HHsearch results for GI: 254780316 and protein with PDBid: 3cmq_A
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A*
Probab=100.00 E-value=1.9e-42 Score=318.84 Aligned_cols=336 Identities=15% Similarity=0.134 Sum_probs=235.7
Q ss_pred HHHHHHHCC---CCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC--C-------HHHH-H-HH
Q ss_conf 767676535---23346676554-4345767899889546789887877877402321004--8-------2576-5-52
Q gi|254780316|r 460 VEEILRIYG---VDQIKSEPLPL-TQVEDKRNLSLQQSRTRYVKRVLASRAMMEVVNWSFI--S-------KEQS-V-LF 524 (805)
Q Consensus 460 iEEIaRiyG---YdnIp~~~l~~-~~~~~~~~~~~~~~~~~~ir~~L~~~Gf~Ev~tysl~--s-------~~~~-~-~~ 524 (805)
+|..++-|+ |.|||+.-+.. ..-...+...+....++++++++.++||.|.-+.-|. + ..++ + ++
T Consensus 15 ~~~~g~~~~~d~~~n~~~~i~~~~g~~l~~~~~HPl~~~~~~i~~~F~~~g~~~~~~~~f~~~d~~~~vet~~~NFD~L~ 94 (415)
T 3cmq_A 15 VELLGKSYPQDDHSNLTRKVLTRVGRNLHNQQHHPLWLIKERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTTWQNFDSLL 94 (415)
T ss_dssp EEETTEEEECCSSCCCCHHHHTTTTCCGGGSTTCHHHHHHHHHHHHHHHHHHHCSSSCCCEEECCCCSEEEHHHHTGGGT
T ss_pred EEECCEECCCCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCEECCCCCC
T ss_conf 99898873577667689868730586666789996899999999999873866357876212589997327414202227
Q ss_pred HHHHHHCC-CC-CCCCCCCCCCCCHHHCHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCC----EEHHHHCC-----
Q ss_conf 00000000-24-677643210151221106776432101586113454302444477754431----00022103-----
Q gi|254780316|r 525 GGGQRELE-IL-NPISADMSNMRTSLLPGLLKATGRNVDRAIADFAIFEVSHVYENDTPEGQK----YMAAGIRK----- 593 (805)
Q Consensus 525 ~~~~~~i~-l~-NPlS~e~s~lR~SLlp~LL~~~~~N~~r~~~~i~lFEiG~Vf~~~~~~~~~----~~~~~~~~----- 593 (805)
.+.+.+-+ +. +---++..+||+..-+...+.+.. +.. +++.+|+||+.+...... +.+.|+.-
T Consensus 95 ~P~dHPaRd~~DTfyl~~~~lLRthts~~q~~~l~~----~~~--~~~~~G~vyR~d~iD~~h~~~FhQ~eg~~v~~~~~ 168 (415)
T 3cmq_A 95 IPADHPSRKKGDNYYLNRTHMLRAHTSAHQWDLLHA----GLD--AFLVVGDVYRRDQIDSQHYPIFHQLEAVRLFSKHE 168 (415)
T ss_dssp CCTTCGGGCGGGSCBSSSSEEECSSGGGGHHHHHHT----TCS--EEEEEEEEECCCCCBTTBCSEEEEEEEEEEEEHHH
T ss_pred CCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHC----CCC--CEEEECCCCCCCCCCCCCCCEEEECCEEEECCCCH
T ss_conf 899987567434167689870468898889999854----899--34764777157987764441123110466314000
Q ss_pred -------CC----CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-CCEEEECCCCCCCCCCCEEEEEECCE
Q ss_conf -------54----3101246202345443333146888753111111101453-33033058865678981699998792
Q gi|254780316|r 594 -------GS----SGIEGSGRLWSDKSEERCRFVDLFDAKADALSVIEPFVSL-DSLRFESGAPSWYHPGRSGIIKTSAE 661 (805)
Q Consensus 594 -------~~----~~~~~~g~~~~~~~~~~~~~~df~dlKg~v~~ll~~l~~~-~~~~~~~~~~~~~hPgrsa~I~~~gk 661 (805)
+. ..-..........|......++||++||.++.++..++.. ..+++.++.++++|||++++|.++|+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~h~~e~~~~e~~~~~~~dLKg~le~ll~~l~~~~~~~r~~~~~fPft~Ps~e~~I~~~~~ 248 (415)
T 3cmq_A 169 LFAGIKDGESLQLFEQSSRSAHKQETHTMEAVKLVEFDLKQTLTRLMAHLFGDELEIRWVDCYFPFTHPSFEMEINFHGE 248 (415)
T ss_dssp HTTTSTTGGGCCSBCCCCCCSSCCTTBCHHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEEETTEEEEEEEEEEETTE
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEEEEECCC
T ss_conf 00123444322211233334321000122111210888999999999996798757998407898767632799998885
Q ss_pred EE-EEEEEEECHHHHHHCCCCCCE-EEEEEEHHHHHHHHH----------------------CCCCCCCCCCCCCCCCCE
Q ss_conf 99-999854778999966879978-999987876235452----------------------024566313689888720
Q gi|254780316|r 662 IV-LGYFGEFHPNILDFFGLSNPI-CGFEVYLDSIPISQK----------------------KRTKTKKVVHLSSLHPVK 717 (805)
Q Consensus 662 ~i-iG~iG~ihP~i~~~~~i~~~v-~~~EI~ld~L~~~~~----------------------~~~~~~~~~~~s~fP~v~ 717 (805)
.+ +|.+|++||.+++++|++.++ ++|.+-++.+..... ......+|+++|+||+++
T Consensus 249 wiei~g~G~vhP~Vl~~~g~~~~~g~AFGlGleRlaml~~~i~DiR~~~~~D~rfl~Qf~~~~~~~~~~y~~~SkyP~v~ 328 (415)
T 3cmq_A 249 WLEVLGCGVMEQQLVNSAGAQDRIGWAFGLGLERLAMILYDIPDIRLFWCEDERFLKQFCVSNINQKVKFQPLSKYPAVI 328 (415)
T ss_dssp EEEEEEEEEECHHHHHHTTCTTEEEEEEEEEHHHHHHHHSCCCCGGGGGCCCHHHHGGGCCSSTTSCCCCCCCCCCCCEE
T ss_pred CCEEEEEECCCHHHHHHCCCCCCEEEEEEEECCHHHHHHCCCCHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCEE
T ss_conf 66687860257999986599876589998732578887616424888863249999861312344334677623489820
Q ss_pred EEEEEEECC-CCCHHHHHHHHHHC-CCCEEEEEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 018999668-87999999999711-1003576989876367799884269999998477988899999999999999999
Q gi|254780316|r 718 RDLAFIVDQ-HIPAGTLVNIIKNV-DRLIDDVTVFDVFQGKSLGEGKKSVAIQVLIQPLKDTFRDDDIRILMDRIVENVV 795 (805)
Q Consensus 718 RDls~iv~~-~v~~~~I~~~i~~~-~~ll~~v~lfDvY~g~~i~~gkkSla~rl~fqs~~kTLtd~EI~~i~~~ii~~l~ 795 (805)
|||||+||. ++++++|.++|+++ ++++++|++||+|+|++. ||||+|||++|||.+|||||+|||+++++|++.|+
T Consensus 329 RDlSf~v~~e~~~~~~l~~~ir~~~g~lle~v~lfD~Y~~~~~--gkkSla~rl~~rs~drTLtd~EVn~i~~~I~~~l~ 406 (415)
T 3cmq_A 329 NDISFWLPSENYAENDFYDLVRTIGGDLVEKVDLIDKFVHPKT--HKTSHCYRITYRHMERTLSQREVRHIHQALQEAAV 406 (415)
T ss_dssp EEEEEECCTTCCCHHHHHHHHHHHHGGGEEEEEEEEEEECTTT--CCEEEEEEEEECCSSSCCCHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEEECCCCC--CCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 0049999179768999999998738271779999987049999--96799999999899988898999999999999999
Q ss_pred HHHCCEEC
Q ss_conf 99511981
Q gi|254780316|r 796 KKTNAVLR 803 (805)
Q Consensus 796 ~k~ga~LR 803 (805)
++|||+||
T Consensus 407 ~~~~~~lR 414 (415)
T 3cmq_A 407 QLLGVEGR 414 (415)
T ss_dssp HHSCCEEC
T ss_pred HHHCEEEC
T ss_conf 97591867