL~~~Gir~inniVDitNyvmle~GqPlHafD~dki-~~~i~vr~a~~~E~~~ 288 (805)
.|+.++|++++|+|+|.+||+|.+.|||+|++|.++- ...-+++...+|+.+.
T Consensus 132 r~~~~ig~~d~~kI~~~i~~~~~~~ge~~~~Ld~~~~~~~~~i~~~~~~g~~~~ 185 (546)
T PRK09616 132 RKKVAIGIHDLDKIKPPIYYKAVSPDEKFVPLGYDEEMTLREILEKHPKGREYG 185 (546)
T ss_pred CCCCCCCCCCHHHCCCCEEEEECCCCCEEEECCCCCCCCHHHHHHHHCCCCHHH
T ss_conf 421345650488748957999878997587378742268999987400341000
No 51
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=94.21 E-value=0.039 Score=34.38 Aligned_cols=62 Identities=18% Similarity=0.295 Sum_probs=34.6
Q ss_pred EEECHHHHHHCCCCCCEEEEEEEHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCCC--HHHHHHHHHHCC
Q ss_conf 54778999966879978999987876235452024566313689888720018999668879--999999997111
Q gi|254780316|r 668 GEFHPNILDFFGLSNPICGFEVYLDSIPISQKKRTKTKKVVHLSSLHPVKRDLAFIVDQHIP--AGTLVNIIKNVD 741 (805)
Q Consensus 668 G~ihP~i~~~~~i~~~v~~~EI~ld~L~~~~~~~~~~~~~~~~s~fP~v~RDls~iv~~~v~--~~~I~~~i~~~~ 741 (805)
|.-+ .+.+.|+-+.|..+|-+.+|.|........ +.-.+++-+..+++.. +-.+.+.+|+.|
T Consensus 289 GRYD-~L~~~fG~~~PAvGfa~g~eRl~~~l~~~~-----------~~~~~~~~v~~~~~~~~~a~~~a~~LR~~G 352 (388)
T PRK12292 289 GRYD-DLGGRFGRARPATGFSLDLDRLRELLPEEE-----------ERKQKDLLILAPWERLEAALAAAQALRKKG 352 (388)
T ss_pred CCHH-HHHHHHCCCCCEEEEEECHHHHHHHHHHCC-----------CCCCCEEEEECCHHHHHHHHHHHHHHHHCC
T ss_conf 5664-799983899971589963999999864205-----------678867999858676999999999999779
No 52
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=93.91 E-value=0.049 Score=33.66 Aligned_cols=22 Identities=32% Similarity=0.727 Sum_probs=10.5
Q ss_pred HHHHCCCC--CCEEEEEEEHHHHH
Q ss_conf 99966879--97899998787623
Q gi|254780316|r 674 ILDFFGLS--NPICGFEVYLDSIP 695 (805)
Q Consensus 674 i~~~~~i~--~~v~~~EI~ld~L~ 695 (805)
++..|+-+ .|.++|-+.+|.|.
T Consensus 345 L~~~fG~~~~~PAvGfaigidRl~ 368 (373)
T PRK12295 345 LLTRLGAGEPIPAVGFSIWLDRLA 368 (373)
T ss_pred HHHHHCCCCCCCEEEEEEEHHHHH
T ss_conf 999858999986369997099985
No 53
>pfam00587 tRNA-synt_2b tRNA synthetase class II core domain (G, H, P, S and T). Other tRNA synthetase sub-families are too dissimilar to be included. This domain is the core catalytic domain of tRNA synthetases and includes glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases.
Probab=93.01 E-value=0.096 Score=31.61 Aligned_cols=88 Identities=8% Similarity=0.087 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH----HHHHCCCCCCCCCCCCCCCCHHHCHHHHHHHHHCCC-CCCH
Q ss_conf 95467898878778774023210048257655200----000000246776432101512211067764321015-8611
Q gi|254780316|r 492 QSRTRYVKRVLASRAMMEVVNWSFISKEQSVLFGG----GQRELEILNPISADMSNMRTSLLPGLLKATGRNVDR-AIAD 566 (805)
Q Consensus 492 ~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~----~~~~i~l~NPlS~e~s~lR~SLlp~LL~~~~~N~~r-~~~~ 566 (805)
+...+.+++.+...||.|+.|-.|...+....-+. .++..++.+ ...+.=+||++.-+++...++.+..- ..-.
T Consensus 3 ~~l~~~~~~~~~~~G~~~i~tP~l~~~~~~~~sg~~~~~~~~my~~~d-~~~~~l~Lrp~~~~~~~~~~~~~~~~~~~lP 81 (170)
T pfam00587 3 NALENFIRDLFKRYGYQEVDTPILEPKELWEGSGHWDDYFDEMYRFKD-RGGEELYLRPTAEVGITRLFKNEILSYRDLP 81 (170)
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEHHHHHHCCCCCCCHHHEEEEEC-CCCCEEEEECCCCHHHHHHHHHHCCCCCCCC
T ss_conf 999999999999859989999917567898344776557531256735-8997688732574588899886200323586
Q ss_pred HHHHHHCCCCCCCC
Q ss_conf 34543024444777
Q gi|254780316|r 567 FAIFEVSHVYENDT 580 (805)
Q Consensus 567 i~lFEiG~Vf~~~~ 580 (805)
+++|++|+||+.+.
T Consensus 82 ~r~~~~~~~fR~E~ 95 (170)
T pfam00587 82 LKLYQIGPCFRYEA 95 (170)
T ss_pred CEEECCCCCCCCCC
T ss_conf 01330653006777
No 54
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=92.93 E-value=0.088 Score=31.84 Aligned_cols=32 Identities=19% Similarity=0.590 Sum_probs=21.0
Q ss_pred EEECHHHHHHCC-CCCCEEEEEEEHHHHHHHHHC
Q ss_conf 547789999668-799789999878762354520
Q gi|254780316|r 668 GEFHPNILDFFG-LSNPICGFEVYLDSIPISQKK 700 (805)
Q Consensus 668 G~ihP~i~~~~~-i~~~v~~~EI~ld~L~~~~~~ 700 (805)
|.-+ .+...|+ -+.|..+|-+.++.+......
T Consensus 286 GRYD-~L~~~fgg~~~PAvGfa~gieRi~~~l~~ 318 (417)
T PRK00037 286 GRYD-GLVEQFGGPPTPAVGFAIGIERLLLLLEE 318 (417)
T ss_pred CCHH-HHHHHHCCCCCCEEEEEECHHHHHHHHHH
T ss_conf 7315-78998489978747898639999999996
No 55
>TIGR02222 chap_CsaA export-related chaperone CsaA; InterPro: IPR008231 The CsaA protein is required for SecA-mediated translocation of a subset of proteins , . CsaA and its relatives are typified by the presence of little more than a tRNA-binding motif that adopts an OB-fold. The Aquifex aeolicus member, Trbp111, has been demonstrated to bind tRNA, likely in a structure-specific manner .; GO: 0000049 tRNA binding, 0008565 protein transporter activity, 0015031 protein transport.
Probab=92.71 E-value=0.096 Score=31.60 Aligned_cols=75 Identities=21% Similarity=0.389 Sum_probs=50.5
Q ss_pred CEEEEEEEEEEECCCCC--CCEEEEECCCCCE--------------------EEEECCCCCCCCCCEEEEECCCCEECCC
Q ss_conf 74899999975657998--7089997599957--------------------9897548345589789896687792589
Q gi|254780316|r 43 PFTIVKVLSVERNPDLD--CAILRIDTGKHQE--------------------IQVVCGAPNVRVGLLGVWAPPGSCIPEN 100 (805)
Q Consensus 43 ~vvvg~v~~~~~hP~ad--l~v~~Vd~g~~~~--------------------~~IvcgA~Nv~~g~~V~~A~~Ga~lp~g 100 (805)
.+.||+|++++|||.|- -....||+|+ +. ++||| +-|
T Consensus 8 dlRVGrIv~a~~fPeARKPAY~L~vDfG~-elG~k~SSAQiT~lY~~E~L~gr~Vva-VVN------------------- 66 (107)
T TIGR02222 8 DLRVGRIVKAEPFPEARKPAYKLEVDFGE-ELGVKTSSAQITKLYKPEDLVGRLVVA-VVN------------------- 66 (107)
T ss_pred EECCCCEEEECCCCCCCCCEEEEEEECCC-CCCCCCCHHHHHCCCCCCCCCCCEEEE-EEC-------------------
T ss_conf 30226378616898557871799970179-777414405641237833001977899-981-------------------
Q ss_pred CEEEEEEHHCCCCCCCHHHHHHHCCCCCCCCCEEEE--CCCCCCCCCH
Q ss_conf 839833120586505454118876998547750781--6888888455
Q gi|254780316|r 101 NMIVNVRKIRGIESTGMMCSEKELMLSDDSASIMEL--PIDAPVGGRL 146 (805)
Q Consensus 101 ~~~i~~~~irGv~S~GMlCS~~ELgl~~~~~gI~~l--~~~~~~G~~~ 146 (805)
.-+++|-|+.||=.- ||..++.+-+.-+ |.+.|+|+-+
T Consensus 67 ---FppKqiA~f~SEVLV-----lG~~~~~g~VvL~~pD~~vp~G~k~ 106 (107)
T TIGR02222 67 ---FPPKQIAGFKSEVLV-----LGVIDEEGEVVLLQPDREVPLGTKI 106 (107)
T ss_pred ---CCCCEECCCEEEEEE-----CCCCCCCCCEEEEECCCCCCCCCCC
T ss_conf ---887305692404886-----1833787877986348668898504
No 56
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.
Probab=92.15 E-value=0.95 Score=24.54 Aligned_cols=92 Identities=7% Similarity=0.082 Sum_probs=56.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH----HHHHHCCCCCCCCCCCCCCCCHHHCHHHHHHHHHCC-C
Q ss_conf 99889546789887877877402321004825765520----000000024677643210151221106776432101-5
Q gi|254780316|r 488 LSLQQSRTRYVKRVLASRAMMEVVNWSFISKEQSVLFG----GGQRELEILNPISADMSNMRTSLLPGLLKATGRNVD-R 562 (805)
Q Consensus 488 ~~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~----~~~~~i~l~NPlS~e~s~lR~SLlp~LL~~~~~N~~-r 562 (805)
....++..+.+++.+...|++|+.+-.|++.+..+.-+ +.++...+.+--.++ =+|||+==+.+....+.-.+ +
T Consensus 31 ~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~f~~emf~v~d~~~~~-~~L~PT~E~~~~~~~~~~i~Sy 109 (255)
T cd00779 31 LRVLKKIENIIREEMNKIGAQEILMPILQPAELWKESGRWDAYGPELLRLKDRHGKE-FLLGPTHEEVITDLVANEIKSY 109 (255)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHCCCCCCCCCEEEEECCCCCE-EEECCCCHHHHHHHHHHHCCCH
T ss_conf 999999999999999985998997653473888744253013687315445378877-7316887488999998650361
Q ss_pred CCCHHHHHHHCCCCCCCC
Q ss_conf 861134543024444777
Q gi|254780316|r 563 AIADFAIFEVSHVYENDT 580 (805)
Q Consensus 563 ~~~~i~lFEiG~Vf~~~~ 580 (805)
+.-.++++++|.+|+.+.
T Consensus 110 rdLPl~~~q~~~~fR~E~ 127 (255)
T cd00779 110 KQLPLNLYQIQTKFRDEI 127 (255)
T ss_pred HHCCEEEECCCCEECCCC
T ss_conf 225745413533542566
No 57
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=91.45 E-value=0.15 Score=30.17 Aligned_cols=80 Identities=15% Similarity=0.222 Sum_probs=44.6
Q ss_pred CCCCCEEEEEECC--EEEEEEEEEECHHHHHHCCCCCCEEEEEEEHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEC
Q ss_conf 7898169999879--29999985477899996687997899998787623545202456631368988872001899966
Q gi|254780316|r 648 YHPGRSGIIKTSA--EIVLGYFGEFHPNILDFFGLSNPICGFEVYLDSIPISQKKRTKTKKVVHLSSLHPVKRDLAFIVD 725 (805)
Q Consensus 648 ~hPgrsa~I~~~g--k~iiG~iG~ihP~i~~~~~i~~~v~~~EI~ld~L~~~~~~~~~~~~~~~~s~fP~v~RDls~iv~ 725 (805)
||.|-..+++..| +.+ +-=|.-+ .+.+.||-..|..+|-++++.|..... ..|. .+ .+.+|
T Consensus 277 YyTG~vFe~y~~g~~~~I-a~GGRYD-~L~~~fG~~~PA~GFsl~l~rL~~~~~------------~~~~--~~-~i~~p 339 (391)
T PRK12421 277 YHTGLVFAAYAPGRGAPL-ARGGRYD-GIGEAFGRARPATGFSMDLRALLALLT------------QFAE--PE-AVLAP 339 (391)
T ss_pred CCCEEEEEEEECCCCCEE-ECCCCCC-CHHHHCCCCCCEEEEEECHHHHHHHCC------------CCCC--CC-EEEEE
T ss_conf 454489999948988835-4166637-177753999980489966999997265------------6688--88-79976
Q ss_pred CCCCHH--HHHHHHHHCCCCE
Q ss_conf 887999--9999997111003
Q gi|254780316|r 726 QHIPAG--TLVNIIKNVDRLI 744 (805)
Q Consensus 726 ~~v~~~--~I~~~i~~~~~ll 744 (805)
..-..+ ..++.+|..|..+
T Consensus 340 ~~~~~~~~~~i~~LR~~G~~V 360 (391)
T PRK12421 340 WGDDPDLLAAIAELRQQGERV 360 (391)
T ss_pred CCCCHHHHHHHHHHHHCCCEE
T ss_conf 799799999999999679799
No 58
>CHL00192 syfB phenylalanyl-tRNA synthetase beta chain; Provisional
Probab=91.13 E-value=0.23 Score=28.85 Aligned_cols=68 Identities=18% Similarity=0.225 Sum_probs=32.0
Q ss_pred CEEEEEECCEEEEEEEEEECHHHHHH-CCCCCCEEEEEEEHHHHHHHHHCCCCCCCCCCCCCCCCCEEE----EEEEE-C
Q ss_conf 16999987929999985477899996-687997899998787623545202456631368988872001----89996-6
Q gi|254780316|r 652 RSGIIKTSAEIVLGYFGEFHPNILDF-FGLSNPICGFEVYLDSIPISQKKRTKTKKVVHLSSLHPVKRD----LAFIV-D 725 (805)
Q Consensus 652 rsa~I~~~gk~iiG~iG~ihP~i~~~-~~i~~~v~~~EI~ld~L~~~~~~~~~~~~~~~~s~fP~v~RD----ls~iv-~ 725 (805)
|=-.+.++.+. -.++|--.+.+. -++-..+.+|.++-.+ ..|.-++- +.|-- +
T Consensus 615 RDlalvv~~~v---~~~~I~~~I~~~~~~ll~~v~lfDvY~g~------------------~i~~gkKSla~~l~fq~~~ 673 (702)
T CHL00192 615 RDLSLIIPKNM---TISFLLKLILQFGNNLLESITLFDQYKGK------------------SIGEGKKSLGLRLTYRSNK 673 (702)
T ss_pred EEEEEEECCCC---CHHHHHHHHHHCCCCCEEEEEEEEEECCC------------------CCCCCCEEEEEEEEEECCC
T ss_conf 68999989999---79999999986292417178899985799------------------9899966999999998989
Q ss_pred CCCCHHHHHHHHHHC
Q ss_conf 887999999999711
Q gi|254780316|r 726 QHIPAGTLVNIIKNV 740 (805)
Q Consensus 726 ~~v~~~~I~~~i~~~ 740 (805)
+..+-++|.+++.+.
T Consensus 674 rTLtd~eV~~~~~kI 688 (702)
T CHL00192 674 KTLTNKEIDRIQNEL 688 (702)
T ss_pred CCCCHHHHHHHHHHH
T ss_conf 996999999999999
No 59
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=90.13 E-value=0.3 Score=28.12 Aligned_cols=64 Identities=14% Similarity=0.321 Sum_probs=35.2
Q ss_pred EEECHHHHHHCCCC-CCEEEEEEEHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCCC---HHHHHHHHHHCC
Q ss_conf 54778999966879-978999987876235452024566313689888720018999668879---999999997111
Q gi|254780316|r 668 GEFHPNILDFFGLS-NPICGFEVYLDSIPISQKKRTKTKKVVHLSSLHPVKRDLAFIVDQHIP---AGTLVNIIKNVD 741 (805)
Q Consensus 668 G~ihP~i~~~~~i~-~~v~~~EI~ld~L~~~~~~~~~~~~~~~~s~fP~v~RDls~iv~~~v~---~~~I~~~i~~~~ 741 (805)
|.-+ .+...|+-+ .|..+|-+-+|.|......... +|...-|+-++...+.. +-+|.+.++++|
T Consensus 285 GRYD-~Lv~~fgg~~~PavGfaiGieRl~~~l~~~~~---------~~~~~~~~~v~~~~~~~~~~~~~ia~~LR~~g 352 (424)
T CHL00201 285 GRYD-SLVEQLGGPKTPAVGWAIGIERLLLIAKDNIL---------LPKPSIDFYIATKGNVAIKIAFSIQRFLHNQG 352 (424)
T ss_pred CCCH-HHHHHCCCCCCCEEEEEECHHHHHHHHHHCCC---------CCCCCCCEEEEECCHHHHHHHHHHHHHHHHCC
T ss_conf 7707-78997299999857788439999999973377---------77778858999778499999999999999889
No 60
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=89.97 E-value=0.27 Score=28.36 Aligned_cols=27 Identities=30% Similarity=0.436 Sum_probs=17.9
Q ss_pred HHHHHCC---CCCCEEEEEEEHHHHHHHHH
Q ss_conf 9999668---79978999987876235452
Q gi|254780316|r 673 NILDFFG---LSNPICGFEVYLDSIPISQK 699 (805)
Q Consensus 673 ~i~~~~~---i~~~v~~~EI~ld~L~~~~~ 699 (805)
.+.+.|+ ++.|..+|-+-+|.|...-.
T Consensus 301 ~Li~~fgg~~~~~PavGfa~Gierl~~~L~ 330 (421)
T PRK12420 301 NIIGAFRGDNMNYPTVGISFGLDVIYTALS 330 (421)
T ss_pred HHHHHHCCCCCCCCEEEEEEHHHHHHHHHH
T ss_conf 489881899899974799851999999985
No 61
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.
Probab=89.65 E-value=0.49 Score=26.58 Aligned_cols=122 Identities=11% Similarity=0.101 Sum_probs=70.6
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH----
Q ss_conf 3454334402567676765352334667655443457678998895467898878778774023210048257655----
Q gi|254780316|r 448 SWRQDVEEKADLVEEILRIYGVDQIKSEPLPLTQVEDKRNLSLQQSRTRYVKRVLASRAMMEVVNWSFISKEQSVL---- 523 (805)
Q Consensus 448 s~R~DI~~e~DLiEEIaRiyGYdnIp~~~l~~~~~~~~~~~~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~---- 523 (805)
.|=.+|....+|+| | | .+|-.+. -.+......+...+.+|+.+...||+||.+-.+++......
T Consensus 4 ~wy~~~~~~~~l~d-----~-~-pv~G~~~-----~lP~G~~i~~~l~~~~r~~~~~~G~~ev~~P~l~~~~~~~k~sgh 71 (261)
T cd00778 4 EWYTEVITKAELID-----Y-G-PVKGCMV-----FRPYGYAIWENIQKILDKEIKETGHENVYFPLLIPESELEKEKEH 71 (261)
T ss_pred HHHHHHHHHHCCCC-----C-C-CCCCEEE-----ECCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHCH
T ss_conf 99999999817722-----4-7-9983088-----863289999999999999999869969988332788999974281
Q ss_pred HH-HHHHHCCCCCC-C--CCCCCCCCCHHHCHHHHHHHHHCC-CCCCHHHHHHHCCCCCCCCC
Q ss_conf 20-00000002467-7--643210151221106776432101-58611345430244447775
Q gi|254780316|r 524 FG-GGQRELEILNP-I--SADMSNMRTSLLPGLLKATGRNVD-RAIADFAIFEVSHVYENDTP 581 (805)
Q Consensus 524 ~~-~~~~~i~l~NP-l--S~e~s~lR~SLlp~LL~~~~~N~~-r~~~~i~lFEiG~Vf~~~~~ 581 (805)
+. ..++...+... . .++.=.|||+-=|.+....+...+ ++.-.+++||+|.+|+.+..
T Consensus 72 ~~~y~~emf~v~~~g~~~~d~~y~LkPmne~~~~~i~~~~~~SYRdLPlrl~q~g~~~R~E~s 134 (261)
T cd00778 72 IEGFAPEVAWVTHGGLEELEEPLALRPTSETAIYPMFSKWIRSYRDLPLKINQWVNVFRWETK 134 (261)
T ss_pred HHCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHCCCEECCCCC
T ss_conf 430576533552168520135603478886999999973505402278255530422437788
No 62
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=88.97 E-value=0.21 Score=29.25 Aligned_cols=88 Identities=13% Similarity=0.190 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCHHHHHHHHHCCCCCCHHHHH
Q ss_conf 89546789887877877402321004825765520000000024677643210151221106776432101586113454
Q gi|254780316|r 491 QQSRTRYVKRVLASRAMMEVVNWSFISKEQSVLFGGGQRELEILNPISADMSNMRTSLLPGLLKATGRNVDRAIADFAIF 570 (805)
Q Consensus 491 ~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~i~l~NPlS~e~s~lR~SLlp~LL~~~~~N~~r~~~~i~lF 570 (805)
.+...+++++.+...||.|+.|-.|--.+... -...++..+...+-... =+|||-+.+++.+.++.++.+.....|+|
T Consensus 22 ~~~Ie~~~~~~f~~~Gy~eI~TP~~E~~e~~~-~~~~kemy~f~D~~gr~-l~LRPd~Ta~iaR~v~~~l~~~~~p~rl~ 99 (281)
T PRK12293 22 KRDIENVASEILYKEGFEEIVTPSFSYHQHLS-VADEKELLRFSDEKNHE-ISLRADSTVDVVRIITKRLGRSTEHKKWF 99 (281)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCCEEEEECCC-CCCCCEEEEEECCCCCE-EEECCCCCHHHHHHHHHCCCCCCCCEEEE
T ss_conf 99999999999998599485378568644346-65630179998799987-99778887899999996554468975799
Q ss_pred HHCCCCCCCC
Q ss_conf 3024444777
Q gi|254780316|r 571 EVSHVYENDT 580 (805)
Q Consensus 571 EiG~Vf~~~~ 580 (805)
=+|+||+...
T Consensus 100 Y~g~vFRye~ 109 (281)
T PRK12293 100 YIQPVFRYPT 109 (281)
T ss_pred EECCEEECCC
T ss_conf 8756353467
No 63
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=88.87 E-value=0.29 Score=28.23 Aligned_cols=33 Identities=12% Similarity=0.009 Sum_probs=19.2
Q ss_pred EEEEEEEEEECCCCCCCEEEEECCCCCEEEEECCCC
Q ss_conf 899999975657998708999759995798975483
Q gi|254780316|r 45 TIVKVLSVERNPDLDCAILRIDTGKHQEIQVVCGAP 80 (805)
Q Consensus 45 vvg~v~~~~~hP~adl~v~~Vd~g~~~~~~IvcgA~ 80 (805)
+.|.|..+..+-+ +....+..|++ ..||+|-.+
T Consensus 22 v~Grv~~~R~~Gk--l~Fi~LrD~tg-~~qiq~~~~ 54 (462)
T PRK03932 22 IRGWVRTKRDSGK--ISFLELNDGSC-FKQIQVVKN 54 (462)
T ss_pred EEEEEEEEECCCC--CEEEEEECCCC-CEEEEEEEC
T ss_conf 9897782781798--38999982898-789999967
No 64
>pfam00152 tRNA-synt_2 tRNA synthetases class II (D, K and N).
Probab=87.82 E-value=0.55 Score=26.19 Aligned_cols=115 Identities=17% Similarity=0.221 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 95467898878778774023210048257655200000000246776432101512211067764321015861134543
Q gi|254780316|r 492 QSRTRYVKRVLASRAMMEVVNWSFISKEQSVLFGGGQRELEILNPISADMSNMRTSLLPGLLKATGRNVDRAIADFAIFE 571 (805)
Q Consensus 492 ~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~i~l~NPlS~e~s~lR~SLlp~LL~~~~~N~~r~~~~i~lFE 571 (805)
....+.+|++|...||.||-|-.+++..-- ...++..+.+. ..+..+||+| |-|-.-.. +.-|.. ++||
T Consensus 26 s~i~~~iR~ff~~~~f~EV~TP~L~~~~~e----~~a~~F~~~~~-~~~~~yL~~S--pel~~k~l--l~~g~~--rVfe 94 (341)
T pfam00152 26 SKIIRAIREFLDERGFLEVETPILTKSTPE----GGARDFLVPKF-YAKEAYLPQS--PQLYKQLL--MVAGFD--RVFQ 94 (341)
T ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCCCCC----CCCCEEEECCC-CCCCEEECCC--HHHHHHHH--HHCCCC--CCEE
T ss_conf 999999999999889899879820055898----77766450267-8982340548--89999999--865887--6379
Q ss_pred HCCCCCCCCCCCCCEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 02444477754431000221035431012462023454433331468887531111111014
Q gi|254780316|r 572 VSHVYENDTPEGQKYMAAGIRKGSSGIEGSGRLWSDKSEERCRFVDLFDAKADALSVIEPFV 633 (805)
Q Consensus 572 iG~Vf~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~df~dlKg~v~~ll~~l~ 633 (805)
||++|+++......+..- +|.-.|.. ...|+.++...++.++..+.
T Consensus 95 i~~~FR~E~~~t~rH~~E--------------FtmlE~y~--a~~d~~d~m~~~E~li~~i~ 140 (341)
T pfam00152 95 IAPCFRDEDLRTDRHPPE--------------FTQLDLEM--SFVDYEDVMDLTEDLIKYVF 140 (341)
T ss_pred EECHHCCCCCCCCCCCHH--------------HHHHHHHH--HCCCHHHHHHHHHHHHHHHH
T ss_conf 723202798988655077--------------88776755--35999999999999999999
No 65
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=87.62 E-value=0.59 Score=26.02 Aligned_cols=26 Identities=19% Similarity=0.465 Sum_probs=14.4
Q ss_pred CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
Q ss_conf 3778788886401321039999989998608
Q gi|254780316|r 231 PNWMRQRLKAVGLRSISALVDITNYVSLDRG 261 (805)
Q Consensus 231 P~wl~~rL~~~Gir~inniVDitNyvmle~G 261 (805)
|.||= -|.|-.|++.++.-=.|...|
T Consensus 40 ~~wlP-----~G~~i~~~le~~ir~e~~~~G 65 (438)
T PRK12325 40 YSWLP-----LGLKVLKKIENIVREEQNRAG 65 (438)
T ss_pred CEECC-----CHHHHHHHHHHHHHHHHHHCC
T ss_conf 22160-----589999999999999999749
No 66
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=87.52 E-value=0.44 Score=26.89 Aligned_cols=79 Identities=18% Similarity=0.298 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCHHHHHHHHHCCCCCCHHHHH
Q ss_conf 89546789887877877402321004825765520000000024677643210151221106776432101586113454
Q gi|254780316|r 491 QQSRTRYVKRVLASRAMMEVVNWSFISKEQSVLFGGGQRELEILNPISADMSNMRTSLLPGLLKATGRNVDRAIADFAIF 570 (805)
Q Consensus 491 ~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~i~l~NPlS~e~s~lR~SLlp~LL~~~~~N~~r~~~~i~lF 570 (805)
.....+.+|++|...||.||-|-.|++..-- +..++..+ +-. ....+||+| |.|-+-+. --|.. ++|
T Consensus 27 Rs~i~~~iR~fl~~~gF~EVeTP~L~~~~~e----g~a~~f~~-~~~-~~~~yL~~S--pel~Kqll---i~G~~--rVf 93 (322)
T cd00776 27 RSEVLRAFREFLRENGFTEVHTPKITSTDTE----GGAELFKV-SYF-GKPAYLAQS--PQLYKEML---IAALE--RVY 93 (322)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCCCCCCCCC----CCCCCCCC-CCC-CCCEEECCC--HHHHHHHH---HCCCC--CEE
T ss_conf 9999999999999889999979840078898----65466762-105-876001548--58899997---53424--438
Q ss_pred HHCCCCCCCCCC
Q ss_conf 302444477754
Q gi|254780316|r 571 EVSHVYENDTPE 582 (805)
Q Consensus 571 EiG~Vf~~~~~~ 582 (805)
|||++|+++...
T Consensus 94 ei~~~FR~E~~~ 105 (322)
T cd00776 94 EIGPVFRAEKSN 105 (322)
T ss_pred EECCEEECCCCC
T ss_conf 872614079998
No 67
>PRK11342 mhpD 2-keto-4-pentenoate hydratase; Provisional
Probab=86.65 E-value=2.4 Score=21.68 Aligned_cols=23 Identities=30% Similarity=0.634 Sum_probs=10.2
Q ss_pred EEE-EEEECHHHHHHCCCCCCEEE
Q ss_conf 999-85477899996687997899
Q gi|254780316|r 664 LGY-FGEFHPNILDFFGLSNPICG 686 (805)
Q Consensus 664 iG~-iG~ihP~i~~~~~i~~~v~~ 686 (805)
+|| +|--+|.+.+.+++..|+|+
T Consensus 57 vG~KiG~Ts~~~q~~~gv~~P~~G 80 (262)
T PRK11342 57 VGRKVGLTHPKVQQQLGVDQPDFG 80 (262)
T ss_pred EEEEEECCCHHHHHHCCCCCCCEE
T ss_conf 899983389999997098998267
No 68
>TIGR02865 spore_II_E stage II sporulation protein E; InterPro: IPR014221 This entry contains the stage II sporulation protein E (SpoIIE), which is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation and it has phosphatase activity, located in the C-terminal region, which is required to activate sigma-F. All members of this entry are found in endospore-forming Gram-positive bacteria. A homologous protein, not a member of this entry, is found in the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis..
Probab=86.55 E-value=1.2 Score=23.85 Aligned_cols=96 Identities=21% Similarity=0.286 Sum_probs=49.5
Q ss_pred EEEEEEHHHHHHHHHCCCCCCCCCCCCCCCC-CEE--EEEEEECCCCCHHHHHHH-H---H-H--CCCCE--EEEEEEEE
Q ss_conf 9999878762354520245663136898887-200--189996688799999999-9---7-1--11003--57698987
Q gi|254780316|r 685 CGFEVYLDSIPISQKKRTKTKKVVHLSSLHP-VKR--DLAFIVDQHIPAGTLVNI-I---K-N--VDRLI--DDVTVFDV 752 (805)
Q Consensus 685 ~~~EI~ld~L~~~~~~~~~~~~~~~~s~fP~-v~R--Dls~iv~~~v~~~~I~~~-i---~-~--~~~ll--~~v~lfDv 752 (805)
-+.=+||..|.+.. ....|..+---|+ ++| ++..+-.++.|.+-+.+. + + + .|.++ -+=-+..-
T Consensus 662 ~FsTlDL~~iDL~~----g~~~F~KvGavpSFiKRG~~V~vI~~~~LPiG~~~~vd~e~~~~~L~~GD~ivm~SDGvLE~ 737 (794)
T TIGR02865 662 KFSTLDLSVIDLYT----GQAEFVKVGAVPSFIKRGAKVEVIRSSNLPIGILDEVDVELVRKKLKNGDLIVMVSDGVLEA 737 (794)
T ss_pred HHHHHHHHHHCCCC----CEEEEEEECCCCCEEEECCEEEEEEECCCCCCCCCCCCCCCEEEECCCCCEEEEECCCHHHC
T ss_conf 05776788744776----32789996161251666788999862789846545323430012337998799812313330
Q ss_pred EECCCCCCCCEEEEEEEEEECCCCCCCHHHHHHH
Q ss_conf 6367799884269999998477988899999999
Q gi|254780316|r 753 FQGKSLGEGKKSVAIQVLIQPLKDTFRDDDIRIL 786 (805)
Q Consensus 753 Y~g~~i~~gkkSla~rl~fqs~~kTLtd~EI~~i 786 (805)
++|++-.+||-..-+|+. ..+.+..=+||-+.
T Consensus 738 l~g~~~~e~k~~W~~~~l--~e~~~~~P~E~Ae~ 769 (794)
T TIGR02865 738 LEGEKEVEGKVLWLVRFL--KETDTNDPEEIAEY 769 (794)
T ss_pred CCCCHHHCCHHHHHHHHH--CCCCCCCHHHHHHH
T ss_conf 587300116288999996--13677895889999
No 69
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=86.36 E-value=0.64 Score=25.73 Aligned_cols=93 Identities=12% Similarity=0.095 Sum_probs=62.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH----HHHHHCCCCCCCCCCCCCCCCHHHCHHHHHHHHHCC
Q ss_conf 7899889546789887877877402321004825765520----000000024677643210151221106776432101
Q gi|254780316|r 486 RNLSLQQSRTRYVKRVLASRAMMEVVNWSFISKEQSVLFG----GGQRELEILNPISADMSNMRTSLLPGLLKATGRNVD 561 (805)
Q Consensus 486 ~~~~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~----~~~~~i~l~NPlS~e~s~lR~SLlp~LL~~~~~N~~ 561 (805)
+.....+.+.+.+|+.....||+||.|-.+.+.+.-+.-+ +.++...+. ...+.=+||+.--|+.....+.-.
T Consensus 28 ~G~~i~~~L~~~ir~~~~~~Gy~eV~tP~i~~~~Lw~~SGH~~~y~e~mf~~~--~~~~~~~LkPmnCp~h~~i~~~~~- 104 (298)
T cd00771 28 KGAIIRNELEDFLRELQRKRGYQEVETPIIYNKELWETSGHWDHYRENMFPFE--EEDEEYGLKPMNCPGHCLIFKSKP- 104 (298)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCCCCCCCCEEEEE--ECCCCEEEECCCCHHHHHHHHCCC-
T ss_conf 88999999999999999986998998861266556754776311368568888--625416885068688999986355-
Q ss_pred CCCC--HHHHHHHCCCCCCCCC
Q ss_conf 5861--1345430244447775
Q gi|254780316|r 562 RAIA--DFAIFEVSHVYENDTP 581 (805)
Q Consensus 562 r~~~--~i~lFEiG~Vf~~~~~ 581 (805)
|..+ .+|++|+|.||+.+.+
T Consensus 105 ~SYrdLPlR~~E~g~~~R~E~s 126 (298)
T cd00771 105 RSYRDLPLRLAEFGTVHRYEQS 126 (298)
T ss_pred CCHHHCCHHHHCCCCEECCCCC
T ss_conf 6734346765207505547677
No 70
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=86.22 E-value=0.82 Score=24.97 Aligned_cols=65 Identities=15% Similarity=0.358 Sum_probs=31.3
Q ss_pred EEECHHHHHHCC-CCCCEEEEEEEHHHHHHHHHCCCCCCCCCCCCCCC-CCEEEEEEE-ECCCC--CHHHHHHHHHHCC
Q ss_conf 547789999668-79978999987876235452024566313689888-720018999-66887--9999999997111
Q gi|254780316|r 668 GEFHPNILDFFG-LSNPICGFEVYLDSIPISQKKRTKTKKVVHLSSLH-PVKRDLAFI-VDQHI--PAGTLVNIIKNVD 741 (805)
Q Consensus 668 G~ihP~i~~~~~-i~~~v~~~EI~ld~L~~~~~~~~~~~~~~~~s~fP-~v~RDls~i-v~~~v--~~~~I~~~i~~~~ 741 (805)
|.-+. +.+.|+ -+.|..+|-+-++.|......... ..| ...-|+-++ ++++. .+-.+.+.+++++
T Consensus 293 GRYD~-Lv~~~gG~~~pavGFaiGveRl~~~l~~~~~--------~~~~~~~~~v~v~~~~~~~~~~a~~la~~LR~~g 362 (429)
T COG0124 293 GRYDG-LVEEFGGKPTPAVGFAIGVERLILALEEEGK--------EDPVETRVDVYVVPLGEDAEPEALKLAQKLRAAG 362 (429)
T ss_pred CCCHH-HHHHHCCCCCCCEEEEHHHHHHHHHHHHCCC--------CCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCC
T ss_conf 66158-9998489988713675179999999997188--------7776777888999848615999999999999759
No 71
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=86.15 E-value=0.92 Score=24.63 Aligned_cols=150 Identities=14% Similarity=0.084 Sum_probs=84.7
Q ss_pred CHHHHHHCCCCC-HHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 113333113458-7899999998402221034562366403454334402567676765352334667655443457678
Q gi|254780316|r 409 SEVKRLSGIDVP-IEDSLRILERLGFSVIGEYDKFEVSVPSWRQDVEEKADLVEEILRIYGVDQIKSEPLPLTQVEDKRN 487 (805)
Q Consensus 409 ~~i~~ilG~~i~-~~ei~~iL~~Lgf~v~~~~~~~~V~vPs~R~DI~~e~DLiEEIaRiyGYdnIp~~~l~~~~~~~~~~ 487 (805)
..+.|+-|+.++ .++....|+++.=--..+ +|. +++-.+.=.|....-|-...=.++.
T Consensus 149 ~~LqRIYG~af~~k~~L~~yl~~~eEakkRD----------HRk-----------lGkel~LF~f~~~~gpG~~~wlP~G 207 (576)
T PRK12305 149 KQLTRIYGTSWESKEELDKYLAILQERKERD----------HRK-----------IGKDLKLFTFSSLAGQGFPIWLENG 207 (576)
T ss_pred CEEEEEEEEEECCHHHHHHHHHHHHHHHHCC----------HHH-----------HHHHCCEEEECCCCCCCCEEECCCH
T ss_conf 1008999997179889999999999998657----------787-----------6421565872344688764674767
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH----HHHHHCCCCCCCCCCCCCCCCHHHCHHHHHHHHHCCCC
Q ss_conf 99889546789887877877402321004825765520----00000002467764321015122110677643210158
Q gi|254780316|r 488 LSLQQSRTRYVKRVLASRAMMEVVNWSFISKEQSVLFG----GGQRELEILNPISADMSNMRTSLLPGLLKATGRNVDRA 563 (805)
Q Consensus 488 ~~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~----~~~~~i~l~NPlS~e~s~lR~SLlp~LL~~~~~N~~r~ 563 (805)
....+.+.+.+|+.....||+||.|-.+.+.+.-+.-| +.++...... +..+.=.|+|.--|+.....+.-. |.
T Consensus 208 ~~i~~~le~~~r~~~~~~Gy~eV~TP~i~~~~Lw~~SGH~~~Y~e~Mf~~~~-~~~e~~~lKPMNCP~H~~if~~~~-rS 285 (576)
T PRK12305 208 MIIKNAIRKFILELDRKYGFDEVLTPHFGEKKLYKTSGHLDHYKDDMFKPLK-IENEELIPRPMTCPHHIILYSNEL-RS 285 (576)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCHHHHHHHCCCCEE-CCCCEEEECCCCCHHHHHHHHCCC-CC
T ss_conf 8999999999999999869989846421428899766646556642573063-156416535778632677764277-54
Q ss_pred CC--HHHHHHHCCCCCCCCC
Q ss_conf 61--1345430244447775
Q gi|254780316|r 564 IA--DFAIFEVSHVYENDTP 581 (805)
Q Consensus 564 ~~--~i~lFEiG~Vf~~~~~ 581 (805)
.+ .+|+||+|.||+.+.+
T Consensus 286 YRdLPlR~aEfg~~~R~E~S 305 (576)
T PRK12305 286 YRDLPIRLSEQSRLYRYEKS 305 (576)
T ss_pred HHHCCHHHHCCCCEECCCCC
T ss_conf 44324220004435447888
No 72
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=85.09 E-value=0.91 Score=24.66 Aligned_cols=112 Identities=17% Similarity=0.213 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH-HHHH-CCCCCCCCCCCCCCCCHHHCHHHHHHHHHCCCCCCHHHH
Q ss_conf 95467898878778774023210048257655200-0000-002467764321015122110677643210158611345
Q gi|254780316|r 492 QSRTRYVKRVLASRAMMEVVNWSFISKEQSVLFGG-GQRE-LEILNPISADMSNMRTSLLPGLLKATGRNVDRAIADFAI 569 (805)
Q Consensus 492 ~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~-~~~~-i~l~NPlS~e~s~lR~SLlp~LL~~~~~N~~r~~~~i~l 569 (805)
.+..+.+|++|...||.||-|--|.+-. ++ ...+ +.=.|.+..++ +||.| |.|-+-..- --|.. |+
T Consensus 188 s~ii~~iR~~l~~~gF~EVeTPil~~~~-----gGa~Arpf~t~~~~~~~~~-yL~qS--PQLykk~Lm--vgGfd--Rv 255 (505)
T PRK12445 188 SKILAAIRQFMVARGFMEVETPMMQVIP-----GGASARPFITHHNALDLDM-YLRIA--PELYLKRLV--VGGFE--RV 255 (505)
T ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCCC-----CCCCCCEEEECCCCCCCCE-EECCC--CHHHHHHHH--HCCCC--CE
T ss_conf 9999999999997793899788755545-----8766610330466788674-34169--399999998--57974--45
Q ss_pred HHHCCCCCCCCCCCCCEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 430244447775443100022103543101246202345443333146888753111111101
Q gi|254780316|r 570 FEVSHVYENDTPEGQKYMAAGIRKGSSGIEGSGRLWSDKSEERCRFVDLFDAKADALSVIEPF 632 (805)
Q Consensus 570 FEiG~Vf~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~df~dlKg~v~~ll~~l 632 (805)
||||++|+++... ..+.. .+|.-.|.. ...|+.|+...++.++..+
T Consensus 256 feI~r~FRnE~~~-~~H~P--------------EFT~lE~e~--af~d~~dvm~l~E~li~~i 301 (505)
T PRK12445 256 FEINRNFRNEGIS-VRHNP--------------EFTMMELYM--AYADYHDLIELTESLFRTL 301 (505)
T ss_pred EEHHHHHHCCCCC-CCCCH--------------HHHHHHHHH--HCCCHHHHHHHHHHHHHHH
T ss_conf 7627876078888-66544--------------454356876--3278989999999999999
No 73
>TIGR01393 lepA GTP-binding protein LepA; InterPro: IPR006297 LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function of the proteins in this family are unknown. ; GO: 0005525 GTP binding.
Probab=84.74 E-value=2.9 Score=21.05 Aligned_cols=158 Identities=16% Similarity=0.214 Sum_probs=87.7
Q ss_pred CHHHCHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 12211067764321015861134543024444777544310002210354310124620234544333314688875311
Q gi|254780316|r 546 TSLLPGLLKATGRNVDRAIADFAIFEVSHVYENDTPEGQKYMAAGIRKGSSGIEGSGRLWSDKSEERCRFVDLFDAKADA 625 (805)
Q Consensus 546 ~SLlp~LL~~~~~N~~r~~~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~df~dlKg~v 625 (805)
++|-.|=.--+.-|++. ..+++ +|++-+.-...-.+.+.++-.-.+..+ +|.. . -..-||-+||-.+
T Consensus 250 ~~L~aGeVGy~~AgIK~-v~D~~---VGDTiT~~~~Pa~eplpGF~~~KP~VF--aGlY-P------id~~~Ye~LrdAL 316 (598)
T TIGR01393 250 QELSAGEVGYIIAGIKD-VSDVK---VGDTITSVKNPAKEPLPGFKEVKPMVF--AGLY-P------IDTEDYEDLRDAL 316 (598)
T ss_pred CCEECCCEEEEEEEEEE-CCCEE---CCCEEECCCCCCCCCCCCCCCCCCEEE--ECCC-C------CCCHHHHHHHHHH
T ss_conf 62001630599986531-04112---054452567873767888612576586--0125-8------8803468999997
Q ss_pred HHHHHHCCCCCCEEEECCCCCCCCCCCEEEEEECCEEEEEEEEEECHHHHHH-----CCCC----CCEEEEEEEHHHHHH
Q ss_conf 1111101453330330588656789816999987929999985477899996-----6879----978999987876235
Q gi|254780316|r 626 LSVIEPFVSLDSLRFESGAPSWYHPGRSGIIKTSAEIVLGYFGEFHPNILDF-----FGLS----NPICGFEVYLDSIPI 696 (805)
Q Consensus 626 ~~ll~~l~~~~~~~~~~~~~~~~hPgrsa~I~~~gk~iiG~iG~ihP~i~~~-----~~i~----~~v~~~EI~ld~L~~ 696 (805)
+.|- ..-..++|++.+...+ | -|-.+ ||+|.||=+|.++ |||. -|.+.-++.+.
T Consensus 317 eKL~---LNDAsL~yE~E~S~AL--G-------FGFRC-GFLGLLHmEiiqERLeREFnldlI~TAP~V~Y~V~~~---- 379 (598)
T TIGR01393 317 EKLK---LNDASLTYEPESSPAL--G-------FGFRC-GFLGLLHMEIIQERLEREFNLDLITTAPSVVYKVYLT---- 379 (598)
T ss_pred HHHH---HHHHHHHCCCCCCCCC--C-------CCEEE-CCCCCHHHHHHHHHHHHHCCCEEEEECCCEEEEEEEE----
T ss_conf 5554---4025421022363003--7-------40433-2666336899987654430870687278159999970----
Q ss_pred HHHCCCCCCCCCCCCCCCCCEE---------EEEEEECCCCCHHHHHHHHH
Q ss_conf 4520245663136898887200---------18999668879999999997
Q gi|254780316|r 697 SQKKRTKTKKVVHLSSLHPVKR---------DLAFIVDQHIPAGTLVNIIK 738 (805)
Q Consensus 697 ~~~~~~~~~~~~~~s~fP~v~R---------Dls~iv~~~v~~~~I~~~i~ 738 (805)
.........||.||.-.. .+++++|++. .+.|++.+.
T Consensus 380 ----~G~~~~v~nP~~~P~~~~I~~v~EPyv~~~IitP~ey-~G~iM~LC~ 425 (598)
T TIGR01393 380 ----DGEVIEVDNPSDLPDPNKIEHVEEPYVKATIITPSEY-LGAIMELCQ 425 (598)
T ss_pred ----CCCEEEEECCHHCCCCCCCCEEECCEEEEEEECCCCH-HHHHHHHHH
T ss_conf ----7818997183006850157778447499994358301-246888763
No 74
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=84.20 E-value=0.77 Score=25.18 Aligned_cols=129 Identities=10% Similarity=0.043 Sum_probs=71.0
Q ss_pred ECCCCCCCCCHHHHHHHHHHHCCCCCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf 4034543344025676767653523346676-554434576789988954678988787787740232100482576552
Q gi|254780316|r 446 VPSWRQDVEEKADLVEEILRIYGVDQIKSEP-LPLTQVEDKRNLSLQQSRTRYVKRVLASRAMMEVVNWSFISKEQSVLF 524 (805)
Q Consensus 446 vPs~R~DI~~e~DLiEEIaRiyGYdnIp~~~-l~~~~~~~~~~~~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~ 524 (805)
+|.+-.....-.+|.|+.. ++-|++-...+ ..+.. .........+.+.+..++.+...||.|+.|-.+++.+....-
T Consensus 11 ~~~f~f~~rdH~~Lg~~L~-L~dfe~~akvsG~rf~~-l~g~ga~Le~AL~~f~~d~~~~~Gy~eV~tP~iv~~~~~~~s 88 (297)
T cd00770 11 PRVFDFKPKDHVELGEKLD-ILDFERGAKVSGSRFYY-LKGDGALLERALINFALDFLTKRGFTPVIPPFLVRKEVMEGT 88 (297)
T ss_pred CCCCCCCCCCHHHHHHHCC-CEECCCCCCCCCCEEEE-ECCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHH
T ss_conf 8999999889999999778-81023224689877799-888899999999999999999879989988530138998543
Q ss_pred HH----HHHHCCCCCCCCCCCCCCCCHHHCHHHHHHHHHCCCCCC--HHHHHHHCCCCCCCCC
Q ss_conf 00----000000246776432101512211067764321015861--1345430244447775
Q gi|254780316|r 525 GG----GQRELEILNPISADMSNMRTSLLPGLLKATGRNVDRAIA--DFAIFEVSHVYENDTP 581 (805)
Q Consensus 525 ~~----~~~~i~l~NPlS~e~s~lR~SLlp~LL~~~~~N~~r~~~--~i~lFEiG~Vf~~~~~ 581 (805)
+. .++..++.+ +.-+|.++-=++|.. +-.|.-+... .+|++++|++|+.+..
T Consensus 89 G~~~~~~e~~y~i~~----~~~~Li~tae~~l~~-~~~~~~~~~~dLPlr~~~~s~cfR~Eag 146 (297)
T cd00770 89 GQLPKFDEQLYKVEG----EDLYLIATAEVPLAA-LHRDEILEEEELPLKYAGYSPCFRKEAG 146 (297)
T ss_pred CCCCCCHHHHHCCCC----HHHHHHHCCCCCEEE-EEEEEECCHHHCCCCEEECCCHHHHCCC
T ss_conf 578763565210355----055554405666223-4420031775588650224634132037
No 75
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=83.34 E-value=1.5 Score=23.19 Aligned_cols=34 Identities=18% Similarity=0.022 Sum_probs=22.7
Q ss_pred EEEEEEEEEECCCCCCCEEEEECCCCCEEEEECCCCC
Q ss_conf 8999999756579987089997599957989754834
Q gi|254780316|r 45 TIVKVLSVERNPDLDCAILRIDTGKHQEIQVVCGAPN 81 (805)
Q Consensus 45 vvg~v~~~~~hP~adl~v~~Vd~g~~~~~~IvcgA~N 81 (805)
+-|.|.++..|- .+....+..+.+ .+|||+-..+
T Consensus 21 v~G~v~~~R~~G--kl~Fi~LrD~~g-~iQ~~~~~~~ 54 (434)
T PRK05159 21 LAGWVHEIRDLG--GIKFLLLRDRTG-IIQVVVPKKK 54 (434)
T ss_pred EEEEEEEEECCC--CCEEEEEEECCC-CEEEEEECCC
T ss_conf 989887288179--859999996980-2899997998
No 76
>PRK08526 threonine dehydratase; Provisional
Probab=82.89 E-value=1.5 Score=23.12 Aligned_cols=297 Identities=14% Similarity=0.114 Sum_probs=148.5
Q ss_pred CCCCCCHHHHHHHCCCCCCCCCEEEECCCCCCC-CCHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 865054541188769985477507816888888-4558870888559998708785766555789998776411566665
Q gi|254780316|r 111 GIESTGMMCSEKELMLSDDSASIMELPIDAPVG-GRLSDYLELSDPIIDVSLTPNRSDCIGVRGIALDLVAAGLGKLKEI 189 (805)
Q Consensus 111 Gv~S~GMlCS~~ELgl~~~~~gI~~l~~~~~~G-~~~~~~l~l~D~i~ei~iTpNR~D~ls~~GiARElaa~~~~~l~~~ 189 (805)
|-..+|+-++++.||+. ..++.|+.+|.. .+..+.+| -.++-.. +|-.|+ +-.|++++.-.+..+-+|
T Consensus 77 GNHaqgvA~aa~~lgi~----a~IvmP~~ap~~Kv~~~r~~G--A~Vil~g--~~~~ea---~~~A~~~a~~~g~~~ihp 145 (403)
T PRK08526 77 GNHAQGVAISAKHFGIK----AVIVMPESTPLLKVSGTKALG--AEVILKG--DNFDEA---YAFALEYAKENNLTFIHP 145 (403)
T ss_pred CHHHHHHHHHHHHHCCC----EEEEECCCCCHHHHHHHHHCC--CEEEEEC--CCHHHH---HHHHHHHHHHHCCCCCCC
T ss_conf 62899999999970998----899956668699999998269--8899978--985899---999999998604305483
Q ss_pred CCCCCCC---CCCCCCEEEEEEE--CCCHHHHHHHCCCCCCCCCCCCHHHHHH---HHHHCCCCCHHHHHHHHHHHHHHC
Q ss_conf 5456677---7777741589840--7311123320112322455663778788---886401321039999989998608
Q gi|254780316|r 190 NISCPLS---SESIPLEIKFDLD--DSSLCKGFAMCCVKGVRNNVAPNWMRQR---LKAVGLRSISALVDITNYVSLDRG 261 (805)
Q Consensus 190 ~~~~~~~---~~~~~~~i~v~i~--~~~~c~~y~~~~i~~v~~~~SP~wl~~r---L~~~Gir~inniVDitNyvmle~G 261 (805)
+..+.. ......++--... |.-.+|.=.|-.+.|+- .|++.. ..-+|+-|.+.- +-|-.+..|
T Consensus 146 -fdd~~vIaGqGTiglEileq~~d~D~vvvpvGGGGLisGia-----~a~K~~~P~ikViGVEpe~a~---~m~~Sl~~g 216 (403)
T PRK08526 146 -FEDEEVMAGQGTIALEMLDEISDLDMIVVPVGGGGLISGIA-----SAAKQINPNIKIIGVGAKGAP---AMKESFHAK 216 (403)
T ss_pred -CCCHHHHCCCCCHHHHHHHHCCCCCEEEECCCCCCHHHHHH-----HHHHHHCCCCCEEEECCCCCH---HHHHHHHCC
T ss_conf -57865762532389999975568998998588861689999-----999862998838996647876---899998769
Q ss_pred CCEEEECCCCCCCEEEEEECCCCCCHHHH----------HHHCC-----CCCCCCEEEECCCCCCCCHHHCCCCCCCCCC
Q ss_conf 70000010223332688623554311455----------42011-----2454320000256763100111355312013
Q gi|254780316|r 262 YPSHVFDASRISDVLTVRRACSGEKILAL----------DNQEY-----DLSPDNVVIASDGRIQSIAGIIGGKHAGCDD 326 (805)
Q Consensus 262 qPlHafD~dki~~~i~vr~a~~~E~~~~L----------d~~e~-----~L~~~~lvI~d~~~~ialaGImGg~~s~v~~ 326 (805)
+|...-..+.+.+.+-++...+ .+|-.+ ++.+. .|-+..=+|+.+..++++|+++.+.......
T Consensus 217 ~~v~~~~~~tiaDGlav~~~g~-~tf~i~~~~vD~iv~V~e~eI~~A~~~l~e~~k~vvEpaGA~~lAAll~~~~~~~~g 295 (403)
T PRK08526 217 KIKNSKSVRTIADGIAVRDASP-ITLAIILECVDDFVQVDDEEIANAILFLLEKQKIVVEGAGAAGVAALLHQKINLQKG 295 (403)
T ss_pred CCEECCCCCCEECCCCCCCCCH-HHHHHHHHCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCC
T ss_conf 9453488782403423576662-569999970896799799999999999998566442574379999997276201169
Q ss_pred CCCEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCEEC
Q ss_conf 67269999715787888778876165401554413455301358899988875212334555652587413554310000
Q gi|254780316|r 327 NTTDVLVEVALWDPINIARSGKNLGIITDSRYRFERGVDLQGMIPVLKHIVSLILSLCGGTASDICIARNITYKPRKIVF 406 (805)
Q Consensus 327 ~T~~illEsA~F~p~~Ir~tar~l~l~TdaS~RfERgvd~~~~~~al~r~~~Li~e~~gg~~~~~~~~~~~~~~~~~I~l 406 (805)
.+--++|=-++.|+..+++-..|--....-.+||.=-+ .-..-+|.+++.+|.+. ++.+..+........ +
T Consensus 296 k~Vv~ilsGGNiD~~~l~~ii~r~l~~~gr~~~~~v~~--~d~pG~l~~~~~~i~~~-~~ni~~~~~~r~~~~------~ 366 (403)
T PRK08526 296 AKIGVVLSGGNIDVQMLNVIIEKGLIKSYRKMKLHVTL--VDKPGALMGLTDILKIA-NANIVKIDYDRFSTK------L 366 (403)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEEC--CCCCCHHHHHHHHHCCC-CCCEEEEEEEECCCC------C
T ss_conf 97999971588898899999999888559989999986--88996799999997258-995799998862577------8
Q ss_pred CCCHHHHHHCCCCC----HHHHHHHHHHHHHHHHC
Q ss_conf 43113333113458----78999999984022210
Q gi|254780316|r 407 MNSEVKRLSGIDVP----IEDSLRILERLGFSVIG 437 (805)
Q Consensus 407 ~~~~i~~ilG~~i~----~~ei~~iL~~Lgf~v~~ 437 (805)
+.....=.++++.. .+++.+.|+.-||.+..
T Consensus 367 ~~~~~~v~~~~Et~~~~h~~~l~~~l~~~G~~~~~ 401 (403)
T PRK08526 367 DYGDANISITLETKGKEHQEEIRKILTEKGFNFYE 401 (403)
T ss_pred CCCCEEEEEEEEECCHHHHHHHHHHHHHCCCCEEE
T ss_conf 87736999999949999999999999987998784
No 77
>PRK12304 thrS threonyl-tRNA synthetase; Reviewed
Probab=82.33 E-value=2.4 Score=21.64 Aligned_cols=146 Identities=14% Similarity=0.132 Sum_probs=86.2
Q ss_pred HHHHHHCCCCC-HHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCC-C-CCCCCCCCCCCCCC
Q ss_conf 13333113458-789999999840222103456236640345433440256767676535233-4-66765544345767
Q gi|254780316|r 410 EVKRLSGIDVP-IEDSLRILERLGFSVIGEYDKFEVSVPSWRQDVEEKADLVEEILRIYGVDQ-I-KSEPLPLTQVEDKR 486 (805)
Q Consensus 410 ~i~~ilG~~i~-~~ei~~iL~~Lgf~v~~~~~~~~V~vPs~R~DI~~e~DLiEEIaRiyGYdn-I-p~~~l~~~~~~~~~ 486 (805)
.+.|+-|+.++ +++....|+++.=--+.+ +|. |-.+-| ++-++. + |..| -. .++
T Consensus 181 ~LqRIYG~af~~k~~L~~~l~~~eEakkRD----------HRk-lGkel~-------LF~f~~~~g~G~~----~w-lP~ 237 (604)
T PRK12304 181 MLTRIYGIAFADKESLKDYLFIIEEAKKRD----------HRK-LGVEMK-------LFTFDDEIGAGLP----IW-LPK 237 (604)
T ss_pred CEEEEEEEECCCHHHHHHHHHHHHHHHHCC----------HHH-HHHHCC-------CEECCCCCCCCCE----EE-CCC
T ss_conf 038999984199999999999999998667----------888-877455-------1562554588753----68-377
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH----HHHHHCCCCCCCCCCCCCCCCHHHCHHHHHHHHHCCC
Q ss_conf 899889546789887877877402321004825765520----0000000246776432101512211067764321015
Q gi|254780316|r 487 NLSLQQSRTRYVKRVLASRAMMEVVNWSFISKEQSVLFG----GGQRELEILNPISADMSNMRTSLLPGLLKATGRNVDR 562 (805)
Q Consensus 487 ~~~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~----~~~~~i~l~NPlS~e~s~lR~SLlp~LL~~~~~N~~r 562 (805)
.....+.+.+.+|+.....||+||.|-.+.+.+.-+.-| +.++... . -+..+.=.|+|.--|+.....+... |
T Consensus 238 G~~i~~~le~~~r~~~~~~Gy~eV~TP~i~~~~Lw~~SGH~~~Y~e~Mf~-~-~~d~~~y~lKPMNCP~H~~if~~~~-r 314 (604)
T PRK12304 238 GARLRSKLEHLLYKAHRLRGYEPVRGPEILKSDVWKISGHYANYKENMYF-T-TIDEQEYGIKPMNCVGHIKVYQSDL-R 314 (604)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHCCCHHHHHCCCCCE-E-ECCCCEEECCCCCCHHHHHHHHCCC-C
T ss_conf 54999999999999999829968038654558887305515321057644-5-0577433036779574999986277-4
Q ss_pred CCC--HHHHHHHCCCCCCCCC
Q ss_conf 861--1345430244447775
Q gi|254780316|r 563 AIA--DFAIFEVSHVYENDTP 581 (805)
Q Consensus 563 ~~~--~i~lFEiG~Vf~~~~~ 581 (805)
..+ .+|++|+|.||+.+.+
T Consensus 315 SYRdLPlR~aEfg~~hR~E~S 335 (604)
T PRK12304 315 SYRDLPLKFFEYGVVHRHEKS 335 (604)
T ss_pred CHHHCCHHHHHCCCEECCCCC
T ss_conf 444355554543532026777
No 78
>PRK06382 threonine dehydratase; Provisional
Probab=79.68 E-value=2.5 Score=21.57 Aligned_cols=296 Identities=15% Similarity=0.101 Sum_probs=142.6
Q ss_pred CCCCCCCHHHHHHHCCCCCCCCCEEEECCCCCCCC-CHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 58650545411887699854775078168888884-55887088855999870878576655578999877641156666
Q gi|254780316|r 110 RGIESTGMMCSEKELMLSDDSASIMELPIDAPVGG-RLSDYLELSDPIIDVSLTPNRSDCIGVRGIALDLVAAGLGKLKE 188 (805)
Q Consensus 110 rGv~S~GMlCS~~ELgl~~~~~gI~~l~~~~~~G~-~~~~~l~l~D~i~ei~iTpNR~D~ls~~GiARElaa~~~~~l~~ 188 (805)
.|...+|+-++++.||+.- .+++|+.+|... +..+.+| -.++-.. .+-.|+ +-.|++++.-.+..+-+
T Consensus 75 aGNHaqgvA~aa~~lgi~a----~IvmP~~tp~~Kv~~~r~~G--A~Vil~g--~~~dea---~~~A~~~a~e~g~~~Ih 143 (400)
T PRK06382 75 AGNHAQGVAYAASINGIDA----KIVMPEYTIPQKVNAVEAYG--AHVILTG--RDYDEA---HRYADKIAMDENRTFIE 143 (400)
T ss_pred CCCHHHHHHHHHHHHCCCE----EEEECCCCCHHHHHHHHHCC--CEEEEEC--CCCHHH---HHHHHHHHHHHCCEECC
T ss_conf 9946999999999839988----99917889999999998559--7899977--764699---99999999983976258
Q ss_pred CCCCCCCCCC---CCCCEEEEEEE--CCCHHHHHHHCCCCCCCCCCCCHHHHHH---HHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 5545667777---77741589840--7311123320112322455663778788---88640132103999998999860
Q gi|254780316|r 189 INISCPLSSE---SIPLEIKFDLD--DSSLCKGFAMCCVKGVRNNVAPNWMRQR---LKAVGLRSISALVDITNYVSLDR 260 (805)
Q Consensus 189 ~~~~~~~~~~---~~~~~i~v~i~--~~~~c~~y~~~~i~~v~~~~SP~wl~~r---L~~~Gir~inniVDitNyvmle~ 260 (805)
| +..+.... ....++--... |.-.+|.=.|-.+.|+.. +++.. ..-+|+-|.+. -+-|--+.-
T Consensus 144 p-fdd~~vIaGqGTiglEIleq~pd~D~vvvpvGGGGLisGia~-----a~K~~~P~ikViGVEpe~a---~~~~~sl~~ 214 (400)
T PRK06382 144 A-FNDRWVISGQGTIGLEIMEDLPDLDQIIVPVGGGGLISGIAL-----AAKHINPNVKIIGIESELS---DSMKASLRE 214 (400)
T ss_pred C-CCCHHHHHCCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHH-----HHHHHCCCCEEEEECCCCC---HHHHHHHHC
T ss_conf 8-898468707305999999866899989993687158899999-----9998599975999796898---789999877
Q ss_pred CCCEEEECCCCCCCEEEEEECCCCCCHHHH----------HHHC-----CCCCCCCEEEECCCCCCCCHHHCCCCCCCCC
Q ss_conf 870000010223332688623554311455----------4201-----1245432000025676310011135531201
Q gi|254780316|r 261 GYPSHVFDASRISDVLTVRRACSGEKILAL----------DNQE-----YDLSPDNVVIASDGRIQSIAGIIGGKHAGCD 325 (805)
Q Consensus 261 GqPlHafD~dki~~~i~vr~a~~~E~~~~L----------d~~e-----~~L~~~~lvI~d~~~~ialaGImGg~~s~v~ 325 (805)
|+|...-..+.+.+.+-++...+ .+|-.+ ++.+ +.|-+..=+++.+..++++|++|-+.. .+.
T Consensus 215 g~~v~~~~~~tiaDGiav~~~G~-~tf~i~~~~vD~vv~V~e~eI~~A~~~l~e~~k~vvEpaGA~~lAAll~~~~-~~~ 292 (400)
T PRK06382 215 GKIVAHTSGVSICDGISVKYPGD-LTFDIAKNYVDDIVTVTEESVSKAIYKLFEREKIVAEPSGAVGLAAIMEGKV-DVK 292 (400)
T ss_pred CCCCCCCCCCEEECCCCCCCCCC-CCHHHHHHCCCCEEEECHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHCCH-HHC
T ss_conf 99620588773642403565551-1599998408977998999999999999996395882679999999984906-537
Q ss_pred CCCCEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCEE
Q ss_conf 36726999971578788877887616540155441345530135889998887521233455565258741355431000
Q gi|254780316|r 326 DNTTDVLVEVALWDPINIARSGKNLGIITDSRYRFERGVDLQGMIPVLKHIVSLILSLCGGTASDICIARNITYKPRKIV 405 (805)
Q Consensus 326 ~~T~~illEsA~F~p~~Ir~tar~l~l~TdaS~RfERgvd~~~~~~al~r~~~Li~e~~gg~~~~~~~~~~~~~~~~~I~ 405 (805)
..+.-++|=-++.|+...++-..|--....-..||.=-+ .-..-+|.+++++|.+. ++.+..+..+.... .
T Consensus 293 gk~Vv~vlsGGNiD~~~l~~ii~r~l~~~gr~~~~~v~i--~d~pG~L~~~~~~i~~~-~~ni~~i~~~r~~~------~ 363 (400)
T PRK06382 293 GKKVAIVVSGGNINPLLMSKIIYKELENLGQLVRIECNI--PDRPGNLYRIANAIASN-GGNIYHAEVDNLRK------E 363 (400)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEEC--CCCCCHHHHHHHHHHCC-CCCEEEEEEEEECC------C
T ss_conf 984999963788797899999999888639979999986--88997799999997068-99579999876025------5
Q ss_pred CCCCHHHHHHCCCCC----HHHHHHHHHHHHHHHH
Q ss_conf 043113333113458----7899999998402221
Q gi|254780316|r 406 FMNSEVKRLSGIDVP----IEDSLRILERLGFSVI 436 (805)
Q Consensus 406 l~~~~i~~ilG~~i~----~~ei~~iL~~Lgf~v~ 436 (805)
++.....=.++++.. .+++.+-|+..||+++
T Consensus 364 ~~~~~~~v~~~iEt~~~~h~~~i~~~l~~~G~~~~ 398 (400)
T PRK06382 364 TPPGFQSVTFTVNVRGQDHLDRILNALREMGYKFN 398 (400)
T ss_pred CCCCEEEEEEEEEECCHHHHHHHHHHHHHCCCEEE
T ss_conf 78762689999980999999999999998789683
No 79
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=79.10 E-value=1.5 Score=23.10 Aligned_cols=76 Identities=18% Similarity=0.268 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCH---HHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCHHHHHHHHHCCCCCCHHH
Q ss_conf 954678988787787740232100482---57655200000000246776432101512211067764321015861134
Q gi|254780316|r 492 QSRTRYVKRVLASRAMMEVVNWSFISK---EQSVLFGGGQRELEILNPISADMSNMRTSLLPGLLKATGRNVDRAIADFA 568 (805)
Q Consensus 492 ~~~~~~ir~~L~~~Gf~Ev~tysl~s~---~~~~~~~~~~~~i~l~NPlS~e~s~lR~SLlp~LL~~~~~N~~r~~~~i~ 568 (805)
.+..+.+|++|...||.|+-|-.|... +.+. ..+.=.|-+..++- ||.| |.|....-- --|.. |
T Consensus 780 S~Vi~aiR~~L~~~GFlEVETPiLq~~~GGA~AR------PFlThsna~d~~~Y-LriA--PELflKRLm--VGGfe--R 846 (1099)
T PRK02983 780 SAVLRAVRETLVAKGFLEVETPILQQIHGGANAR------PFLTHINAYDLDLY-LRIA--PELYLKRLC--VGGVE--R 846 (1099)
T ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCC------CCCCCCCCCCCCCE-EECC--HHHHHHHHH--HCCCC--C
T ss_conf 9999999999987898895575467788875678------53010336786614-5148--089999998--64863--1
Q ss_pred HHHHCCCCCCCC
Q ss_conf 543024444777
Q gi|254780316|r 569 IFEVSHVYENDT 580 (805)
Q Consensus 569 lFEiG~Vf~~~~ 580 (805)
+||||++|.++.
T Consensus 847 VFEI~RcFRNEg 858 (1099)
T PRK02983 847 VFELGRAFRNEG 858 (1099)
T ss_pred CEEECCCCCCCC
T ss_conf 134325446799
No 80
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=78.00 E-value=2.9 Score=21.05 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 5467898878778774023210048
Q gi|254780316|r 493 SRTRYVKRVLASRAMMEVVNWSFIS 517 (805)
Q Consensus 493 ~~~~~ir~~L~~~Gf~Ev~tysl~s 517 (805)
+..+.+|++|...||.|+-|=.+++
T Consensus 13 ~i~~~iR~ff~~~gF~Ev~TPiL~~ 37 (329)
T cd00775 13 KIISYIRKFLDDRGFLEVETPMLQP 37 (329)
T ss_pred HHHHHHHHHHHHCCCEEEECCCCCC
T ss_conf 9999999999988988997986556
No 81
>PRK03772 threonyl-tRNA synthetase; Validated
Probab=76.74 E-value=2.5 Score=21.53 Aligned_cols=239 Identities=13% Similarity=0.104 Sum_probs=117.9
Q ss_pred HHHHHHCCCCCH-HHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCCC
Q ss_conf 133331134587-899999998402221034562366403454334402567676765352334-667655443457678
Q gi|254780316|r 410 EVKRLSGIDVPI-EDSLRILERLGFSVIGEYDKFEVSVPSWRQDVEEKADLVEEILRIYGVDQI-KSEPLPLTQVEDKRN 487 (805)
Q Consensus 410 ~i~~ilG~~i~~-~ei~~iL~~Lgf~v~~~~~~~~V~vPs~R~DI~~e~DLiEEIaRiyGYdnI-p~~~l~~~~~~~~~~ 487 (805)
.+.|+-|+.++. ++....|+++.=--..+ +|. |-.+ .-++-++.. |.. +-. .++.
T Consensus 214 ~LqRIYG~af~~k~~L~~~l~~~eEakkRD----------HRk-lGke-------l~LF~f~~~~pG~----~fw-lP~G 270 (642)
T PRK03772 214 MLQRIYGTAWADKKALNAYLQRLEEAAKRD----------HRK-IGKQ-------LDLYHMQEEAPGM----VFW-HNDG 270 (642)
T ss_pred HHEEEEEEECCCHHHHHHHHHHHHHHHHCC----------HHH-HHHH-------CCCEEECCCCCCC----EEE-CCCH
T ss_conf 007999986189899999999999998658----------888-8775-------2204754658876----366-5858
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH----HHHHHCCCCCCCCCCCCCCCCHHHCHHHHHHHHHCCCC
Q ss_conf 99889546789887877877402321004825765520----00000002467764321015122110677643210158
Q gi|254780316|r 488 LSLQQSRTRYVKRVLASRAMMEVVNWSFISKEQSVLFG----GGQRELEILNPISADMSNMRTSLLPGLLKATGRNVDRA 563 (805)
Q Consensus 488 ~~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~----~~~~~i~l~NPlS~e~s~lR~SLlp~LL~~~~~N~~r~ 563 (805)
....+.+.+.+|+.....||+||.|-.+.+.+.-+.-+ +.++...+. ...+.=.|||.--|+.....+... |.
T Consensus 271 ~~i~~~le~~~r~~~~~~Gy~eV~TP~i~~~~Lw~~SGH~~~Y~e~Mf~~~--~e~~ey~lKPMNCP~H~~iy~~~~-rS 347 (642)
T PRK03772 271 WTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYADAMFTTS--SENREYAIKPMNCPGHVQIFNQGL-KS 347 (642)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCHHCCHHHHHHCCHHHHHHCCCCCCC--CCHHHHCCCCCCCHHHHHHHHCCC-CC
T ss_conf 899999999999999986985985543213778873444766410342234--201443046778734889986166-43
Q ss_pred CC--HHHHHHHCCCCCCCCCCCCCEEHHHHC---------------------------------CCCCCCCCCCCCCCC-
Q ss_conf 61--134543024444777544310002210---------------------------------354310124620234-
Q gi|254780316|r 564 IA--DFAIFEVSHVYENDTPEGQKYMAAGIR---------------------------------KGSSGIEGSGRLWSD- 607 (805)
Q Consensus 564 ~~--~i~lFEiG~Vf~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~g~~~~~- 607 (805)
.. .+|++|.|.||+.+.++. +.|+. ....++....-..+.
T Consensus 348 YRdLPlR~aEfg~~~R~E~SG~----L~GL~RVR~FtqdDaHIFC~~dQi~~Ei~~~l~~~~~vy~~fGf~~~~~~LStr 423 (642)
T PRK03772 348 YRDLPLRMAEFGSCHRNEPSGS----LHGLMRVRGFTQDDAHIFCTEEQIRDEVNSCIKMVYDMYSTFGFEKIVVKLSTR 423 (642)
T ss_pred HHHCCHHHHHHHHHHCCCCCCC----CCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 4436545554113431666655----347456889987884355378999999999999999999973986389996268
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCEEEEEE--CCEEEEEEEEEECHHHHHHCCCC
Q ss_conf 544333314688875311111110145333033058865678981699998--79299999854778999966879
Q gi|254780316|r 608 KSEERCRFVDLFDAKADALSVIEPFVSLDSLRFESGAPSWYHPGRSGIIKT--SAEIVLGYFGEFHPNILDFFGLS 681 (805)
Q Consensus 608 ~~~~~~~~~df~dlKg~v~~ll~~l~~~~~~~~~~~~~~~~hPgrsa~I~~--~gk~iiG~iG~ihP~i~~~~~i~ 681 (805)
....-.....|-.+-+.+...++..+. .+...+.+..+|=|.---.+.. +.+.-+|.+ +++-.+-++|++.
T Consensus 424 pek~~G~~e~W~~AE~~L~~aL~~~g~--~y~~~~GegAFYGPKID~~v~DalgR~wq~~Ti-QlDF~lP~RF~l~ 496 (642)
T PRK03772 424 PEKRIGSDEMWDRAEADLAVALEENNI--PFEYQPGEGAFYGPKIEFTLYDCLDRAWQCGTV-QLDFSLPGRLSAS 496 (642)
T ss_pred CHHCCCCHHHHHHHHHHHHHHHHHCCC--CEEECCCCCCCCCCCCCEEEECCCCCEEEECCC-EEECCCHHHCCCE
T ss_conf 220258888999999999999997399--704556763444553025997078976880232-4300135442888
No 82
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=76.38 E-value=2.7 Score=21.27 Aligned_cols=149 Identities=13% Similarity=0.158 Sum_probs=85.6
Q ss_pred HHHHHHCCCCC-HHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 13333113458-78999999984022210345623664034543344025676767653523346676554434576789
Q gi|254780316|r 410 EVKRLSGIDVP-IEDSLRILERLGFSVIGEYDKFEVSVPSWRQDVEEKADLVEEILRIYGVDQIKSEPLPLTQVEDKRNL 488 (805)
Q Consensus 410 ~i~~ilG~~i~-~~ei~~iL~~Lgf~v~~~~~~~~V~vPs~R~DI~~e~DLiEEIaRiyGYdnIp~~~l~~~~~~~~~~~ 488 (805)
.+.|+-|+.++ .++....|+++.=--+.+ +|. |-.+- -++-++.. +.-+| -. .++..
T Consensus 211 ~LqRIYG~af~~k~~L~~~l~~~eEakkRD----------HRk-lGkel-------~LF~f~~~-~pGl~--~w-~P~G~ 268 (639)
T PRK00413 211 MLQRIYGTAWADKEDLDAYLHRLEEAEKRD----------HRK-LGKEL-------DLFSFQEE-GPGLP--FW-HPKGW 268 (639)
T ss_pred CEEEEEEEECCCHHHHHHHHHHHHHHHHCC----------HHH-HHHHC-------CCEEECCC-CCCCE--EE-CCCHH
T ss_conf 038999985199899999999999988528----------888-87743-------51570366-88764--66-37689
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH----HHHHHCCCCCCCCCCCCCCCCHHHCHHHHHHHHHCCCCC
Q ss_conf 9889546789887877877402321004825765520----000000024677643210151221106776432101586
Q gi|254780316|r 489 SLQQSRTRYVKRVLASRAMMEVVNWSFISKEQSVLFG----GGQRELEILNPISADMSNMRTSLLPGLLKATGRNVDRAI 564 (805)
Q Consensus 489 ~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~----~~~~~i~l~NPlS~e~s~lR~SLlp~LL~~~~~N~~r~~ 564 (805)
...+.+.+.+|+.....||+||.|-.+.+.+.-+.-| +.++..... -...+.=.|||---|+......... |..
T Consensus 269 ~i~~~le~~~r~~~~~~Gy~eV~TP~i~~~~Lw~~SGHw~~Y~e~Mf~~~-~~~~~~~~lKPMNCP~H~~if~~~~-~SY 346 (639)
T PRK00413 269 IIRNELEDYMRRRHLKAGYQEVNTPHILDRSLWETSGHWDHYRENMFPTM-SDDGEDYALKPMNCPGHILIFKSGL-RSY 346 (639)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCHHHHCCCCCCCE-ECCCCEEEECCCCCCCHHHHHHCCC-CCH
T ss_conf 99999999999999986985983641346889965474223225422324-0152103204668700335644355-355
Q ss_pred C--HHHHHHHCCCCCCCCCC
Q ss_conf 1--13454302444477754
Q gi|254780316|r 565 A--DFAIFEVSHVYENDTPE 582 (805)
Q Consensus 565 ~--~i~lFEiG~Vf~~~~~~ 582 (805)
. .+|++|.|.+|+.+.++
T Consensus 347 RdLPlR~aEfg~~~R~E~SG 366 (639)
T PRK00413 347 RELPLRLAEFGTVHRYEKSG 366 (639)
T ss_pred HHCCHHHHHHHHHHCCCCCC
T ss_conf 54755666411320567787
No 83
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=76.20 E-value=3.3 Score=20.70 Aligned_cols=115 Identities=12% Similarity=0.090 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 95467898878778774023210048257655200000000246776432101512211067764321015861134543
Q gi|254780316|r 492 QSRTRYVKRVLASRAMMEVVNWSFISKEQSVLFGGGQRELEILNPISADMSNMRTSLLPGLLKATGRNVDRAIADFAIFE 571 (805)
Q Consensus 492 ~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~i~l~NPlS~e~s~lR~SLlp~LL~~~~~N~~r~~~~i~lFE 571 (805)
....+.+|+++...||.||-|-.+++..-. .......+.-.-.....+|++|=---+=..++ -+.. ++||
T Consensus 5 s~i~~~iR~ff~~~~f~EV~TP~l~~~~~~----~~~~~f~~~~~~~~~~~~L~~Spel~~k~ll~----~g~~--~if~ 74 (269)
T cd00669 5 SKIIKAIRDFMDDRGFLEVETPMLQKITGG----AGARPFLVKYNALGLDYYLRISPQLFKKRLMV----GGLD--RVFE 74 (269)
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEECCCCC----CCCCEEEEECCCCCCEEEECCCHHHHHHHHHH----CCCC--CEEE
T ss_conf 999999999999889899879853057898----76742573137899407734388999999986----5888--6799
Q ss_pred HCCCCCCCCCCCCCEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 02444477754431000221035431012462023454433331468887531111111014
Q gi|254780316|r 572 VSHVYENDTPEGQKYMAAGIRKGSSGIEGSGRLWSDKSEERCRFVDLFDAKADALSVIEPFV 633 (805)
Q Consensus 572 iG~Vf~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~df~dlKg~v~~ll~~l~ 633 (805)
||++|+.+.. ...+.. .+|.-.|... ..|+-++...++.++..+.
T Consensus 75 i~~~FR~e~~-~~rH~~--------------EFtmlE~y~~--~~d~~~~m~~~e~li~~~~ 119 (269)
T cd00669 75 INRNFRNEDL-RARHQP--------------EFTMMDLEMA--FADYEDVIELTERLVRHLA 119 (269)
T ss_pred EECCCCCCCC-CCCCCH--------------HHHHHHHHCC--CCCHHHHHHHHHHHHHHHH
T ss_conf 8462107898-655434--------------8775787514--8999999999999999999
No 84
>PRK04483 threonyl-tRNA synthetase; Validated
Probab=75.84 E-value=2.9 Score=21.11 Aligned_cols=147 Identities=12% Similarity=0.109 Sum_probs=83.7
Q ss_pred CHHHHHHCCCCCH-HHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCC
Q ss_conf 1133331134587-899999998402221034562366403454334402567676765352334-66765544345767
Q gi|254780316|r 409 SEVKRLSGIDVPI-EDSLRILERLGFSVIGEYDKFEVSVPSWRQDVEEKADLVEEILRIYGVDQI-KSEPLPLTQVEDKR 486 (805)
Q Consensus 409 ~~i~~ilG~~i~~-~ei~~iL~~Lgf~v~~~~~~~~V~vPs~R~DI~~e~DLiEEIaRiyGYdnI-p~~~l~~~~~~~~~ 486 (805)
..++|+-|+.+++ ++..+.|+++.=--+.+ +|. |-.+- -++-++.. |. +| -. .++
T Consensus 213 ~~LqRIYG~af~~k~~L~~yl~~~eEakkRD----------HRk-lGkel-------~LF~f~~~~pG--~~--~w-lP~ 269 (634)
T PRK04483 213 EQLQRIYGTAWADKKQLDAYILRMEEADKRD----------HRK-IGKAQ-------DLFHLQEEAPG--LV--FW-HPK 269 (634)
T ss_pred CCEEEEEEEEECCHHHHHHHHHHHHHHHHCC----------HHH-HHHHC-------CEEEECCCCCC--CE--EE-CCC
T ss_conf 1028999995089899999999999988658----------888-75421-------10673377886--43--88-166
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH----HHHHHCCCCCCCCCCCCCCCCHHHCHHHHHHHHHCCC
Q ss_conf 899889546789887877877402321004825765520----0000000246776432101512211067764321015
Q gi|254780316|r 487 NLSLQQSRTRYVKRVLASRAMMEVVNWSFISKEQSVLFG----GGQRELEILNPISADMSNMRTSLLPGLLKATGRNVDR 562 (805)
Q Consensus 487 ~~~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~----~~~~~i~l~NPlS~e~s~lR~SLlp~LL~~~~~N~~r 562 (805)
.....+.+.+.+|+.....||+||.|-.+.+.+.-+.-| +.++... -....+.=.|||.--|+......... |
T Consensus 270 G~~i~~~le~~~r~~~~~~Gy~eV~tP~i~~~~Lw~~SGH~~~Y~e~Mf~--~~~~~~~~~lKPMNCP~H~~if~~~~-r 346 (634)
T PRK04483 270 GWSLWQVVEQYMRKVYRDSGYGEVRCPQILDVSLWQKSGHWDNYQDAMFF--TESEKRTYAVKPMNCPGHVQVFNQGL-H 346 (634)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCEECCHHHHHHCCCHHHHHHCCCE--ECCCCCEEEECCCCCHHHHHHHHCCC-C
T ss_conf 89999999999999999829959988625137787625616455303713--42554035515768564879987177-4
Q ss_pred CCCH--HHHHHHCCCCCCCCC
Q ss_conf 8611--345430244447775
Q gi|254780316|r 563 AIAD--FAIFEVSHVYENDTP 581 (805)
Q Consensus 563 ~~~~--i~lFEiG~Vf~~~~~ 581 (805)
..++ +|++|+|.+|+.+.+
T Consensus 347 SYRdLPlR~aE~g~~~R~E~S 367 (634)
T PRK04483 347 SYRDLPIRYGEFGACHRNEPS 367 (634)
T ss_pred CHHHCCHHHHHCCCEEECCCC
T ss_conf 444343665543302205677
No 85
>KOG0556 consensus
Probab=75.70 E-value=1.9 Score=22.37 Aligned_cols=88 Identities=15% Similarity=0.269 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCHHHHHHHHHCCCCCCHHH
Q ss_conf 98895467898878778774023210048257655200000000246776432101512211067764321015861134
Q gi|254780316|r 489 SLQQSRTRYVKRVLASRAMMEVVNWSFISKEQSVLFGGGQRELEILNPISADMSNMRTSLLPGLLKATGRNVDRAIADFA 568 (805)
Q Consensus 489 ~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~i~l~NPlS~e~s~lR~SLlp~LL~~~~~N~~r~~~~i~ 568 (805)
..+.-.-..+|++|...||.|+.|--+++.... +..+..++.-- ..-.+|-+| |.|-+..+-- -..+ |
T Consensus 229 riq~gvc~~FRe~L~~kgF~EIhTpKli~asSE----GGanvF~v~Yf--k~~A~LAQS--PQLyKQMaI~--gdf~--r 296 (533)
T KOG0556 229 RIQAGVCFAFREYLRSKGFVEIHTPKLIGASSE----GGANVFRVSYF--KQKAYLAQS--PQLYKQMAIC--GDFE--R 296 (533)
T ss_pred EHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCC----CCCEEEEEEEC--CCCCHHHCC--HHHHHHHHHH--CCHH--H
T ss_conf 068889999999997568604326320146677----77226899860--675032058--5888778876--0611--0
Q ss_pred HHHHCCCCCCCCCCCCCEEH
Q ss_conf 54302444477754431000
Q gi|254780316|r 569 IFEVSHVYENDTPEGQKYMA 588 (805)
Q Consensus 569 lFEiG~Vf~~~~~~~~~~~~ 588 (805)
+||||.||+.+.+....++.
T Consensus 297 VyeIGpVfRAEdSnthRhlt 316 (533)
T KOG0556 297 VYEIGPVFRAEDSNTHRHLT 316 (533)
T ss_pred EEEECCEEECCCCCHHHHHH
T ss_conf 46523556604464166667
No 86
>TIGR01127 ilvA_1Cterm threonine dehydratase; InterPro: IPR005789 Serine and threonine dehydratases , are functionally and structurally related pyridoxal-phosphate dependent enzymes. L-serine dehydratase () and D-serine dehydratase () catalyze the dehydratation of L-serine (respectively D-serine) into ammonia and pyruvate. Threonine dehydratase () (TDH) catalyzes the dehydratation of threonine into alpha-ketobutarate and ammonia. In Escherichia coli and other microorganisms, two classes of TDH are known to exist. One is involved in the biosynthesis of isoleucine, the other in hydroxamino acid catabolism. Threonine synthase () is also a pyridoxal-phosphate enzyme, it catalyzes the transformation of homoserine-phosphate into threonine. It has been shown that threonine synthase is distantly related to the serine/threonine dehydratases. In all these enzymes, the pyridoxal-phosphate group is attached to a lysine residue. A form of threonine dehydratase with two copies of the C-terminal domain is described by . This model describes a phylogenetically distinct which branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any domain. Many members of this model are found in species with other isoleucine biosynthetic enzymes.; GO: 0004794 L-threonine ammonia-lyase activity.
Probab=75.54 E-value=5.7 Score=18.98 Aligned_cols=282 Identities=19% Similarity=0.195 Sum_probs=150.9
Q ss_pred CCCCCCHHHHHHHCCCCCCCCCEEEECCCCCCCC-CHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 8650545411887699854775078168888884-558870888559998708785766555789998776411566665
Q gi|254780316|r 111 GIESTGMMCSEKELMLSDDSASIMELPIDAPVGG-RLSDYLELSDPIIDVSLTPNRSDCIGVRGIALDLVAAGLGKLKEI 189 (805)
Q Consensus 111 Gv~S~GMlCS~~ELgl~~~~~gI~~l~~~~~~G~-~~~~~l~l~D~i~ei~iTpNR~D~ls~~GiARElaa~~~~~l~~~ 189 (805)
|-.-+|-=-|++--|+.. .++.|+.+|+-+ ...+-|| .+.||.=. |.=-.+-.|.+++...+.-+-+|
T Consensus 57 GNHAQGVA~AA~~~Gi~a----~IVMPE~aP~~Kv~AT~~yG-AEViL~G~------~~DEA~~~A~~~~~~~g~~fvHp 125 (381)
T TIGR01127 57 GNHAQGVALAAKVFGIKA----KIVMPEYAPLSKVKATKSYG-AEVILHGA------DYDEAYALAEELAEEEGRVFVHP 125 (381)
T ss_pred CCHHHHHHHHHHHCCCCC----EEECCCCCHHHHHHHHHHCC-CEEEECCC------CHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 543789999987618774----68788767357899976269-61898088------70789999999998609878740
Q ss_pred CCCCCCC---CCCCCCEEEEEEE--CCCHHHHHHHCCCCCCC----------------CCCCCHHHHHHHHHHCCCCCHH
Q ss_conf 5456677---7777741589840--73111233201123224----------------5566377878888640132103
Q gi|254780316|r 190 NISCPLS---SESIPLEIKFDLD--DSSLCKGFAMCCVKGVR----------------NNVAPNWMRQRLKAVGLRSISA 248 (805)
Q Consensus 190 ~~~~~~~---~~~~~~~i~v~i~--~~~~c~~y~~~~i~~v~----------------~~~SP~wl~~rL~~~Gir~inn 248 (805)
++.+.- ..++.+++-=+.. |.=..|-=.|-.|.||. -.-+|. |.+
T Consensus 126 -F~D~~vmAGQGTigLEi~ed~pd~D~viVPVGGGGLISGv~~a~K~~~P~VkvIGV~aE~ap~-m~~------------ 191 (381)
T TIGR01127 126 -FDDEYVMAGQGTIGLEIMEDLPDVDTVIVPVGGGGLISGVASAAKKLNPEVKVIGVEAEGAPS-MVE------------ 191 (381)
T ss_pred -CCCCEEEECCCHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCHH-HHH------------
T ss_conf -588778616748999999647981379984178712879999998728994799860278558-999------------
Q ss_pred HHHHHHHHHHHHCCCEEEECCCCCCCEEEEEECCCCC---------CHHHHHHHCCC-----CCCCCEEEECCCCCCCCH
Q ss_conf 9999989998608700000102233326886235543---------11455420112-----454320000256763100
Q gi|254780316|r 249 LVDITNYVSLDRGYPSHVFDASRISDVLTVRRACSGE---------KILALDNQEYD-----LSPDNVVIASDGRIQSIA 314 (805)
Q Consensus 249 iVDitNyvmle~GqPlHafD~dki~~~i~vr~a~~~E---------~~~~Ld~~e~~-----L~~~~lvI~d~~~~iala 314 (805)
-|.-|||-.+=--+.|.+.|.||.+..-. .+++-|+.|.. |-+..=+++-+.++.++|
T Consensus 192 --------Sl~~Gk~~~v~~~~tiADGIaVk~pG~lTF~i~k~~VD~~V~V~eeEIA~A~~~LLEr~Ki~aEGAGA~gvA 263 (381)
T TIGR01127 192 --------SLREGKIKAVESVDTIADGIAVKKPGDLTFNIVKEYVDEVVAVDEEEIAKAILLLLERAKIVAEGAGAVGVA 263 (381)
T ss_pred --------HHHCCCEEEECCCCEEECCCEECCCCCCCHHHHHHHCCCEEEECHHHHHHHHHHHHCCCCEEECCCHHHHHH
T ss_conf --------985199056045641415211637887674789974797088473779999999860774788274589999
Q ss_pred HHCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHCC--CC--CCHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 111355312013672699997157878887788761654015544134--55--30135889998887521233455565
Q gi|254780316|r 315 GIIGGKHAGCDDNTTDVLVEVALWDPINIARSGKNLGIITDSRYRFER--GV--DLQGMIPVLKHIVSLILSLCGGTASD 390 (805)
Q Consensus 315 GImGg~~s~v~~~T~~illEsA~F~p~~Ir~tar~l~l~TdaS~RfER--gv--d~~~~~~al~r~~~Li~e~~gg~~~~ 390 (805)
=||..+---++-.+.-|++=-.+-|+..+.+=-.| || .-++|.=| ++ |--. +|.++...+.+. ++.+..
T Consensus 264 A~L~~K~~~~kG~K~~~v~SGGNID~~~l~~iI~k-GL--~~~GR~v~I~~~~~D~PG---~L~~ll~~~A~~-~aNi~~ 336 (381)
T TIGR01127 264 AVLEDKVDYVKGKKVAVVVSGGNIDLNLLEKIILK-GL--VKSGRKVRIETVIPDRPG---ALYKLLEVIAEE-RANIVK 336 (381)
T ss_pred HHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHH-HH--HCCCCEEEEEEEEECCCC---CHHHHHHHHHHH-CCCEEE
T ss_conf 99975403689828999985477686677788655-22--205836999999823898---669999999981-697899
Q ss_pred CEEEEECCCCCCCEECCCCHHHHHHCCC--CCHHHHHHHHHHHHHHHH
Q ss_conf 2587413554310000431133331134--587899999998402221
Q gi|254780316|r 391 ICIARNITYKPRKIVFMNSEVKRLSGID--VPIEDSLRILERLGFSVI 436 (805)
Q Consensus 391 ~~~~~~~~~~~~~I~l~~~~i~~ilG~~--i~~~ei~~iL~~Lgf~v~ 436 (805)
+..+.. .+.|..-..+|.=-|=+. --.+++.+.|..+||++.
T Consensus 337 i~hDR~----~~~~~~G~a~v~~~LEt~g~~H~~ei~~~L~~~Gy~f~ 380 (381)
T TIGR01127 337 IEHDRL----SKEIPPGFAKVELELETRGKEHLDEILKVLRDKGYEFK 380 (381)
T ss_pred EEECCC----CCCCCCCCEEEEEEEEECCHHHHHHHHHHHHHCCCEEC
T ss_conf 997375----77778675389999840886899999999976375442
No 87
>PRK09350 lysyl-tRNA synthetase; Provisional
Probab=75.01 E-value=2.2 Score=21.93 Aligned_cols=116 Identities=12% Similarity=0.143 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCHH--HHHHHHHHHHHCC--CCCCC--CCCCCCCCCHHHCHHHHHHHHHCCCC
Q ss_conf 889546789887877877402321004825--7655200000000--24677--64321015122110677643210158
Q gi|254780316|r 490 LQQSRTRYVKRVLASRAMMEVVNWSFISKE--QSVLFGGGQRELE--ILNPI--SADMSNMRTSLLPGLLKATGRNVDRA 563 (805)
Q Consensus 490 ~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~--~~~~~~~~~~~i~--l~NPl--S~e~s~lR~SLlp~LL~~~~~N~~r~ 563 (805)
...+..+.+|++|...||.||-|=.|+... ... ..+.+ ..-|- ....-+|++| |.|-.-.. +.-|
T Consensus 18 ~Rs~i~~~iR~ff~~~gFlEVeTP~L~~~t~~~~~-----~~~f~~~~~~~~~~~~~~~yL~~S--Pql~~k~l--~~~G 88 (325)
T PRK09350 18 KRAAIIAEIRRFFADRGVLEVETPAMSQATVTDIH-----LVPFETRFVGPGHSQGKTLWLMTS--PEYHMKRL--LAAG 88 (325)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCC-----CCCEEEECCCCCCCCCCCEEEECC--HHHHHHHH--HHCC
T ss_conf 99999999999999889689779842577887646-----762221025655456766455079--19999999--8667
Q ss_pred CCHHHHHHHCCCCCCCCCCCCCEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 6113454302444477754431000221035431012462023454433331468887531111111014
Q gi|254780316|r 564 IADFAIFEVSHVYENDTPEGQKYMAAGIRKGSSGIEGSGRLWSDKSEERCRFVDLFDAKADALSVIEPFV 633 (805)
Q Consensus 564 ~~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~df~dlKg~v~~ll~~l~ 633 (805)
.. ++||||++|+.+... ..+..- +|...|.. ...|+.++-..++.++....
T Consensus 89 ~~--rvfqI~~~FR~E~~~-~~H~pE--------------FtmlE~~~--~~~d~~d~m~~~e~ll~~~~ 139 (325)
T PRK09350 89 SG--PIFQLCRSFRNEEAG-RYHNPE--------------FTMLEWYR--PHYDMYRLMNEVDDLLQQVL 139 (325)
T ss_pred CC--CEEEEEHHHCCCCCC-CCCCCH--------------HHHHHHHH--HCCCHHHHHHHHHHHHHHHH
T ss_conf 88--558961132289998-765737--------------78889998--15489999999999999997
No 88
>pfam09840 DUF2067 Uncharacterized protein conserved in archaea (DUF2067). This domain, found in various archaeal proteins, has no known function.
Probab=74.76 E-value=2.6 Score=21.38 Aligned_cols=62 Identities=26% Similarity=0.301 Sum_probs=49.2
Q ss_pred CCEECCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 1000043113333113458789999999840222103456236640345433440256767676535
Q gi|254780316|r 402 RKIVFMNSEVKRLSGIDVPIEDSLRILERLGFSVIGEYDKFEVSVPSWRQDVEEKADLVEEILRIYG 468 (805)
Q Consensus 402 ~~I~l~~~~i~~ilG~~i~~~ei~~iL~~Lgf~v~~~~~~~~V~vPs~R~DI~~e~DLiEEIaRiyG 468 (805)
....+..+.+.+-+|..++.+-+.+.|+.||+++...++.+...+| | ..-.++++++.++|-
T Consensus 69 gl~~y~l~~l~re~~~pvp~~~L~~aL~llG~~~e~~~~~i~T~ap-~----eev~e~~~~L~eiy~ 130 (190)
T pfam09840 69 GLFEYPLSDLFRELGRPVPPDLLADALRLLGYRVEVRGDVIKTNAP-L----EEVVEVARELSEIYK 130 (190)
T ss_pred CCEEECHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEECCEEEECCC-H----HHHHHHHHHHHHHHH
T ss_conf 8479719999997079999899999999679568976775673697-9----999999999999999
No 89
>PRK08198 threonine dehydratase; Provisional
Probab=74.18 E-value=2.4 Score=21.68 Aligned_cols=292 Identities=16% Similarity=0.186 Sum_probs=143.0
Q ss_pred CCCCCCHHHHHHHCCCCCCCCCEEEECCCCCCCC-CHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 8650545411887699854775078168888884-558870888559998708785766555789998776411566665
Q gi|254780316|r 111 GIESTGMMCSEKELMLSDDSASIMELPIDAPVGG-RLSDYLELSDPIIDVSLTPNRSDCIGVRGIALDLVAAGLGKLKEI 189 (805)
Q Consensus 111 Gv~S~GMlCS~~ELgl~~~~~gI~~l~~~~~~G~-~~~~~l~l~D~i~ei~iTpNR~D~ls~~GiARElaa~~~~~l~~~ 189 (805)
|...+|+-++++.+|+. ..+++|+.+|.-. ...+.|| -.++-.. ++--| .+-.|++++.-.+..+-+|
T Consensus 81 GNHaqgvA~aa~~~gi~----a~IvmP~~ap~~Ki~~~r~~G--A~Vil~G--~~~~e---a~~~A~~~a~e~g~~~ihp 149 (406)
T PRK08198 81 GNHAQGVAYAASLLGIK----ATIVMPETAPLSKVQATKSYG--AEVVLHG--DVYDE---ALAAALELAEETGATFVHP 149 (406)
T ss_pred CHHHHHHHHHHHHCCCC----EEEEECCCCCHHHHHHHHHCC--CEEEEEC--CCHHH---HHHHHHHHHHHCCCEEECC
T ss_conf 76999999999981998----899936778899999998479--8899969--98689---9999999997438675389
Q ss_pred CCCCCCCCC---CCCCEEEEEEE--CCCHHHHHHHCCCCCCCCCCCCHHHHHH---HHHHCCCCCHHHHHHHHHHHHHHC
Q ss_conf 545667777---77741589840--7311123320112322455663778788---886401321039999989998608
Q gi|254780316|r 190 NISCPLSSE---SIPLEIKFDLD--DSSLCKGFAMCCVKGVRNNVAPNWMRQR---LKAVGLRSISALVDITNYVSLDRG 261 (805)
Q Consensus 190 ~~~~~~~~~---~~~~~i~v~i~--~~~~c~~y~~~~i~~v~~~~SP~wl~~r---L~~~Gir~inniVDitNyvmle~G 261 (805)
+..+.... ....++--... |.-.+|.=.|-.+.|+. .|++.. ..-+|.-|.+. -+-|.-+..|
T Consensus 150 -fdd~~viaGqGTiglEileq~p~~D~vvvpvGGGGLiaGia-----~a~K~~~P~ikViGVEpe~a---~~~~~Sl~ag 220 (406)
T PRK08198 150 -FDDPDVIAGQGTIGLEILEDLPDVDTVVVPIGGGGLISGVA-----TAVKALRPNVRVIGVQAEGA---PAMPLSLAAG 220 (406)
T ss_pred -CCCHHHHCCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHH-----HHHHHHCCCCCEEEEEECCC---HHHHHHHHCC
T ss_conf -89954660101499999986777787886378626889999-----99998689970899965787---6899999849
Q ss_pred CCEEEECCCCCCCEEEEEECCCCCCHHHHHH---HCCCCCC------------CCEEEECCCCCCCCHHHCCCCCCCCCC
Q ss_conf 7000001022333268862355431145542---0112454------------320000256763100111355312013
Q gi|254780316|r 262 YPSHVFDASRISDVLTVRRACSGEKILALDN---QEYDLSP------------DNVVIASDGRIQSIAGIIGGKHAGCDD 326 (805)
Q Consensus 262 qPlHafD~dki~~~i~vr~a~~~E~~~~Ld~---~e~~L~~------------~~lvI~d~~~~ialaGImGg~~s~v~~ 326 (805)
+|...=..+.+.+.+.|+...+ .+|..+.. .-...++ ..=+++.+..++++|+++-+.. .+..
T Consensus 221 ~~v~~~~~~tiADGiav~~~G~-~tf~i~~~~vD~vv~V~e~eI~~A~~~l~e~~k~vvEpaGA~~lAAll~~~~-~~~g 298 (406)
T PRK08198 221 RPVELESVDTIADGIAVKRPGD-LTFPIIRELVDDVVTVSDEEIARAILLLLERAKLVVEGAGAVSVAALLSGKV-KVRG 298 (406)
T ss_pred CCEECCCCCEEECCCCCCCCCH-HHHHHHHHCCCCEEEECHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHCCC-CCCC
T ss_conf 9565599997971144687778-8999999629978998999999999999997491774289999999984773-3479
Q ss_pred CCCEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECC---CCCCC
Q ss_conf 672699997157878887788761654015544134553013588999888752123345556525874135---54310
Q gi|254780316|r 327 NTTDVLVEVALWDPINIARSGKNLGIITDSRYRFERGVDLQGMIPVLKHIVSLILSLCGGTASDICIARNIT---YKPRK 403 (805)
Q Consensus 327 ~T~~illEsA~F~p~~Ir~tar~l~l~TdaS~RfERgvd~~~~~~al~r~~~Li~e~~gg~~~~~~~~~~~~---~~~~~ 403 (805)
.+--+++=-++.|+...++-..|--+...-..||.=-+ .-..=+|.+++.+|.+. ++.+.++....... .....
T Consensus 299 k~Vv~ilsGGNiD~~~l~~i~er~l~~~gr~~~~~v~i--~d~PG~l~~~~~~i~~~-~anI~~i~h~R~~~~~~~~~~~ 375 (406)
T PRK08198 299 KKVVAVLSGGNIDVLLLSRVIERGLVAAGRYLKLRVEL--PDRPGQLAKLLSIIAEL-RANVIDVDHDRFSPGLRLGEVE 375 (406)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEEC--CCCCCHHHHHHHHHHHC-CCCEEEEEEEECCCCCCCCEEE
T ss_conf 84999972578798999999999877659979999982--78996799999999757-9937999988725778866489
Q ss_pred EECCCCHHHHHHCCCCC----HHHHHHHHHHHHHHHH
Q ss_conf 00043113333113458----7899999998402221
Q gi|254780316|r 404 IVFMNSEVKRLSGIDVP----IEDSLRILERLGFSVI 436 (805)
Q Consensus 404 I~l~~~~i~~ilG~~i~----~~ei~~iL~~Lgf~v~ 436 (805)
+. ++++.. .+++.+-|+.-||.++
T Consensus 376 v~---------~~iEt~~~~h~~~i~~~L~~~Gy~~~ 403 (406)
T PRK08198 376 VE---------LTLETRGPEHIDEILAALRDAGYEVK 403 (406)
T ss_pred EE---------EEEEECCHHHHHHHHHHHHHCCCCEE
T ss_conf 99---------99992999999999999997899459
No 90
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=73.16 E-value=2.9 Score=21.06 Aligned_cols=108 Identities=16% Similarity=0.199 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH--HHHCCCCCCCCCCCCCCCCHHHCHHHHHHHHHCCCCCCHHHHH
Q ss_conf 54678988787787740232100482576552000--0000024677643210151221106776432101586113454
Q gi|254780316|r 493 SRTRYVKRVLASRAMMEVVNWSFISKEQSVLFGGG--QRELEILNPISADMSNMRTSLLPGLLKATGRNVDRAIADFAIF 570 (805)
Q Consensus 493 ~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~--~~~i~l~NPlS~e~s~lR~SLlp~LL~~~~~N~~r~~~~i~lF 570 (805)
+..+.+|++|-..||-||-|--+..- .++. ..-+.-.|.+..|+ +||-+.=--|=+.+ --|.+ |+|
T Consensus 185 ~ii~~iR~fl~~~gFlEVETP~lq~i-----~GGA~ArPF~ThhNald~dl-yLRIApELyLKRli----VGG~e--rVf 252 (502)
T COG1190 185 KIIRAIREFLDDRGFLEVETPMLQPI-----PGGAAARPFITHHNALDMDL-YLRIAPELYLKRLI----VGGFE--RVF 252 (502)
T ss_pred HHHHHHHHHHHHCCCEEECCCCCCCC-----CCCCCCCCCEEEECCCCCCE-EEEECCHHHHHHHH----HCCCH--HHE
T ss_conf 99999999998779758416000355-----78732265012202367756-87624189999887----53721--422
Q ss_pred HHCCCCCCCCCCC---CCEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 3024444777544---3100022103543101246202345443333146888753111111101
Q gi|254780316|r 571 EVSHVYENDTPEG---QKYMAAGIRKGSSGIEGSGRLWSDKSEERCRFVDLFDAKADALSVIEPF 632 (805)
Q Consensus 571 EiG~Vf~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~df~dlKg~v~~ll~~l 632 (805)
|||++|+++.-.. -+..... ..| .-.|+.|+....+.++..+
T Consensus 253 EIgr~FRNEGid~tHNPEFTmlE------------~Y~--------AYaDy~D~m~ltE~Li~~~ 297 (502)
T COG1190 253 EIGRNFRNEGIDTTHNPEFTMLE------------FYQ--------AYADYEDLMDLTEELIKEL 297 (502)
T ss_pred EECCCCCCCCCCCCCCCCHHHHH------------HHH--------HHHHHHHHHHHHHHHHHHH
T ss_conf 30552003787666484235689------------999--------9857999999999999999
No 91
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=71.14 E-value=5.7 Score=19.00 Aligned_cols=59 Identities=17% Similarity=0.196 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHCCCEEEEEECCCCCCCE-EEEEEEEEEECCCCCCCEEEEECCCCCEEEEECCCCCC
Q ss_conf 98899999987458604211124656874-89999997565799870899975999579897548345
Q gi|254780316|r 16 VSLEKICDTLTSIGLEVEKVDNREALSPF-TIVKVLSVERNPDLDCAILRIDTGKHQEIQVVCGAPNV 82 (805)
Q Consensus 16 ~~~~~l~~~lt~~G~EVe~i~~~~~~~~v-vvg~v~~~~~hP~adl~v~~Vd~g~~~~~~IvcgA~Nv 82 (805)
.+..++.+....+-- ++. ..-..| +.|.|.....|- .+....+..+++ .+|||+...++
T Consensus 33 ~~~~~~~~~~~~~~~--~~~---~~~~~V~vaGrv~~~R~~G--k~~F~~lrD~~g-~iQ~~~~~~~~ 92 (491)
T PRK00484 33 HTSAELQAKYADLEK--EEL---EALIEVSVAGRVMLKRVMG--KASFATIQDGSG-RIQLYVSKDDV 92 (491)
T ss_pred CCHHHHHHHHHHCCC--CCC---CCCCEEEEEEEEEEEECCC--CEEEEEEEECCC-CEEEEEECCCC
T ss_conf 669999998751385--334---6798899998784050569--819999996994-58999966758
No 92
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=70.49 E-value=5.8 Score=18.96 Aligned_cols=146 Identities=9% Similarity=0.116 Sum_probs=84.4
Q ss_pred HHHHHHCCCCC-HHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCCC
Q ss_conf 13333113458-7899999998402221034562366403454334402567676765352334-667655443457678
Q gi|254780316|r 410 EVKRLSGIDVP-IEDSLRILERLGFSVIGEYDKFEVSVPSWRQDVEEKADLVEEILRIYGVDQI-KSEPLPLTQVEDKRN 487 (805)
Q Consensus 410 ~i~~ilG~~i~-~~ei~~iL~~Lgf~v~~~~~~~~V~vPs~R~DI~~e~DLiEEIaRiyGYdnI-p~~~l~~~~~~~~~~ 487 (805)
.+.|+-|+.++ +++..+.|++|.=--..+ +|. |-.+- -++-++.. |..| .. .++.
T Consensus 217 ~LqRIYG~af~~k~~L~~yl~~leEakkRD----------HRk-lGkel-------~LF~f~~~~pG~~----fw-lP~G 273 (639)
T PRK12444 217 VLQRIYGVAFSSQKELEEYLHFVEEAAKRN----------HRK-LGNEL-------ELFMFSEEAPGMP----FY-LPKG 273 (639)
T ss_pred CEEEEEEEEECCHHHHHHHHHHHHHHHHCC----------HHH-HHHHC-------CEEEECCCCCCCE----EE-ECCH
T ss_conf 216899998588577999999999988647----------887-65322-------7288227789744----78-4678
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH----HHHHHCCCCCCCCCCCCCCCCHHHCHHHHHHHHHCCCC
Q ss_conf 99889546789887877877402321004825765520----00000002467764321015122110677643210158
Q gi|254780316|r 488 LSLQQSRTRYVKRVLASRAMMEVVNWSFISKEQSVLFG----GGQRELEILNPISADMSNMRTSLLPGLLKATGRNVDRA 563 (805)
Q Consensus 488 ~~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~----~~~~~i~l~NPlS~e~s~lR~SLlp~LL~~~~~N~~r~ 563 (805)
....+.+.+.+|+.....||+||.|-.+.+.+.-+.-| +.++.. .. -+..+.=.|||---|+......... |.
T Consensus 274 ~~i~~~le~~~r~~~~~~GY~eV~TP~i~~~~Lw~~SGH~~~Y~e~Mf-~~-~~d~~~~~lKPMNCP~H~~if~~~~-rS 350 (639)
T PRK12444 274 QIIRNELEAFLREIQKEYNYQEVRTPFMMNQELWERSGHWGHYKDNMY-FS-EVDNKSFALKPMNCPGHMLMFKNKL-HS 350 (639)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEECCCEEEHHHHHHHCCHHHHHHHCCC-CC-CCCCCEEECCCCCCHHHHHHHHCCC-CC
T ss_conf 699999999999999983987822866621568761660433330275-54-5454033126768588999986056-21
Q ss_pred CCH--HHHHHHCCCCCCCCC
Q ss_conf 611--345430244447775
Q gi|254780316|r 564 IAD--FAIFEVSHVYENDTP 581 (805)
Q Consensus 564 ~~~--i~lFEiG~Vf~~~~~ 581 (805)
.++ +|++|+|.||+.+.+
T Consensus 351 YRdLPlR~aEfg~vhR~E~S 370 (639)
T PRK12444 351 YRELPIRMCEFGQVHRHEFS 370 (639)
T ss_pred HHHCCHHHHHCCCEECCCCC
T ss_conf 44365222433646337787
No 93
>TIGR03220 catechol_dmpE 2-oxopent-4-enoate hydratase. Members of this protein family are 2-oxopent-4-enoate hydratase, which is also called 2-hydroxypent-2,4-dienoate hydratase. It is closely related to another gene found in the same operon, 4-oxalocrotonate decarboxylase, with which it interacts closely.
Probab=69.63 E-value=7.8 Score=18.05 Aligned_cols=23 Identities=22% Similarity=0.554 Sum_probs=10.2
Q ss_pred EEE-EEEECHHHHHHCCCCCCEEE
Q ss_conf 999-85477899996687997899
Q gi|254780316|r 664 LGY-FGEFHPNILDFFGLSNPICG 686 (805)
Q Consensus 664 iG~-iG~ihP~i~~~~~i~~~v~~ 686 (805)
+|| +|--++...+.+++..|+|+
T Consensus 53 vG~KiG~Ts~~~q~~~gv~~P~~G 76 (255)
T TIGR03220 53 IGKKIGVTSKAVMNMLGVYQPDFG 76 (255)
T ss_pred EEEEEECCCHHHHHHHCCCCCCEE
T ss_conf 899983289999997197999468
No 94
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=69.26 E-value=6 Score=18.83 Aligned_cols=114 Identities=11% Similarity=0.121 Sum_probs=66.5
Q ss_pred HHHHHCCCCCC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH------HHHHHHHHHHCCCC
Q ss_conf 76765352334-667655443457678998895467898878778774023210048257------65520000000024
Q gi|254780316|r 462 EILRIYGVDQI-KSEPLPLTQVEDKRNLSLQQSRTRYVKRVLASRAMMEVVNWSFISKEQ------SVLFGGGQRELEIL 534 (805)
Q Consensus 462 EIaRiyGYdnI-p~~~l~~~~~~~~~~~~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~------~~~~~~~~~~i~l~ 534 (805)
+++|-.|+-.. |....--.... ++.....+.+.+.+++.....|+.||.|-.+.+.+. ...|+ ++...+.
T Consensus 201 ~~mr~~~~~dyEp~Sd~G~~rw~-PkG~~i~~lle~Yv~~~~~~~G~~eV~TP~m~d~~~~~~sgH~~~f~--e~my~~~ 277 (613)
T PRK03991 201 ELMRKKELADYEPGSDVGHMRYY-PKGRLMKDLLEDYVYNLVKELGAMPVETPNMYDLSHPAIREHADKFG--ERQYRVK 277 (613)
T ss_pred HHHHHCCCCCCCCCCCCCCEEEC-CCHHHHHHHHHHHHHHHHHHCCCEEEECCCEEECCCCHHHHHHHHHC--CCCEEEE
T ss_conf 99987176555747877751235-54789999999999999986396684576164055402556887611--1342563
Q ss_pred CCCCCCCCCCCCHHHCHHHHHHHHHCCC-CCCHHHHHHHCCC-CCCCC
Q ss_conf 6776432101512211067764321015-8611345430244-44777
Q gi|254780316|r 535 NPISADMSNMRTSLLPGLLKATGRNVDR-AIADFAIFEVSHV-YENDT 580 (805)
Q Consensus 535 NPlS~e~s~lR~SLlp~LL~~~~~N~~r-~~~~i~lFEiG~V-f~~~~ 580 (805)
...+.=.||+--=||..........- +.-.+|+||+|++ |+.+.
T Consensus 278 --~d~~~~~LrpmnCpgh~~i~~~~~~SYRdLPlRl~E~g~~syR~E~ 323 (613)
T PRK03991 278 --SDKKDLMLRFAACFGQFAMLKDMTISYKNLPLKMYELSDYSFRLEQ 323 (613)
T ss_pred --CCCHHHCCCCCCCCCCEEEECCCCCCHHHCCHHHHHHCCCEEECCC
T ss_conf --2763323044578631235102445743264677652242021256
No 95
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=68.48 E-value=6.3 Score=18.68 Aligned_cols=93 Identities=4% Similarity=0.003 Sum_probs=58.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH-----HHHHCCCCCCCC---CCCCCCCCHHHCHHHHHHHHH
Q ss_conf 998895467898878778774023210048257655200-----000000246776---432101512211067764321
Q gi|254780316|r 488 LSLQQSRTRYVKRVLASRAMMEVVNWSFISKEQSVLFGG-----GQRELEILNPIS---ADMSNMRTSLLPGLLKATGRN 559 (805)
Q Consensus 488 ~~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~-----~~~~i~l~NPlS---~e~s~lR~SLlp~LL~~~~~N 559 (805)
....++..+.+|+.|...|++|+.+-.|++.+..+.-+- ..+...+..--. ++.=.|||+-=+..-...+..
T Consensus 32 ~~i~~ki~~~i~~e~~~~G~qev~~P~l~p~~lw~ksgr~~~~~~~e~~~~~~~~~~~~e~~~~L~PT~Ee~~~~~~~~~ 111 (264)
T cd00772 32 KAILDKIENVLDKMFKEHGAQNALFPFFILASFLEKEAEHDEGFSKELAVFKDAGDEELEEDFALRPTLEENIGEIAAKF 111 (264)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 99999999999999998299498125679989999769844437852379973487421235201677868999999864
Q ss_pred CC-CCCCHHHHHHHCCCCCCCC
Q ss_conf 01-5861134543024444777
Q gi|254780316|r 560 VD-RAIADFAIFEVSHVYENDT 580 (805)
Q Consensus 560 ~~-r~~~~i~lFEiG~Vf~~~~ 580 (805)
.+ ++.-.+++|++|.+|+.+.
T Consensus 112 i~SyrdLPl~lyQ~~~~fR~E~ 133 (264)
T cd00772 112 IKSWKDLPQHLNQIGNKFRDEI 133 (264)
T ss_pred CCCHHHCCHHHHHHHHHHHCCC
T ss_conf 0766557977876557860578
No 96
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=66.17 E-value=7.6 Score=18.10 Aligned_cols=113 Identities=9% Similarity=0.106 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC-CCCCHHHCHHHHHHHHHCCCCCCHHHHH
Q ss_conf 954678988787787740232100482576552000000002467764321-0151221106776432101586113454
Q gi|254780316|r 492 QSRTRYVKRVLASRAMMEVVNWSFISKEQSVLFGGGQRELEILNPISADMS-NMRTSLLPGLLKATGRNVDRAIADFAIF 570 (805)
Q Consensus 492 ~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~i~l~NPlS~e~s-~lR~SLlp~LL~~~~~N~~r~~~~i~lF 570 (805)
....+.+|+++...||.||-|-.+++..-- .... ..+......... .|++|--- .++.+. .-|.. ++|
T Consensus 5 s~i~~~iR~ff~~~gflEV~TPiL~~~~~e----ga~~-f~~~~~~~~~~~~~L~~Spel-~~k~l~---~~g~~--rvf 73 (280)
T cd00777 5 SRVIKAIRNFLDEQGFVEIETPILTKSTPE----GARD-FLVPSRLHPGKFYALPQSPQL-FKQLLM---VSGFD--RYF 73 (280)
T ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCCCCC----CCCC-CEECCCCCCCCCCCCCCCHHH-HHHHHH---HCCCC--CCE
T ss_conf 999999999999889899879810687877----6766-442441688760368879899-999998---56877--757
Q ss_pred HHCCCCCCCCCCCCCEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 30244447775443100022103543101246202345443333146888753111111101
Q gi|254780316|r 571 EVSHVYENDTPEGQKYMAAGIRKGSSGIEGSGRLWSDKSEERCRFVDLFDAKADALSVIEPF 632 (805)
Q Consensus 571 EiG~Vf~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~df~dlKg~v~~ll~~l 632 (805)
|||++|+++..... +.. .+|...|... ..|+.++...++.++..+
T Consensus 74 ~i~~~FR~E~~~~~-h~~--------------EFtmLE~e~~--~~~~~d~m~~~E~li~~i 118 (280)
T cd00777 74 QIARCFRDEDLRAD-RQP--------------EFTQIDIEMS--FVDQEDIMSLIEGLLKYV 118 (280)
T ss_pred EEECEECCCCCCCC-CCH--------------HHHHHHHHCC--CCCHHHHHHHHHHHHHHH
T ss_conf 98451747888876-634--------------7762344226--888999999999999999
No 97
>PRK06462 asparagine synthetase A; Reviewed
Probab=66.00 E-value=4.6 Score=19.67 Aligned_cols=117 Identities=15% Similarity=0.123 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCHHHHHHHHHCCCCCCHHHH
Q ss_conf 88954678988787787740232100482576552000000002467764321015122110677643210158611345
Q gi|254780316|r 490 LQQSRTRYVKRVLASRAMMEVVNWSFISKEQSVLFGGGQRELEILNPISADMSNMRTSLLPGLLKATGRNVDRAIADFAI 569 (805)
Q Consensus 490 ~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~i~l~NPlS~e~s~lR~SLlp~LL~~~~~N~~r~~~~i~l 569 (805)
......+.+|++|...||.||-|-.+++...-.. ....... .|-. ...-+||.|----|=..+. -|.. |+
T Consensus 31 iRs~i~~~iR~f~~~~gF~EV~TPiL~~~~~~~~--~~~~~~~-~~~~-~~~~~L~~Spql~lk~li~----~g~~--rV 100 (332)
T PRK06462 31 IQSSILRYTREFLDGRGFVEVLPPIISPSTDPLM--GDAKPAS-IDFY-GVEYYLADSMIFHKQLMLR----LLKG--KV 100 (332)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCC--CCCCCCE-EECC-CCCEEECCCHHHHHHHHHH----CCCC--CE
T ss_conf 9999999999999888999987972367788766--7760105-8448-9863314586999999986----3899--77
Q ss_pred HHHCCCCCCCCCCC--CCEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 43024444777544--3100022103543101246202345443333146888753111111101
Q gi|254780316|r 570 FEVSHVYENDTPEG--QKYMAAGIRKGSSGIEGSGRLWSDKSEERCRFVDLFDAKADALSVIEPF 632 (805)
Q Consensus 570 FEiG~Vf~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~df~dlKg~v~~ll~~l 632 (805)
||||++|+++.... ..++.- +|.-.|.. ...|+.++...++.++...
T Consensus 101 feIg~~FR~E~~d~~t~rHlpE--------------Ft~lE~y~--a~~d~~d~m~~~E~li~~i 149 (332)
T PRK06462 101 FYLSPNFRLEPVDKDTGRHLYE--------------FTQLDIEI--EGADLEEVMSLAEDLIKYL 149 (332)
T ss_pred EEECCHHHCCCCCCCCCCCCHH--------------HHHHHHHH--HHCCHHHHHHHHHHHHHHH
T ss_conf 9974523168777677765457--------------77655878--7389999999999999999
No 98
>TIGR00308 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs . The enzyme is found in both eukaryotes and archaea .; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing.
Probab=65.85 E-value=6 Score=18.82 Aligned_cols=23 Identities=17% Similarity=0.678 Sum_probs=10.8
Q ss_pred CEEEECCCCCCCCCHHHHHHHHHH
Q ss_conf 236640345433440256767676
Q gi|254780316|r 442 FEVSVPSWRQDVEEKADLVEEILR 465 (805)
Q Consensus 442 ~~V~vPs~R~DI~~e~DLiEEIaR 465 (805)
+.+.=|-|=-||.. -++|||+++
T Consensus 342 ~~laGPly~G~L~~-~~fiEe~~~ 364 (462)
T TIGR00308 342 YDLAGPLYVGELKD-KEFIEEVLK 364 (462)
T ss_pred CCCCCCEECCCCCC-HHHHHHHHH
T ss_conf 02115510055334-689999999
No 99
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=64.41 E-value=6.7 Score=18.51 Aligned_cols=92 Identities=7% Similarity=0.016 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH----HHHHHCCCCCCCC---CCCCCCCCHHHCHHHHHHHHHCCC
Q ss_conf 889546789887877877402321004825765520----0000000246776---432101512211067764321015
Q gi|254780316|r 490 LQQSRTRYVKRVLASRAMMEVVNWSFISKEQSVLFG----GGQRELEILNPIS---ADMSNMRTSLLPGLLKATGRNVDR 562 (805)
Q Consensus 490 ~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~----~~~~~i~l~NPlS---~e~s~lR~SLlp~LL~~~~~N~~r 562 (805)
..+.+.+.+++.+...||.|+.+-.|++.+....-+ +.++...+..+-. .+-=+||++-=+.+....+.-...
T Consensus 4 L~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~sg~~~~f~~~~y~v~~~~~~~~~~~~~L~PTsE~~~~~~~~~~i~s 83 (235)
T cd00670 4 LWRALERFLDDRMAEYGYQEILFPFLAPTVLFFKGGHLDGYRKEMYTFEDKGRELRDTDLVLRPAACEPIYQIFSGEILS 83 (235)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCEEEEECCCHHHHHHHHCCCCC
T ss_conf 99999999999999869989989855789999223867545205289823776667873899307869999999483287
Q ss_pred -CCCHHHHHHHCCCCCCCCC
Q ss_conf -8611345430244447775
Q gi|254780316|r 563 -AIADFAIFEVSHVYENDTP 581 (805)
Q Consensus 563 -~~~~i~lFEiG~Vf~~~~~ 581 (805)
..-.++++++|++|+.+..
T Consensus 84 ~~dLPlr~~~~s~~fR~E~~ 103 (235)
T cd00670 84 YRALPLRLDQIGPCFRHEPS 103 (235)
T ss_pred HHHCCEEEEEECCEECCCCC
T ss_conf 68799545445653336789
No 100
>TIGR00802 nico transition metal uptake transporter, Ni2+-Co2+ transporter (NiCoT) family; InterPro: IPR004688 This family is found in both Gram-negative and Gram-positive bacteria. The functionally characterised members of the family catalyze uptake of either Ni2+ or Co2+ in a proton motive force-dependent process. Topological analyses with the HoxN Ni2+ transporter of Ralstonia eutropha suggest that it possesses 8 TMSs with its N- and C-termini in the cytoplasm.; GO: 0015099 nickel ion transmembrane transporter activity, 0015675 nickel ion transport, 0016021 integral to membrane.
Probab=63.75 E-value=1.7 Score=22.75 Aligned_cols=41 Identities=32% Similarity=0.396 Sum_probs=30.6
Q ss_pred EEECCCCCCCEEEEEECCCCCCHHHHHHHCCCCCCCCEEEECCCCCCCCHHHCCCCCCCCCCCCCEE
Q ss_conf 0001022333268862355431145542011245432000025676310011135531201367269
Q gi|254780316|r 265 HVFDASRISDVLTVRRACSGEKILALDNQEYDLSPDNVVIASDGRIQSIAGIIGGKHAGCDDNTTDV 331 (805)
Q Consensus 265 HafD~dki~~~i~vr~a~~~E~~~~Ld~~e~~L~~~~lvI~d~~~~ialaGImGg~~s~v~~~T~~i 331 (805)
||||+|.|. +.|+..|+|- .||++|++. |...+--++|=-|
T Consensus 11 HAfDADHIA---------------AIDnttRkLm------q~G~~P~gv-----G~fFslGHStVVv 51 (290)
T TIGR00802 11 HAFDADHIA---------------AIDNTTRKLM------QQGKRPLGV-----GFFFSLGHSTVVV 51 (290)
T ss_pred HHHCHHHHH---------------HHHHHHHHHH------HCCCCCHHH-----HHHHHHCCCHHHH
T ss_conf 331334564---------------1468899976------276971113-----4546404108899
No 101
>TIGR00458 aspS_arch aspartyl-tRNA synthetase; InterPro: IPR004523 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Aspartyl tRNA synthetase 6.1.1.12 from EC is an alpha2 dimer that belongs to class IIb. Structural analysis combined with mutagenesis and enzymology data on the yeast enzyme point to a tRNA binding process that starts by a recognition event between the tRNA anticodon loop and the synthetase anticodon binding module . This family represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). ; GO: 0000166 nucleotide binding, 0004815 aspartate-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006422 aspartyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=62.53 E-value=5.2 Score=19.27 Aligned_cols=54 Identities=17% Similarity=0.179 Sum_probs=31.5
Q ss_pred HHCCCCCCCCEEEECCCCCCCCHHHCCCCCCCC---CCCCCEEEEEEECCCH-HHHHH
Q ss_conf 201124543200002567631001113553120---1367269999715787-88877
Q gi|254780316|r 292 NQEYDLSPDNVVIASDGRIQSIAGIIGGKHAGC---DDNTTDVLVEVALWDP-INIAR 345 (805)
Q Consensus 292 ~~e~~L~~~~lvI~d~~~~ialaGImGg~~s~v---~~~T~~illEsA~F~p-~~Ir~ 345 (805)
+|.-+|.+..|+.++=+++--||+|-=.+++.- -++.+.|=+|+|+-|. ..+..
T Consensus 206 ~QSPQlyKQ~l~~~g~~rVyEI~PiFRAE~~nT~RHl~E~~siDiE~~F~dhy~~v~d 263 (466)
T TIGR00458 206 GQSPQLYKQVLMAAGLERVYEIGPIFRAEEHNTRRHLNEAISIDIEMAFEDHYEDVMD 263 (466)
T ss_pred CCCCHHHHHHHHHCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 3570356687765265203550552205666521455444442244442753789999
No 102
>pfam11148 DUF2922 Protein of unknown function (DUF2922). This bacterial family of proteins has no known function.
Probab=62.06 E-value=11 Score=17.06 Aligned_cols=36 Identities=22% Similarity=0.534 Sum_probs=27.9
Q ss_pred EEECCCCCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 763677998842699999984779888999999999999999
Q gi|254780316|r 752 VFQGKSLGEGKKSVAIQVLIQPLKDTFRDDDIRILMDRIVEN 793 (805)
Q Consensus 752 vY~g~~i~~gkkSla~rl~fqs~~kTLtd~EI~~i~~~ii~~ 793 (805)
+|.. .+|| +++++...+...|+++||.++|+.|++.
T Consensus 6 ~F~~---~~gK---~~~l~i~~p~~~lt~~~V~~aM~~Ii~~ 41 (69)
T pfam11148 6 TFKT---AEGK---TVTLSLPDPKEDLTEAEVKAAMDTIIAK 41 (69)
T ss_pred EEEC---CCCC---EEEEECCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 9976---8998---8999769987778999999999999986
No 103
>TIGR01703 hybrid_clust hydroxylamine reductase; InterPro: IPR010048 Hybrid cluster proteins (HCP, or Prismane) have been identified in bacteria, archaea and eukaryotic protozoa. No specific function has yet been assigned to these proteins, but it may involve oxidoreductase enzymatic activity. These proteins contain one 4Fe-4S cluster, and one hybrid 4Fe-2O-2S cluster, the latter being similar to the Ni-Fe-S cluster found in carbon monoxide dehydrogenase enzymes (IPR010047 from INTERPRO) , . This subfamily is heterogeneous with respect to the presence or absence of a region of about 100 amino acids not far from the N terminus of the protein. Members have been described as monomeric. ; GO: 0016661 oxidoreductase activity acting on other nitrogenous compounds as donors, 0051536 iron-sulfur cluster binding, 0006118 electron transport, 0005737 cytoplasm.
Probab=61.07 E-value=7.4 Score=18.19 Aligned_cols=24 Identities=13% Similarity=0.238 Sum_probs=14.2
Q ss_pred HHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 787740232100482576552000
Q gi|254780316|r 504 SRAMMEVVNWSFISKEQSVLFGGG 527 (805)
Q Consensus 504 ~~Gf~Ev~tysl~s~~~~~~~~~~ 527 (805)
..|=.-+-+.-|.++...+.||.+
T Consensus 211 E~Gk~~l~~M~LLDkAnT~tyG~P 234 (567)
T TIGR01703 211 EVGKMNLEAMKLLDKANTDTYGEP 234 (567)
T ss_pred CCCEECHHHHHHHHHHHHHCCCCC
T ss_conf 037000247656423524247895
No 104
>pfam02005 TRM N2,N2-dimethylguanosine tRNA methyltransferase. This enzyme EC:2.1.1.32 used S-AdoMet to methylate tRNA. The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs. The enzyme is found in both eukaryotes and archaebacteria
Probab=61.02 E-value=6.4 Score=18.65 Aligned_cols=21 Identities=14% Similarity=0.124 Sum_probs=14.1
Q ss_pred HHHHHHHCCCEEEECCCCCCC
Q ss_conf 899986087000001022333
Q gi|254780316|r 254 NYVSLDRGYPSHVFDASRISD 274 (805)
Q Consensus 254 Nyvmle~GqPlHafD~dki~~ 274 (805)
|-+|.+..+..+.-|+|-...
T Consensus 111 n~lm~~~~~~fD~IDlDPfGS 131 (375)
T pfam02005 111 NMLMRENHRRFDVIDLDPFGS 131 (375)
T ss_pred HHHHHHCCCCCCEEEECCCCC
T ss_conf 999985588675686789999
No 105
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=59.13 E-value=7.3 Score=18.25 Aligned_cols=82 Identities=12% Similarity=0.066 Sum_probs=48.7
Q ss_pred CCEEEEEECCEEEEEEEEEEC-HHHH----------------------HH--CCCCCCEEEEEEEHHHHHHHHHCCCCCC
Q ss_conf 816999987929999985477-8999----------------------96--6879978999987876235452024566
Q gi|254780316|r 651 GRSGIIKTSAEIVLGYFGEFH-PNIL----------------------DF--FGLSNPICGFEVYLDSIPISQKKRTKTK 705 (805)
Q Consensus 651 grsa~I~~~gk~iiG~iG~ih-P~i~----------------------~~--~~i~~~v~~~EI~ld~L~~~~~~~~~~~ 705 (805)
.++.+++++|..+.|=-=.+| |.++ +. ||. -|.-++-+=+|.|...-... .
T Consensus 488 a~aYDLVlNG~ElggGSiRIHd~~iQ~~if~~lGl~~ee~~~kFgf~LeAf~YGa-PPHGGialGlDRLvMlLtg~---~ 563 (706)
T PRK12820 488 SRAYDLVVNGEELGGGSIRINDKDIQLRIFAALGLSEEDIEDKFGFFLRAFDFAA-PPHGGIALGLDRVVSMILQT---P 563 (706)
T ss_pred CCEEEEEECCEEEEEEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC-CCCCCEEEHHHHHHHHHCCC---C
T ss_conf 3646068999996140220389999999999759997898889999999986699-98670310399999997699---8
Q ss_pred CCCCCCCCCCCE--EEEEEEECCCCCHHHHHHH
Q ss_conf 313689888720--0189996688799999999
Q gi|254780316|r 706 KVVHLSSLHPVK--RDLAFIVDQHIPAGTLVNI 736 (805)
Q Consensus 706 ~~~~~s~fP~v~--RDls~iv~~~v~~~~I~~~ 736 (805)
.+.+..-||... +|+=.-.|..++-.++.+.
T Consensus 564 sIRDVIaFPKt~~g~dlm~~aPs~v~~~QL~El 596 (706)
T PRK12820 564 SIREVIAFPKNRSAACPLTGAPSEVAQEQLAEL 596 (706)
T ss_pred CHHHEECCCCCCCCCCCCCCCCCCCCHHHHHHC
T ss_conf 265052278998878600279886899999763
No 106
>TIGR02902 spore_lonB ATP-dependent protease LonB; InterPro: IPR014251 This entry represents LonB, a paralog of the ATP-dependent protease La (LonA, IPR004815 from INTERPRO). LonB proteins are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ) and are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore during sporulation, under control of sigmaF . The lonB gene, despite being located immediately upstream of lonA, was shown to be monocistronic. LonB appears to be involved in the post-translation control of sigmaH, but lonB mutation did not produce an obvious sporulation defect under the conditions tested . Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and these are excluded from this entry. .
Probab=58.42 E-value=3.4 Score=20.60 Aligned_cols=60 Identities=13% Similarity=0.199 Sum_probs=40.7
Q ss_pred ECCCCCCHHHHHHHCCCCCCC----CEE------EECCCCCCCCHHHCCCCCCCC-------------------------
Q ss_conf 235543114554201124543----200------002567631001113553120-------------------------
Q gi|254780316|r 280 RACSGEKILALDNQEYDLSPD----NVV------IASDGRIQSIAGIIGGKHAGC------------------------- 324 (805)
Q Consensus 280 ~a~~~E~~~~Ld~~e~~L~~~----~lv------I~d~~~~ialaGImGg~~s~v------------------------- 324 (805)
..+++-+|+-+|-.+..-|+. .|+ |+-|-+|+++|||=.=+--+|
T Consensus 117 PFke~A~FVEiDATT~RFDERGIADPLIGSVHDPIYQGAGplG~AGIPQPK~GAVT~AHGGvLFIDEIGELHP~~MNKLL 196 (532)
T TIGR02902 117 PFKEEAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGVAGIPQPKPGAVTKAHGGVLFIDEIGELHPVQMNKLL 196 (532)
T ss_pred CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHH
T ss_conf 78988668985051036021466665677615853337654578855758777632025865512124665824353141
Q ss_pred --CCCCCEEEEEEECCCH
Q ss_conf --1367269999715787
Q gi|254780316|r 325 --DDNTTDVLVEVALWDP 340 (805)
Q Consensus 325 --~~~T~~illEsA~F~p 340 (805)
=|+ +-||||||||++
T Consensus 197 KVLED-RKVFLdSAYY~s 213 (532)
T TIGR02902 197 KVLED-RKVFLDSAYYSS 213 (532)
T ss_pred HHHHC-CCCHHHCCCCCC
T ss_conf 13302-220000123587
No 107
>TIGR00418 thrS threonyl-tRNA synthetase; InterPro: IPR002320 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Threonyl-tRNA synthetase (6.1.1.3 from EC) exists as a monomer and belongs to class IIa. The enzyme from Escherichia coli represses the translation of its own mRNA. The crystal structure of the complex between tRNA(Thr) and ThrRS show structural features that reveal novel strategies for providing specificity in tRNA selection. These include an amino-terminal domain containing a novel protein fold that makes minor groove contacts with the tRNA acceptor stem. The enzyme induces a large deformation of the anticodon loop, resulting in an interaction between two adjacent anticodon bases, which accounts for their prominent role in tRNA identity and translational regulation. A zinc ion found in the active site is implicated in amino acid recognition/discrimination . The zinc ion may act to ensure that only amino acids that possess a hydroxyl group attached to the beta-position are activated .; GO: 0004829 threonine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006435 threonyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=55.43 E-value=12 Score=16.72 Aligned_cols=148 Identities=16% Similarity=0.187 Sum_probs=89.0
Q ss_pred CHHHHHHC----CCCC-HHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHH---HCCCC-CCCCCCCCC
Q ss_conf 11333311----3458-789999999840222103456236640345433440256767676---53523-346676554
Q gi|254780316|r 409 SEVKRLSG----IDVP-IEDSLRILERLGFSVIGEYDKFEVSVPSWRQDVEEKADLVEEILR---IYGVD-QIKSEPLPL 479 (805)
Q Consensus 409 ~~i~~ilG----~~i~-~~ei~~iL~~Lgf~v~~~~~~~~V~vPs~R~DI~~e~DLiEEIaR---iyGYd-nIp~~~l~~ 479 (805)
..+.|+-| +... .++..++|..+.=.... -|-||. ++| ++-|+ .+-+= +|
T Consensus 147 ~~LqRiyGn~~~~~~~~k~~L~~yl~~~eEa~~r--------~PDHRk-----------lGKeL~Lf~f~~~~gpG-~~- 205 (595)
T TIGR00418 147 EMLQRIYGNIDITAFADKKQLAEYLKRLEEAKKR--------EPDHRK-----------LGKELELFSFEPEIGPG-LP- 205 (595)
T ss_pred CEEEEECCCEEEECCCCHHHHHHHHHHHHHHHCC--------CCCHHH-----------HHHHHCCCCCCCCCCCC-CE-
T ss_conf 5378885725450145878999999999997426--------857256-----------75453123458320487-41-
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCC---CCCCCCCCCHHHCHHHHHH
Q ss_conf 4345767899889546789887877877402321004825765520000000024677---6432101512211067764
Q gi|254780316|r 480 TQVEDKRNLSLQQSRTRYVKRVLASRAMMEVVNWSFISKEQSVLFGGGQRELEILNPI---SADMSNMRTSLLPGLLKAT 556 (805)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~i~l~NPl---S~e~s~lR~SLlp~LL~~~ 556 (805)
-..+ ++......+.+.+++.+...||.||.|=-+.+.+.-+.-+-.++.=.-+-|. .+..=+||+--=||.....
T Consensus 206 -~WlP-kG~~ir~~ledf~~~~~~~~Gy~~V~TP~m~~~~l~~~sGH~~~Y~e~Mf~~~~~~~~~~~LkPMnCpgH~~i~ 283 (595)
T TIGR00418 206 -FWLP-KGALIRNLLEDFVREKQIKRGYEEVETPIMYDSELWEISGHWDHYKERMFPFTEEDNQEFMLKPMNCPGHILIF 283 (595)
T ss_pred -EECC-CHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCHHHHHHH
T ss_conf -4657-64678999999999999875886415741215654245305450342354010103530334567754453300
Q ss_pred HHHCCCCCCH--HHHHHHC-CCCCCCC
Q ss_conf 3210158611--3454302-4444777
Q gi|254780316|r 557 GRNVDRAIAD--FAIFEVS-HVYENDT 580 (805)
Q Consensus 557 ~~N~~r~~~~--i~lFEiG-~Vf~~~~ 580 (805)
+.-.+ ...+ +|++|.| .+|+.+.
T Consensus 284 k~~~~-SYR~LP~R~aE~g~~~hR~E~ 309 (595)
T TIGR00418 284 KSSLR-SYRDLPLRIAELGTTVHRYEK 309 (595)
T ss_pred CCCCC-CHHHCCCHHHHCCCEEEEEEC
T ss_conf 17777-732335034331860478842
No 108
>PRK04140 hypothetical protein; Provisional
Probab=55.13 E-value=14 Score=16.27 Aligned_cols=83 Identities=16% Similarity=0.169 Sum_probs=41.5
Q ss_pred HHHHHCCCCHHHHHHCC-CCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCEECCCCHHHHHHCCCCCHHHH
Q ss_conf 88761654015544134-55301358899988875212334555652587413554310000431133331134587899
Q gi|254780316|r 346 SGKNLGIITDSRYRFER-GVDLQGMIPVLKHIVSLILSLCGGTASDICIARNITYKPRKIVFMNSEVKRLSGIDVPIEDS 424 (805)
Q Consensus 346 tar~l~l~TdaS~RfER-gvd~~~~~~al~r~~~Li~e~~gg~~~~~~~~~~~~~~~~~I~l~~~~i~~ilG~~i~~~ei 424 (805)
=|..||.+-.+-|+||+ |.+... +.|.. +.++-|..+.+.++.-............... . =.+-...++
T Consensus 144 LA~~LGVSRrtv~~YE~g~~~~si-----evA~k-Leeif~~~i~~~Idil~~~~~~~~~~~~~~~-~---~~~~~e~~i 213 (319)
T PRK04140 144 LASELGVSRRTISKYENGGMNASI-----EVAIK-LEEILDEPLTKPIDILDSAERVEDDEKTLEE-P---EDDPFEKEV 213 (319)
T ss_pred HHHHHCCCHHHHHHHHHCCCCCCH-----HHHHH-HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC-C---CCCHHHHHH
T ss_conf 999849869999999706886649-----99999-9998387323552022320125433457678-7---654156799
Q ss_pred HHHHHHHHHHHHCC
Q ss_conf 99999840222103
Q gi|254780316|r 425 LRILERLGFSVIGE 438 (805)
Q Consensus 425 ~~iL~~Lgf~v~~~ 438 (805)
...|++|||.+...
T Consensus 214 ~~~L~~iG~~v~~~ 227 (319)
T PRK04140 214 IEILSRLGFDVLPT 227 (319)
T ss_pred HHHHHHCCCEEEEE
T ss_conf 99999649646773
No 109
>pfam08853 DUF1823 Domain of unknown function (DUF1823). This presumed domain is functionally uncharacterized.
Probab=53.91 E-value=8 Score=17.96 Aligned_cols=57 Identities=19% Similarity=0.365 Sum_probs=44.1
Q ss_pred CCCCHHHHHHCCCCCHHHHHHHH-HHHHHHHHCCCCCCEEEE--CC-CCCCCCCHHHHHHH
Q ss_conf 04311333311345878999999-984022210345623664--03-45433440256767
Q gi|254780316|r 406 FMNSEVKRLSGIDVPIEDSLRIL-ERLGFSVIGEYDKFEVSV--PS-WRQDVEEKADLVEE 462 (805)
Q Consensus 406 l~~~~i~~ilG~~i~~~ei~~iL-~~Lgf~v~~~~~~~~V~v--Ps-~R~DI~~e~DLiEE 462 (805)
++.+-+-++|--++++.++.+.. ++||+......+.|.... |. ||.+--.+-|+|++
T Consensus 2 Ls~~~l~~Il~d~isD~~V~eLVW~~LgYr~~~~~~~W~~~~vtp~~W~e~ype~P~~I~~ 62 (116)
T pfam08853 2 LSRDLLWAILEDRISDRFVNELVWERLGYRYDASSDKWDAGPVTPSYWREEYPEPPEFIAS 62 (116)
T ss_pred CCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHC
T ss_conf 8789999999633589999999999978713776566778988869999867998358762
No 110
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=52.43 E-value=15 Score=15.98 Aligned_cols=147 Identities=16% Similarity=0.122 Sum_probs=80.9
Q ss_pred HHHHHHCCCCCH-HHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 133331134587-8999999984022210345623664034543344025676767653523346676554434576789
Q gi|254780316|r 410 EVKRLSGIDVPI-EDSLRILERLGFSVIGEYDKFEVSVPSWRQDVEEKADLVEEILRIYGVDQIKSEPLPLTQVEDKRNL 488 (805)
Q Consensus 410 ~i~~ilG~~i~~-~ei~~iL~~Lgf~v~~~~~~~~V~vPs~R~DI~~e~DLiEEIaRiyGYdnIp~~~l~~~~~~~~~~~ 488 (805)
.+.++-|+...+ ++....|+++..... |-+|. +++--+.-.++...-+-...-.++..
T Consensus 162 ~l~riygta~~~~~~l~~~l~~~eea~k----------rdHrk-----------lg~el~LF~~~~~~~~G~~~~~pkG~ 220 (589)
T COG0441 162 MLQRIYGTAFADKKELEAYLKRLEEAKK----------RDHRK-----------LGKELDLFSFSPEEGPGLPFWHPKGA 220 (589)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCC----------CCHHH-----------HHHHHCCEEECCCCCCCCEEECCCCC
T ss_conf 1067733355788999999766665027----------86476-----------87762143414445885069878846
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH----HHHHHCCCCCCCCC-CCCCCCCHHHCHHHHHHHHHCCCC
Q ss_conf 9889546789887877877402321004825765520----00000002467764-321015122110677643210158
Q gi|254780316|r 489 SLQQSRTRYVKRVLASRAMMEVVNWSFISKEQSVLFG----GGQRELEILNPISA-DMSNMRTSLLPGLLKATGRNVDRA 563 (805)
Q Consensus 489 ~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~----~~~~~i~l~NPlS~-e~s~lR~SLlp~LL~~~~~N~~r~ 563 (805)
...+.+.+.++..+...||+|+.|-.+.+.+.-+.-+ +.++.. -+.+. +.=.+|+---||.+.....-.+ .
T Consensus 221 ~ir~~le~y~~~~~~~~Gy~~V~TP~~~~~~l~~~SGH~~~y~e~mf---~~~~~~~~~~lKpmNCpgh~~ifk~~~~-S 296 (589)
T COG0441 221 TIRNLLEDYVRTKLRSYGYQEVKTPVLADLELWELSGHWDNYKEDMF---LTESDDREYALKPMNCPGHILIFKSGLR-S 296 (589)
T ss_pred CHHHHHHHHHHHHHHHCCCEEECCCEEEECCCCHHCCCHHHCCCCCE---EECCCCHHHEEEECCCHHHHHHHHCCCC-C
T ss_conf 69999999999898755852712873630000101120455136606---6213772330641078768999853786-1
Q ss_pred CCH--HHHHHHCCCCCCCCC
Q ss_conf 611--345430244447775
Q gi|254780316|r 564 IAD--FAIFEVSHVYENDTP 581 (805)
Q Consensus 564 ~~~--i~lFEiG~Vf~~~~~ 581 (805)
..+ +|++|.|.||....+
T Consensus 297 YR~LP~r~~E~g~v~R~E~S 316 (589)
T COG0441 297 YRELPLRLAEFGYVYRYEKS 316 (589)
T ss_pred EECCCHHHHHCCEEECCCCC
T ss_conf 10044043314422115676
No 111
>TIGR00501 met_pdase_II methionine aminopeptidase, type II; InterPro: IPR002468 Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of metallopeptidases belong to MEROPS peptidase family M24 (clan MG), subfamily M24A. Methionine aminopeptidase (3.4.11.18 from EC) (MAP) is responsible for the removal of the amino-terminal (initiator) methionine from nascent eukaryotic cytosolic and cytoplasmic prokaryotic proteins if the penultimate amino acid is small and uncharged. All MAP studied to date are monomeric proteins that require cobalt ions for activity. Two subfamilies of MAP enzymes are known to exist , . While being evolutionary related, they only share a limited amount of sequence similarity mostly clustered around the residues shown, in the Escherichia coli MAP , to be involved in cobalt-binding. The first family consists of enzymes from prokaryotes as well as eukaryotic MAP-1, while the second group (IPR002467 from INTERPRO) is made up of archaeal MAP and eukaryotic MAP-2 and includes proteins which do not seem to be MAP, but that are clearly evolutionary related such as mouse proliferation-associated protein 1 and fission yeast curved DNA-binding protein. ; GO: 0004239 methionyl aminopeptidase activity, 0006508 proteolysis.
Probab=51.03 E-value=8.9 Score=17.63 Aligned_cols=42 Identities=21% Similarity=0.313 Sum_probs=26.2
Q ss_pred HCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEECCCCCCHHHHHHHCCCCCCCCEE
Q ss_conf 401321039999989998608700000102233326886235543114554201124543200
Q gi|254780316|r 241 VGLRSISALVDITNYVSLDRGYPSHVFDASRISDVLTVRRACSGEKILALDNQEYDLSPDNVV 303 (805)
Q Consensus 241 ~Gir~inniVDitNyvmle~GqPlHafD~dki~~~i~vr~a~~~E~~~~Ld~~e~~L~~~~lv 303 (805)
-|++||+|+ +|+-||=| .+++++.|=..+++ +..+|+.+++|
T Consensus 172 Yg~kP~~NL----------~GHs~~rY---~~H~G~SiPn~~~~--------~~~~leeG~~~ 213 (327)
T TIGR00501 172 YGVKPISNL----------TGHSMARY---LLHAGLSIPNVKER--------DTTKLEEGDVV 213 (327)
T ss_pred CCCCCCCCC----------CCCCCCHH---HHCCCCCCEEEECC--------CCCEEECCCEE
T ss_conf 143342227----------35640015---43589500034279--------87451025788
No 112
>TIGR00442 hisS histidyl-tRNA synthetase; InterPro: IPR015807 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Histidyl-tRNA synthetase (6.1.1.21 from EC) is an alpha2 dimer that belongs to class IIa. Every completed genome includes a histidyl-tRNA synthetase. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and not demonstrated to act as histidyl-tRNA synthetases (see IPR004517 from INTERPRO). The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation, but these regulatory proteins are not orthologous.; GO: 0000166 nucleotide binding, 0004821 histidine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006427 histidyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=50.91 E-value=15 Score=15.96 Aligned_cols=28 Identities=25% Similarity=0.352 Sum_probs=15.3
Q ss_pred ECHHHHHHCCCC-CCEEEEEEEHHHHHHH
Q ss_conf 778999966879-9789999878762354
Q gi|254780316|r 670 FHPNILDFFGLS-NPICGFEVYLDSIPIS 697 (805)
Q Consensus 670 ihP~i~~~~~i~-~~v~~~EI~ld~L~~~ 697 (805)
-...+.+.|+=. .|..+|.+-++.+...
T Consensus 307 ~yd~l~~~~~~~~~~~~G~~~g~~r~~~~ 335 (446)
T TIGR00442 307 RYDNLVEEFGGPPTPAVGFAFGLERLINL 335 (446)
T ss_pred CHHHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 10125665067545410023308999998
No 113
>PRK07334 threonine dehydratase; Provisional
Probab=50.28 E-value=14 Score=16.19 Aligned_cols=124 Identities=12% Similarity=0.093 Sum_probs=66.7
Q ss_pred EEECCCCCCCCHHHCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 00025676310011135531201367269999715787888778876165401554413455301358899988875212
Q gi|254780316|r 303 VIASDGRIQSIAGIIGGKHAGCDDNTTDVLVEVALWDPINIARSGKNLGIITDSRYRFERGVDLQGMIPVLKHIVSLILS 382 (805)
Q Consensus 303 vI~d~~~~ialaGImGg~~s~v~~~T~~illEsA~F~p~~Ir~tar~l~l~TdaS~RfERgvd~~~~~~al~r~~~Li~e 382 (805)
+++.+..++++|+++.+. ..+...+--++|=-++.|+..+++-..|--....-..||.=-+ .-..-+|.+++.++.+
T Consensus 270 ~vvEpaGA~~lAAll~~~-~~~~gk~Vv~vlsGGNiD~~~l~~ii~r~l~~~gr~~~~~v~i--pd~PG~l~~~~~~i~~ 346 (399)
T PRK07334 270 TVVEGAGAAGLAALLAHP-ERFRGRKVGLVLCGGNIDTRLLANVLLRGLVRAGRLARLRVDI--RDRPGALAKVTALIGE 346 (399)
T ss_pred CCCCCCHHHHHHHHHHCH-HHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEEC--CCCCCHHHHHHHHHHH
T ss_conf 865771799999997381-6646981999968688698899999999888559989999988--8899679999999821
Q ss_pred CCCCCCCCCEEEEECCCCCCCEECCCCHHHHHHCCCCC----HHHHHHHHHHHHHHHH
Q ss_conf 33455565258741355431000043113333113458----7899999998402221
Q gi|254780316|r 383 LCGGTASDICIARNITYKPRKIVFMNSEVKRLSGIDVP----IEDSLRILERLGFSVI 436 (805)
Q Consensus 383 ~~gg~~~~~~~~~~~~~~~~~I~l~~~~i~~ilG~~i~----~~ei~~iL~~Lgf~v~ 436 (805)
. ++.+.++........ .+.....=.++++.. .+++.+-|+.-||.+.
T Consensus 347 ~-~ani~~i~h~r~~~~------~~~~~~~v~~~~Et~~~~h~~~l~~~L~~~Gy~~~ 397 (399)
T PRK07334 347 A-GANIIEVHHQRLFTT------LPAKGAELELVIETRDAAHIQEVMAALRAAGFVAR 397 (399)
T ss_pred C-CCCEEEEEEEECCCC------CCCCEEEEEEEEEECCHHHHHHHHHHHHHCCCCEE
T ss_conf 7-997699998871577------88773899999993999999999999997799856
No 114
>KOG1936 consensus
Probab=50.11 E-value=16 Score=15.73 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=15.2
Q ss_pred CCCEEEEEEEHHHHHHHHHCCC
Q ss_conf 9978999987876235452024
Q gi|254780316|r 681 SNPICGFEVYLDSIPISQKKRT 702 (805)
Q Consensus 681 ~~~v~~~EI~ld~L~~~~~~~~ 702 (805)
.-|+.++++-++.|...-..+.
T Consensus 389 ~vPcvG~S~GVeRiFsile~r~ 410 (518)
T KOG1936 389 KVPCVGQSVGVERIFSILEQRA 410 (518)
T ss_pred CCCCCCEEEHHHHHHHHHHHHH
T ss_conf 4874540400768999999988
No 115
>TIGR00268 TIGR00268 conserved hypothetical protein TIGR00268; InterPro: IPR005232 This family of conserved hypothetical proteins has no known function but is predicted to be part of the wider PP-loop superfamily ..
Probab=46.86 E-value=18 Score=15.39 Aligned_cols=180 Identities=19% Similarity=0.256 Sum_probs=90.5
Q ss_pred CCCEEEEEEECCCH-HHH---HHHHHHHCCCC-----HHHH--HHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEE
Q ss_conf 67269999715787-888---77887616540-----1554--4134553013588999888752123345556525874
Q gi|254780316|r 327 NTTDVLVEVALWDP-INI---ARSGKNLGIIT-----DSRY--RFERGVDLQGMIPVLKHIVSLILSLCGGTASDICIAR 395 (805)
Q Consensus 327 ~T~~illEsA~F~p-~~I---r~tar~l~l~T-----daS~--RfERgvd~~~~~~al~r~~~Li~e~~gg~~~~~~~~~ 395 (805)
+|=-|++-|-+.-| ..+ .+.|+.+|++- |.-. -|.+. +++.|-..=.++...+.+.+-..--.++.+|
T Consensus 42 ~~lait~~sP~~sp~~el~~A~~~A~~~g~~he~~~~d~~~n~~f~~N-~~~RCY~CK~~~~~~L~~~a~~~gy~~V~dG 120 (263)
T TIGR00268 42 EVLAITVVSPSISPRRELEDAKAIAKEIGVKHELVKIDKMANPNFRAN-VEERCYFCKKKVLSILVKLAEKRGYDVVVDG 120 (263)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 113578762775735448999999988083012110012368500168-8544415488899998999986399579823
Q ss_pred EC-----CCCC-----CCEECCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCC--CCCCEEEECCCC-CCCC--CHHHHH
Q ss_conf 13-----5543-----1000043113333113458789999999840222103--456236640345-4334--402567
Q gi|254780316|r 396 NI-----TYKP-----RKIVFMNSEVKRLSGIDVPIEDSLRILERLGFSVIGE--YDKFEVSVPSWR-QDVE--EKADLV 460 (805)
Q Consensus 396 ~~-----~~~~-----~~I~l~~~~i~~ilG~~i~~~ei~~iL~~Lgf~v~~~--~~~~~V~vPs~R-~DI~--~e~DLi 460 (805)
.. .+-| +...-. -.=+.-+.|++.+|..|=+.||+.+-.+ ...+.-.+|+-+ -|+. ..+|=+
T Consensus 121 tN~dDL~~~RPG~~A~~E~~g~---~SP~aef~I~K~eir~ia~~lg~~~~DKP~~~CL~sR~p~g~EI~~ekL~~v~ea 197 (263)
T TIGR00268 121 TNADDLEDHRPGLRAVKELNGV---YSPWAEFGITKKEIREIAKSLGLSFYDKPSEACLASRFPFGEEIDVEKLKKVDEA 197 (263)
T ss_pred CCCCCCCCCCCHHHHHHHCCCC---CCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf 4620002367513567660788---6872002568799999999748898888662102104768751048987769999
Q ss_pred H-HHHHHCCCCCCCCCC---CCCCCCCCCCCCC-HHHHHHH-HHHHHHHHHHHHHCC
Q ss_conf 6-767653523346676---5544345767899-8895467-898878778774023
Q gi|254780316|r 461 E-EILRIYGVDQIKSEP---LPLTQVEDKRNLS-LQQSRTR-YVKRVLASRAMMEVV 511 (805)
Q Consensus 461 E-EIaRiyGYdnIp~~~---l~~~~~~~~~~~~-~~~~~~~-~ir~~L~~~Gf~Ev~ 511 (805)
| ++.|.+|+..+--.- +..-.++. ..+. ..+.... .+++.|...||..|.
T Consensus 198 E~~~l~~~g~~qvRVR~y~nlAviE~~~-~~l~kl~~~~~~Ge~~~~~k~~GF~~V~ 253 (263)
T TIGR00268 198 EEIVLRRAGVKQVRVRNYDNLAVIEVAE-DELSKLLNEAEEGEVVDKLKDIGFRKVL 253 (263)
T ss_pred HHHHHHHHCCCCEEEECCCCEEEEEECH-HHHHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 9999998356605765267657996285-8899998631321799999744731577
No 116
>PRK07522 acetylornithine deacetylase; Provisional
Probab=46.17 E-value=19 Score=15.32 Aligned_cols=45 Identities=27% Similarity=0.299 Sum_probs=28.8
Q ss_pred CHHHHHHHCCCC-CCH-------HHHHHHHHHCCCEEEEEECCCCCCCEEEEE
Q ss_conf 867998847899-988-------999999874586042111246568748999
Q gi|254780316|r 4 TLSWLKDHLDTD-VSL-------EKICDTLTSIGLEVEKVDNREALSPFTIVK 48 (805)
Q Consensus 4 s~~WL~~~v~~~-~~~-------~~l~~~lt~~G~EVe~i~~~~~~~~vvvg~ 48 (805)
++.+|+++|.++ .|. +-|++.|...|||+|.++.......-+++.
T Consensus 7 ~v~ll~~LV~i~Svs~~~~~~~~~~l~~~l~~~G~~~~~~~~~~g~~~nlia~ 59 (387)
T PRK07522 7 SLDILERLVAFDTVSRDSNLALIEWVRDYLAAHGIESELIHDPEGTKANLFAT 59 (387)
T ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEE
T ss_conf 99999998099895998459999999999997799189997689983379999
No 117
>pfam08501 Shikimate_dh_N Shikimate dehydrogenase substrate binding domain. This domain is the substrate binding domain of shikimate dehydrogenase.
Probab=45.33 E-value=9.9 Score=17.29 Aligned_cols=48 Identities=17% Similarity=0.275 Sum_probs=31.4
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 4587899999998402221034562366403454334402567676765352
Q gi|254780316|r 418 DVPIEDSLRILERLGFSVIGEYDKFEVSVPSWRQDVEEKADLVEEILRIYGV 469 (805)
Q Consensus 418 ~i~~~ei~~iL~~Lgf~v~~~~~~~~V~vPs~R~DI~~e~DLiEEIaRiyGY 469 (805)
+++.++..+.+..|. ..+-.++.||+| |..++..-+|-+.|-||..|=
T Consensus 32 ~v~~~~l~~~~~~l~---~~~~~G~nVT~P-~K~~v~~~~d~~~~~A~~iGA 79 (83)
T pfam08501 32 EVPPDNLPEFVEGLR---ALGFRGLNVTIP-HKEAAIPLLDELSPEAKRIGA 79 (83)
T ss_pred ECCHHHHHHHHHHHH---CCCCCEEEECHH-HHHHHHHHHCCCCHHHHHHCC
T ss_conf 068889999999985---489987998889-999999984417999998588
No 118
>PRK12310 hydroxylamine reductase; Provisional
Probab=45.23 E-value=19 Score=15.22 Aligned_cols=12 Identities=25% Similarity=0.567 Sum_probs=5.3
Q ss_pred EEEEEECCCCCC
Q ss_conf 898763677998
Q gi|254780316|r 749 VFDVFQGKSLGE 760 (805)
Q Consensus 749 lfDvY~g~~i~~ 760 (805)
+-++|-|..+|.
T Consensus 386 vknI~lGPtlPa 397 (429)
T PRK12310 386 IKNIYIGPKLPE 397 (429)
T ss_pred CCCEECCCCCCC
T ss_conf 775000898742
No 119
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit; InterPro: IPR005969 Synonym: dark protochlorophyllide reductase Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. The light-independent (dark) form of protochlorophyllide reductase plays a key role in the ability of gymnosperms, algae, and photosynthetic bacteria to form chlorophyll in the dark. Genetic and sequence analyses have indicated that dark protochlorophyllide reductase consists of three protein subunits that exhibit significant sequence similarity to the three subunits of nitrogenase, which catalyzes the reductive formation of ammonia from dinitrogen. Dark protochlorophyllide reductase activity was shown to be dependent on the presence of all three subunits, ATP, and the reductant dithionite .; GO: 0016730 oxidoreductase activity acting on iron-sulfur proteins as donors, 0015995 chlorophyll biosynthetic process, 0019685 photosynthesis dark reaction.
Probab=44.22 E-value=5.3 Score=19.20 Aligned_cols=82 Identities=16% Similarity=0.279 Sum_probs=47.6
Q ss_pred HHCCCC--CHHHHHHHHHHHHHHHHCC---CC----------CCEEEECCCCC-CCCCHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 311345--8789999999840222103---45----------62366403454-33440256767676535233466765
Q gi|254780316|r 414 LSGIDV--PIEDSLRILERLGFSVIGE---YD----------KFEVSVPSWRQ-DVEEKADLVEEILRIYGVDQIKSEPL 477 (805)
Q Consensus 414 ilG~~i--~~~ei~~iL~~Lgf~v~~~---~~----------~~~V~vPs~R~-DI~~e~DLiEEIaRiyGYdnIp~~~l 477 (805)
-||++- +-.++++.|+.||.+|..- +. -| +.+=.||= =..-- +=..+-.|.+-|-.+|+
T Consensus 173 ~LGFH~r~D~~elrrlL~~LG~evN~v~P~GA~i~dL~~lp~Aw-~NI~pYrE~G~~aA----~YL~E~Fg~p~i~~~Pi 247 (562)
T TIGR01278 173 SLGFHHRHDLIELRRLLKTLGIEVNVVAPWGASIADLARLPAAW-LNIAPYREIGLMAA----EYLKEKFGIPYITETPI 247 (562)
T ss_pred CCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHH-CCCCCCHHHHHHHH----HHHHHHCCCCHHHCCCC
T ss_conf 33423210338999999658947989737998858898866621-22355255899999----99987458850121777
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 54434576789988954678988787787740
Q gi|254780316|r 478 PLTQVEDKRNLSLQQSRTRYVKRVLASRAMME 509 (805)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~ir~~L~~~Gf~E 509 (805)
.+....++.++|+..+...|+..
T Consensus 248 ---------Gv~~T~~f~~~i~~~l~~~G~d~ 270 (562)
T TIGR01278 248 ---------GVNATRRFIREIAALLNQAGADK 270 (562)
T ss_pred ---------CHHHHHHHHHHHHHHHHHCCCCC
T ss_conf ---------66889999999999998648875
No 120
>PRK05290 hydroxylamine reductase; Provisional
Probab=43.87 E-value=19 Score=15.22 Aligned_cols=14 Identities=21% Similarity=0.268 Sum_probs=7.5
Q ss_pred EEEEEEEECCCCCC
Q ss_conf 69898763677998
Q gi|254780316|r 747 VTVFDVFQGKSLGE 760 (805)
Q Consensus 747 v~lfDvY~g~~i~~ 760 (805)
.-+-++|-|..+|.
T Consensus 495 LGiknI~lGPtlPa 508 (540)
T PRK05290 495 LGVKNIRLGPTLPA 508 (540)
T ss_pred CCCCCEEECCCCCC
T ss_conf 38774244898853
No 121
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=43.14 E-value=21 Score=15.01 Aligned_cols=40 Identities=23% Similarity=0.354 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHHCCCEEEEEECC----CCCCCEEEEEEEEEEEC
Q ss_conf 98899999987458604211124----65687489999997565
Q gi|254780316|r 16 VSLEKICDTLTSIGLEVEKVDNR----EALSPFTIVKVLSVERN 55 (805)
Q Consensus 16 ~~~~~l~~~lt~~G~EVe~i~~~----~~~~~vvvg~v~~~~~h 55 (805)
.+-++|+.....+|.+.+-.... +..++||+|+|-+.++.
T Consensus 44 kteEEL~r~aeel~Vki~vtDdr~KVrk~~d~VvvGEV~s~~~~ 87 (293)
T COG4079 44 KTEEELARKAEELGVKITVTDDRNKVRKRNDGVVVGEVSSVERG 87 (293)
T ss_pred CCHHHHHHHHHHCCCEEEEECCHHHHHCCCCCEEEEEEECCCCC
T ss_conf 65899999999769779997164765223686799875203565
No 122
>TIGR01047 nspC carboxynorspermidine decarboxylase; InterPro: IPR005730 Carboxynorspermidine synthase, mediates the nicotinamide-nucleotide-linked reduction of the Schiff base H2N(CH2)3N = CHCH2CH(NH2)COOH. This is formed from L-aspartic beta-semialdehyde (ASA) and 1,3-diaminopropane (DAP) and is reduced to carboxynorspermidine [H2N(CH2)3NH(CH2)2CH(NH2)COOH], an intermediate in the novel pathway for norspermidine biosynthesis shown in Vibrio alginolyticus.; GO: 0016830 carbon-carbon lyase activity, 0045312 nor-spermidine biosynthetic process.
Probab=42.34 E-value=8.5 Score=17.77 Aligned_cols=72 Identities=25% Similarity=0.331 Sum_probs=39.6
Q ss_pred CCCEEEECCCCC-CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH--HHH-HHHHHHHHCCCCCC
Q ss_conf 562366403454-33440256767676535233466765544345767899889546789--887-87787740232100
Q gi|254780316|r 440 DKFEVSVPSWRQ-DVEEKADLVEEILRIYGVDQIKSEPLPLTQVEDKRNLSLQQSRTRYV--KRV-LASRAMMEVVNWSF 515 (805)
Q Consensus 440 ~~~~V~vPs~R~-DI~~e~DLiEEIaRiyGYdnIp~~~l~~~~~~~~~~~~~~~~~~~~i--r~~-L~~~Gf~Ev~tysl 515 (805)
....|..|.||. |+..-+||+.-|. ||.+ .+. .+++.++ |+. |-.+|..++.-===
T Consensus 77 kE~HvYsPay~e~d~~~I~~La~~i~----FNS~-------~Q~---------~~yr~~~~~K~~qlenlG~~~~k~GLR 136 (403)
T TIGR01047 77 KEVHVYSPAYKEEDLPEIIPLADHII----FNSL-------AQW---------ARYREKVEDKNSQLENLGLREVKLGLR 136 (403)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHHHH----HCCH-------HHH---------HHHHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 66687158888645888987741334----1037-------899---------999999999999888559750224123
Q ss_pred CCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 4825765520000000024677
Q gi|254780316|r 516 ISKEQSVLFGGGQRELEILNPI 537 (805)
Q Consensus 516 ~s~~~~~~~~~~~~~i~l~NPl 537 (805)
++++.. .-.-.|.||=
T Consensus 137 INPeyS------~v~~dLYNPc 152 (403)
T TIGR01047 137 INPEYS------EVETDLYNPC 152 (403)
T ss_pred ECCCCC------CCCHHHCCCC
T ss_conf 467446------5661320878
No 123
>cd01914 HCP Hybrid cluster protein (HCP), formerly known as prismane, is thought to play a role in nitrogen metabolism but its specific function is unknown. HCP has three structural domains, an N-terminal alpha-helical domain, and two similar domains comprising a central beta-sheet flanked by alpha-helices. HCP contains two iron-sulfur clusters, one of which is a [Fe4-S4] cubane cluster similar to that of carbon monoxide dehydrogenase (CODH). The second cluster, referred to as the hybrid cluster, is a hybrid [Fe4-S2-O2] center located at the interface of the three domains. Although the hybrid cluster is buried within the protein, it is accessible through a large hydrophobic cavity.
Probab=42.26 E-value=21 Score=14.92 Aligned_cols=10 Identities=20% Similarity=0.205 Sum_probs=3.4
Q ss_pred HHHHHHHHHH
Q ss_conf 5557899987
Q gi|254780316|r 169 IGVRGIALDL 178 (805)
Q Consensus 169 ls~~GiAREl 178 (805)
-.+++++-|.
T Consensus 74 ~~ll~l~l~~ 83 (423)
T cd01914 74 DELLALALET 83 (423)
T ss_pred HHHHHHHHHH
T ss_conf 9999999997
No 124
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase; InterPro: IPR006269 These sequences describe 2-dehydro-3-deoxyphosphooctonate aldolase. Alternate names include 3-deoxy-d-manno-octulosonic acid 8-phosphate and KDO-8 phosphate synthetase. It catalyzes the aldol condensation of phosphoenolpyruvate with D-arabinose 5-phosphate. phosphoenolpyruvate + D-arabinose 5-phosphate + H_2O = 2-dehydro-3-deoxy-D-octonate 8-phosphate + phosphate In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide. ; GO: 0008676 3-deoxy-8-phosphooctulonate synthase activity, 0008152 metabolic process, 0005737 cytoplasm.
Probab=42.23 E-value=16 Score=15.84 Aligned_cols=25 Identities=32% Similarity=0.299 Sum_probs=14.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 7857665557899987764115666
Q gi|254780316|r 163 PNRSDCIGVRGIALDLVAAGLGKLK 187 (805)
Q Consensus 163 pNR~D~ls~~GiARElaa~~~~~l~ 187 (805)
+||.=.-|.+|.--|=+-...+++|
T Consensus 46 ANRtS~~SfRGpGle~GL~iL~kvK 70 (279)
T TIGR01362 46 ANRTSINSFRGPGLEEGLKILQKVK 70 (279)
T ss_pred HHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 2321102436888789999999865
No 125
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=42.08 E-value=22 Score=14.90 Aligned_cols=12 Identities=25% Similarity=0.462 Sum_probs=8.3
Q ss_pred CEEEEECCCCCE
Q ss_conf 089997599957
Q gi|254780316|r 61 AILRIDTGKHQE 72 (805)
Q Consensus 61 ~v~~Vd~g~~~~ 72 (805)
.+.-+|+|+.+.
T Consensus 7 ~iv~LDIGTskV 18 (418)
T COG0849 7 LIVGLDIGTSKV 18 (418)
T ss_pred EEEEEECCCCEE
T ss_conf 499997267479
No 126
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; InterPro: IPR006276 This group represents cobalamin-independent methionine synthase. A family of uncharacterised archaeal proteins having substantial homology to the C-terminal region of this family, are not included in this group, though they are contained in a larger family of vitamin-B12 independent methionine synthase.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0009086 methionine biosynthetic process.
Probab=41.91 E-value=14 Score=16.27 Aligned_cols=93 Identities=24% Similarity=0.322 Sum_probs=58.1
Q ss_pred HCCCCCHHHHH--HHHHHHHHHHHCCCCCCEEEE----CCCCCCCCCHHHHHHHHHHHCCCCCC---CCCCCCCCCCCCC
Q ss_conf 11345878999--999984022210345623664----03454334402567676765352334---6676554434576
Q gi|254780316|r 415 SGIDVPIEDSL--RILERLGFSVIGEYDKFEVSV----PSWRQDVEEKADLVEEILRIYGVDQI---KSEPLPLTQVEDK 485 (805)
Q Consensus 415 lG~~i~~~ei~--~iL~~Lgf~v~~~~~~~~V~v----Ps~R~DI~~e~DLiEEIaRiyGYdnI---p~~~l~~~~~~~~ 485 (805)
||+|+-...-. .-+..-||.-. ..+..-| =-||.|+.-.-++++.+.-..|-|+| ||++| .+.+
T Consensus 278 iglDfV~~~~~NL~~~~~~~~~~d---k~L~aGvIDGRNiW~~DL~a~l~~~~~l~~~~~~~~l~~~~SCSL----LHvP 350 (778)
T TIGR01371 278 IGLDFVHGKAQNLLELAKAGFPED---KVLSAGVIDGRNIWRADLEASLALLKKLLAHLGKDRLVVSTSCSL----LHVP 350 (778)
T ss_pred EEEEEECCCCCCHHHHHHCCCCCC---CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC----CCCC
T ss_conf 543552371013698975257656---568876775731317889999999999998640886898268751----0676
Q ss_pred CCCCHHHHHHHHHHHHHH--HHHHHHCCCCC
Q ss_conf 789988954678988787--78774023210
Q gi|254780316|r 486 RNLSLQQSRTRYVKRVLA--SRAMMEVVNWS 514 (805)
Q Consensus 486 ~~~~~~~~~~~~ir~~L~--~~Gf~Ev~tys 514 (805)
-.+..+.++...+|+.|+ ..-..|+....
T Consensus 351 v~L~~E~~LD~~~~~~LAFA~eKl~El~~L~ 381 (778)
T TIGR01371 351 VDLELETKLDPELKSWLAFAKEKLEELKVLK 381 (778)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 2444443587678755436888999999999
No 127
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component; InterPro: IPR011297 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) , is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC . These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose , , , . This entry represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (hydroquinone-O-beta-D-glucopyranoside) . These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system.
Probab=41.72 E-value=12 Score=16.65 Aligned_cols=15 Identities=33% Similarity=0.403 Sum_probs=7.0
Q ss_pred CCCHHHHHHH-HHHHC
Q ss_conf 5787888778-87616
Q gi|254780316|r 337 LWDPINIARS-GKNLG 351 (805)
Q Consensus 337 ~F~p~~Ir~t-ar~l~ 351 (805)
||-|..+.-| |||++
T Consensus 161 YFlPi~la~saAk~Fk 176 (660)
T TIGR01995 161 YFLPILLAISAAKRFK 176 (660)
T ss_pred HHHHHHHHHHHHHHHC
T ss_conf 9889999976557727
No 128
>KOG1885 consensus
Probab=39.57 E-value=12 Score=16.73 Aligned_cols=74 Identities=23% Similarity=0.360 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH--HHHCCCCCCCCCCC-CCCCCHHHCHHH-HHHHHHCCCCCCHHH
Q ss_conf 54678988787787740232100482576552000--00000246776432-101512211067-764321015861134
Q gi|254780316|r 493 SRTRYVKRVLASRAMMEVVNWSFISKEQSVLFGGG--QRELEILNPISADM-SNMRTSLLPGLL-KATGRNVDRAIADFA 568 (805)
Q Consensus 493 ~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~--~~~i~l~NPlS~e~-s~lR~SLlp~LL-~~~~~N~~r~~~~i~ 568 (805)
+....||.+|-+.||-||-|--+... .++. +..|.--|-+ ++ =+||- .|-|. +-+. =-|.. |
T Consensus 230 kII~~iRkfld~rgFlEVETPmmn~i-----aGGA~AkPFIT~hndl--dm~LylRi--APEL~lK~Lv---VGGld--r 295 (560)
T KOG1885 230 KIISYIRKFLDSRGFLEVETPMMNMI-----AGGATAKPFITHHNDL--DMDLYLRI--APELYLKMLV---VGGLD--R 295 (560)
T ss_pred HHHHHHHHHHHHCCCEEECCHHHCCC-----CCCCCCCCEEECCCCC--CCCEEEEE--CHHHHHHHHH---HCCHH--H
T ss_conf 99999999865449568444655254-----6863257604314556--75514563--6599999898---60178--9
Q ss_pred HHHHCCCCCCCC
Q ss_conf 543024444777
Q gi|254780316|r 569 IFEVSHVYENDT 580 (805)
Q Consensus 569 lFEiG~Vf~~~~ 580 (805)
+||||++|+++.
T Consensus 296 VYEIGr~FRNEG 307 (560)
T KOG1885 296 VYEIGRQFRNEG 307 (560)
T ss_pred HHHHHHHHHHCC
T ss_conf 999878763057
No 129
>COG2877 KdsA 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase [Cell envelope biogenesis, outer membrane]
Probab=39.51 E-value=18 Score=15.45 Aligned_cols=33 Identities=27% Similarity=0.196 Sum_probs=19.9
Q ss_pred EEEEEE-ECCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 599987-087857665557899987764115666
Q gi|254780316|r 155 PIIDVS-LTPNRSDCIGVRGIALDLVAAGLGKLK 187 (805)
Q Consensus 155 ~i~ei~-iTpNR~D~ls~~GiARElaa~~~~~l~ 187 (805)
++|.-+ =-+||.-.-|++|.--|-+--...++|
T Consensus 51 ~vfKsSfDKANRsSi~s~RGpGLeeglki~~~vK 84 (279)
T COG2877 51 YVFKSSFDKANRSSIHSYRGPGLEEGLKILQEVK 84 (279)
T ss_pred EEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 6986243423333211246877888999999999
No 130
>cd01982 Chlide_reductase_Z Chlide_reductase_Z : Z subunit of chlorophyllide (chlide) reductase (BchZ). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=38.29 E-value=12 Score=16.78 Aligned_cols=23 Identities=17% Similarity=0.368 Sum_probs=16.5
Q ss_pred HCCCCC--HHHHHHHHHHHHHHHHC
Q ss_conf 113458--78999999984022210
Q gi|254780316|r 415 SGIDVP--IEDSLRILERLGFSVIG 437 (805)
Q Consensus 415 lG~~i~--~~ei~~iL~~Lgf~v~~ 437 (805)
||++-. -.|++++|+.||.++..
T Consensus 166 lgF~~r~D~~EikRLL~~lGi~VN~ 190 (412)
T cd01982 166 GCFNSPSDLAEVKRLVTGIGAEVNH 190 (412)
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 7778878899999999976984789
No 131
>TIGR01059 gyrB DNA gyrase, B subunit; InterPro: IPR011557 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis , . DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA . Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils . Topoisomerase II (called gyrase in bacteria) primarily introduces negative supercoils into DNA. In bacteria, topoisomerase II consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. In most eukaryotes, topoisomerase II consists of a single polypeptide, where the N- and C-terminal regions correspond to gyrB and gyrA, respectively. This entry represents the B subunit (gyrB) as found predominantly in bacteria, but does not include the topoisomerase II enzymes composed of a single polypeptide, as are found in most eukaryotes. GyrB has two functional domains: an N-terminal ATPase and a C-terminal responsible for subunit interactions, the latter differing between subunit B and single polypeptide topoisomerase II . More information about this protein can be found at Protein of the Month: DNA Topoisomerase .; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome.
Probab=37.61 E-value=25 Score=14.44 Aligned_cols=115 Identities=16% Similarity=0.220 Sum_probs=70.6
Q ss_pred CCCC-CCCCCEEEE---ECCCCCCCEECCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCC-CC--CCE---EEE------
Q ss_conf 3345-556525874---1355431000043113333113458789999999840222103-45--623---664------
Q gi|254780316|r 383 LCGG-TASDICIAR---NITYKPRKIVFMNSEVKRLSGIDVPIEDSLRILERLGFSVIGE-YD--KFE---VSV------ 446 (805)
Q Consensus 383 ~~gg-~~~~~~~~~---~~~~~~~~I~l~~~~i~~ilG~~i~~~ei~~iL~~Lgf~v~~~-~~--~~~---V~v------ 446 (805)
-||| .+...-+-. -.|..-|.+.+-.+++.|+|. .+||..+...|||.+..+ -+ .+. |.+
T Consensus 441 SAGGcSAKqGRDR~fQAILPLrGKILNVEKaR~dK~l~----N~Ei~~~ItALG~GI~~d~Fdl~KLRYHKIIIMTDADV 516 (818)
T TIGR01059 441 SAGGCSAKQGRDRKFQAILPLRGKILNVEKARLDKILS----NDEIQAIITALGCGIGKDEFDLEKLRYHKIIIMTDADV 516 (818)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEECEECCCHHHHHH----HHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCC
T ss_conf 27776544467865434233245521000120455321----25338889973688676678723246443688406787
Q ss_pred -----------CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf -----------0345433440256767676535233466765544345767899889546789887877877402321
Q gi|254780316|r 447 -----------PSWRQDVEEKADLVEEILRIYGVDQIKSEPLPLTQVEDKRNLSLQQSRTRYVKRVLASRAMMEVVNW 513 (805)
Q Consensus 447 -----------Ps~R~DI~~e~DLiEEIaRiyGYdnIp~~~l~~~~~~~~~~~~~~~~~~~~ir~~L~~~Gf~Ev~ty 513 (805)
=.||+ --+|||. ||==|. . ||+-.+...+.. ..-+-.+.+-++|...|.+++.=.
T Consensus 517 DGSHIRTLLLTFFYR~----M~~LIE~-----GyvYIA-q-PPLYKvk~gk~~-~Yikdd~e~d~yll~~~~~~~~l~ 582 (818)
T TIGR01059 517 DGSHIRTLLLTFFYRY----MRPLIEN-----GYVYIA-Q-PPLYKVKKGKKE-RYIKDDKELDHYLLNLGINEAELV 582 (818)
T ss_pred CHHHHHHHHHHHHHHH----HHHHHHC-----CCEEEE-C-CCCHHHHCCCCC-CCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf 8368999999988740----1588745-----872650-7-860212046551-122277899889887532420265
No 132
>KOG0578 consensus
Probab=37.28 E-value=25 Score=14.39 Aligned_cols=11 Identities=36% Similarity=0.398 Sum_probs=3.7
Q ss_pred HHHHHHHHHCC
Q ss_conf 56767676535
Q gi|254780316|r 458 DLVEEILRIYG 468 (805)
Q Consensus 458 DLiEEIaRiyG 468 (805)
=|+.||.++-|
T Consensus 316 LilnEi~Vm~~ 326 (550)
T KOG0578 316 LLLNEILVMRD 326 (550)
T ss_pred HHHHHHHHHHH
T ss_conf 35779999874
No 133
>pfam05919 Mitovir_RNA_pol Mitovirus RNA-dependent RNA polymerase. This family consists of several Mitovirus RNA-dependent RNA polymerase proteins. The family also contains fragment matches in the mitochondria of Arabidopsis thaliana.
Probab=37.12 E-value=0.75 Score=25.25 Aligned_cols=72 Identities=17% Similarity=0.174 Sum_probs=39.9
Q ss_pred HHHHHCCCEEEECC---CCCCCEEEEEECCCCCCHHHHHHHCCCCCCCCEEEECCCCCCCCHHHCCCCCCCCCCCCC
Q ss_conf 99860870000010---223332688623554311455420112454320000256763100111355312013672
Q gi|254780316|r 256 VSLDRGYPSHVFDA---SRISDVLTVRRACSGEKILALDNQEYDLSPDNVVIASDGRIQSIAGIIGGKHAGCDDNTT 329 (805)
Q Consensus 256 vmle~GqPlHafD~---dki~~~i~vr~a~~~E~~~~Ld~~e~~L~~~~lvI~d~~~~ialaGImGg~~s~v~~~T~ 329 (805)
|.+..||||-||-- =.+.-.++|..|..-- ..-.-..|.+-.+|+||+|++-+..--.||.-..-+|+.+-+
T Consensus 200 ~~y~~GQPmGa~sSwa~~aLtHH~iV~~~a~~~--~~~~f~~Y~iLGDDIvi~~~~vA~~Y~~iM~~LGVeIS~sKS 274 (495)
T pfam05919 200 LRYSVGQPMGAYSSWAMLALTHHLIVQVAAFRA--GKSRFTDYIILGDDIVIANDKVAKKYLEIMTDLGVEISLSKS 274 (495)
T ss_pred EEEECCCCCHHHCCHHHHHHHHHHHHHHHHHHH--CCCCCCCEEEECCCEEECCHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 588468856001127999877899999999984--578777638853848984869999999999982811224754
No 134
>KOG2713 consensus
Probab=36.00 E-value=27 Score=14.26 Aligned_cols=16 Identities=31% Similarity=0.308 Sum_probs=5.8
Q ss_pred CHHHHHHHH-HHHHHHC
Q ss_conf 688875311-1111101
Q gi|254780316|r 617 DLFDAKADA-LSVIEPF 632 (805)
Q Consensus 617 df~dlKg~v-~~ll~~l 632 (805)
+..+.|-.+ +++++.+
T Consensus 283 ~~~~fK~~vaeAvie~L 299 (347)
T KOG2713 283 STADFKDNVAEAVIEHL 299 (347)
T ss_pred CHHHHHHHHHHHHHHHH
T ss_conf 77777888999999974
No 135
>TIGR02628 fuculo_kin_coli L-fuculokinase; InterPro: IPR013450 Proteins in this entry are L-fuculokinases from the clade that includes the Escherichia coli enzyme P11553 from SWISSPROT. They catalyze the second step in fucose catabolism and belong to the FGGY family of carbohydrate kinases. These enzymes are encoded by the kinase (K) gene of the fucose (fuc) operon.; GO: 0008737 L-fuculokinase activity, 0005975 carbohydrate metabolic process.
Probab=35.29 E-value=19 Score=15.34 Aligned_cols=17 Identities=12% Similarity=0.327 Sum_probs=12.4
Q ss_pred HHHHHHHCCCCCCCCCCC
Q ss_conf 112332011232245566
Q gi|254780316|r 213 LCKGFAMCCVKGVRNNVA 230 (805)
Q Consensus 213 ~c~~y~~~~i~~v~~~~S 230 (805)
+||| +..|++||...-+
T Consensus 105 KCPR-T~pVM~n~e~~ld 121 (473)
T TIGR02628 105 KCPR-TVPVMENVERELD 121 (473)
T ss_pred CCCC-CCHHHHHHHHHHH
T ss_conf 6888-6256888898865
No 136
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=35.18 E-value=27 Score=14.17 Aligned_cols=44 Identities=20% Similarity=0.351 Sum_probs=29.3
Q ss_pred HHHHHHHCCCCC-C-----H----HHHHHHHHHCCCEEEEEECCCCCCCEEEEE
Q ss_conf 679988478999-8-----8----999999874586042111246568748999
Q gi|254780316|r 5 LSWLKDHLDTDV-S-----L----EKICDTLTSIGLEVEKVDNREALSPFTIVK 48 (805)
Q Consensus 5 ~~WL~~~v~~~~-~-----~----~~l~~~lt~~G~EVe~i~~~~~~~~vvvg~ 48 (805)
+.||+++|+++- | + +-++++|..+|++||-+.......+.+++.
T Consensus 48 l~~l~~lVni~Sgt~~~~gv~~v~~~~~~~l~~~G~~v~~~~~~~~~g~~l~a~ 101 (418)
T PRK06133 48 LDTLRELVSIESGSGDAEGLKQVAALLAERLKALGATVELVPATPSAGDMVVAT 101 (418)
T ss_pred HHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEE
T ss_conf 999998735078999768999999999999997799589964788868879999
No 137
>cd04750 Commd2 COMM_Domain containing protein 2. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.
Probab=34.96 E-value=24 Score=14.58 Aligned_cols=96 Identities=15% Similarity=0.128 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCEECCCCHHHHHHCCC
Q ss_conf 87888778876165401554413455301358899988875212334555652587413554310000431133331134
Q gi|254780316|r 339 DPINIARSGKNLGIITDSRYRFERGVDLQGMIPVLKHIVSLILSLCGGTASDICIARNITYKPRKIVFMNSEVKRLSGID 418 (805)
Q Consensus 339 ~p~~Ir~tar~l~l~TdaS~RfERgvd~~~~~~al~r~~~Li~e~~gg~~~~~~~~~~~~~~~~~I~l~~~~i~~ilG~~ 418 (805)
||......|++|+ |+++.+..+..-++.|+.+-|--.+++.... ..-..+.|+.+...-++..-
T Consensus 15 n~k~y~~aA~kl~------------v~~~~Vq~aVe~L~~Ll~es~K~~l~e~df~----~sl~~lgf~ee~~~~L~q~y 78 (166)
T cd04750 15 NQKKYEGAARKLE------------VEVETVQHGVEALVYLLIESTKLKLSERDFQ----DSIEFLGFSDDLNEILLQLY 78 (166)
T ss_pred CHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHHCCHHHHH----HHHHHCCCCHHHHHHHHHHH
T ss_conf 7679999999939------------9989999999999999999998717788899----88872688879999999999
Q ss_pred C-CHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCH
Q ss_conf 5-8789999999840222103456236640345433440
Q gi|254780316|r 419 V-PIEDSLRILERLGFSVIGEYDKFEVSVPSWRQDVEEK 456 (805)
Q Consensus 419 i-~~~ei~~iL~~Lgf~v~~~~~~~~V~vPs~R~DI~~e 456 (805)
- ...++..+|..++...- . ..==-||.|++.-
T Consensus 79 ~~~r~~i~~~L~~~~~~lp-~-----y~nLeWRlDvqva 111 (166)
T cd04750 79 ESNRKEIRNILKELSPDLP-H-----YHNLEWRLDVQIA 111 (166)
T ss_pred HHHHHHHHHHHHHCCCCCC-C-----CCCCCEEEEHHHH
T ss_conf 9989999999997598852-0-----0355401110105
No 138
>COG3971 2-keto-4-pentenoate hydratase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=34.56 E-value=28 Score=14.10 Aligned_cols=13 Identities=23% Similarity=0.317 Sum_probs=4.3
Q ss_pred CCCCCCCCHHHHH
Q ss_conf 2245566377878
Q gi|254780316|r 224 GVRNNVAPNWMRQ 236 (805)
Q Consensus 224 ~v~~~~SP~wl~~ 236 (805)
|.|++.++.|||.
T Consensus 59 G~Kvglts~a~q~ 71 (264)
T COG3971 59 GHKVGLTSPAMQQ 71 (264)
T ss_pred EEEECCCCHHHHH
T ss_conf 2560568999998
No 139
>KOG0736 consensus
Probab=34.12 E-value=11 Score=17.02 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=13.9
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 331134587899999998402221
Q gi|254780316|r 413 RLSGIDVPIEDSLRILERLGFSVI 436 (805)
Q Consensus 413 ~ilG~~i~~~ei~~iL~~Lgf~v~ 436 (805)
.++|++=...+..++++.+.+.++
T Consensus 500 dvl~id~dgged~rl~~~i~~~ls 523 (953)
T KOG0736 500 DVLGIDQDGGEDARLLKVIRHLLS 523 (953)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 245533777442779999999972
No 140
>pfam02027 RolB_RolC RolB/RolC glucosidase family. This family of proteins includes RolB and RolC. RolC releases cytokinins from glucoside conjugates. Whereas RolB hydrolyses indole glucosides.
Probab=33.66 E-value=29 Score=14.02 Aligned_cols=40 Identities=18% Similarity=0.232 Sum_probs=25.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCH
Q ss_conf 3458789999999840222103456236640345433440
Q gi|254780316|r 417 IDVPIEDSLRILERLGFSVIGEYDKFEVSVPSWRQDVEEK 456 (805)
Q Consensus 417 ~~i~~~ei~~iL~~Lgf~v~~~~~~~~V~vPs~R~DI~~e 456 (805)
+-.+.+++..++++--+......+-+-+++|+||.|++..
T Consensus 77 VY~s~~~~~~~~~~~~l~~~~~~g~vattlpPY~~dvs~~ 116 (189)
T pfam02027 77 VYVSRETMQQCVEGRSLPSNSSSGLVATTLPPYREDVSLA 116 (189)
T ss_pred EEECHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCHH
T ss_conf 9918999999985897300477887898569755675699
No 141
>PRK08639 threonine dehydratase; Validated
Probab=32.79 E-value=30 Score=13.91 Aligned_cols=293 Identities=16% Similarity=0.171 Sum_probs=132.8
Q ss_pred CCCCCCHHHHHHHCCCCCCCCCEEEECCCCCCC-CCHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 865054541188769985477507816888888-4558870888559998708785766555789998776411566665
Q gi|254780316|r 111 GIESTGMMCSEKELMLSDDSASIMELPIDAPVG-GRLSDYLELSDPIIDVSLTPNRSDCIGVRGIALDLVAAGLGKLKEI 189 (805)
Q Consensus 111 Gv~S~GMlCS~~ELgl~~~~~gI~~l~~~~~~G-~~~~~~l~l~D~i~ei~iTpNR~D~ls~~GiARElaa~~~~~l~~~ 189 (805)
|-.-+|+-.+++.||+. ..+++|+.+|.- ....+.+| -.++|+-+..+- .--.+-.|++++.-.+..+-+|
T Consensus 82 GNHaqgvA~aa~~lgi~----a~IvmP~~tp~~Ki~~~r~~G--a~~veV~l~G~~--~dea~~~A~~~a~~~g~~~i~p 153 (418)
T PRK08639 82 GNHAQGVAYACRHLGIP----GVIFMPVTTPKQKIDQVRFFG--GEFVEIVLVGDT--FDDSAAAAQEYAEETGATFIPP 153 (418)
T ss_pred CHHHHHHHHHHHHHCCC----EEEEECCCCHHHHHHHHHHCC--CCEEEEEECCCC--HHHHHHHHHHHHHHCCCCCCCC
T ss_conf 58999999999983996----899936667599999999629--966999971898--7999999999999709714587
Q ss_pred CCCCCCCCCC---CCCEEEEEEE---CCCHHHHHHHCCCCCCCCCCCCHHHHHH---HHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 5456677777---7741589840---7311123320112322455663778788---88640132103999998999860
Q gi|254780316|r 190 NISCPLSSES---IPLEIKFDLD---DSSLCKGFAMCCVKGVRNNVAPNWMRQR---LKAVGLRSISALVDITNYVSLDR 260 (805)
Q Consensus 190 ~~~~~~~~~~---~~~~i~v~i~---~~~~c~~y~~~~i~~v~~~~SP~wl~~r---L~~~Gir~inniVDitNyvmle~ 260 (805)
+..+....+ ...++--... |.-.||.=.|..+.|+- .|++.. ..-+|+-|-+. -+=+--++.
T Consensus 154 -fdd~~vIaGqGTiglEI~eq~~~~~D~vvvpvGGGGLiaGia-----~~lK~~~P~ikIiGVEp~~a---~~m~~Sl~~ 224 (418)
T PRK08639 154 -FDDPDVIAGQGTVAVEILEQLEEEPDYVFVPVGGGGLISGVT-----TYLKEVSPKTKVIGVEPAGA---ASMKAALEA 224 (418)
T ss_pred -CCCCCHHHCCHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHH-----HHHHHHCCCCEEEEEEECCC---HHHHHHHHC
T ss_conf -788344632146999999856887888999618736899999-----99985099971899815897---689999985
Q ss_pred CCCEEEECCCCCCCEEEEEECCCCC-CHHHH----------HHHCC-----CCCCCCEEEECCCCCCCCHHHCCCCCCCC
Q ss_conf 8700000102233326886235543-11455----------42011-----24543200002567631001113553120
Q gi|254780316|r 261 GYPSHVFDASRISDVLTVRRACSGE-KILAL----------DNQEY-----DLSPDNVVIASDGRIQSIAGIIGGKHAGC 324 (805)
Q Consensus 261 GqPlHafD~dki~~~i~vr~a~~~E-~~~~L----------d~~e~-----~L~~~~lvI~d~~~~ialaGImGg~~s~v 324 (805)
|.|...-..+++.+.+.|+.. |+ +|..+ ++.+. .|-+..=+|+...+++++|+++... ..+
T Consensus 225 g~~v~~~~~~t~aDG~av~~~--G~~tf~i~~~~vd~iv~V~e~eI~~Am~~l~e~~k~vvEpaGA~~lAal~~~~-~~~ 301 (418)
T PRK08639 225 GKPVTLEKIDKFVDGAAVARV--GDLTFEILKDVVDDVILVPEGAVCTTILELYNKEGIVAEPAGALSIAALDEYK-DEI 301 (418)
T ss_pred CCCCCCCCCCCCCCCCCCCCC--CHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCH-HHH
T ss_conf 996006876761133433545--56789999862897077289999999999999659822452899999998461-552
Q ss_pred CCCCCEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCC--CCCCEEEEECCCCCC
Q ss_conf 136726999971578788877887616540155441345530135889998887521233455--565258741355431
Q gi|254780316|r 325 DDNTTDVLVEVALWDPINIARSGKNLGIITDSRYRFERGVDLQGMIPVLKHIVSLILSLCGGT--ASDICIARNITYKPR 402 (805)
Q Consensus 325 ~~~T~~illEsA~F~p~~Ir~tar~l~l~TdaS~RfERgvd~~~~~~al~r~~~Li~e~~gg~--~~~~~~~~~~~~~~~ 402 (805)
...+--+++=-++.|....+.-..|--+...--++|- +...-..=+|.+++..+ .|.. +..+ .|.... .+
T Consensus 302 ~gk~Vv~ilsGgNiD~~~l~~i~er~l~~~gr~~~~~--v~~pd~PG~l~~f~~~~---lg~~~~It~f--~y~r~~-~~ 373 (418)
T PRK08639 302 KGKTVVCVISGGNNDIERMPEIKERSLRYEGLKHYFI--VNFPQRPGALREFLDDV---LGPDDDITRF--EYLKKN-NR 373 (418)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEE--EECCCCCCHHHHHHHHH---CCCCCCEEEE--EEEECC-CC
T ss_conf 6980999981588898899999999878629869999--97899997699999997---2999856899--878626-88
Q ss_pred CEECCCCHHHHHHCCCCCH----HHHHHHHHHHHHHHHC
Q ss_conf 0000431133331134587----8999999984022210
Q gi|254780316|r 403 KIVFMNSEVKRLSGIDVPI----EDSLRILERLGFSVIG 437 (805)
Q Consensus 403 ~I~l~~~~i~~ilG~~i~~----~ei~~iL~~Lgf~v~~ 437 (805)
+.-.-+.|+++.. +++.+.|+..||++..
T Consensus 374 ------~~~~v~vgie~~~~~~~~~l~~~l~~~g~~~~~ 406 (418)
T PRK08639 374 ------ETGPVLIGIELKDAEDYDGLLARMEAFGPSYID 406 (418)
T ss_pred ------CCEEEEEEEEECCHHHHHHHHHHHHHCCCCEEE
T ss_conf ------704599999959877899999999977997698
No 142
>COG1724 Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only]
Probab=32.55 E-value=30 Score=13.88 Aligned_cols=33 Identities=24% Similarity=0.418 Sum_probs=19.5
Q ss_pred CCCHHHHHHHHHHHHHHHHCCC---------CCCEEEECCCC
Q ss_conf 4587899999998402221034---------56236640345
Q gi|254780316|r 418 DVPIEDSLRILERLGFSVIGEY---------DKFEVSVPSWR 450 (805)
Q Consensus 418 ~i~~~ei~~iL~~Lgf~v~~~~---------~~~~V~vPs~R 450 (805)
.++..++++.|+.+||...... ++-.|+||.+-
T Consensus 6 ~~~~ke~ik~Le~~Gf~~vrqkGSH~q~kHp~~~~vtVP~Hp 47 (66)
T COG1724 6 RMKAKEVIKALEKDGFQLVRQKGSHRQYKHPDGGRVTVPFHP 47 (66)
T ss_pred CCCHHHHHHHHHHCCCEEEEEECCEEEEECCCCCEEEECCCC
T ss_conf 678899999998578489886233058875999879951788
No 143
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=32.22 E-value=27 Score=14.21 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=11.4
Q ss_pred EEECCCC---CCCCCHHHHHHHHHHH
Q ss_conf 6640345---4334402567676765
Q gi|254780316|r 444 VSVPSWR---QDVEEKADLVEEILRI 466 (805)
Q Consensus 444 V~vPs~R---~DI~~e~DLiEEIaRi 466 (805)
+.+-.+| .| ..-.++++.+.++
T Consensus 207 iLvT~HRreN~~-~~~~~i~~al~~i 231 (383)
T COG0381 207 ILVTAHRRENVG-EPLEEICEALREI 231 (383)
T ss_pred EEEECCHHHCCC-CCHHHHHHHHHHH
T ss_conf 999705554036-4299999999999
No 144
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=32.04 E-value=31 Score=13.82 Aligned_cols=55 Identities=16% Similarity=0.282 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHHHHHHHHCC--CCCCEEEECCCC---CCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 458789999999840222103--456236640345---4334402567676765352334
Q gi|254780316|r 418 DVPIEDSLRILERLGFSVIGE--YDKFEVSVPSWR---QDVEEKADLVEEILRIYGVDQI 472 (805)
Q Consensus 418 ~i~~~ei~~iL~~Lgf~v~~~--~~~~~V~vPs~R---~DI~~e~DLiEEIaRiyGYdnI 472 (805)
.+++++|.++-+.||+.+-.+ ...+...+|..- .+-...++-.|++.|-+||..+
T Consensus 131 gl~K~eVR~la~~lgLp~~~kp~~~CLasRip~g~~it~e~L~~v~~aE~~L~~~G~~~~ 190 (202)
T cd01990 131 GLGKAEIRELARELGLPTWDKPAMACLASRIPYGTEITEERLKKVEAAEEFLRSLGFREV 190 (202)
T ss_pred CCCHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCE
T ss_conf 978899999999839985668998754666578884899999999999999998199827
No 145
>PRK03634 rhamnulose-1-phosphate aldolase; Provisional
Probab=32.00 E-value=31 Score=13.82 Aligned_cols=32 Identities=16% Similarity=0.426 Sum_probs=17.6
Q ss_pred EEEEEECCCCCCCEEEEECCCCCEEEEECCCCC
Q ss_conf 999756579987089997599957989754834
Q gi|254780316|r 49 VLSVERNPDLDCAILRIDTGKHQEIQVVCGAPN 81 (805)
Q Consensus 49 v~~~~~hP~adl~v~~Vd~g~~~~~~IvcgA~N 81 (805)
...+...|..++-+++||.+. +-++|+-|+.+
T Consensus 79 fR~v~~~P~~~~~ii~I~~~G-~~y~i~wG~~~ 110 (274)
T PRK03634 79 FRNVQLDPAANLGVIKVDSDG-AGYHILWGLTN 110 (274)
T ss_pred HHHCCCCHHHCCEEEEECCCC-CEEEEEECCCC
T ss_conf 654002822335089996898-67898750577
No 146
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family; InterPro: IPR014073 This entry describes one of two paralogous families of archaeal flavoprotein. The other, described by IPR014072 from INTERPRO and typified by the partially characterised AF1518 of ArchaArchaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown..
Probab=32.00 E-value=16 Score=15.86 Aligned_cols=10 Identities=50% Similarity=1.072 Sum_probs=5.3
Q ss_pred HHHHHHHCCC
Q ss_conf 7676765352
Q gi|254780316|r 460 VEEILRIYGV 469 (805)
Q Consensus 460 iEEIaRiyGY 469 (805)
.|||.||||.
T Consensus 40 gEEVvrMyGL 49 (237)
T TIGR02700 40 GEEVVRMYGL 49 (237)
T ss_pred HHHHHHHHCC
T ss_conf 2233541131
No 147
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=31.26 E-value=32 Score=13.74 Aligned_cols=91 Identities=14% Similarity=0.196 Sum_probs=58.0
Q ss_pred HCCC--CCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCEECCCCHHHHHHCCCCCHHHHHHHHHHHHHHHH-
Q ss_conf 1345--5301358899988875212334555652587413554310000431133331134587899999998402221-
Q gi|254780316|r 360 FERG--VDLQGMIPVLKHIVSLILSLCGGTASDICIARNITYKPRKIVFMNSEVKRLSGIDVPIEDSLRILERLGFSVI- 436 (805)
Q Consensus 360 fERg--vd~~~~~~al~r~~~Li~e~~gg~~~~~~~~~~~~~~~~~I~l~~~~i~~ilG~~i~~~ei~~iL~~Lgf~v~- 436 (805)
..+| +|.+.+..++.++++-..+.+|.++..+.+..+-.. .+...... --.+-|-.++.+++.+.++..-....
T Consensus 37 i~~G~I~d~~~~~~~I~~ai~~aE~~ag~~I~~V~v~isg~~-~~s~~~~~--~~~i~~~~It~~DI~~~~~~a~~~~~~ 113 (187)
T smart00842 37 IRKGVIVDIEAAARAIREAVEEAERMAGVKIDSVYVGISGRH-LKSVNVSG--VVAIPDKEITQEDIDRVLEAAKAVALP 113 (187)
T ss_pred EECCEEECHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCC-EEEEEEEE--EEECCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 078999828999999999999998743874257999966885-79999899--998898792899999999985632469
Q ss_pred CCCCCCEEEECCCCCCC
Q ss_conf 03456236640345433
Q gi|254780316|r 437 GEYDKFEVSVPSWRQDV 453 (805)
Q Consensus 437 ~~~~~~~V~vPs~R~DI 453 (805)
.+.+-+.+.+..|+.|=
T Consensus 114 ~~~~ilh~~p~~y~iD~ 130 (187)
T smart00842 114 PDREILHVLPQEYILDG 130 (187)
T ss_pred CCCEEEEEEEEEEEECC
T ss_conf 88469999832679958
No 148
>pfam08536 Whirly Whirly transcription factor. This family contains the plant whirly transcription factors.
Probab=30.48 E-value=32 Score=13.65 Aligned_cols=68 Identities=13% Similarity=0.035 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHHHCCCE--EEEEEC-CC-CCCCEEEEEEEEEEECCCCCCCEEEEECCCCCEEEEECCCCCCCCCCEEEE
Q ss_conf 99889999998745860--421112-46-568748999999756579987089997599957989754834558978989
Q gi|254780316|r 15 DVSLEKICDTLTSIGLE--VEKVDN-RE-ALSPFTIVKVLSVERNPDLDCAILRIDTGKHQEIQVVCGAPNVRVGLLGVW 90 (805)
Q Consensus 15 ~~~~~~l~~~lt~~G~E--Ve~i~~-~~-~~~~vvvg~v~~~~~hP~adl~v~~Vd~g~~~~~~IvcgA~Nv~~g~~V~~ 90 (805)
.+|+.|+.+-++ +|.. +|-+|+ .. .-..=.|.|+++++||||-.-.. --++|+.+..|+.+...|||
T Consensus 56 ~LS~tEvG~l~s-l~~~~sceFfHDP~~~~s~~G~v~K~Lkvep~pdGsG~F--------~nlsV~n~~~~~~e~~~ipV 126 (139)
T pfam08536 56 MLSATEAGELAS-MAPNGSCEFFHDPSAGGSNAGQVRKALKVEPMPDGSGYF--------VNLSVTNSINKGNERFSVPV 126 (139)
T ss_pred EECHHHHHHHHH-HCCCCCEEEEECCCCCCCCCCCEEEEEEEEECCCCCEEE--------EEEEEECCCCCCCCEEEEEE
T ss_conf 857999645663-447997047727665788876256667755769996589--------99998726635676599863
Q ss_pred E
Q ss_conf 6
Q gi|254780316|r 91 A 91 (805)
Q Consensus 91 A 91 (805)
-
T Consensus 127 t 127 (139)
T pfam08536 127 T 127 (139)
T ss_pred E
T ss_conf 2
No 149
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=30.23 E-value=33 Score=13.62 Aligned_cols=43 Identities=14% Similarity=0.207 Sum_probs=26.4
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCC
Q ss_conf 7787888864013210399999899986087000001022333
Q gi|254780316|r 232 NWMRQRLKAVGLRSISALVDITNYVSLDRGYPSHVFDASRISD 274 (805)
Q Consensus 232 ~wl~~rL~~~Gir~inniVDitNyvmle~GqPlHafD~dki~~ 274 (805)
.++++=|...|+..+.-.-+=.|-+|.+..+..|.-|+|-...
T Consensus 89 ~~i~~N~~~N~~~~~~v~~~dAn~lm~~~~~~fD~IDlDPfGS 131 (376)
T PRK04338 89 ELIKKNLELNGLENAEVFNEDANVLLHENERKFDVVDIDPFGS 131 (376)
T ss_pred HHHHHHHHHHCCCCEEEECCCHHHHHHHCCCCCCEEEECCCCC
T ss_conf 9999999982998269813248999983787587786789999
No 150
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism]
Probab=30.05 E-value=33 Score=13.60 Aligned_cols=79 Identities=20% Similarity=0.308 Sum_probs=39.0
Q ss_pred CCCCCCCEEEEEECCE-EEEEEEEEECHHHHHHCCCCCCEEEEEEEHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEE
Q ss_conf 5678981699998792-999998547789999668799789999878762354520245663136898887200189996
Q gi|254780316|r 646 SWYHPGRSGIIKTSAE-IVLGYFGEFHPNILDFFGLSNPICGFEVYLDSIPISQKKRTKTKKVVHLSSLHPVKRDLAFIV 724 (805)
Q Consensus 646 ~~~hPgrsa~I~~~gk-~iiG~iG~ihP~i~~~~~i~~~v~~~EI~ld~L~~~~~~~~~~~~~~~~s~fP~v~RDls~iv 724 (805)
..||.|+....+.++- ..++--|... ..+..|+=..|...|+++++.|... .-|.-++.....+
T Consensus 266 ~~YyTg~~F~ay~~~~~~al~~GGRYd-~l~~~f~~~~patGf~~~l~~l~~~--------------~~~~~~~~~~~~f 330 (390)
T COG3705 266 FDYYTGLVFLAYADGLGDALASGGRYD-GLLGLFGRAAPATGFALRLDALAQG--------------GLPLEERRYAALF 330 (390)
T ss_pred CCHHHCEEEEEEECCCCCHHHCCCCHH-HHHHHCCCCCCCHHHHHHHHHHHHC--------------CCCCCCCHHHHCC
T ss_conf 431220023465256564332142200-0233227666640167319999834--------------7885443022203
Q ss_pred CCCCC--HHHHHHHHHH
Q ss_conf 68879--9999999971
Q gi|254780316|r 725 DQHIP--AGTLVNIIKN 739 (805)
Q Consensus 725 ~~~v~--~~~I~~~i~~ 739 (805)
+.... .+.+.+.+.+
T Consensus 331 ~~~~~~~~~~~~e~~~~ 347 (390)
T COG3705 331 GRELDYYTGAAFEAAQA 347 (390)
T ss_pred CCCCHHHHHHHHHHHHH
T ss_conf 75401567799999997
No 151
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic; InterPro: IPR005787 Serine and threonine dehydratases , are functionally and structurally related pyridoxal-phosphate dependent enzymes. L-serine dehydratase () and D-serine dehydratase () catalyze the dehydratation of L-serine (respectively D-serine) into ammonia and pyruvate. Threonine dehydratase () (TDH) catalyzes the dehydratation of threonine into alpha-ketobutarate and ammonia. In Escherichia coli and other microorganisms, two classes of TDH are known to exist. One is involved in the biosynthesis of isoleucine, the other in hydroxamino acid catabolism. Threonine synthase () is also a pyridoxal-phosphate enzyme, it catalyzes the transformation of homoserine-phosphate into threonine. It has been shown that threonine synthase is distantly related to the serine/threonine dehydratases. In all these enzymes, the pyridoxal-phosphate group is attached to a lysine residue. This family describes a form of threonine dehydratase, with two copies of the threonine dehydratase C-terminal domain IPR001721 from INTERPRO. Members with known function participate in isoleucine biosynthesis and are inhibited by isoleucine.; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process.
Probab=29.98 E-value=27 Score=14.21 Aligned_cols=155 Identities=18% Similarity=0.250 Sum_probs=76.3
Q ss_pred CCCCCCCHHHHHHHCCCCCCCCCEEEECCCCC-CCCCHHHHHCCCCEEEEEEECCCHHHHHHH-HHHHHHHHHHHCCCCC
Q ss_conf 58650545411887699854775078168888-884558870888559998708785766555-7899987764115666
Q gi|254780316|r 110 RGIESTGMMCSEKELMLSDDSASIMELPIDAP-VGGRLSDYLELSDPIIDVSLTPNRSDCIGV-RGIALDLVAAGLGKLK 187 (805)
Q Consensus 110 rGv~S~GMlCS~~ELgl~~~~~gI~~l~~~~~-~G~~~~~~l~l~D~i~ei~iTpNR~D~ls~-~GiARElaa~~~~~l~ 187 (805)
-|-.-+|-=-|++-||+. -++|.|+.+| +=.+..+-+| ...|+ +||-+|- .+-|+||+---+..+-
T Consensus 75 AGNHAQGVAlsa~~LG~~----A~IVMP~tTP~IKV~AVk~~G-geVvL-------hG~~y~~A~~~A~eL~q~~GlTfi 142 (508)
T TIGR01124 75 AGNHAQGVALSAEKLGLK----AVIVMPETTPDIKVDAVKAFG-GEVVL-------HGDNYDDAKDHAIELAQEKGLTFI 142 (508)
T ss_pred CCCHHHHHHHHHHHCCCC----EEEECCCCCCCCCHHHEECCC-CEEEE-------ECCCHHHHHHHHHHHHHHCCCEEE
T ss_conf 454578998766317972----698788888220012031269-87997-------379857999999999973688652
Q ss_pred CCCCCCCCCCCC--------------CCCEEEEEEECCCHHHHHHHCCCCCC---------CCCCCCHHHHHHHHHHCCC
Q ss_conf 655456677777--------------77415898407311123320112322---------4556637787888864013
Q gi|254780316|r 188 EINISCPLSSES--------------IPLEIKFDLDDSSLCKGFAMCCVKGV---------RNNVAPNWMRQRLKAVGLR 244 (805)
Q Consensus 188 ~~~~~~~~~~~~--------------~~~~i~v~i~~~~~c~~y~~~~i~~v---------~~~~SP~wl~~rL~~~Gir 244 (805)
+| +..|....+ .-..|=|.|--..+.-- ++..||.+ .-.+| .=|+.-
T Consensus 143 ~P-FDdPlVIAGQGT~alEil~Q~~~~~davFVpvGGGGLiAG-VA~~~K~l~P~IkvIGVEp~DS-~am~~s------- 212 (508)
T TIGR01124 143 HP-FDDPLVIAGQGTVALEILRQVAEDLDAVFVPVGGGGLIAG-VAALVKQLMPEIKVIGVEPTDS-DAMKQS------- 212 (508)
T ss_pred CC-CCCCCEECCCHHHHHHHHHCCCCCCCEEEEECCCCHHHHH-HHHHHHHCCCCEEEEEECCCHH-HHHHHH-------
T ss_conf 78-8886403251066687650576847688871177368999-9999972289618997478659-999999-------
Q ss_pred CCHHHHHHHHHHHHHHCCCEEEECCCCC---CCEEEEEECCCCCCHHHHHHHCCCCCCCCEEEECCC
Q ss_conf 2103999998999860870000010223---332688623554311455420112454320000256
Q gi|254780316|r 245 SISALVDITNYVSLDRGYPSHVFDASRI---SDVLTVRRACSGEKILALDNQEYDLSPDNVVIASDG 308 (805)
Q Consensus 245 ~inniVDitNyvmle~GqPlHafD~dki---~~~i~vr~a~~~E~~~~Ld~~e~~L~~~~lvI~d~~ 308 (805)
|+-|.|. +++.+ .+.+-||...+ |||-+ - ++| | +|+|-.|.+
T Consensus 213 -------------L~AG~~V---~L~~VGlFaDGVAVk~vG~-~TF~L-C-~~Y-v--Dd~v~VdtD 257 (508)
T TIGR01124 213 -------------LEAGERV---DLDQVGLFADGVAVKEVGD-ETFRL-C-QQY-V--DDIVRVDTD 257 (508)
T ss_pred -------------HHCCCCC---CCCCCCEEECCEEEHHHHH-HHHHH-H-HHH-C--CCEEEECCH
T ss_conf -------------8568811---3771103426735400434-45899-9-974-4--554862644
No 152
>pfam08676 MutL_C MutL C terminal dimerization domain. MutL and MutS are key components of the DNA repair machinery that corrects replication errors. MutS recognizes mispaired or unpaired bases in a DNA duplex and in the presence of ATP, recruits MutL to form a DNA signaling complex for repair. The N terminal region of MutL contains the ATPase domain and the C terminal is involved in dimerization.
Probab=29.70 E-value=33 Score=13.56 Aligned_cols=59 Identities=27% Similarity=0.392 Sum_probs=38.4
Q ss_pred CCCCCCEECCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC-CCEE-EECCCCCCCCCHHHHHHHHH
Q ss_conf 5543100004311333311345878999999984022210345-6236-64034543344025676767
Q gi|254780316|r 398 TYKPRKIVFMNSEVKRLSGIDVPIEDSLRILERLGFSVIGEYD-KFEV-SVPSWRQDVEEKADLVEEIL 464 (805)
Q Consensus 398 ~~~~~~I~l~~~~i~~ilG~~i~~~ei~~iL~~Lgf~v~~~~~-~~~V-~vPs~R~DI~~e~DLiEEIa 464 (805)
-..|..+.++......+ .+....|+++||.++.-++ .+.| .+|+|=.. ....++++|++
T Consensus 52 Ll~P~~i~l~~~e~~~l-------~~~~~~l~~lGf~~e~~g~~~~~i~~vP~~l~~-~~~~~~i~~il 112 (142)
T pfam08676 52 LLIPLTLELSPEEAALL-------EEHKELLARLGFELEEFGPNSLIVRSVPALLRQ-QNLEELIRELL 112 (142)
T ss_pred CCCCCEECCCHHHHHHH-------HHHHHHHHHCCEEEEECCCCEEEEEEECCCCCC-CCHHHHHHHHH
T ss_conf 57896331699999999-------999999997793999558999999984855577-58999999999
No 153
>PTZ00031 ribosomal protein L2; Provisional
Probab=29.22 E-value=34 Score=13.50 Aligned_cols=43 Identities=21% Similarity=0.240 Sum_probs=16.9
Q ss_pred EEEEEEEEEECCCCCCCEEEEECCCCCEEEEECCCCCCCCCCEE
Q ss_conf 89999997565799870899975999579897548345589789
Q gi|254780316|r 45 TIVKVLSVERNPDLDCAILRIDTGKHQEIQVVCGAPNVRVGLLG 88 (805)
Q Consensus 45 vvg~v~~~~~hP~adl~v~~Vd~g~~~~~~IvcgA~Nv~~g~~V 88 (805)
+.|+|..+|=-||---+|+-|...+++..-|++ ..++++|+.|
T Consensus 119 i~a~V~~IEYDPNRSA~IALv~y~DGek~YILA-P~glkvGD~I 161 (330)
T PTZ00031 119 IYSTVLRIEYDPTRSAHVALIQYEDGVLSYILC-PAGVRPGDKL 161 (330)
T ss_pred CCEEEEEEEECCCCCEEEEEEECCCCCEEEEEC-CCCCCCCCEE
T ss_conf 977999987899998068999847996889977-4898789989
No 154
>pfam09866 DUF2093 Uncharacterized protein conserved in bacteria (DUF2093). This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=28.70 E-value=35 Score=13.44 Aligned_cols=19 Identities=26% Similarity=0.338 Sum_probs=14.9
Q ss_pred CCCCCEEEEECCCCEECCC
Q ss_conf 5589789896687792589
Q gi|254780316|r 82 VRVGLLGVWAPPGSCIPEN 100 (805)
Q Consensus 82 v~~g~~V~~A~~Ga~lp~g 100 (805)
+++|.+|.+|.-|.++|-.
T Consensus 2 i~~G~~V~CAVsgk~IpL~ 20 (42)
T pfam09866 2 LSPGSFVLCAVTGEPIPLD 20 (42)
T ss_pred CCCCCEEEEEEECCEECHH
T ss_conf 4579998997409800264
No 155
>TIGR02045 P_fruct_ADP ADP-specific phosphofructokinase; InterPro: IPR011790 Phosphofructokinase is a key enzyme of glycolysis. The phosphate group donor for different subtypes of phosphofructokinase can be ATP, ADP, or pyrophosphate. This family consists of ADP-dependent phosphofructokinases found in archaea. Members are more similar to ADP-dependent glucokinases (excluded from this family) than to other phosphofructokinases .; GO: 0008443 phosphofructokinase activity, 0006000 fructose metabolic process, 0006096 glycolysis, 0005737 cytoplasm.
Probab=28.61 E-value=20 Score=15.07 Aligned_cols=27 Identities=30% Similarity=0.604 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHCCCCC-CCCHHHHHHH
Q ss_conf 98878778774023210-0482576552
Q gi|254780316|r 498 VKRVLASRAMMEVVNWS-FISKEQSVLF 524 (805)
Q Consensus 498 ir~~L~~~Gf~Ev~tys-l~s~~~~~~~ 524 (805)
+.+.|+.+++.+|+-|+ |.|++.++.|
T Consensus 96 isNLL~~L~~~kvi~YtPfLsk~qAE~F 123 (466)
T TIGR02045 96 ISNLLARLQLKKVIVYTPFLSKRQAEMF 123 (466)
T ss_pred HHHHHCCCCEEEEEEECCCCHHHHHHHH
T ss_conf 9987503870079986787616788764
No 156
>pfam05339 DUF739 Protein of unknown function (DUF739). This family contains several bacteriophage proteins. Some of the proteins in this family have been labeled putative cro repressor proteins.
Probab=28.57 E-value=12 Score=16.77 Aligned_cols=19 Identities=32% Similarity=0.529 Sum_probs=15.3
Q ss_pred CCCHHHHHHHHHHHCCCCH
Q ss_conf 5787888778876165401
Q gi|254780316|r 337 LWDPINIARSGKNLGIITD 355 (805)
Q Consensus 337 ~F~p~~Ir~tar~l~l~Td 355 (805)
.|....|.++..-|++.+|
T Consensus 42 ~w~q~ei~kai~lL~i~~d 60 (69)
T pfam05339 42 IWVANEIEKAIDLLGIPKD 60 (69)
T ss_pred CCCHHHHHHHHHHHCCCHH
T ss_conf 7539999999999689988
No 157
>TIGR01792 urease_alph urease, alpha subunit; InterPro: IPR005848 Urease (urea amidohydrolase, 3.5.1.5 from EC) catalyses the hydrolysis of urea to form ammonia and carbamate. The subunit composition of urease from different sources varies , but each holoenzyme consists of four structural domains : three structural domains and a nickel-binding catalytic domain common to amidohydrolases . Urease is unique among nickel metalloenzymes in that it catalyses a hydrolysis rather than a redox reaction. In Helicobacter pylori, the gamma and beta domains are fused and called the alpha subunit (IPR008223 from INTERPRO). The catalytic subunit (called beta or B) has the same organization as the Klebsiella alpha subunit. Jack bean (Canavalia ensiformis) urease has a fused gamma-beta-alpha organization (IPR008221 from INTERPRO). This entry describes the urease alpha subunit UreC (designated beta or B chain, UreB in Helicobacter species). Urease (3.5.1.5 from EC) belongs to MEROPS peptidase family M38 (clan MJ). ; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process.
Probab=27.83 E-value=36 Score=13.34 Aligned_cols=79 Identities=19% Similarity=0.220 Sum_probs=45.4
Q ss_pred EEEEEE--ECHHHHHHCCCCCCEEEEEEEHH-HHHHHHHCCCCCCCCCCCCCCCC-CEEE---EEEEECC-------CCC
Q ss_conf 999854--77899996687997899998787-62354520245663136898887-2001---8999668-------879
Q gi|254780316|r 664 LGYFGE--FHPNILDFFGLSNPICGFEVYLD-SIPISQKKRTKTKKVVHLSSLHP-VKRD---LAFIVDQ-------HIP 729 (805)
Q Consensus 664 iG~iG~--ihP~i~~~~~i~~~v~~~EI~ld-~L~~~~~~~~~~~~~~~~s~fP~-v~RD---ls~iv~~-------~v~ 729 (805)
+-|+-+ +.--+.++|+|+..+. .--|.- .|-... -+--|-.|. ++=| ..+-||= +.+
T Consensus 500 ~TFVS~~a~d~gi~e~~gL~k~~~-pV~N~RG~igK~~--------Mk~N~~~P~tieVDPqTydV~vDGndlenWleqP 570 (605)
T TIGR01792 500 VTFVSQAAYDKGIKERLGLEKKLL-PVKNTRGSIGKAD--------MKLNSATPKTIEVDPQTYDVKVDGNDLENWLEQP 570 (605)
T ss_pred EEHEEHHHHHHCHHHHHCCCEEEE-EECCCCCCCCCCC--------CCCCCCCCCCEEECCCCEEEEECHHHHHHHHCCH
T ss_conf 401025345512376608320688-5315478777434--------4322678860111786115774213677664051
Q ss_pred HHHHHHHHHH-C-CCCEEEEEEEE
Q ss_conf 9999999971-1-10035769898
Q gi|254780316|r 730 AGTLVNIIKN-V-DRLIDDVTVFD 751 (805)
Q Consensus 730 ~~~I~~~i~~-~-~~ll~~v~lfD 751 (805)
+.++.+.+|+ + ++.+-.+++.|
T Consensus 571 aaelakklkktanGk~~~t~~P~~ 594 (605)
T TIGR01792 571 AAELAKKLKKTANGKELITVEPAD 594 (605)
T ss_pred HHHHHHHHHHHCCCCEEECCCCCC
T ss_conf 789999875421787675257757
No 158
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit; InterPro: IPR012717 Members of this eukaryotic family are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.; GO: 0005524 ATP binding, 0051082 unfolded protein binding, 0006457 protein folding.
Probab=27.68 E-value=17 Score=15.65 Aligned_cols=122 Identities=24% Similarity=0.305 Sum_probs=66.9
Q ss_pred ECCCCHHHHHHC---CCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHH--------HHHCCCCC-C
Q ss_conf 004311333311---34587899999998402221034562366403454334402567676--------76535233-4
Q gi|254780316|r 405 VFMNSEVKRLSG---IDVPIEDSLRILERLGFSVIGEYDKFEVSVPSWRQDVEEKADLVEEI--------LRIYGVDQ-I 472 (805)
Q Consensus 405 ~l~~~~i~~ilG---~~i~~~ei~~iL~~Lgf~v~~~~~~~~V~vPs~R~DI~~e~DLiEEI--------aRiyGYdn-I 472 (805)
++.+.+++|.-= -+|+.++|.-+=+.|||....+ |-.|-.|-...+||+||| .|+-|..| -
T Consensus 296 dlaLHfL~K~~I~vvKDIeRe~veF~~k~lGc~PiA~-------id~f~~d~LG~A~lvEev~~~~~~k~~kitG~~~~~ 368 (526)
T TIGR02342 296 DLALHFLAKMKIMVVKDIEREEVEFISKTLGCKPIAS-------IDHFTADKLGKAELVEEVKTSDDSKIIKITGVQNNN 368 (526)
T ss_pred HHHHHHHHHCCEEEEEECCCCCHHHHHHHCCCCCEEC-------CCCCCCCCCCCCCEEEEECCCCCCEEEEEECCCCCC
T ss_conf 8999998428817986056131455643218840202-------114482006874114532238981389985224688
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 66765544345767899889546789887877877402321004825765520000000024677643210
Q gi|254780316|r 473 KSEPLPLTQVEDKRNLSLQQSRTRYVKRVLASRAMMEVVNWSFISKEQSVLFGGGQRELEILNPISADMSN 543 (805)
Q Consensus 473 p~~~l~~~~~~~~~~~~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~i~l~NPlS~e~s~ 543 (805)
+.++.. --....+.+ .-..-+|.+-+.|+= ==+|+.++.+ .-|++...++|.--|++.-..
T Consensus 369 ~~~tV~-v~~RGSN~L-vi~EAeRSlHDALCV-------iRsLVk~r~L-~~GGGaPE~E~a~~L~~~a~~ 429 (526)
T TIGR02342 369 AGKTVT-VLVRGSNKL-VIDEAERSLHDALCV-------IRSLVKKRAL-IAGGGAPEIEIALKLSKLART 429 (526)
T ss_pred CCCEEE-EEEECCCCH-HHHHHHHHHHHHHHH-------HHHHHHCCCC-CCCCCCCHHHHHHHHHHHHHH
T ss_conf 886278-998068602-242332215678999-------9988750651-388695289999999986654
No 159
>pfam02311 AraC_binding AraC-like ligand binding domain. This family represents the arabinose-binding and dimerization domain of the bacterial gene regulatory protein AraC. The domain is found in conjunction with the helix-turn-helix (HTH) DNA-binding motif pfam00165. This domain is distantly related to the Cupin domain pfam00190.
Probab=27.67 E-value=36 Score=13.32 Aligned_cols=107 Identities=17% Similarity=0.277 Sum_probs=63.4
Q ss_pred HCCCEEEECCCCCCCEEEEEECCCCCCHHHHHHHCCCCCCCCEEEECCCCCCCCHHHCCCCCCCCCCCCCEEEEEEECCC
Q ss_conf 08700000102233326886235543114554201124543200002567631001113553120136726999971578
Q gi|254780316|r 260 RGYPSHVFDASRISDVLTVRRACSGEKILALDNQEYDLSPDNVVIASDGRIQSIAGIIGGKHAGCDDNTTDVLVEVALWD 339 (805)
Q Consensus 260 ~GqPlHafD~dki~~~i~vr~a~~~E~~~~Ld~~e~~L~~~~lvI~d~~~~ialaGImGg~~s~v~~~T~~illEsA~F~ 339 (805)
.+.|-|.|.. ...+...+-...+|+.....+|+++.+.++++++..-+.+- +...+.+...-.=+-+|+
T Consensus 9 a~~~~~~f~~-H~H~~~~i~~i~~G~~~~~~~~~~~~~~~G~~~li~P~~~H----------~~~~~~~~~~~y~~l~~~ 77 (134)
T pfam02311 9 ARYPGHRFPP-HVHDFYVIGYIERGVGRLRLNGRTYHLGPGDLFLLPPGEPH----------DYEPESEDGWRYRWLYFE 77 (134)
T ss_pred EEECCCCCCC-CCCCCEEEEEEECCCEEEEECCEEEEECCCEEEEECCCCCE----------EEEECCCCCCEEEEEEEC
T ss_conf 9868964199-47697899999898499999999999689949998999969----------888689999699999999
Q ss_pred HHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 78887788761654015544134553013588999888752
Q gi|254780316|r 340 PINIARSGKNLGIITDSRYRFERGVDLQGMIPVLKHIVSLI 380 (805)
Q Consensus 340 p~~Ir~tar~l~l~TdaS~RfERgvd~~~~~~al~r~~~Li 380 (805)
|..++...+..+.......+.- -|+.+ ...+.++..++
T Consensus 78 ~~~l~~~~~~~~~~~~~~~~~~--~d~~l-~~~l~~l~~~l 115 (134)
T pfam02311 78 PELLERILADISILAGGPGLLL--RDPEL-AALLRALFRLL 115 (134)
T ss_pred HHHHHHHHHHCCCCCCCCCCEE--CCHHH-HHHHHHHHHHH
T ss_conf 9999999987048988985636--48889-99999999988
No 160
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=27.66 E-value=36 Score=13.32 Aligned_cols=51 Identities=10% Similarity=0.181 Sum_probs=37.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 3458789999999840222103456236640345433440256767676535233
Q gi|254780316|r 417 IDVPIEDSLRILERLGFSVIGEYDKFEVSVPSWRQDVEEKADLVEEILRIYGVDQ 471 (805)
Q Consensus 417 ~~i~~~ei~~iL~~Lgf~v~~~~~~~~V~vPs~R~DI~~e~DLiEEIaRiyGYdn 471 (805)
++++.+++.+.++.+. ..+-.++.||+| |..|+..-.|=+.|.|+..|==|
T Consensus 250 ~~v~~~~l~~f~~~~~---~~~f~G~sVTiP-~K~~i~~~lDeld~~A~~iGAVN 300 (477)
T PRK09310 250 LPLTPQELPEFFSLIR---DLPFLGLSVTMP-LKTAVLDFLDKLDPSVKLCGSCN 300 (477)
T ss_pred EECCHHHHHHHHHHHH---HCCCCEEEECCC-CHHHHHHHHCCCCHHHHHHCCEE
T ss_conf 8568889999999875---379988998807-79999987152898899737665
No 161
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=27.59 E-value=36 Score=13.31 Aligned_cols=176 Identities=17% Similarity=0.219 Sum_probs=80.9
Q ss_pred CCCCEEEEEEECCCHHHH---HHHHHHHCCCCH--HHHHHC---CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEC
Q ss_conf 367269999715787888---778876165401--554413---455301358899988875212334555652587413
Q gi|254780316|r 326 DNTTDVLVEVALWDPINI---ARSGKNLGIITD--SRYRFE---RGVDLQGMIPVLKHIVSLILSLCGGTASDICIARNI 397 (805)
Q Consensus 326 ~~T~~illEsA~F~p~~I---r~tar~l~l~Td--aS~RfE---Rgvd~~~~~~al~r~~~Li~e~~gg~~~~~~~~~~~ 397 (805)
++.--+.+-+-|+.+-.+ +..|+.+|++-+ -+.|-. +-=+++.+-..=...-..|.+.+...-..++.++..
T Consensus 43 ~~v~AvTv~sP~~p~~e~e~A~~~A~~iGi~H~~i~~~~~~~~~~~n~~~rCY~CK~~v~~~l~~~a~~~Gyd~V~dGtN 122 (269)
T COG1606 43 DNVVAVTVDSPYIPRREIEEAKNIAKEIGIRHEFIKMNRMDPEFKENPENRCYLCKRAVYSTLVEEAEKRGYDVVADGTN 122 (269)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEHHHCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 64699997168777666067899999948762465500025233049987355778999999999999739988974775
Q ss_pred -----CCCCCCEECCCCHHHHHHC-------CCCCHHHHHHHHHHHHHHHHC--CCCCCEEEECCCCC-CC--CCHHHHH
Q ss_conf -----5543100004311333311-------345878999999984022210--34562366403454-33--4402567
Q gi|254780316|r 398 -----TYKPRKIVFMNSEVKRLSG-------IDVPIEDSLRILERLGFSVIG--EYDKFEVSVPSWRQ-DV--EEKADLV 460 (805)
Q Consensus 398 -----~~~~~~I~l~~~~i~~ilG-------~~i~~~ei~~iL~~Lgf~v~~--~~~~~~V~vPs~R~-DI--~~e~DLi 460 (805)
.+.|- =+..+-+| +.|++++|..+.++||+..-. ....+...+|.|.. ++ ...++=.
T Consensus 123 asDl~~~RPG------~rA~kE~gi~sPl~e~gitk~eIre~a~~lgl~~~~kp~~aCl~sr~p~g~ei~~e~l~kv~~a 196 (269)
T COG1606 123 ASDLFDYRPG------LRALKELGIRSPLAEFGITKKEIREIAKSLGLPTWDKPSMACLASRIPYGEEITVEDLKKVEEA 196 (269)
T ss_pred HHHHCCCCCC------HHHHHHCCCCCHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 7873378830------2357760777718883975999999999759984558654332000677765668889988999
Q ss_pred HHHHHHCCCCCCCCCCC-CCCCCCCCCCCCHHH--HHHHHHHHHHHHHHHH
Q ss_conf 67676535233466765-544345767899889--5467898878778774
Q gi|254780316|r 461 EEILRIYGVDQIKSEPL-PLTQVEDKRNLSLQQ--SRTRYVKRVLASRAMM 508 (805)
Q Consensus 461 EEIaRiyGYdnIp~~~l-~~~~~~~~~~~~~~~--~~~~~ir~~L~~~Gf~ 508 (805)
|+..|-+|+.+|-...- .+..+ ...+..... .....+.+.+...||-
T Consensus 197 e~~l~~l~~~~irvr~~~~~A~i-Ev~~ee~~k~~~~~~~i~~~lk~~Gf~ 246 (269)
T COG1606 197 EEFLRELGVRQIRVRSEDNLAVI-EVGPEEPEKLLNEVEEIDDKLKKVGFR 246 (269)
T ss_pred HHHHHHHHHCEEEEEECCCEEEE-ECCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999864211444204753688-538557999964089999999983601
No 162
>TIGR01686 FkbH FkbH domain; InterPro: IPR010037 This entry describes a domain of unknown function. One of proteins with this domain is a modular polyketide synthase, which is 4800 amino acids in length from Streptomyces avermilitis, where the domain is the C-terminal segment. By contrast, the FkbH protein from Streptomyces hygroscopicus (Q84G18 from SWISSPROT) apparently contains only this domain. The remaining members of the family all contain an additional N-terminal domain of between 200 and 275 amino acids, which show less than 20 0dentity to one another. It seems likely then that these proteins are involved in disparate functions, probably the biosynthesis of different natural products. For instance, the FkbH gene is found in a gene cluster believed to be responsible for the biosynthesis of unusual 'PKS extender units' in the ascomycin pathway . This domain is composed of two parts, the first of which is a member of subfamily IIIC of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. All of the characterised enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in this domain. The C-terminal portion of this domain is unique to this family (by BLAST)..
Probab=27.42 E-value=27 Score=14.20 Aligned_cols=38 Identities=24% Similarity=0.300 Sum_probs=24.2
Q ss_pred EEEEECCCHH--HHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHH
Q ss_conf 9997157878--88778876165401554413455301358899
Q gi|254780316|r 332 LVEVALWDPI--NIARSGKNLGIITDSRYRFERGVDLQGMIPVL 373 (805)
Q Consensus 332 llEsA~F~p~--~Ir~tar~l~l~TdaS~RfERgvd~~~~~~al 373 (805)
-.-++.|+|. +||+-||+|||.|||=. | +|=+.++.+.
T Consensus 84 ~~~~~~W~PKs~~~~~~A~~LNl~~~s~~-F---~DD~p~E~~~ 123 (337)
T TIGR01686 84 SLLSIAWGPKSESLRKIAKKLNLGTDSFL-F---IDDNPAERAE 123 (337)
T ss_pred HHHHHCCCCCCHHHHHHHHHHCCCCCHHE-E---ECCCHHHHHH
T ss_conf 77864379971689999998488523110-0---0788754876
No 163
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB; InterPro: IPR011968 This family of proteins are found within apparent operons for the degradation of phenylacetic acid . These proteins contain the enoyl-CoA hydratase domain. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE)..
Probab=27.27 E-value=36 Score=13.35 Aligned_cols=25 Identities=28% Similarity=0.167 Sum_probs=20.2
Q ss_pred EECCCHHHHHHHH--HHHHHHHHHHCC
Q ss_conf 7087857665557--899987764115
Q gi|254780316|r 160 SLTPNRSDCIGVR--GIALDLVAAGLG 184 (805)
Q Consensus 160 ~iTpNR~D~ls~~--GiARElaa~~~~ 184 (805)
.+|-||||=|.-+ +|=+||+..+.+
T Consensus 11 ~LTLNRPd~LNSF~~~MH~~l~~aL~~ 37 (259)
T TIGR02280 11 RLTLNRPDKLNSFTAEMHAELREALER 37 (259)
T ss_pred EEECCCCCHHCCHHHHHHHHHHHHHHH
T ss_conf 431377001024008899999999866
No 164
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=26.83 E-value=37 Score=13.24 Aligned_cols=45 Identities=13% Similarity=0.104 Sum_probs=30.6
Q ss_pred HHCCCEEEECCCCCCCEEEEEECCCCCCHHHHHHHCCCCCCCCEEEECCCC
Q ss_conf 608700000102233326886235543114554201124543200002567
Q gi|254780316|r 259 DRGYPSHVFDASRISDVLTVRRACSGEKILALDNQEYDLSPDNVVIASDGR 309 (805)
Q Consensus 259 e~GqPlHafD~dki~~~i~vr~a~~~E~~~~Ld~~e~~L~~~~lvI~d~~~ 309 (805)
|.+-|+|-.|.-- +-...+|+-....||+++.|.++|+++-....
T Consensus 26 ~~~~~lH~Hd~~E------i~yv~~G~~~~~in~~~~~l~~Gdli~I~~~~ 70 (271)
T PRK10296 26 ESVSGLHQHDYYE------FTLVLTGRYYQEINGKRVLLERGDFVFIPLGS 70 (271)
T ss_pred CCCCCCEECCCEE------EEEEECCEEEEEECCEEEEEECCEEEEECCCC
T ss_conf 7899886668689------99997674899999999997089899982997
No 165
>TIGR01241 FtsH_fam ATP-dependent metallopeptidase HflB; InterPro: IPR005936 Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. FtsH is a membrane-anchored ATP-dependent protease that degrades misfolded or misassembled membrane proteins as well as a subset of cytoplasmic regulatory proteins. FtsH is a 647-residue protein of 70 kDa, with two putative transmembrane segments towards its N terminus which anchor the protein to the membrane, giving rise to a periplasmic domain of 70 residues and a cytoplasmic segment of 520 residues containing the ATPase and protease domains . ; GO: 0004222 metalloendopeptidase activity, 0030163 protein catabolic process, 0016020 membrane.
Probab=26.15 E-value=35 Score=13.38 Aligned_cols=39 Identities=31% Similarity=0.525 Sum_probs=28.6
Q ss_pred CCCEEEECC-CC--------CCCC-------CHHHHH----CC--CCEEEEEEECCCHHHHH
Q ss_conf 775078168-88--------8884-------558870----88--85599987087857665
Q gi|254780316|r 130 SASIMELPI-DA--------PVGG-------RLSDYL----EL--SDPIIDVSLTPNRSDCI 169 (805)
Q Consensus 130 ~~gI~~l~~-~~--------~~G~-------~~~~~l----~l--~D~i~ei~iTpNR~D~l 169 (805)
.=+|+-.|+ || ++|. ++++.| |+ +|-||=|.=| ||||.|
T Consensus 151 APCIIFIDEIDAVGr~RGaG~lGGGnDEREQTLNQLLVEMDGF~~~~gvIv~AAT-NRPDvL 211 (505)
T TIGR01241 151 APCIIFIDEIDAVGRQRGAGELGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAAT-NRPDVL 211 (505)
T ss_pred CCCEEEEECHHHCCCCCCCCCCCCCCCHHHHHHHHHHEECCCCCCCCCEEEEEEC-CCCCCC
T ss_conf 8970564010000333564366765413554332331331785898857998504-884116
No 166
>PRK12271 rps10p 30S ribosomal protein S10P; Reviewed
Probab=26.06 E-value=38 Score=13.12 Aligned_cols=10 Identities=20% Similarity=0.255 Sum_probs=3.6
Q ss_pred HHHHHHHHCC
Q ss_conf 9988875212
Q gi|254780316|r 373 LKHIVSLILS 382 (805)
Q Consensus 373 l~r~~~Li~e 382 (805)
++.++.-|.+
T Consensus 16 Ld~~~~~I~~ 25 (102)
T PRK12271 16 LDGVCNQIKE 25 (102)
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
No 167
>KOG0456 consensus
Probab=25.95 E-value=39 Score=13.11 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=12.9
Q ss_pred CCCCCCCCCCEEEEEEEECCCCCH
Q ss_conf 136898887200189996688799
Q gi|254780316|r 707 VVHLSSLHPVKRDLAFIVDQHIPA 730 (805)
Q Consensus 707 ~~~~s~fP~v~RDls~iv~~~v~~ 730 (805)
.+-+| .-+++-.||++++++...
T Consensus 502 vqMIS-QGAskvNIS~ivne~ea~ 524 (559)
T KOG0456 502 VQMIS-QGASKVNISCIVNEKEAE 524 (559)
T ss_pred EEEEC-CCCCCCEEEEEECHHHHH
T ss_conf 26410-565521079997738889
No 168
>COG3376 HoxN High-affinity nickel permease [Inorganic ion transport and metabolism]
Probab=25.70 E-value=19 Score=15.37 Aligned_cols=44 Identities=27% Similarity=0.347 Sum_probs=31.7
Q ss_pred EEEECCCCCCCEEEEEECCCCCCHHHHHHHCCCCCCCCEEEECCCCCCCCHHHCCCCCCCCCCCCCEEEE
Q ss_conf 0000102233326886235543114554201124543200002567631001113553120136726999
Q gi|254780316|r 264 SHVFDASRISDVLTVRRACSGEKILALDNQEYDLSPDNVVIASDGRIQSIAGIIGGKHAGCDDNTTDVLV 333 (805)
Q Consensus 264 lHafD~dki~~~i~vr~a~~~E~~~~Ld~~e~~L~~~~lvI~d~~~~ialaGImGg~~s~v~~~T~~ill 333 (805)
=||||+|.| .+.|+..|+|-. ++++|.+. |...++..+|--|++
T Consensus 61 RHA~DADHI---------------AAIDN~tRKLmQ------qgK~p~~V-----G~fFSlGHStVViL~ 104 (342)
T COG3376 61 RHAFDADHI---------------AAIDNVTRKLMQ------QGKNPLGV-----GFFFSLGHSTVVILL 104 (342)
T ss_pred CCCCCHHHH---------------HHHHHHHHHHHH------CCCCCCEE-----EEEEECCCHHHHHHH
T ss_conf 211563889---------------998789999996------79998526-----678854730899999
No 169
>PRK10119 hypothetical protein; Provisional
Probab=25.31 E-value=40 Score=13.03 Aligned_cols=13 Identities=15% Similarity=0.153 Sum_probs=6.5
Q ss_pred CHHHHHHHHHHHC
Q ss_conf 4025676767653
Q gi|254780316|r 455 EKADLVEEILRIY 467 (805)
Q Consensus 455 ~e~DLiEEIaRiy 467 (805)
.+.+.|+.|.++.
T Consensus 92 ~~~~~I~~I~~~I 104 (231)
T PRK10119 92 FPAEKIEAVCHAI 104 (231)
T ss_pred CCHHHHHHHHHHH
T ss_conf 7389999999999
No 170
>KOG0358 consensus
Probab=25.21 E-value=40 Score=13.02 Aligned_cols=39 Identities=36% Similarity=0.430 Sum_probs=16.2
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHH
Q ss_conf 4587899999998402221034562366403454334402567676
Q gi|254780316|r 418 DVPIEDSLRILERLGFSVIGEYDKFEVSVPSWRQDVEEKADLVEEI 463 (805)
Q Consensus 418 ~i~~~ei~~iL~~Lgf~v~~~~~~~~V~vPs~R~DI~~e~DLiEEI 463 (805)
+++.++|.-+-+.|||+...+ +-.|+.|-...+||+||+
T Consensus 322 dieRediefick~l~c~Pia~-------id~f~~d~Lg~adlveE~ 360 (534)
T KOG0358 322 DIEREDIEFICKTLGCKPIAD-------IDHFTADKLGSADLVEET 360 (534)
T ss_pred CCCHHHHHHHHHHCCCEECCH-------HHHCCHHHCCCCHHHHHC
T ss_conf 443766789885149701310-------432496443750244412
No 171
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=25.13 E-value=28 Score=14.05 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=16.4
Q ss_pred HHCCCCC--HHHHHHHHHHHHHHHHC
Q ss_conf 3113458--78999999984022210
Q gi|254780316|r 414 LSGIDVP--IEDSLRILERLGFSVIG 437 (805)
Q Consensus 414 ilG~~i~--~~ei~~iL~~Lgf~v~~ 437 (805)
.||++-. -.|++++|+.||.+|..
T Consensus 168 ~LGF~~r~D~~Ei~RLl~~lGi~VNv 193 (524)
T PRK02910 168 ALGFHNRDDLTELRRLLATLGIDVNV 193 (524)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 56768778899999999875966889
No 172
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=25.05 E-value=40 Score=13.00 Aligned_cols=21 Identities=19% Similarity=0.344 Sum_probs=10.0
Q ss_pred CHHHHHHHHHHHHHHCCCEEEEC
Q ss_conf 10399999899986087000001
Q gi|254780316|r 246 ISALVDITNYVSLDRGYPSHVFD 268 (805)
Q Consensus 246 inniVDitNyvmle~GqPlHafD 268 (805)
.+.++|+-.- +.+.+|-=.|-
T Consensus 167 ~~~I~~~v~~--~AL~~P~I~f~ 187 (612)
T PRK00095 167 LGHIDDVVRR--LALAHPDVAFT 187 (612)
T ss_pred HHHHHHHHHH--HHHHCCCEEEE
T ss_conf 9999999999--97517975899
No 173
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=24.94 E-value=40 Score=12.98 Aligned_cols=217 Identities=20% Similarity=0.182 Sum_probs=105.4
Q ss_pred CCCCCCCHHHHHHHCCCCCCCCCEEEECCCCCCC-CCHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 5865054541188769985477507816888888-455887088855999870878576655578999877641156666
Q gi|254780316|r 110 RGIESTGMMCSEKELMLSDDSASIMELPIDAPVG-GRLSDYLELSDPIIDVSLTPNRSDCIGVRGIALDLVAAGLGKLKE 188 (805)
Q Consensus 110 rGv~S~GMlCS~~ELgl~~~~~gI~~l~~~~~~G-~~~~~~l~l~D~i~ei~iTpNR~D~ls~~GiARElaa~~~~~l~~ 188 (805)
.|..-+|.--|.+-||+. +.++.|.++|.= .+-...+| -.++-.. .|--|+ +-.|+|++.--+..+-+
T Consensus 82 aGNHaQGvA~aa~~lGi~----a~IvMP~~tp~~Kv~a~r~~G--aeVil~g--~~~dda---~~~a~~~a~~~G~~~i~ 150 (347)
T COG1171 82 AGNHAQGVAYAAKRLGIK----ATIVMPETTPKIKVDATRGYG--AEVILHG--DNFDDA---YAAAEELAEEEGLTFVP 150 (347)
T ss_pred CCCHHHHHHHHHHHHCCC----EEEEECCCCCHHHHHHHHHCC--CEEEEEC--CCHHHH---HHHHHHHHHHCCCEEEC
T ss_conf 873799999999980998----799956998299999998569--8899979--977999---99999999973978858
Q ss_pred CCCCCCCCCCCCC---CEEEEEE---ECCCHHHHHHHCCCCCCCCCCCCHHHHHH---HHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 5545667777777---4158984---07311123320112322455663778788---8864013210399999899986
Q gi|254780316|r 189 INISCPLSSESIP---LEIKFDL---DDSSLCKGFAMCCVKGVRNNVAPNWMRQR---LKAVGLRSISALVDITNYVSLD 259 (805)
Q Consensus 189 ~~~~~~~~~~~~~---~~i~v~i---~~~~~c~~y~~~~i~~v~~~~SP~wl~~r---L~~~Gir~inniVDitNyvmle 259 (805)
| +..+....+.. .++--.. .|.-.||.=.|-.+.||.. +++.+ ..-+|+-|-+.- +=|--++
T Consensus 151 p-fD~p~viAGQGTi~lEileq~~~~~d~v~vpvGGGGLisGia~-----~~k~~~p~~~vIGVEp~~a~---~~~~Sl~ 221 (347)
T COG1171 151 P-FDDPDVIAGQGTIALEILEQLPDLPDAVFVPVGGGGLISGIAT-----ALKALSPEIKVIGVEPEGAP---SMYASLK 221 (347)
T ss_pred C-CCCCCEEECCCHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHH-----HHHHHCCCCEEEEEEECCCH---HHHHHHH
T ss_conf 9-9994525342589999998464568989995386479999999-----99983999729998148885---8999997
Q ss_pred HC-CCEEEECCCCCCCEEEEEECCCCCCHHH----------HHHHC-----CCCCCCCEEEECCCCCCCCHHHCCCCCCC
Q ss_conf 08-7000001022333268862355431145----------54201-----12454320000256763100111355312
Q gi|254780316|r 260 RG-YPSHVFDASRISDVLTVRRACSGEKILA----------LDNQE-----YDLSPDNVVIASDGRIQSIAGIIGGKHAG 323 (805)
Q Consensus 260 ~G-qPlHafD~dki~~~i~vr~a~~~E~~~~----------Ld~~e-----~~L~~~~lvI~d~~~~ialaGImGg~~s~ 323 (805)
-| +|.+.-+-+++.+.+-++...+ ++|.. .|+.+ +.|-...-+|+-..+.+++|+...+....
T Consensus 222 ~G~~~~~~~~~~tiaDG~av~~~g~-~tf~i~~~~vd~~v~V~e~ei~~am~~l~~~~~iI~EpaGAlalAal~~~~~~~ 300 (347)
T COG1171 222 AGKIVVVLPDVGTIADGLAVKRPGD-LTFEILRELVDDIVLVDEDEICAAMRDLFERTKIIAEPAGALALAALLAGKIEP 300 (347)
T ss_pred CCCCEEECCCCCCCCCCCCCCCCCH-HHHHHHHHCCCCEEEECHHHHHHHHHHHHHCCCEECCCCHHHHHHHHHHHHHHH
T ss_conf 5994353698780025420488877-789999970996899888999999999973277113660799999999600211
Q ss_pred CCCCCCEEEEEEECCCHHHHHHHH
Q ss_conf 013672699997157878887788
Q gi|254780316|r 324 CDDNTTDVLVEVALWDPINIARSG 347 (805)
Q Consensus 324 v~~~T~~illEsA~F~p~~Ir~ta 347 (805)
....|--+++=-+++|+...+...
T Consensus 301 ~~g~~v~~ilSGgN~d~~~~~~v~ 324 (347)
T COG1171 301 LQGKTVVVILSGGNIDFERLAEVL 324 (347)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHH
T ss_conf 379759999607887989999998
No 174
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=24.91 E-value=30 Score=13.85 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=15.9
Q ss_pred HHCCCCC--HHHHHHHHHHHHHHHH
Q ss_conf 3113458--7899999998402221
Q gi|254780316|r 414 LSGIDVP--IEDSLRILERLGFSVI 436 (805)
Q Consensus 414 ilG~~i~--~~ei~~iL~~Lgf~v~ 436 (805)
.+|++-. -.|++++|+.||.+|.
T Consensus 173 ~lgF~~~~Dl~Ei~RLl~~~Gi~VN 197 (510)
T CHL00076 173 TLGFHNQHDCRELKRLLQDLGIEIN 197 (510)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 5667887889999999997597788
No 175
>PHA02512 minor structural protein; Provisional
Probab=24.67 E-value=18 Score=15.46 Aligned_cols=42 Identities=10% Similarity=0.258 Sum_probs=21.3
Q ss_pred EEEECCCCCHHHHHHHHHHC-CCCEEEE----EEEEEEECCCCCCCC
Q ss_conf 99966887999999999711-1003576----989876367799884
Q gi|254780316|r 721 AFIVDQHIPAGTLVNIIKNV-DRLIDDV----TVFDVFQGKSLGEGK 762 (805)
Q Consensus 721 s~iv~~~v~~~~I~~~i~~~-~~ll~~v----~lfDvY~g~~i~~gk 762 (805)
.+++|-.+..+...+.+..+ .+-+.+. -..+.|--.++++..
T Consensus 773 ~VllPwGM~~~qF~kqv~~a~~~~~~~~Gik~~~vg~~glqs~GdsQ 819 (844)
T PHA02512 773 DVLLPFGMDAEQFDDQVNAAANEALKDAGIKTNAVGNFGLQNIGDNQ 819 (844)
T ss_pred CEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCE
T ss_conf 45521578888998999999987551556677996531510347742
No 176
>TIGR02939 RpoE_Sigma70 RNA polymerase sigma factor RpoE; InterPro: IPR014286 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme . RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognized by the major sigma factors , . This entry represents the clade of sigma factors called RpoE. These proteins are variously annotated as sigma-24, sigma-E factor, sigma-H factor, fecI-like sigma factor or alternative sigma factor AlgU.; GO: 0003677 DNA binding, 0003700 transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, 0006355 regulation of transcription DNA-dependent.
Probab=24.66 E-value=29 Score=13.98 Aligned_cols=56 Identities=16% Similarity=0.090 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCHHHHH
Q ss_conf 789887877877402321004825765520000000024677643210151221106776
Q gi|254780316|r 496 RYVKRVLASRAMMEVVNWSFISKEQSVLFGGGQRELEILNPISADMSNMRTSLLPGLLKA 555 (805)
Q Consensus 496 ~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~i~l~NPlS~e~s~lR~SLlp~LL~~ 555 (805)
+.-|++|++.|=.=- +-.=++.++++.|...+..=.+.|| |...|+.-|---.-++
T Consensus 82 NTAKNyLVaq~Rr~p-~~dg~~~edAE~F~~a~~Lr~~~tP---E~~ll~~el~~~v~~a 137 (192)
T TIGR02939 82 NTAKNYLVAQGRRPP-TSDGVEAEDAEQFEEADALRDIDTP---ERLLLSRELEQTVNKA 137 (192)
T ss_pred HHHHHHHHHCCCCCC-CCCCCCCHHHHCCCCCCCCCCCCCH---HHHHHHHHHHHHHHHH
T ss_conf 887776642479887-4456760433120026766556661---6799999999999999
No 177
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458; InterPro: IPR006355 These sequences are all members of the IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. .
Probab=24.57 E-value=36 Score=13.29 Aligned_cols=21 Identities=19% Similarity=0.468 Sum_probs=13.3
Q ss_pred CCCCHHHHHHHHHHCCCCCHH
Q ss_conf 566377878888640132103
Q gi|254780316|r 228 NVAPNWMRQRLKAVGLRSISA 248 (805)
Q Consensus 228 ~~SP~wl~~rL~~~Gir~inn 248 (805)
+|||.+.++-|.+.|+.|...
T Consensus 180 KPs~~fF~~al~a~G~epeea 200 (258)
T TIGR01458 180 KPSKEFFKEALRALGVEPEEA 200 (258)
T ss_pred CCCHHHHHHHHHHCCCCCCEE
T ss_conf 888589988866258881026
No 178
>cd00153 RalGDS_RA This CD represents the C-terminal Ras-associating (RA) domain of three closely related guanine-nucleotide exchange factors (GEF's), Ral guanine nucleotide dissociation stimulator (RalGDS), RalGDS-like (RGL), and RalGDS-like factor (RLF). The RalGDS proteins are downstream effectors of the Ras-related protein Ral, providing a mechanism for Ral activation by extracellular signals. The RA domain is structurally similar to ubiquitin and exists in a number of other signalling proteins including AF6, rasfadin, SNX27, CYR1, and STE50.
Probab=24.45 E-value=41 Score=12.92 Aligned_cols=35 Identities=14% Similarity=0.132 Sum_probs=25.0
Q ss_pred CCCEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHC
Q ss_conf 67269999715787888778876165401554413
Q gi|254780316|r 327 NTTDVLVEVALWDPINIARSGKNLGIITDSRYRFE 361 (805)
Q Consensus 327 ~T~~illEsA~F~p~~Ir~tar~l~l~TdaS~RfE 361 (805)
--|.|+|++--=-|..||+.-.+|++..|...+||
T Consensus 17 ~YKSIllt~qDktP~VI~~Am~Kh~l~~~~~~~y~ 51 (87)
T cd00153 17 LYKSILLTSQDKAPQVIRRAMEKHNLESEVAEDYE 51 (87)
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCEE
T ss_conf 79999985288677999999998488878701208
No 179
>pfam11548 Receptor_IA-2 Protein-tyrosine phosphatase receptor IA-2. IA-2 is a protein-tyrosine phosphatase receptor that upon exocytosis, the cytoplasmic domain is cleaved and moves to the nucleus where it enhances transcription of the insulin gene. The mature exodomain of IA-2 participates in adhesion to the extracellular matrix and is self-proteolyzed in vitro by reactive oxygen species which may be a new shedding mechanism.
Probab=24.34 E-value=41 Score=12.91 Aligned_cols=69 Identities=10% Similarity=0.140 Sum_probs=43.9
Q ss_pred CCCHHHHHHHHHHCCCCE--EEEEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCEEC
Q ss_conf 879999999997111003--57698987636779988426999999847798889999999999999999999511981
Q gi|254780316|r 727 HIPAGTLVNIIKNVDRLI--DDVTVFDVFQGKSLGEGKKSVAIQVLIQPLKDTFRDDDIRILMDRIVENVVKKTNAVLR 803 (805)
Q Consensus 727 ~v~~~~I~~~i~~~~~ll--~~v~lfDvY~g~~i~~gkkSla~rl~fqs~~kTLtd~EI~~i~~~ii~~l~~k~ga~LR 803 (805)
-.++++=.+.++....++ ..-...|+- + . --.+|||+ ++..+-++-.||-+.....-+.|++.-|.++=
T Consensus 13 ~ls~~~G~~Ll~~lA~ll~l~~s~F~~i~----V-~-gpaVTFrV--~~N~qN~t~adVa~~a~~~K~~Le~~tGl~Il 83 (91)
T pfam11548 13 PLSLDEGVRLMEILAERVHLPSSSFANIS----V-V-GPAVTFRV--RPNEQNVSTADVAKAAVDNKDQLEKQTGLRIL 83 (91)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCEEEEE----E-E-CCCEEEEE--CCCCCCCCHHHHHHHHHHHHHHHHHHHCEEEE
T ss_conf 88788999999999999579711236789----8-5-78179996--46713587999999999868888774182986
No 180
>pfam11829 DUF3349 Protein of unknown function (DUF3349). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length.
Probab=24.00 E-value=42 Score=12.86 Aligned_cols=63 Identities=14% Similarity=0.084 Sum_probs=35.5
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 33331134587899999998402221034562366403454334402567676765352334667655443457678998
Q gi|254780316|r 411 VKRLSGIDVPIEDSLRILERLGFSVIGEYDKFEVSVPSWRQDVEEKADLVEEILRIYGVDQIKSEPLPLTQVEDKRNLSL 490 (805)
Q Consensus 411 i~~ilG~~i~~~ei~~iL~~Lgf~v~~~~~~~~V~vPs~R~DI~~e~DLiEEIaRiyGYdnIp~~~l~~~~~~~~~~~~~ 490 (805)
+-.+|.-.++.+|+..+-..|- ..++ + | ....||-+.|.++-+.. | +.
T Consensus 28 LLALL~r~Ltddev~~Va~~L~----~~~~-~----~------i~~~dI~~~I~~vt~~~-------P----------~p 75 (97)
T pfam11829 28 LLALLRRRLTDDEVAEVAAELT----RRGE-P----A------IDDDDIGVLITAVTDEL-------P----------SP 75 (97)
T ss_pred HHHHHHCCCCHHHHHHHHHHHH----HCCC-C----C------CCHHHHHHHHHHHHCCC-------C----------CH
T ss_conf 9999814288999999999998----6478-9----9------99999999999987479-------8----------98
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 89546789887877877
Q gi|254780316|r 491 QQSRTRYVKRVLASRAM 507 (805)
Q Consensus 491 ~~~~~~~ir~~L~~~Gf 507 (805)
+. ..+++..|.+.|+
T Consensus 76 -~d-i~RV~arLaa~Gw 90 (97)
T pfam11829 76 -ED-VERVRARLAAHGW 90 (97)
T ss_pred -HH-HHHHHHHHHHCCC
T ss_conf -99-9999999986799
No 181
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase; InterPro: IPR006534 These sequences represent the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast . ; GO: 0016887 ATPase activity, 0015992 proton transport, 0016021 integral to membrane.
Probab=23.99 E-value=28 Score=14.05 Aligned_cols=268 Identities=17% Similarity=0.167 Sum_probs=117.8
Q ss_pred EEEEEECCCHHHHHHHCCCCCCCCCC-CCHHHHHHHHHHCCCCCHH---HHHHHHHHHHH-HCCCEEEECCCCCCCEEEE
Q ss_conf 58984073111233201123224556-6377878888640132103---99999899986-0870000010223332688
Q gi|254780316|r 204 IKFDLDDSSLCKGFAMCCVKGVRNNV-APNWMRQRLKAVGLRSISA---LVDITNYVSLD-RGYPSHVFDASRISDVLTV 278 (805)
Q Consensus 204 i~v~i~~~~~c~~y~~~~i~~v~~~~-SP~wl~~rL~~~Gir~inn---iVDitNyvmle-~GqPlHafD~dki~~~i~v 278 (805)
+.--|-.+ .-.-|.|+.-.=|+-.. .--.+|.-|.++|.=.|-. .|=|+=.+++- .+..+| ..+
T Consensus 186 ~~a~V~AT-G~NTFFGkaA~Lv~~~~~~~GHlQ~il~~IG~~liv~~~~~v~i~~~~~~~~~~~~~~-----~~~----- 254 (835)
T TIGR01647 186 AEAVVTAT-GMNTFFGKAAALVQSTETGSGHLQKILSKIGLFLIVLIGVLVLIELVVLFFGRGESFR-----EGE----- 254 (835)
T ss_pred EEEEEEEC-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE-----ECC-----
T ss_conf 05899972-7886077899988887521422989999864899999999999999998551064502-----347-----
Q ss_pred EECCCCCCHHHHHHHCCCCCCCCEEEECCCCCCCCHHHC---------------------------CCCCCCCCCCCCE-
Q ss_conf 623554311455420112454320000256763100111---------------------------3553120136726-
Q gi|254780316|r 279 RRACSGEKILALDNQEYDLSPDNVVIASDGRIQSIAGII---------------------------GGKHAGCDDNTTD- 330 (805)
Q Consensus 279 r~a~~~E~~~~Ld~~e~~L~~~~lvI~d~~~~ialaGIm---------------------------Gg~~s~v~~~T~~- 330 (805)
+| =.+ |+ ..||+.=+.=|+|++=|+ -|.+==|||.|-+
T Consensus 255 ----~G--C~~-------l~-f~LVLLvggIPiAmP~VlSvTmAvGA~~LAk~~AIV~rL~AIEElAGmdILCSDKTGTL 320 (835)
T TIGR01647 255 ----EG--CLT-------LQ-FALVLLVGGIPIAMPAVLSVTMAVGAAELAKKKAIVTRLTAIEELAGMDILCSDKTGTL 320 (835)
T ss_pred ----CC--CCC-------HH-CEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf ----77--622-------13-01554564000013145567788999998653775014888888764862133773432
Q ss_pred ----------EEEEE--ECCCHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHH--CCCCCCCCCCCEEEEE
Q ss_conf ----------99997--157878887788761654015544134553013588999888752--1233455565258741
Q gi|254780316|r 331 ----------VLVEV--ALWDPINIARSGKNLGIITDSRYRFERGVDLQGMIPVLKHIVSLI--LSLCGGTASDICIARN 396 (805)
Q Consensus 331 ----------illEs--A~F~p~~Ir~tar~l~l~TdaS~RfERgvd~~~~~~al~r~~~Li--~e~~gg~~~~~~~~~~ 396 (805)
.+.+. -.|++.+|-..| .=||.|=|.+-|+--.. .+..+..+= .+.|. +......
T Consensus 321 TlNKL~i~~~~~~~~~G~~~~~~Dv~l~A------aLAskwree~~DaID~~-~l~~~~~~~~~~~~~~----~y~~~~F 389 (835)
T TIGR01647 321 TLNKLSIDEILPFFGGGPGFDKDDVLLYA------ALASKWREENQDAIDTA-VLGSLKDLKRLKEARA----GYKVLEF 389 (835)
T ss_pred CCCEEEECCEEEEECCCCCCCHHHHHHHH------HHHHCCCCCCCCHHHHH-HHHHCCCHHHHHHHHH----CCEEEEE
T ss_conf 14445751112440657320488899988------77731687668743499-8741289689999972----9726786
Q ss_pred CCCC----------------CCCEECCCCHHHHHHCCC-----CCHH---HHHHH--------HHHHHHHHH--------
Q ss_conf 3554----------------310000431133331134-----5878---99999--------998402221--------
Q gi|254780316|r 397 ITYK----------------PRKIVFMNSEVKRLSGID-----VPIE---DSLRI--------LERLGFSVI-------- 436 (805)
Q Consensus 397 ~~~~----------------~~~I~l~~~~i~~ilG~~-----i~~~---ei~~i--------L~~Lgf~v~-------- 436 (805)
.|.. .+...+..--=+-+|+.- +.++ ++.+. +..||--.+
T Consensus 390 ~PFdhPv~KrT~a~~~~~~~G~~f~~~KGAP~~il~~~~~~~~~~~~v~~~Ve~~v~~lA~RG~RaLGVA~~evP~g~~~ 469 (835)
T TIGR01647 390 VPFDHPVDKRTEATVEDPETGKKFKVTKGAPQVILDLCDNKKEIEEEVREKVEEKVEELASRGYRALGVARTEVPSGEKA 469 (835)
T ss_pred ECCCCCCCCEEEEEEEECCCCCEEEEECCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCC
T ss_conf 55887955448999975588868998159848999963143427889998889999999707871421432017786555
Q ss_pred CCCCCCEEE--ECCC---CCCCCCHHHHH------------------HHHHHHCCCC-CC-CCCCCCCCCCCCCCCCCHH
Q ss_conf 034562366--4034---54334402567------------------6767653523-34-6676554434576789988
Q gi|254780316|r 437 GEYDKFEVS--VPSW---RQDVEEKADLV------------------EEILRIYGVD-QI-KSEPLPLTQVEDKRNLSLQ 491 (805)
Q Consensus 437 ~~~~~~~V~--vPs~---R~DI~~e~DLi------------------EEIaRiyGYd-nI-p~~~l~~~~~~~~~~~~~~ 491 (805)
.+.+.|+.. .|-| |+|=..-++=+ =|+||..|.. || +++.|+........ .
T Consensus 470 ~~~g~W~~~GllplfDPPR~DT~eTI~~A~~~GV~VKMvTGDhlaIAKEtaR~LGlGtni~~~~~L~~~~~~~~~---~- 545 (835)
T TIGR01647 470 DEKGRWHFLGLLPLFDPPRHDTKETIERARELGVEVKMVTGDHLAIAKETARRLGLGTNIYNADVLLKKDNRDKL---P- 545 (835)
T ss_pred CCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC---C-
T ss_conf 788735888720027836987389999998769769897002678776653215798753474100467776656---6-
Q ss_pred HHHHHHHHHHHH-HHHHHHCC
Q ss_conf 954678988787-78774023
Q gi|254780316|r 492 QSRTRYVKRVLA-SRAMMEVV 511 (805)
Q Consensus 492 ~~~~~~ir~~L~-~~Gf~Ev~ 511 (805)
....+++.+... +-||-||.
T Consensus 546 ~~~~~~~~E~ve~aDGFA~VF 566 (835)
T TIGR01647 546 SGAEEDLGELVESADGFAEVF 566 (835)
T ss_pred CCCCCCHHHHEEECCCCCCCC
T ss_conf 664222011111058830267
No 182
>PRK09295 selenocysteine lyase; Validated
Probab=23.97 E-value=42 Score=12.86 Aligned_cols=30 Identities=3% Similarity=0.087 Sum_probs=19.0
Q ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999984779888999999999999999999951
Q gi|254780316|r 766 AIQVLIQPLKDTFRDDDIRILMDRIVENVVKKTN 799 (805)
Q Consensus 766 a~rl~fqs~~kTLtd~EI~~i~~~ii~~l~~k~g 799 (805)
++|+.|.-. =|.+||+...+.+-+ +.+-||
T Consensus 377 ~iRvS~~~y---nT~eeId~lv~aL~~-I~k~l~ 406 (406)
T PRK09295 377 MCRASLAMY---NTHEEVDRLVAGLQR-IHRLLG 406 (406)
T ss_pred EEEEECCCC---CCHHHHHHHHHHHHH-HHHHHC
T ss_conf 799978899---999999999999999-999729
No 183
>TIGR00003 TIGR00003 copper ion binding protein; InterPro: IPR006122 Proteins that transport heavy metals in micro-organisms and eukaryotes share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases . A conserved 30-residue domain has been found in a number of these heavy metal transport or detoxification proteins . The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. This sub-domain is found in copper-binding proteins. ; GO: 0005507 copper ion binding, 0006825 copper ion transport.
Probab=22.92 E-value=44 Score=12.72 Aligned_cols=13 Identities=15% Similarity=0.348 Sum_probs=4.2
Q ss_pred HHHHHHHHHHCCC
Q ss_conf 8999999874586
Q gi|254780316|r 18 LEKICDTLTSIGL 30 (805)
Q Consensus 18 ~~~l~~~lt~~G~ 30 (805)
.++|+++|...|.
T Consensus 51 ~~~I~~Ai~d~GY 63 (66)
T TIGR00003 51 AKEIKEAILDAGY 63 (66)
T ss_pred HHHHHHHHHHCCC
T ss_conf 6778889873665
No 184
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=22.86 E-value=44 Score=12.71 Aligned_cols=55 Identities=13% Similarity=0.237 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHCCCCC--CCCCCCEEEEECCCCCCCEECCCCHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 8899988875212334--555652587413554310000431133331134587899999998402
Q gi|254780316|r 370 IPVLKHIVSLILSLCG--GTASDICIARNITYKPRKIVFMNSEVKRLSGIDVPIEDSLRILERLGF 433 (805)
Q Consensus 370 ~~al~r~~~Li~e~~g--g~~~~~~~~~~~~~~~~~I~l~~~~i~~ilG~~i~~~ei~~iL~~Lgf 433 (805)
..+-.|.+.++.+++. |.... ....-.+.++.+.+-..+|+ +.+.+.+.|++|.=
T Consensus 154 ~~~~~Rla~~Ll~L~~~~g~~~~-------~~~~i~l~lt~~dLA~~lG~--trEtVsR~L~~L~~ 210 (235)
T PRK11161 154 KNAEERLAAFIYNLSRRFAQRGF-------SPREFRLTMTRGDIGNYLGL--TVETISRLLGRFQK 210 (235)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCC-------CCCEEEECCCHHHHHHHHCC--CHHHHHHHHHHHHH
T ss_conf 89999999999999998387788-------88779823789999988789--89999999999997
No 185
>PRK12354 carbamate kinase; Reviewed
Probab=22.76 E-value=44 Score=12.70 Aligned_cols=56 Identities=20% Similarity=0.210 Sum_probs=47.6
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHH
Q ss_conf 13333113458789999999840222103456236640345433440256767676
Q gi|254780316|r 410 EVKRLSGIDVPIEDSLRILERLGFSVIGEYDKFEVSVPSWRQDVEEKADLVEEILR 465 (805)
Q Consensus 410 ~i~~ilG~~i~~~ei~~iL~~Lgf~v~~~~~~~~V~vPs~R~DI~~e~DLiEEIaR 465 (805)
.-.|.+|--++.+|..+.-+..|+.+..++.+|.-.|||=++-=..|.|.|.....
T Consensus 119 ~PtKpIGpfy~~eeA~~l~~~~gw~~~edgrG~RRVVpSP~P~~IvE~~~Ik~L~~ 174 (302)
T PRK12354 119 NPTKPIGPVYSEEEAERLAAEKGWVIKPDGDKFRRVVPSPKPKRIVEIRAIKWLLE 174 (302)
T ss_pred CCCCCCCCCCCHHHHHHHHHHCCCEEECCCCEEEEEECCCCCCEEECHHHHHHHHH
T ss_conf 89986078869999999999749887115880368637999855564999999997
No 186
>KOG0971 consensus
Probab=22.24 E-value=45 Score=12.63 Aligned_cols=54 Identities=11% Similarity=0.016 Sum_probs=37.6
Q ss_pred EEEECCCCCCCCCCEEEEECCCCEECCCCEEEEEEHHCCCCCCCHHHHHHHCCC
Q ss_conf 989754834558978989668779258983983312058650545411887699
Q gi|254780316|r 73 IQVVCGAPNVRVGLLGVWAPPGSCIPENNMIVNVRKIRGIESTGMMCSEKELML 126 (805)
Q Consensus 73 ~~IvcgA~Nv~~g~~V~~A~~Ga~lp~g~~~i~~~~irGv~S~GMlCS~~ELgl 126 (805)
.-.-||+.|+++|.||-|-+.-++=-++|.+-+..-+.--+-+||+.-..-+-+
T Consensus 22 ~VayvG~T~FA~G~WvGVvLDep~GKNnGsVqg~qYF~Cd~ncG~FVr~sq~r~ 75 (1243)
T KOG0971 22 TVAYVGQTQFAEGKWVGVVLDEPKGKNNGSVQGVQYFECDENCGVFVRSSQVRE 75 (1243)
T ss_pred EEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCCEEEEHHHHHH
T ss_conf 479842320034735899833666787872144156753888625741435687
No 187
>COG1458 Predicted DNA-binding protein containing PIN domain [General function prediction only]
Probab=22.08 E-value=45 Score=12.61 Aligned_cols=43 Identities=23% Similarity=0.334 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHH--HHCCCCCCEEEECCCCCCCCCHHHHHHHHH
Q ss_conf 8999999984022--210345623664034543344025676767
Q gi|254780316|r 422 EDSLRILERLGFS--VIGEYDKFEVSVPSWRQDVEEKADLVEEIL 464 (805)
Q Consensus 422 ~ei~~iL~~Lgf~--v~~~~~~~~V~vPs~R~DI~~e~DLiEEIa 464 (805)
.|+...+++-||. +..+-+.|-|.-|+-|+|+.++.++.=|..
T Consensus 57 ~El~~fm~r~gc~~e~~~ki~twivkKtPnryevkiPa~ifyeyV 101 (221)
T COG1458 57 RELMGFMERNGCPEEVIAKIETWIVKKTPNRYEVKIPAAIFYEYV 101 (221)
T ss_pred HHHHHHHHHCCCCHHHHHHHHEEEEECCCCCEEECCCHHHHHHHH
T ss_conf 999999974799688888666036755998223217099999999
No 188
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family; InterPro: IPR014189 Members of this family are putative quinone oxidoreductases that belong to the broader superfamily of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxidoreductases. An alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, consequently members of this entry are likely to be quinone oxidoreductases. A member of this family in Homo sapiens (Human), PIG3, is induced by p53 but is otherwise uncharacterised..
Probab=21.79 E-value=34 Score=13.51 Aligned_cols=17 Identities=29% Similarity=0.483 Sum_probs=9.9
Q ss_pred CCEEEEEE-ECCCHHHHH
Q ss_conf 85599987-087857665
Q gi|254780316|r 153 SDPIIDVS-LTPNRSDCI 169 (805)
Q Consensus 153 ~D~i~ei~-iTpNR~D~l 169 (805)
+..+++|. .==||||||
T Consensus 28 GEVLi~V~AAGVNRPD~l 45 (334)
T TIGR02824 28 GEVLIRVAAAGVNRPDVL 45 (334)
T ss_pred CEEEEEEEEECCCHHHHH
T ss_conf 625899998426827998
No 189
>TIGR03676 aRF1/eRF1 peptide chain release factor 1, archaeal and eukaryotic forms. Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA. This model identifies both archaeal (aRF1) and eukaryotic (eRF1) of the protein. Also known as translation termination factor 1.
Probab=21.75 E-value=46 Score=12.56 Aligned_cols=85 Identities=20% Similarity=0.189 Sum_probs=45.1
Q ss_pred EEEECCCCCCCCHHHCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHCCCCCCHH---HHHHHHHHHH
Q ss_conf 0000256763100111355312013672699997157878887788761654015544134553013---5889998887
Q gi|254780316|r 302 VVIASDGRIQSIAGIIGGKHAGCDDNTTDVLVEVALWDPINIARSGKNLGIITDSRYRFERGVDLQG---MIPVLKHIVS 378 (805)
Q Consensus 302 lvI~d~~~~ialaGImGg~~s~v~~~T~~illEsA~F~p~~Ir~tar~l~l~TdaS~RfERgvd~~~---~~~al~r~~~ 378 (805)
++|-|++. |+-|..-| ++..|+=+...+-|. +|+----|+.||+|=..-.. ...+..+|.+
T Consensus 136 ~ivid~~~--a~~g~l~G-------~~~evl~~~~~~vP~-------Kh~~GGQSa~RF~Rlre~~~h~~~kkvae~a~~ 199 (403)
T TIGR03676 136 LIVLDRRE--ATIGLLKG-------KRIEVLKELTSGVPG-------KHRAGGQSARRFERLIEIAAHEFYKRVGEAANE 199 (403)
T ss_pred EEEEECCC--CEEEEECC-------CEEEEEEEEECCCCC-------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99995797--56999809-------879997898524774-------334563027789999999999999999999998
Q ss_pred HHCCCCCCCCCCCEEEEECCCCCC
Q ss_conf 521233455565258741355431
Q gi|254780316|r 379 LILSLCGGTASDICIARNITYKPR 402 (805)
Q Consensus 379 Li~e~~gg~~~~~~~~~~~~~~~~ 402 (805)
.+.....-.+.++...++.+.++.
T Consensus 200 ~Fl~~~~~~v~GiilgGp~~~K~~ 223 (403)
T TIGR03676 200 AFLPLKDKKLKGILIGGPGPTKEE 223 (403)
T ss_pred HHHCCCCCCEEEEEECCCCHHHHH
T ss_conf 730368755379993378417677
No 190
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase; InterPro: IPR002292 The ornithine carbamoyltransferases are a family of enzymes that catalyse the production of citrulline from carbamoyl-phosphate and ornithine . This reaction is part of the arginine biosynthetic pathway, and in some organisms the reaction is also part of the arginine deaminase pathway . In most prokaryotes, and some lower eukaryotes, the enzyme is found in the cytoplasm, but in higher eukaryotes, such as mammals, the enzyme is found in the mitochondrial matrix and functions as part of the urea cycle. In most organisms analysed to date, the enzyme has been shown to consist of a trimer of identical or nonidentical subunits . Extensive similarity has been found within the ornithine carbamoyltransferase family, some of the conserved areas being important in catalysis . The C-terminal region of these enzymes shows a degree of similarity to the aspartate carbamoyltransferases, which are also known to bind carbamoyl- phosphate . This region contains a highly conserved Cys residue (in a His-Cys-Lys-Pro motif) implicated in ornithine binding . ; GO: 0004585 ornithine carbamoyltransferase activity, 0006520 amino acid metabolic process, 0009348 ornithine carbamoyltransferase complex.
Probab=21.10 E-value=47 Score=12.47 Aligned_cols=91 Identities=15% Similarity=0.143 Sum_probs=40.0
Q ss_pred HHHHCCCCCCCCC-CCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEE-CCCCCCCEEEEEECCCCCCHH--HHH
Q ss_conf 3320112322455-663778788886401321039999989998608700000-102233326886235543114--554
Q gi|254780316|r 216 GFAMCCVKGVRNN-VAPNWMRQRLKAVGLRSISALVDITNYVSLDRGYPSHVF-DASRISDVLTVRRACSGEKIL--ALD 291 (805)
Q Consensus 216 ~y~~~~i~~v~~~-~SP~wl~~rL~~~Gir~inniVDitNyvmle~GqPlHaf-D~dki~~~i~vr~a~~~E~~~--~Ld 291 (805)
|..+|.|.+|-.. -+=.|+++.=.-+++=-||.+-|. =||+=+- |+=+|. |.+= .|+
T Consensus 95 RVLsRyVD~I~~R~~~h~~v~~lA~yasVPVINgLtD~--------~HPcQ~LADllTI~-----------E~~g~~~l~ 155 (341)
T TIGR00658 95 RVLSRYVDGIMARVYKHEDVEELAKYASVPVINGLTDL--------FHPCQALADLLTIK-----------EHFGEKKLK 155 (341)
T ss_pred HHHCCEEEEEEEECCCHHHHHHHHHHCCCCEECCCCCC--------CCHHHHHHHHHHHH-----------HHCCCCCCC
T ss_conf 02031565677732553789999854898546055685--------52379999988898-----------746795600
Q ss_pred HHCCCCCC--CCEEEECC-CCC---CCCHHHCCCCCCCCC
Q ss_conf 20112454--32000025-676---310011135531201
Q gi|254780316|r 292 NQEYDLSP--DNVVIASD-GRI---QSIAGIIGGKHAGCD 325 (805)
Q Consensus 292 ~~e~~L~~--~~lvI~d~-~~~---ialaGImGg~~s~v~ 325 (805)
|-..-+++ ..--|=|+ +++ +-|||.|=|.+..|.
T Consensus 156 g~nkGinsklk~vy~GDgRNNVcnSL~la~a~~Gm~~~v~ 195 (341)
T TIGR00658 156 GVNKGINSKLKVVYVGDGRNNVCNSLLLAAAKLGMDVVVA 195 (341)
T ss_pred HHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCEEEEE
T ss_conf 0003524421689973785126889999999728547887
No 191
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase; InterPro: IPR005941 The lysine/diaminopimelic acid branch of the aspartate pathway produces the essential amino acid lysine via the intermediate meso-diaminopimelic acid (meso-DAP), which is also a vital cell wall component in Gram-negative bacteria . The production of dihydropicolinate from aspartate-semialdehyde controls flux into the lysine/diaminopimelic acid pathway. Three variants of this pathway exist, differing in how tetrahydropicolinate (formed by reduction of dihydropicolinate) is metabolised to meso-DAP. One variant, the most commonly found one in archaea and bacteria, uses primarily succinyl intermediates, while a second variant, found only in Bacillus, utilises primarily acetyl intermediates. In the third variant, found in some Gram-positive bacteria, a dehydrogenase converts tetrahydropicolinate directly to meso-DAP. In all variants meso-DAP is subsequently converted to lysine by a decarboxylase, or, in Gram-negative bacteria, assimilated into the cell wall. Evidence exists that a fourth, currently unknown, variant of this pathway may function in plants . Succinyl-diaminopimelate desuccinylase (3.5.1.18 from EC) hydrolyses N-succinyl-L,L-diaminopimelic acid which is required for the bacterial synthesis of lysine and meso-diaminopimelic acid. This group of bacterial sequences belong to the MEROPS peptidase family M20 (clan MH), subfamily M20A (non-peptidase homologs). ; GO: 0009014 succinyl-diaminopimelate desuccinylase activity, 0009089 lysine biosynthetic process via diaminopimelate.
Probab=20.96 E-value=48 Score=12.46 Aligned_cols=132 Identities=20% Similarity=0.212 Sum_probs=65.2
Q ss_pred HHHHHHHCCC-CCCHH------HHHHHHHHCCCEEEEEECCCCCCCEEEEEEEEEEECCCCC-CCEEEEE--CCCCCEEE
Q ss_conf 6799884789-99889------9999987458604211124656874899999975657998-7089997--59995798
Q gi|254780316|r 5 LSWLKDHLDT-DVSLE------KICDTLTSIGLEVEKVDNREALSPFTIVKVLSVERNPDLD-CAILRID--TGKHQEIQ 74 (805)
Q Consensus 5 ~~WL~~~v~~-~~~~~------~l~~~lt~~G~EVe~i~~~~~~~~vvvg~v~~~~~hP~ad-l~v~~Vd--~g~~~~~~ 74 (805)
...++|+|.. ++||+ =|+++|..+||+.|.++.. |.. |++..-- +|+
T Consensus 2 ~~lak~Lis~pSVTP~D~Gcq~~Ia~rL~~~gF~~e~~~f~------------------d~kN~wa~~g~aif~~----- 58 (383)
T TIGR01246 2 TELAKELISRPSVTPNDAGCQDLIAERLKKIGFEIEILHFG------------------DTKNLWATRGTAIFKD----- 58 (383)
T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECC------------------CCHHHHHHCCEEEECC-----
T ss_conf 12466330378889984778999999984539758998508------------------7344454557146508-----
Q ss_pred EECCCCCCCCCCEEEEECCC--CEECC-CCE--EEEEEHHCCCCCCCHH------HHHHH--CCCCCCCCC-EE-EE---
Q ss_conf 97548345589789896687--79258-983--9833120586505454------11887--699854775-07-81---
Q gi|254780316|r 75 VVCGAPNVRVGLLGVWAPPG--SCIPE-NNM--IVNVRKIRGIESTGMM------CSEKE--LMLSDDSAS-IM-EL--- 136 (805)
Q Consensus 75 IvcgA~Nv~~g~~V~~A~~G--a~lp~-g~~--~i~~~~irGv~S~GMl------CS~~E--Lgl~~~~~g-I~-~l--- 136 (805)
++|++.=+-||=|-+.| -.+.+ +-| .++..+|-|==+-=|= .-+.| +----||.| =+ .|
T Consensus 59 ---~~P~l~F~GHtDVVP~G~~e~W~~s~PF~p~~~dG~lYGRGAaDMKGs~Aafv~AaerFv~~~pdhkGa~islLiTS 135 (383)
T TIGR01246 59 ---GEPVLAFAGHTDVVPAGPLEQWSSSPPFEPVERDGKLYGRGAADMKGSLAAFVVAAERFVKKNPDHKGASISLLITS 135 (383)
T ss_pred ---CCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf ---87658874621211388887788876966346212176265621467899999999999984777784053443330
Q ss_pred CC--CCCCCC-CHHHHHCCCCEEEEEEEC
Q ss_conf 68--888884-558870888559998708
Q gi|254780316|r 137 PI--DAPVGG-RLSDYLELSDPIIDVSLT 162 (805)
Q Consensus 137 ~~--~~~~G~-~~~~~l~l~D~i~ei~iT 162 (805)
|| ++.-|+ .+.+||.--|..||.-|+
T Consensus 136 DEEG~A~dGT~~vve~L~~r~~~IDyc~V 164 (383)
T TIGR01246 136 DEEGEAIDGTKKVVETLMARDELIDYCIV 164 (383)
T ss_pred HCCCCCHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 00133113688999999972589978986
No 192
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=20.82 E-value=48 Score=12.44 Aligned_cols=25 Identities=12% Similarity=0.001 Sum_probs=19.7
Q ss_pred HHHHHHHHHHCCCEEEECCCCCCCE
Q ss_conf 9998999860870000010223332
Q gi|254780316|r 251 DITNYVSLDRGYPSHVFDASRISDV 275 (805)
Q Consensus 251 DitNyvmle~GqPlHafD~dki~~~ 275 (805)
+=.|-+|++.-+..|.-|.|-...+
T Consensus 109 ~DAN~lm~~~~~~fd~IDiDPFGSP 133 (380)
T COG1867 109 KDANALLHELHRAFDVIDIDPFGSP 133 (380)
T ss_pred CHHHHHHHHCCCCCCEEECCCCCCC
T ss_conf 4289998725887637813899997
No 193
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490; InterPro: IPR006385 This group of sequences belong to the IB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences are all bacterial. The IB subfamily includes the enzyme phosphoserine phosphatase. Due to this relationship, several of these sequences have been annotated as "phosphoserine phosphatase related proteins," or "phosphoserine phosphatase-family enzymes." There is presently no evidence that any of the proteins in this family possess PSPase activity. .
Probab=20.76 E-value=48 Score=12.46 Aligned_cols=61 Identities=16% Similarity=0.128 Sum_probs=36.4
Q ss_pred CHHHHHHHHHHHCCCCCCCCCCCCC-CCCCCC----CCCCHHHHHHHHHHHHHHHHHHH--HCCCCCC
Q ss_conf 4025676767653523346676554-434576----78998895467898878778774--0232100
Q gi|254780316|r 455 EKADLVEEILRIYGVDQIKSEPLPL-TQVEDK----RNLSLQQSRTRYVKRVLASRAMM--EVVNWSF 515 (805)
Q Consensus 455 ~e~DLiEEIaRiyGYdnIp~~~l~~-~~~~~~----~~~~~~~~~~~~ir~~L~~~Gf~--Ev~tysl 515 (805)
...=+|+++||.+|.|++=.+-++. ....-. +..........+|++.+....+. ++.-||=
T Consensus 114 S~~~~v~~~A~~~G~~~~~g~~~~~~~dG~~tG~~~G~~~~~~~K~~al~~~~~~~~~~L~~syaY~D 181 (204)
T TIGR01490 114 SLEILVKPLARKLGIDNAIGTRLEEAEDGIYTGEIIGNNCKGEGKVHALAELLAEEQIDLKDSYAYSD 181 (204)
T ss_pred CHHHHHHHHHHHCCCCEEEEEEEEEECCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEEECC
T ss_conf 78899999998718660301200210277055235053235868999999983203788200245318
No 194
>PRK04011 peptide chain release factor 1; Provisional
Probab=20.64 E-value=48 Score=12.41 Aligned_cols=84 Identities=23% Similarity=0.266 Sum_probs=46.2
Q ss_pred EEEECCCCCCCCHHHCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHCCCCCCHH---HHHHHHHHHH
Q ss_conf 0000256763100111355312013672699997157878887788761654015544134553013---5889998887
Q gi|254780316|r 302 VVIASDGRIQSIAGIIGGKHAGCDDNTTDVLVEVALWDPINIARSGKNLGIITDSRYRFERGVDLQG---MIPVLKHIVS 378 (805)
Q Consensus 302 lvI~d~~~~ialaGImGg~~s~v~~~T~~illEsA~F~p~~Ir~tar~l~l~TdaS~RfERgvd~~~---~~~al~r~~~ 378 (805)
++|.|++. |+-|..-|..- .|+=+.-.+-|. +|+----|+.||+|=..-.. ......+|.+
T Consensus 143 ~iviD~~~--a~~g~l~G~~~-------evl~~~~~~vP~-------Kh~~GGQSa~RF~Rlree~~~~f~kkvaE~a~~ 206 (409)
T PRK04011 143 LIVVDRRE--ATIGLLKGKRI-------EVLKELTSFVPG-------KHRAGGQSARRFERLIEIAAHEFYKRVGEHANE 206 (409)
T ss_pred EEEEECCC--CEEEEECCCEE-------EEEEEEEECCCC-------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99994796--26999859789-------998898504774-------235552668999999999999999999999998
Q ss_pred HHCCCCCCCCCCCEEEEECCCCC
Q ss_conf 52123345556525874135543
Q gi|254780316|r 379 LILSLCGGTASDICIARNITYKP 401 (805)
Q Consensus 379 Li~e~~gg~~~~~~~~~~~~~~~ 401 (805)
++.....-.+.++...++.+.+.
T Consensus 207 ~Fl~~~~~~v~GiilgGp~~~K~ 229 (409)
T PRK04011 207 AFLPLLEKKLKGILIGGPGPTKE 229 (409)
T ss_pred HHHCCCCCCEEEEEECCCCHHHH
T ss_conf 74147876437899516835878
No 195
>PRK00029 hypothetical protein; Validated
Probab=20.43 E-value=11 Score=16.97 Aligned_cols=63 Identities=17% Similarity=0.249 Sum_probs=48.2
Q ss_pred CHHHCCCCCCCCCCCCCEE----EEEEECCCHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 0011135531201367269----99971578788877887616540155441345530135889998887521233
Q gi|254780316|r 313 IAGIIGGKHAGCDDNTTDV----LVEVALWDPINIARSGKNLGIITDSRYRFERGVDLQGMIPVLKHIVSLILSLC 384 (805)
Q Consensus 313 laGImGg~~s~v~~~T~~i----llEsA~F~p~~Ir~tar~l~l~TdaS~RfERgvd~~~~~~al~r~~~Li~e~~ 384 (805)
+-|||+.++..|+-.|=+- |++. |||..|-. ++|..=||.=|--|..+.+.+.|+++-+..+-
T Consensus 246 vHGVmNTDNmsI~GeTiDYGP~aFmd~--ydp~~v~n-------~~D~~GRYaf~nQP~i~~WNL~~LaeaL~pLi 312 (487)
T PRK00029 246 VHGVMNTDNMSILGETFDYGPYGFLDD--YDPGFTCN-------HSDHQGRYAFGNQPAIALWNLQRLAQALLPLI 312 (487)
T ss_pred CCCCCCCCCCEEEEEECCCCCCHHHHH--CCCCCCCC-------CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 045123688600134236776012543--58666665-------63898774357775999999999999878761
No 196
>PRK12342 putative electron transfer flavoprotein YdiQ; Provisional
Probab=20.30 E-value=49 Score=12.36 Aligned_cols=126 Identities=14% Similarity=0.194 Sum_probs=55.1
Q ss_pred EEEEEECHHHHHHCCCCCCEEEEEEEHHH--HHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCCC-HHHHHHHHHHCC
Q ss_conf 99854778999966879978999987876--235452024566313689888720018999668879-999999997111
Q gi|254780316|r 665 GYFGEFHPNILDFFGLSNPICGFEVYLDS--IPISQKKRTKTKKVVHLSSLHPVKRDLAFIVDQHIP-AGTLVNIIKNVD 741 (805)
Q Consensus 665 G~iG~ihP~i~~~~~i~~~v~~~EI~ld~--L~~~~~~~~~~~~~~~~s~fP~v~RDls~iv~~~v~-~~~I~~~i~~~~ 741 (805)
|.-|++-|.++..++++.-.++-++.++. +............++ .++|++ +|+.-.-+.+ +-.+...++...
T Consensus 122 ~~tgqvg~~lAe~Lg~P~vt~v~~i~~~~~~~~v~R~~e~g~e~ve--~~lPav---vtv~~~~n~PR~psl~~im~Akk 196 (254)
T PRK12342 122 LYAQQVGLLLGELLQLPVINAVSKIQRQGNKLVVERTLEDDVEVIE--LSLPAV---LCVTSDINVPRIPSMKAILGAGK 196 (254)
T ss_pred CCCCCHHHHHHHHCCCCCEEEEEEEEEECCEEEEEEECCCCEEEEE--ECCCEE---EEEECCCCCCCCCCHHHHHHHCC
T ss_conf 8988578999987099716679999971998999999179679999--779989---99989988557799789998669
Q ss_pred CCEEEEEEEEEEECCCCCCCC-EEEEEEEEEEC---CCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 003576989876367799884-26999999847---79888999999999999999999951
Q gi|254780316|r 742 RLIDDVTVFDVFQGKSLGEGK-KSVAIQVLIQP---LKDTFRDDDIRILMDRIVENVVKKTN 799 (805)
Q Consensus 742 ~ll~~v~lfDvY~g~~i~~gk-kSla~rl~fqs---~~kTLtd~EI~~i~~~ii~~l~~k~g 799 (805)
+-++.+.+-|+ ++.... ..-..++.+-. ..+..-+.+.++..+++++.|++++|
T Consensus 197 K~i~~~~~~dl----g~~~~~~~~~v~~~~~Pp~~~~~~~i~egd~~e~v~~Lv~~Lkee~~ 254 (254)
T PRK12342 197 KPVNQWQASDI----GWSQSAPLAELVSILVPPQTERKHIILDNDSPEAIAELAEHLKKALN 254 (254)
T ss_pred CCCEEECHHHC----CCCCCCCCEEEEEEECCCCCCCCCEEECCCHHHHHHHHHHHHHHHHC
T ss_conf 98508589994----97767786389997479976677668249989999999999988659
No 197
>PHA02241 hypothetical protein
Probab=20.05 E-value=50 Score=12.33 Aligned_cols=133 Identities=21% Similarity=0.270 Sum_probs=71.5
Q ss_pred EEEEEEEEECH--HHHHHCCCCCCEEEEEEEHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEE-EEECCCCCHHHHHHH--
Q ss_conf 99999854778--9999668799789999878762354520245663136898887200189-996688799999999--
Q gi|254780316|r 662 IVLGYFGEFHP--NILDFFGLSNPICGFEVYLDSIPISQKKRTKTKKVVHLSSLHPVKRDLA-FIVDQHIPAGTLVNI-- 736 (805)
Q Consensus 662 ~iiG~iG~ihP--~i~~~~~i~~~v~~~EI~ld~L~~~~~~~~~~~~~~~~s~fP~v~RDls-~iv~~~v~~~~I~~~-- 736 (805)
.++||-.-|.- -+..+||+.+|+|+-|++--. +....+.++|..++.+-..+|-=- |+.+ ++.-.++...
T Consensus 30 eilgys~~le~~eyi~~ny~~~~~~fi~e~~~it----ke~~i~eqry~~y~s~ielkr~ng~f~~~-~i~~~~~~e~fs 104 (182)
T PHA02241 30 EILGYTDSLEDAEYIRDNYGTSNPIFINEYPYIT----KEKLIEEQRYFRYNSYIELKRVNGYFEIS-EINDLQVTEDFS 104 (182)
T ss_pred EEECCCCCHHHHHHHHHCCCCCCCHHHHHCCHHH----HHHHHHHHHHEECCCEEEEEECCCEEEEE-CHHCCCCCEEEE
T ss_conf 6651347477889998525887722323140131----88887675511201147887316758850-000477515465
Q ss_pred HHHCCCCEEEEEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCH---HHHHHHHHHHHHHHHHHHCCEECC
Q ss_conf 97111003576989876367799884269999998477988899---999999999999999995119816
Q gi|254780316|r 737 IKNVDRLIDDVTVFDVFQGKSLGEGKKSVAIQVLIQPLKDTFRD---DDIRILMDRIVENVVKKTNAVLRS 804 (805)
Q Consensus 737 i~~~~~ll~~v~lfDvY~g~~i~~gkkSla~rl~fqs~~kTLtd---~EI~~i~~~ii~~l~~k~ga~LRs 804 (805)
+.+..+.+.+-...|++. .+.-|+++-+.++|.-.-..| ++++....++--.|+..-+|.+||
T Consensus 105 i~k~~~~~dsp~~i~~~~-----~~rnsi~i~~~m~sey~d~edi~~~~~~s~~~kl~~ll~~~k~adirs 170 (182)
T PHA02241 105 INKDDKNFDSPFSINMFS-----HNRNSIGIEFIMFSEYDDKEDIIEKEKNSFLMKLKYLLKHSKEADIRS 170 (182)
T ss_pred ECCCCCCCCCCEEEEEEE-----CCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 547865567867999885-----278736899998301263778999878999999999984044111366
No 198
>COG1904 UxaC Glucuronate isomerase [Carbohydrate transport and metabolism]
Probab=20.03 E-value=37 Score=13.20 Aligned_cols=13 Identities=23% Similarity=0.422 Sum_probs=5.7
Q ss_pred HHCCCCCHHHHHH
Q ss_conf 3113458789999
Q gi|254780316|r 414 LSGIDVPIEDSLR 426 (805)
Q Consensus 414 ilG~~i~~~ei~~ 426 (805)
+.|..++.+|+..
T Consensus 258 l~G~~lt~~E~~~ 270 (463)
T COG1904 258 LAGEALSTEEAEQ 270 (463)
T ss_pred HCCCCCCHHHHHH
T ss_conf 6478788899999
Done!