HHsearch alignment for GI: 254780316 and conserved domain: smart00873
>smart00873 B3_4 B3/4 domain. This domain is found in tRNA synthetase beta subunits as well as in some non tRNA synthetase proteins.
Probab=100.00 E-value=0 Score=362.80 Aligned_cols=172 Identities=38% Similarity=0.732 Sum_probs=168.1
Q ss_pred HHHHHHCCCCCCCCC-CCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCE-EEEEECCCCCCHHHHH
Q ss_conf 123320112322455-66377878888640132103999998999860870000010223332-6886235543114554
Q gi|254780316|r 214 CKGFAMCCVKGVRNN-VAPNWMRQRLKAVGLRSISALVDITNYVSLDRGYPSHVFDASRISDV-LTVRRACSGEKILALD 291 (805)
Q Consensus 214 c~~y~~~~i~~v~~~-~SP~wl~~rL~~~Gir~inniVDitNyvmle~GqPlHafD~dki~~~-i~vr~a~~~E~~~~Ld 291 (805)
T Consensus 1 ~~~~~~~~~~~v~~~~~Sp~~l~~rL~~~g~~~in~iVDi~Nyv~l~~g~P~h~~D~dki~~~~i~l~~a~~~e~~~~l~ 80 (174)
T smart00873 1 CPRYLGRVIRGVKNTRPSPEWLQERLHRAGIRPINNVVDITNYVSLETGQPLHAFDLDKIKGKDIPLRRAKEGETFETLD 80 (174)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEEEECCCCCEEEECC
T ss_conf 99772899989977999859999999985998731767099999999389753433542679838999779997256048
Q ss_pred HHCCCCCCCCEEEECCCCCCCCHHHCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHH
Q ss_conf 20112454320000256763100111355312013672699997157878887788761654015544134553013588
Q gi|254780316|r 292 NQEYDLSPDNVVIASDGRIQSIAGIIGGKHAGCDDNTTDVLVEVALWDPINIARSGKNLGIITDSRYRFERGVDLQGMIP 371 (805)
Q Consensus 292 ~~e~~L~~~~lvI~d~~~~ialaGImGg~~s~v~~~T~~illEsA~F~p~~Ir~tar~l~l~TdaS~RfERgvd~~~~~~ 371 (805)
T Consensus 81 ~~~~~l~~~~~vi~d~~~~~~iagi~G~~~~~v~~~t~~i~le~a~~~~~~ir~t~~~~~l~~d~s~r~e~gvd~~~~~~ 160 (174)
T smart00873 81 GKEYELDEGDLVIADDEGPLALAGVMGGEESEVTENTTNIFLEPAIFSPRTIRITARTLNLFTDASGRFERGVDPELVEL 160 (174)
T ss_pred CCEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEEEEEECHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHH
T ss_conf 84797687532788636671541120676431000510499997587689999999984898688876636899899999
Q ss_pred HHHHHHHHHCCCCC
Q ss_conf 99988875212334
Q gi|254780316|r 372 VLKHIVSLILSLCG 385 (805)
Q Consensus 372 al~r~~~Li~e~~g 385 (805)
T Consensus 161 al~~~~~ll~~~~g 174 (174)
T smart00873 161 ALDRAAALLLEICG 174 (174)
T ss_pred HHHHHHHHHHHHCC
T ss_conf 99999999999749