HHsearch results for GI: 254780316 and protein with PDBid: 3bu2_A
>3bu2_A Putative tRNA-binding protein; structural genomics, PSI-2, protein structure initiative; 2.70A {Staphylococcus saprophyticus subsp}
Probab=100.00 E-value=5.2e-36 Score=273.17 Aligned_cols=133 Identities=29% Similarity=0.526 Sum_probs=120.1
Q ss_pred CCCC-CCHHHHHHHHHHCCCEEEEEECCCCCCCEEEEEEEEEEECCCCC-CCEEEEECCCCCEEEEECCCCCCCCCCEEE
Q ss_conf 7899-98899999987458604211124656874899999975657998-708999759995798975483455897898
Q gi|254780316|r 12 LDTD-VSLEKICDTLTSIGLEVEKVDNREALSPFTIVKVLSVERNPDLD-CAILRIDTGKHQEIQVVCGAPNVRVGLLGV 89 (805)
Q Consensus 12 v~~~-~~~~~l~~~lt~~G~EVe~i~~~~~~~~vvvg~v~~~~~hP~ad-l~v~~Vd~g~~~~~~IvcgA~Nv~~g~~V~ 89 (805)
++++ ...+++.+.|+..|||+|.+.+. ..++|||+|++|+|||||| |++|+||+|+ +.+||||||+|+++|++|+
T Consensus 62 i~l~~~~i~~l~~~l~~~gfe~e~~~d~--~~k~vVG~V~~~~~HP~aDkL~v~~Vd~G~-~~~qIV~ga~n~~~g~~vv 138 (199)
T 3bu2_A 62 IKLTETLVQAFQKAIEAAGFTYKLDADF--TPKFVVGYVETKDKHPDADKLSVLSVDVAT-EKLQIVCGAPNVEAGQKVV 138 (199)
T ss_dssp CCCCHHHHHHHHHHHHHTTCCCCCCCCC--CCSEEEEEEEEEEECTTTSSCEEEEEECSS-CEEEEEECCTTCCTTCEEE
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEECCCC--CCCEEEEEEEEEEECCCCCEEEEEEEECCC-CCEEEEECCCCCCCCCEEE
T ss_conf 1269999999999998769842632457--799799999998965999968999998278-6368995065753676500
Q ss_pred EECCCCEECCCCEEEEEEHHCCCCCCCHHHHHHHCCCCC--CCCCEEEECCCCCCCCCHHH
Q ss_conf 966877925898398331205865054541188769985--47750781688888845588
Q gi|254780316|r 90 WAPPGSCIPENNMIVNVRKIRGIESTGMMCSEKELMLSD--DSASIMELPIDAPVGGRLSD 148 (805)
Q Consensus 90 ~A~~Ga~lp~g~~~i~~~~irGv~S~GMlCS~~ELgl~~--~~~gI~~l~~~~~~G~~~~~ 148 (805)
+|++||+|| ++++|++++|||++|+|||||++|||+++ ++.||++||+++++|+++.+
T Consensus 139 va~~Ga~lp-~g~~I~~~klrGv~S~GMlcS~~ELgl~~~~~~~GIl~l~~d~~vG~~~~~ 198 (199)
T 3bu2_A 139 VAKVGAVMP-SGMVIKDAELRGVASSGMICSMKELGLPNAPQEKGIMVLSDDYTVGQSFFE 198 (199)
T ss_dssp EECTTCBCT-TSCBCCEEEETTEEEESEECCTTTTTCSSCBSCCSCCEECTTSCTTSBSBC
T ss_pred CCCEEEEEC-CCCCCCCCEECCCCCCEEEEEHHHCCCCCCCCCCCEEECCCCCCCCCCCCC
T ss_conf 374479967-887555433225025539820788499877776635999999989994245