RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780316|ref|YP_003064729.1| phenylalanyl-tRNA synthetase
subunit beta [Candidatus Liberibacter asiaticus str. psy62]
(805 letters)
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer,
phenylalanine, aminoacyl-tRNA synthetase, ATP-binding,
cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus
haemolyticus} PDB: 2rhs_B*
Length = 795
Score = 478 bits (1231), Expect = e-135
Identities = 222/813 (27%), Positives = 398/813 (48%), Gaps = 29/813 (3%)
Query: 1 MKFTLSWLKDHLDTDVSLEKICDTLTSIGLEVEKVDNR-EALSPFTIVKVLSVERNPDLD 59
M + WLKD++D V +E + + +T G+EV+ + + + + + + S E+
Sbjct: 1 MLISNEWLKDYVDAGVKVEDLAERITRTGIEVDNMIDYSKDIKNLVVGYIQSKEKGSG-- 58
Query: 60 CAILRIDTGKHQEIQVVCGAPNVRVGLLGVWAPPGSCIPENNMIVNVRKIRGIESTGMMC 119
I ++D G+ + +Q+VCGAPNV G + A G +P + + K+RG S GM+C
Sbjct: 59 -NICQVDIGEEEPVQIVCGAPNVDAGQHVIVAKVGGRLP-GGIKIKRAKLRGERSEGMIC 116
Query: 120 SEKELMLSDDSAS------IMELPIDAPVGGRLSDYLELSDPIIDVSLTPNRSDCIGVRG 173
S +E+ +S + I P + G L L+D +++ LTPNR+D + + G
Sbjct: 117 SLQEIGISSNVVPKAYENGIFVFPTEVEPGTDALTALYLNDQVMEFDLTPNRADALSMVG 176
Query: 174 IALDLVAAGLGKLKEINISCPLSSESIPLEIKFDLDDSSLCKGFAMCCVKGVRNNVAPNW 233
A ++ A ++ + +SES E+ +D+ ++ VK V +P W
Sbjct: 177 TAYEVAALYQTEMTKPETQSNETSESATNELSVTIDNPEKVPYYSARVVKNVSIEPSPIW 236
Query: 234 MRQRLKAVGLRSISALVDITNYVSLDRGYPSHVFDASRISDVL-TVRRACSGEKILALDN 292
++ RL G+R I+ +VDI+NYV L+ G P H+FD I VR+A E + LDN
Sbjct: 237 VQARLIKAGIRPINNVVDISNYVLLEYGQPLHMFDQDHIGSKEIVVRQAKDEETMTTLDN 296
Query: 293 QEYDLSPDNVVIASDGRIQSIAGIIGGKHAGCDDNTTDVLVEVALWDPINIARSGKNLGI 352
E L ++VI++ ++AG++GG + + TT+V++E A++DP++I + + L +
Sbjct: 297 NERKLVDTDIVISNGQEPIALAGVMGGDFSEVTEQTTNVVIEGAIFDPVSIRHTSRRLNL 356
Query: 353 ITDSRYRFERGVDLQGMIPVLKHIVSLILSLCGGTASDICIAR-NITYKPRKIVFMNSEV 411
+++ RFE+G+ + + + L+ L G ++ ++ I +V
Sbjct: 357 RSEASSRFEKGIATEFVDEAVDRACYLLQELASGEVLQDRVSSGDLGSFVTPIDITAEKV 416
Query: 412 KRLSGIDVPIEDSLRILERLGFSVIGEYDKFEVSVPSWRQDVEEKADLVEEILRIYGVDQ 471
+ G ++ ++ I +LGF + + V+VPS R+D+ K DL+EE+ RIYG D+
Sbjct: 417 NKTIGFNLSNDEIQSIFRQLGFETTLKGETLTVNVPSRRKDITIKEDLIEEVARIYGYDE 476
Query: 472 IKSEPLPLTQVEDKRNLSLQQSRTRYVKRVLASRAMMEVVNWSFISKEQSVLFGGGQREL 531
I S LP+ L+ +Q +TR +K L + + + +S +SK+ + F +R
Sbjct: 477 IPSS-LPVFGEVTSGELTDRQHKTRTLKETLEGAGLNQAITYSLVSKDHAKDFALQERPT 535
Query: 532 -EILNPISADMSNMRTSLLPGLLKATGRNVDRAIADFAIFEVSHVYENDTPEGQKYMAAG 590
+L P+S + +R SLLP L++AT NV R D ++E+ V+ +
Sbjct: 536 ISLLMPMSEAHATLRQSLLPHLIEATAYNVARKNKDVRLYEIGRVFFGNGEGELPDEVEY 595
Query: 591 IRKGSSGIEGSGRLWSDKSEERCRFVDLFDAKADALSVIEPFVSLDSLRFESGAPSWYHP 650
+ SGI + + ++ +D F AK V E +++G HP
Sbjct: 596 L----SGILTGEYVVNAWQGKKEE-IDFFIAKGVVDRVAEKLN--LEFSYKAGKIEGLHP 648
Query: 651 GRSGIIKTSAEIVLGYFGEFHPNILDFFGLSNPICGFEVYLDSIPISQKKRTKTKKVVHL 710
GR+ I+ + + G+ GE HP + L FE+ D++ +++
Sbjct: 649 GRTAIVSLEGQDI-GFIGELHPQVAADNDL-KRTYVFELNYDAMMQVAVGYINYEQI--- 703
Query: 711 SSLHPVKRDLAFIVDQHIPAGTLVNIIKNVDR-LIDDVTVFDVFQGKSLGEGKKSVAIQV 769
V RD+A V+ +P+ L II N ++ VFDV++G+ L +GKKSVAI++
Sbjct: 704 PKFPGVTRDIALEVNHDVPSSELKQIIHNNGEDILQSTLVFDVYEGEHLEKGKKSVAIRL 763
Query: 770 LIQPLKDTFRDDDIRILMDRIVENVVKKTNAVL 802
+DT D+ + + D+I+E ++ A +
Sbjct: 764 NYLDTEDTLTDERVSKIHDKILEA-LQAEGATI 795
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta
homodimer; HET: FYA; 2.50A {Thermus thermophilus} SCOP:
a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1
PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B*
2amc_B* 3hfz_B* 2iy5_B*
Length = 785
Score = 471 bits (1212), Expect = e-133
Identities = 227/813 (27%), Positives = 371/813 (45%), Gaps = 43/813 (5%)
Query: 1 MKFTLSWLKDHLDTDVSLEKICDTLTSIGLEVEKVDNR-EALSPFTIVKVLSVERNPDLD 59
M+ SWLK ++ S E + + L +G E ++++ +VL P
Sbjct: 1 MRVPFSWLKAYVPELESPEVLEERLAGLGFETDRIERVFPIPRGVVFARVLEAHPIPGTR 60
Query: 60 CAILRIDTGKHQEIQVVCGAPNVRVGLLGVWAPPGSCIPENNMIVNVRKIRGIESTGMMC 119
L +D G+ ++VV GA N R G+ A PG+ +P V R I+G+ S GM
Sbjct: 61 LKRLVLDAGR--TVEVVSGAENARKGIGVALALPGTELPGLGQKVGERVIQGVRSFGMAL 118
Query: 120 SEKELMLSDDSASIMELPIDAPVGGRLSDYLELSDPIIDVSLTPNRSDCIGVRGIALDLV 179
S +EL + + ++E P DA G + ++D+ +TPNR D +G+ G+A DL
Sbjct: 119 SPRELGVGEYGGGLLEFPEDALPPGTPLSEAWPEEVVLDLEVTPNRPDALGLLGLARDLH 178
Query: 180 AAGLGKLKEINISCPLSSESIPLEIKFDLDDSSLCKGFAMCCVKGVRNNVAPNWMRQRLK 239
A G ++ E++PL ++D F + G+R +P WM++ L
Sbjct: 179 ALGYALVEPEAALKA---EALPLPFALKVEDPEGAPHFTLGYAFGLRVAPSPLWMQRALF 235
Query: 240 AVGLRSISALVDITNYVSLDRGYPSHVFDASRISDVLTVRRACSGEKILALDNQEYDLSP 299
A G+R I+ +VD+TNYV L+R P H FD + + + VRRA GE++ LD E L P
Sbjct: 236 AAGMRPINNVVDVTNYVMLERAQPMHAFDLRFVGEGIAVRRAREGERLKTLDGVERTLHP 295
Query: 300 DNVVIA----SDGRIQSIAGIIGGKHAGCDDNTTDVLVEVALWDPINIARSGKNLGIITD 355
+++VIA + +AG++GG + ++T + +EVA +DP++I ++ + G+ T+
Sbjct: 296 EDLVIAGWRGEESFPLGLAGVMGGAESEVREDTEAIALEVACFDPVSIRKTARRHGLRTE 355
Query: 356 SRYRFERGVDLQGMIPVLKHIVSLILSLCGGTASDICIARNITYKPRKIVFMNSEVKRLS 415
+ +RFERGVD G +P + +SL+ +L G ++ + P I F RL
Sbjct: 356 ASHRFERGVDPLGQVPAQRRALSLLQALAGARVAEALLEAGSPKPPEAIPFRPEYANRLL 415
Query: 416 GIDVPIEDSLRILERLGFSVIGEYDKFEVSVPSWRQDVEEKADLVEEILRIYGVDQIKSE 475
G P + + IL+RLG V GE + V+ PS R D+ + DLVEE+ RI G + I
Sbjct: 416 GTSYPEAEQIAILKRLGCRVEGEGPTYRVTPPSHRLDLRLEEDLVEEVARIQGYETIPLA 475
Query: 476 PLPLTQVEDKRNLSLQQSRTRYVKRVLASRAMMEVVNWSFISKEQSVLFGGGQRELEILN 535
D R + + + ++ VL+ EV +SF+ E + F L +LN
Sbjct: 476 LPAFFPAPDNRGVEAPYRKEQRLREVLSGLGFQEVYTYSFMDPEDARRFRLDPPRLLLLN 535
Query: 536 PISADMSNMRTSLLPGLLKATGRNVDR----AIADFAIFEVSHVYENDTPEGQKYMAAGI 591
P++ + + +RT L PGL++ N+D F + V E G +
Sbjct: 536 PLAPEKAALRTHLFPGLVRVLKENLDLDRPERALLFEVGRVFREREETHLAGLLFGE--- 592
Query: 592 RKGSSGIEGSGRLWSDKSEERCRFVDLFDAKADALSVIEPFVSLDSLRFESGAPSWYHPG 651
+ R F K ++ + R E+ A + HPG
Sbjct: 593 -------------GVGLPWAKERLSGYFLLKGYLEALFARLG--LAFRVEAQAFPFLHPG 637
Query: 652 RSGIIKTSAEIVLGYFGEFHPNILDFFGLSNPICGFEVYLDSIPISQKKRTKTKKVVHLS 711
SG + E V G+ G HP I L P+ FE+ L K S
Sbjct: 638 VSGRVLVEGEEV-GFLGALHPEIAQELEL-PPVHLFELRLPLP-------DKPLAFQDPS 688
Query: 712 SLHPVKRDLAFIVDQHIPAGTLVNIIKNVDR-LIDDVTVFDVFQGKSLGEGKKSVAIQVL 770
RDLA +V P G + +++ ++ + +FD++QG L EG KS+A +
Sbjct: 689 RHPAAFRDLAVVVPAPTPYGEVEALVREAAGPYLESLALFDLYQGPPLPEGHKSLAFHLR 748
Query: 771 IQPLKDTFRDDDIRILMDRIVENVVKKTNAVLR 803
+ K T RD+++ + R+ E ++ LR
Sbjct: 749 FRHPKRTLRDEEVEEAVSRVAEA-LRARGFGLR 780
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A
{Homo sapiens}
Length = 589
Score = 319 bits (818), Expect = 1e-87
Identities = 95/611 (15%), Positives = 202/611 (33%), Gaps = 63/611 (10%)
Query: 108 KIRGIESTGMMCSEKELMLSDDSASIMELPIDAPVGGRLSDYLELSDPIIDVSLTPNRSD 167
+ E +C E L L + E I + G + + + + NR D
Sbjct: 17 RTYTDEEFDELCFEFGLELDEI---TSEKEIISKEQGNVKAAGASDVVLYKIDVPANRYD 73
Query: 168 CIGVRGIALDLVAAGLGKLKEINISCPLSSESIPLEIKFDLDDSSLCKGFAMCCVKGVRN 227
+ + G+ L ++K + + ++ + + + ++ ++
Sbjct: 74 LLCLEGLVRGL-QVFKERIKAPVYK-RVMPDGKIQKLIITEETAKIRPFAVAAVLRNIKF 131
Query: 228 NVA----PNWMRQRLKAVGLRSISALVDITNYVSLDRGYPSHVFDASRISDVLTVRRACS 283
++++L R ALV I + P + +
Sbjct: 132 TKDRYDSFIELQEKLHQNICRKR-ALVAIGTHDLDTLSGPFTYTAKR--PSDIKFKPLNK 188
Query: 284 GEKILALDNQEYDLSPDNVVIASDGRIQSIAGIIGGKHAGCDDNTTDVLVEVALWDPINI 343
++ A + + +++ + I ++ V++ + P I
Sbjct: 189 TKEYTACELMNIYKTDNHL-------KHYLHIIENKPLYPVIYDSNGVVLSM----PPII 237
Query: 344 ARSGKNLGIITDSRYRFERGVDLQGMIPVLKHIVSLILSLCGGTAS---------DICIA 394
+ + T + + G D VL IV++ C + +
Sbjct: 238 NGDHSRITVNTRNIFIECTGTDFTKAKIVLDIIVTMFSEYCENQFTVEAAEVVFPNGKSH 297
Query: 395 RNITYKPRKIVFMNSEVKRLSGIDVPIEDSLRILERLG--FSVIGEYDKFEVSVPSWRQD 452
RK + + + GI E+ ++L R+ VIG+ ++ E+ +P R D
Sbjct: 298 TFPELAYRKEMVRADLINKKVGIRETPENLAKLLTRMYLKSEVIGDGNQIEIEIPPTRAD 357
Query: 453 VEEKADLVEEILRIYGVDQIKSEPLPLTQVEDKRNLSLQQSRTRYVKRVLASRAMMEVVN 512
+ D+VE+ YG + I+ + ++ L T ++ +A+ E +
Sbjct: 358 IIHACDIVEDAAIAYGYNNIQMTLPKTYTIANQFPL---NKLTELLRHDMAAAGFTEALT 414
Query: 513 WSFISKEQSVLFGG----GQRELEILNPISADMSNMRTSLLPGLLKATGRNVDRAIADFA 568
++ S+E G + + I NP +A+ RT+LLPGLLK N +
Sbjct: 415 FALCSQEDIADKLGVDISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPL-PLK 473
Query: 569 IFEVSHVYENDTPEGQKYMAAGIRKGSSGIEGSGRLWSDKSEERCRFVDLFDAKADALSV 628
+FE+S + D+ G+ ++ +K+ +
Sbjct: 474 LFEISDIVIKDSNTDV---------GAKNYRHLCAVYYNKN------PGFEIIHGLLDRI 518
Query: 629 -----IEPFVSLDSLRFESGAPSWYHPGRSGIIKTSAEIVLGYFGEFHPNILDFFGLSNP 683
+ P ++ + PGR I + V G G HP+++ F L+ P
Sbjct: 519 MQLLDVPPGEDKGGYVIKASEGPAFFPGRCAEIFARGQSV-GKLGVLHPDVITKFELTMP 577
Query: 684 ICGFEVYLDSI 694
E+ +
Sbjct: 578 CSSLEINIGPF 588
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis S2}
Length = 701
Score = 231 bits (589), Expect = 6e-61
Identities = 56/449 (12%), Positives = 138/449 (30%), Gaps = 53/449 (11%)
Query: 350 LGIITDSRYRFERGVDLQGMIPVLKHIVSLILSLCGGTASDICIARNITYKPRKIVFMNS 409
G++ + F+R ++ + L + +Y K VF
Sbjct: 11 SGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINE------SYPRIKPVFG-- 62
Query: 410 EVKRLSGIDVPIEDSLRILERLGFSVIG------EYDKFEVSVPSW---RQDV-EEKADL 459
+ ++ IE+ + R+GF E D ++ P
Sbjct: 63 ---KTHPVNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLP 119
Query: 460 VEEILRIYGVDQIKSEPLPLTQVEDKRNLSLQQSRTRYVKRVLASRAMMEVVNWSFISKE 519
++ + +V + + + + ++E+ N IS E
Sbjct: 120 RPDVGLSDEKISQIEKLG--IKVSEHKESLQKILHGYKKGTLDGDDLVLEISNALEISSE 177
Query: 520 QSVLFGGGQRELEILNPISADMSNMRTSLLPGLLKATGRNVDRAIADFAIFEVSHVYEND 579
+ + +R+ + G +++ F +F + + +
Sbjct: 178 MGLKILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRRE 237
Query: 580 TPEGQKYMAAGIRKGSSGIEGSGRLWSDKSEERCRFVDLFDAKADALSVIEPFVSLD-SL 638
E + ++ + + VD+ D KA A ++ F +
Sbjct: 238 QKEDKSHLMTYHS-----ASC---AIAGEG------VDINDGKAIAEGLLSQFGFTNFKF 283
Query: 639 RFESGAPSWYHPGRSGII-----KTSAEIVLGYFGEFHPNILDFFGLSNPICGFEVYLDS 693
+ +Y P + K + + FG + P L +G+ P+ + ++
Sbjct: 284 IPDEKKSKYYTPETQTEVYAYHPKLKEWLEVATFGVYSPVALSKYGIDVPVMNLGLGVER 343
Query: 694 IPISQKKRTKTKKVVHLS-SLHPV-KRDLAFIV--DQHIPAGTLVNIIKNVDRLID---- 745
+ + +++V+ H + R++A +V D+ + ++ K +
Sbjct: 344 LAMISGNFADVREMVYPQFYEHKLNDRNVASMVKLDKVPVMDEIYDLTKELIESCVKNKD 403
Query: 746 --DVTVFDVFQGKSLGEGKKSVAIQVLIQ 772
+ + S G+ KK+V I + +
Sbjct: 404 LKSPCELAIEKTFSFGKTKKNVKINIFEK 432
>2cxi_A Phenylalanyl-tRNA synthetase beta chain; aminoacyl-tRNA synthetase,
ligase, structural genomics, NPPSFA; HET: MSE; 1.94A
{Pyrococcus horikoshii OT3}
Length = 348
Score = 191 bits (487), Expect = 4e-49
Identities = 61/377 (16%), Positives = 130/377 (34%), Gaps = 43/377 (11%)
Query: 103 IVNVRKIRGIESTGMMCSEKELMLSDDSASIMELPIDAPVGGRLSDYLELSDPIIDVSLT 162
+V K G S +E +D + +D + E +
Sbjct: 3 KFDVSKSDLERLIGRSFSIEEW---EDLVLYAKCELD-------DVWEENGKVYFKLDSK 52
Query: 163 -PNRSDCIGVRGIALDLVAAGLGKLKEINISCPLSSESIPLEIKFDLDDSSLCKGFAMCC 221
NR D G+A + LG K + + + + D +
Sbjct: 53 DTNRPDLWSAEGVARQI-KWALGIEKGLPK---YEVKKSNVTVYVDEKLKDIRPYGVYAI 108
Query: 222 VKGVRNNVAPNWMRQRLKAVGLRSISALVDITNYVSLD-----RGYPSHVFDASRISDVL 276
V+G+R + S+S ++ + ++L R +FD +I +
Sbjct: 109 VEGLR--------------LDEDSLSQMIQLQEKIALTFGRRRREVAIGIFDFDKIKPPI 154
Query: 277 TVRRACSGEKILALDNQEYDLSPDNVVIASDGRIQSIAGIIGGKHAGCDDNTTDVLVEVA 336
+ A EK L +E + + GR + D+ +VL
Sbjct: 155 YYKAAEKTEKFAPLGYKEEMTLEEILEKHEKGREYGHLIKDKQFYPLLIDSEGNVLS--- 211
Query: 337 LWDPINIARSGKNLGIITDSRYRFERGVDLQGMIPVLKHIVSLILSLCGGTASDICIARN 396
PI + + T + + G L+ ++ L +V+ + G S + ++
Sbjct: 212 -MPPIINSEFTGRVTTDTKNVFIDVTGWKLEKVMLALNVMVTALAERGGKIRSVRVVYKD 270
Query: 397 IT-----YKPRKIVFMNSEVKRLSGIDVPIEDSLRILERLGFSVIGEYDKFEVSVPSWRQ 451
P++ +++LSG+++ + +LE++ + V + ++ P++R
Sbjct: 271 FEIETPDLTPKEFEVELDYIRKLSGLELNDGEIKELLEKMMYEVEISRGRAKLKYPAFRD 330
Query: 452 DVEEKADLVEEILRIYG 468
D+ D++E++L YG
Sbjct: 331 DIMHARDILEDVLIAYG 347
Score = 29.7 bits (66), Expect = 2.9
Identities = 7/36 (19%), Positives = 15/36 (41%)
Query: 1 MKFTLSWLKDHLDTDVSLEKICDTLTSIGLEVEKVD 36
+ S L+ + S+E+ D + E++ V
Sbjct: 4 FDVSKSDLERLIGRSFSIEEWEDLVLYAKCELDDVW 39
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold,
RRM domain, RNA recogntion, aminoacyl-tRNA synthetase,
ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB:
3hfv_A*
Length = 415
Score = 152 bits (385), Expect = 3e-37
Identities = 59/412 (14%), Positives = 115/412 (27%), Gaps = 74/412 (17%)
Query: 457 ADLVEEILRIYGVDQIKSEPLPLTQVEDKRNLSLQQ----SRTRY-VKRVLASRAMMEVV 511
+VE + + Y D + RNL QQ + VK + +
Sbjct: 12 GSVVELLGKSYPQDDHSNLT-RKVLTRVGRNLHNQQHHPLWLIKERVKEHFYKQYVGRFG 70
Query: 512 NWSFISKEQSVLFGGGQRELEILN-------------PISADMSNMRTSLLPGLLKATGR 558
F + + + L +R
Sbjct: 71 TPLFSVYDNLSPVVTTWQNFDSLLIPADHPSRKKGDNYYLNRTHMLRAHTSAHQWDLLHA 130
Query: 559 NVDRAIADFAIFEVSHVYENDTPEGQKY----------------MAAGIRKGSSGIEGSG 602
+D V VY D + Q Y + AGI+ G S
Sbjct: 131 GLDA------FLVVGDVYRRDQIDSQHYPIFHQLEAVRLFSKHELFAGIKDGESLQLFEQ 184
Query: 603 RLWSDKSEE----RCRFVDLFDAKADALSVIEP-FVSLDSLRFESGAPSWYHPGRSGIIK 657
S +E + FD K ++ F +R+ + HP I
Sbjct: 185 SSRSAHKQETHTMEAVKLVEFDLKQTLTRLMAHLFGDELEIRWVDCYFPFTHPSFEMEIN 244
Query: 658 TSAE-IVLGYFGEFHPNILDFFGLSNPI-CGFEVYLDSIPI------------------- 696
E + + G +++ G + I F + L+ + +
Sbjct: 245 FHGEWLEVLGCGVMEQQLVNSAGAQDRIGWAFGLGLERLAMILYDIPDIRLFWCEDERFL 304
Query: 697 ---SQKKRTKTKKVVHLSSLHPVKRDLAFIVD-QHIPAGTLVNIIKNVDR-LIDDVTVFD 751
+ K LS V D++F + ++ ++++ + L++ V + D
Sbjct: 305 KQFCVSNINQKVKFQPLSKYPAVINDISFWLPSENYAENDFYDLVRTIGGDLVEKVDLID 364
Query: 752 VFQGKSLGEGKKSVAIQVLIQPLKDTFRDDDIRILMDRIVENVVKKTNAVLR 803
F K S ++ + ++ T ++R + + E V+ R
Sbjct: 365 KFVHP--KTHKTSHCYRITYRHMERTLSQREVRHIHQALQEAAVQLLGVEGR 414
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, beta subunit,
structural genomics, PSI-2, protein structure
initiative; HET: TAM; 2.44A {Porphyromonas gingivalis}
Length = 213
Score = 137 bits (345), Expect = 1e-32
Identities = 41/212 (19%), Positives = 76/212 (35%), Gaps = 5/212 (2%)
Query: 487 NLSLQQSRTRYVKRVLASRAMMEVVNWSFISKEQSVLFGGGQRE--LEILNPISADMSNM 544
N + V L E++N S + RE +E++NP+S +++ M
Sbjct: 2 NADRRYKWQTVVSEQLVGAGFNEILNNSLTAGSYYEGLKSHPREMAVELMNPLSQELNCM 61
Query: 545 RTSLLPGLLKATGRNVDRAIADFAIFEVSHVY--ENDTPEGQKYMAAGIRKGSSGIEGSG 602
R +LL G L+ N+ R +FE Y + +AA GI G
Sbjct: 62 RQTLLFGGLETLSHNLRRKHLSLYLFEWGKCYRFHAAKRTDETPLAAYAEDDRLGIWICG 121
Query: 603 RLWSDKSEERCRFVDLFDAKADALSVIEPFVSLDSLRFESGAPSWYHPGRSGIIKTSAEI 662
+ + +F+ KA V+ A + + + S ++
Sbjct: 122 QRVHNSWAHPEEPTSVFELKAVVEQVLCRVGIETGAYTLKTADNDLYASAMEVKTRSGKL 181
Query: 663 VLGYFGEFHPNILDFFGLSNPICGFEVYLDSI 694
+ G FG ++ F + P+ E+ D++
Sbjct: 182 L-GTFGTVSTELIKRFEIEQPVYFAELLWDAL 212
>3bu2_A Putative tRNA-binding protein; structural genomics, PSI-2, protein
structure initiative; 2.70A {Staphylococcus
saprophyticus subsp}
Length = 199
Score = 100 bits (250), Expect = 1e-21
Identities = 40/138 (28%), Positives = 70/138 (50%), Gaps = 7/138 (5%)
Query: 14 TDVSLEKICDTLTSIGLEVEKVDNREALSPFTIVKVLSVERNPDLD-CAILRIDTGKHQE 72
T+ ++ + + G + + F + V + +++PD D ++L +D +
Sbjct: 65 TETLVQAFQKAIEAAGFTYKLDAD--FTPKFVVGYVETKDKHPDADKLSVLSVDVATE-K 121
Query: 73 IQVVCGAPNVRVGLLGVWAPPGSCIPENNMIVNVRKIRGIESTGMMCSEKELMLSD--DS 130
+Q+VCGAPNV G V A G+ +P + M++ ++RG+ S+GM+CS KEL L +
Sbjct: 122 LQIVCGAPNVEAGQKVVVAKVGAVMP-SGMVIKDAELRGVASSGMICSMKELGLPNAPQE 180
Query: 131 ASIMELPIDAPVGGRLSD 148
IM L D VG +
Sbjct: 181 KGIMVLSDDYTVGQSFFE 198
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, PSI, MCSG,
structural genomics, midwest center for structural
genomics; HET: MSE; 2.09A {Bacteroides fragilis}
Length = 213
Score = 98.9 bits (245), Expect = 4e-21
Identities = 44/213 (20%), Positives = 81/213 (38%), Gaps = 7/213 (3%)
Query: 487 NLSLQQSRTRYVKRVLASRAMMEVVNWSFISKEQSVLFGGGQRE--LEILNPISADMSNM 544
N V L E++N S + + +LNP+SAD++ M
Sbjct: 2 NADKSNKLQNLVAEQLVGCGFNEILNNSLTRAAYYDGLESYPSKNLVMLLNPLSADLNCM 61
Query: 545 RTSLLPGLLKATGRNVDRAIADFAIFEVSHVYENDTPE--GQKYMAAGIRKGSSGIEGSG 602
R +LL G L++ N +R AD FE + Y D + +K +A G+ +G
Sbjct: 62 RQTLLFGGLESIAHNANRKNADLKFFEFGNCYHFDAEKKNPEKVLAPYSEDYHLGLWVTG 121
Query: 603 RLWSDKSEERCRFVDLFDAKADALSVIEPF-VSLDSLRFESGAPSWYHPGRSGIIKTSAE 661
++ S+ +++ KA ++ + + L SL + + Y + K
Sbjct: 122 KMVSNSWAHADENTSVYELKAYVENIFKRLGLDLHSLVVGNLSDDIYSTALTVNTK--GG 179
Query: 662 IVLGYFGEFHPNILDFFGLSNPICGFEVYLDSI 694
L FG +L F + N + ++ +
Sbjct: 180 KRLATFGVVTKKMLKAFDVDNEVYYADLNWKEL 212
>2e8g_A Hypothetical protein PH0536;
oligonucleotide/oligosaccharide-binding fold,
alpha-helices bundle, structural genomics, NPPSFA; 1.70A
{Pyrococcus horikoshii}
Length = 241
Score = 91.2 bits (226), Expect = 9e-19
Identities = 25/117 (21%), Positives = 43/117 (36%), Gaps = 18/117 (15%)
Query: 46 IVKVLSVERNPDLD-CAILRIDTGKHQEIQVVCGAPNVRVGLLGVWAPPGSCIPENNMIV 104
+ +V+SV ++P D + ++ G+ + VV V+ G A
Sbjct: 140 VGEVMSVGKHPSADRLLVTNVNIGERA-VTVVTNDLTVKEGNRVAVALLPP--------- 189
Query: 105 NVRKIRGIESTGMMCSEKELMLSDDSASIMELPIDAPVGGRLSDYLELSDPIIDVSL 161
R GI S GM E +L + I LP P+ + L + ++ L
Sbjct: 190 --RNFFGIVSEGMFLGAGEGVLKNVKGEIGGLPKGIPL-----EALNETRNAVEAFL 239
>1fl0_A Endothelial-monocyte activating polypeptide II; RNA-binding domain,
OB-fold, tRNA synthetase complex, RNA binding protein;
1.50A {Homo sapiens} SCOP: b.40.4.4 PDB: 1e7z_A 1euj_A
Length = 171
Score = 83.5 bits (206), Expect = 2e-16
Identities = 27/176 (15%), Positives = 60/176 (34%), Gaps = 29/176 (16%)
Query: 30 LEVEKVDNREALSPFTIVKVLSVERNPDLDCA-ILRIDTGKHQEIQVVCGAPNVRVGLLG 88
++V ++D I +++ ++PD D + +D G+ VV G N
Sbjct: 1 IDVSRLD-------LRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQM 53
Query: 89 VWAPPGSCIPENNMIVNVRKIRGIESTGMMCSEKELMLSDDSASIMELPIDAPVGGRLSD 148
+ K+RG+ S M+ + I+ P + G R++
Sbjct: 54 QNRMVILL-----CNLKPAKMRGVLSQAMVMCASS----PEKIEILAPPNGSVPGDRITF 104
Query: 149 YLELSDPIIDV------------SLTPNRSDCIGVRGIALDLVAAGLGKLKEINIS 192
+P ++ L N +G+ ++ G+ + + ++ S
Sbjct: 105 DAFPGEPDKELNPKKKIWEQIQPDLHTNDECVATYKGVPFEVKGKGVCRAQTMSNS 160
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 71.5 bits (175), Expect = 7e-13
Identities = 88/580 (15%), Positives = 165/580 (28%), Gaps = 230/580 (39%)
Query: 184 GKLKEINISCP--------------LSSESIPLEIKFDLDD--SS---LCKGFAMCCVKG 224
G L E + P P E F DD ++ L F
Sbjct: 14 GSL-EHVLLVPTASFFIASQLQEQFNKILPEPTE-GFAADDEPTTPAELVGKFLGYVSSL 71
Query: 225 VRNNVAPNWMRQRLKAV---------GLRSISALVDITNYVSLDRGYPSHVFDASRISDV 275
V + Q L I AL L + + + +
Sbjct: 72 VEPS-KVGQFDQVLNLCLTEFENCYLEGNDIHALA-----AKLLQENDTTLVKTKEL--- 122
Query: 276 LTVR---RACSGEKILALDNQEYDLSPDNVVI--ASDGRIQSIAGIIGGKHAGCDDNTTD 330
++ A + + +D ++ + +G Q + I GG+ G D+ +
Sbjct: 123 --IKNYITAR------IMAKRPFDKKSNSALFRAVGEGNAQ-LVAIFGGQ--GNTDDYFE 171
Query: 331 VLVEVALWD-------PINIARSGKNLGIIT----DSRYRFERGVDLQGMI------PVL 373
L + L+ + I S + L + D+ F +G+++ + P
Sbjct: 172 ELRD--LYQTYHVLVGDL-IKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDK 228
Query: 374 KHIVS------LI--LSLCGGTASDICIARNITYKPRKIVFMNSEVKRLS-------GID 418
+++S LI + L + T P + + S L G+
Sbjct: 229 DYLLSIPISCPLIGVIQLAHYVVT--AKLLGFT--PGE---LRS---YLKGATGHSQGLV 278
Query: 419 VPI------------EDSLRILERLGFSVIG--EYDKFEVSV--PSWRQDVEEKADLVEE 462
+ + + L F IG Y+ + + PS +D E E
Sbjct: 279 TAVAIAETDSWESFFVSVRKAITVL-FF-IGVRCYEAYPNTSLPPSILEDSLENN----E 332
Query: 463 -----ILRIYGVDQIKSEPLPLTQVE---DKRNLSLQQSRTRYVKRVLASRAMMEVVNWS 514
+L I L QV+ +K N L + + V ++ + VV+
Sbjct: 333 GVPSPMLSISN--------LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNL--VVSGP 382
Query: 515 FIS----------------KEQS-VLFGGGQRELEILN---PISA--------------- 539
S +QS + F +R+L+ N P+++
Sbjct: 383 PQSLYGLNLTLRKAKAPSGLDQSRIPFS--ERKLKFSNRFLPVASPFHSHLLVPASDLIN 440
Query: 540 -DM----------------------SNMR---TSLLPGLLKA-TGRNVD--RAIADFAIF 570
D+ S++R S+ ++ V F
Sbjct: 441 KDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQ----F 496
Query: 571 EVSHVYENDTPEGQKYMAAGIRKGSSGI--------EGSG 602
+ +H+ D G G+SG+ +G+G
Sbjct: 497 KATHIL--DFGPG----------GASGLGVLTHRNKDGTG 524
Score = 67.3 bits (164), Expect = 1e-11
Identities = 106/700 (15%), Positives = 172/700 (24%), Gaps = 337/700 (48%)
Query: 3 FTLSWLKD----HL--DTDVSLEKICDTLTS--------IGLEVEKVDNREALSPFTIVK 48
F S L++ L T+ D T+ +G V+ + ++
Sbjct: 28 FIASQLQEQFNKILPEPTEGFAAD--DEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLN 85
Query: 49 VL--SVERNPDLDCAILRIDTGKHQEIQVVCGAPNVRVGLLGVWAPPGSCIPENNMIV-- 104
+ E L G +I + LL + + + ++
Sbjct: 86 LCLTEFENC------YLE---GN--DIHALAAK------LLQ---ENDTTLVKTKELIKN 125
Query: 105 --NVRKIRGIESTGMMCSEKELM--LSDDSASIMELPIDAPVGGR--LSDYL-ELSD--- 154
R + S L + + +A ++ A GG+ DY EL D
Sbjct: 126 YITARIMAKRPFDKK--SNSALFRAVGEGNAQLV-----AIFGGQGNTDDYFEELRDLYQ 178
Query: 155 -------PIIDVS------LTPNRSDCIGVRGIALDLVA--------AGLGKLKEINISC 193
+I S L D V L+++ L I ISC
Sbjct: 179 TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC 238
Query: 194 PLSSESIPLEIKFDLDDSSLCKGFAMCC-VKG-----VRNN------------------V 229
PL I + L + + + G +R+
Sbjct: 239 PL----IGV--------IQLAH-YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAE 285
Query: 230 APNW---MRQRLKAV------GLRSISALVDITNYVSLDRGYPSHVFDASRISD------ 274
+W KA+ G+R A YP+ S + D
Sbjct: 286 TDSWESFFVSVRKAITVLFFIGVRCYEA-------------YPNTSLPPSILEDSLENNE 332
Query: 275 -----VLTVRRACSGEKI------------------LALDNQEYDLSPDNVVIASDGRIQ 311
+L++ + E++ ++L N N+V++ G Q
Sbjct: 333 GVPSPMLSIS-NLTQEQVQDYVNKTNSHLPAGKQVEISLVN-----GAKNLVVS--GPPQ 384
Query: 312 SIAGIIGGKHAGCDDNTTDVLVEVALWDPINIARSGKNLGIITDSRYRFERGVDLQGMIP 371
S+ G+ N T L + K G+D Q IP
Sbjct: 385 SLYGL----------NLT--LRKA------------KA-----------PSGLD-QSRIP 408
Query: 372 VLKHIVSLILSLCGGTASDICIARNITYKPRKIVFMNSEVKRLSGIDVPIEDSL------ 425
+ RK+ F N R + P L
Sbjct: 409 ---------------------------FSERKLKFSN----RFLPVASPFHSHLLVPASD 437
Query: 426 RILERLGFSVIGEYDKFEVS---VPSWR----QDV-EEKADLVEEILRIYGVDQIKSEPL 477
I + L + + F +P + D+ + E I VD I P
Sbjct: 438 LINKDLVKNNV----SFNAKDIQIPVYDTFDGSDLRVLSGSISERI-----VDCIIRLP- 487
Query: 478 PLTQVEDKRNLSLQQSRTRYVKRVLASRAMMEVVNWSFISKEQS--------VLFG-GGQ 528
V W E + + FG GG
Sbjct: 488 ---------------------------------VKW-----ETTTQFKATHILDFGPGG- 508
Query: 529 RELEILNPISADMSNMRTSLLPGLLKATGRNVD----RAI 564
GL T RN D R I
Sbjct: 509 --------------------ASGLGVLTHRNKDGTGVRVI 528
Score = 65.0 bits (158), Expect = 7e-11
Identities = 87/542 (16%), Positives = 146/542 (26%), Gaps = 224/542 (41%)
Query: 421 IEDSLRILERLGFSVIGEYDKFEVSVP----SWRQDVEEKADLVEEILRIYG--VDQIKS 474
+E L + F ++F +P + D +E E + + G +
Sbjct: 16 LEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAAD-DEPTTPAELVGKFLGYVSSLV-- 72
Query: 475 EPLPLTQVEDKRNLSLQQSRTRY-----------------------VKRVLAS--RAMME 509
EP + Q + NL L + Y K ++ + A
Sbjct: 73 EPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITAR-I 131
Query: 510 VVNWSFISKEQSVLF-----G--------GGQ-------RELEILNPISADMSNMRTSLL 549
+ F K S LF G GGQ EL D+ L+
Sbjct: 132 MAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEEL-------RDLYQTYHVLV 184
Query: 550 PGLLKATGRNVDRAIADFAIFEVSHVY------------ENDTPEGQKYMAA-------- 589
L+K + + I + V+ ++TP + Y+ +
Sbjct: 185 GDLIKFSAETLSELIRT--TLDAEKVFTQGLNILEWLENPSNTP-DKDYLLSIPISCPLI 241
Query: 590 GI--------------------R---KGSSG----------IEGSGRLWSDKSEERCRFV 616
G+ R KG++G I + W F
Sbjct: 242 GVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAET-DSWES-------F- 292
Query: 617 DLFDAKADALSV----------------IEPFVSLDSLRFESGAPSWY----HPGRSGII 656
F + A++V + P + DSL G PS + + +
Sbjct: 293 --FVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQ 350
Query: 657 KT----------SAEIVLGYFGEFHPNILDFFGLSNP---ICGFEVYLDS---------- 693
++ + N +S P + G + L
Sbjct: 351 DYVNKTNSHLPAGKQVEISLV-----NGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQS 405
Query: 694 -IPISQKKRTKTKKVVH--LSSLHPVKRDLAFIVDQHIP--AGTLVNIIKNVDRLIDDVT 748
IP S++K K + L PV F H D + D+
Sbjct: 406 RIPFSERK----LKFSNRFL----PVA--SPF----HSHLLVPA-------SDLINKDLV 444
Query: 749 VFDV-FQGKSLGEGKKSVAIQVLIQPLKDTFRDDDIR--------ILMDRIVENVVKKTN 799
+V F K + I P+ DTF D+R ++D I+ VK
Sbjct: 445 KNNVSFNAKDI-------QI-----PVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWET 492
Query: 800 AV 801
Sbjct: 493 TT 494
Score = 49.6 bits (118), Expect = 3e-06
Identities = 62/342 (18%), Positives = 111/342 (32%), Gaps = 136/342 (39%)
Query: 6 SWLKDHLDTDVSLEKICDTLTSIGLEVEKVDNREALSPFTIVK------------VLSVE 53
SW + S+ K L IG+ + +L P +I++ +LS+
Sbjct: 288 SW--ESFFV--SVRKAITVLFFIGVRCYEAYPNTSLPP-SILEDSLENNEGVPSPMLSI- 341
Query: 54 RN---PDLDCAILRID-TGKH----QEIQV--VCGAPNVRVGLLGVWAPPGS-CIPENNM 102
N + ++ T H +++++ V GA N+ V G PP S +
Sbjct: 342 SNLTQEQVQD---YVNKTNSHLPAGKQVEISLVNGAKNLVVS--G---PPQSLY----GL 389
Query: 103 IVNVRKIR---GIESTGMMCSEKELMLSDDSASIMELPIDAPVGGRLSDYLELSDPIIDV 159
+ +RK + G++ + + SE++L S+ LP+ +P S L
Sbjct: 390 NLTLRKAKAPSGLDQSRIPFSERKLKFSNRF-----LPVASPFH---SHLLV-------- 433
Query: 160 SLTPNRSDCIGVRGIALDLVAAGLGKLKEINISCPLSSESIPLEIKFDLDD--------- 210
A DL+ L + N+S IP+ +D D
Sbjct: 434 --------------PASDLI---NKDLVKNNVSFNAKDIQIPV---YDTFDGSDLRVLSG 473
Query: 211 ---SSLCKGFAMCCVKGVRNNVAPNWMRQRLKAVGLRSISALVDITNYVSLDRGYPSHV- 266
+ + V W ++ +H+
Sbjct: 474 SISERIVD--CIIR-----LPV--KW----ETTTQFKA------------------THIL 502
Query: 267 -FDASRISD--VLTVR-RACSGEK-ILA--LDNQEYDLSPDN 301
F S VLT R + +G + I+A LD +PD+
Sbjct: 503 DFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDI-----NPDD 539
Score = 37.6 bits (87), Expect = 0.011
Identities = 38/195 (19%), Positives = 82/195 (42%), Gaps = 51/195 (26%)
Query: 120 SEKELM----LSDDSASIME------------LPIDAPVGGR-LSDYLELSDPIIDVSLT 162
SEK L+ + + ++ME +P DA G L +Y L+ + DV
Sbjct: 1721 SEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALAS-LADVMSI 1779
Query: 163 PNRSDCIGVRGIALDLVAA--GLGK----LKEIN---ISCPLSSESIPLEIKFDLDDSSL 213
+ + + RG+ + + LG+ + IN ++ S E++ ++ ++
Sbjct: 1780 ESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEAL----QYVVERVGK 1835
Query: 214 CKGFAMCCVKGVRNNVAPNWMRQRLKAVG-LRSISALVDITNYVSLDRGYPSHVFDASRI 272
G+ V+ V NV Q+ A G LR++ + ++ N++ L +
Sbjct: 1836 RTGW---LVEIVNYNVE----NQQYVAAGDLRALDTVTNVLNFIKLQK------------ 1876
Query: 273 SDVLTVRRACSGEKI 287
D++ ++++ S E++
Sbjct: 1877 IDIIELQKSLSLEEV 1891
>1ntg_A Tyrrs, tyrosyl-tRNA synthetase; beta barrel, ligase; 2.21A {Homo
sapiens} SCOP: b.40.4.4
Length = 172
Score = 64.9 bits (158), Expect = 7e-11
Identities = 26/157 (16%), Positives = 56/157 (35%), Gaps = 17/157 (10%)
Query: 31 EVEKVDNREALSPFTIVKVLSVERNPDLDCA-ILRIDTGKHQEIQVVCGAPNVRVGLLGV 89
E E+V + + K+++VE++PD D + +ID G+ + VV G
Sbjct: 1 EPEEVIP--SRLDIRVGKIITVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPK---- 54
Query: 90 WAPPGSCIPENNMIVNVRKIRGIESTGMMCSEKELMLSDDSASIMELPIDAPVGGRLSDY 149
+ + +K+RG+ES GM+ ++ ++ P + G + +
Sbjct: 55 -EELQDRLVVVLCNLKPQKMRGVESQGMLLCASIEGINRQV-EPLDPPAGSAPGEHV--F 110
Query: 150 LELSDPIIDVSLTPNRSD-----CIGVRGIALDLVAA 181
++ I+ + +A
Sbjct: 111 VK-GYEKGQPDEELKPKKKVFEKLQADFKISEECIAQ 146
>1mkh_A Metrs;, C-terminal domain of methionyl-tRNA synthetase; beta
barrel, dimerization domain, ligase; 2.01A {Pyrococcus
abyssi} SCOP: b.40.4.4
Length = 107
Score = 61.0 bits (148), Expect = 9e-10
Identities = 19/117 (16%), Positives = 47/117 (40%), Gaps = 18/117 (15%)
Query: 31 EVEKVDNREALSPFTIVKVLSVERNPDLDCA-ILRIDTGKHQEIQVVCGAPNVRVGLLGV 89
+ K+D R + K++ V+ +P+ D ++++D G +V G
Sbjct: 7 DFAKLDLR-------VGKIIEVKDHPNADKLYVVKVDLGDE-VRTLVAGLKKYYKPE--- 55
Query: 90 WAPPGSCIPENNMIVNVRKIRGIESTGMMCSEKELMLSDDSASIMELPIDAPVGGRL 146
+ + +K+RGI S GM+ + + + +++ + +G ++
Sbjct: 56 -ELLNRYVV-VVANLEPKKLRGIGSQGMLLAADD----GERVALLMPDKEVKLGAKV 106
>2nzh_A Protein CSAA; beta barrel, oligonucleotide/oligosaccharide binding
fold, homodimer, chaperone; 1.90A {Bacillus subtilis}
PDB: 2nzo_A
Length = 113
Score = 55.8 bits (134), Expect = 3e-08
Identities = 16/118 (13%), Positives = 37/118 (31%), Gaps = 6/118 (5%)
Query: 29 GLEVEKVDNREALSPFTIVKVLSVERNPDLDCAILRIDTGKHQEIQVVCGAPNVRVGLLG 88
G + +D+ E L ++ E P+ +++ EI + + +
Sbjct: 1 GSHMAVIDDFEKLD-IRTGTIVKAEEFPEARVPAIKLVIDFGTEIGIKQSSAQITKRYKP 59
Query: 89 VWAPPGSCIPENNMIVNVRKIRGIESTGMMCSEKELMLSDDSASIMELPIDAPVGGRL 146
I N R+I G +S ++ +++ P G ++
Sbjct: 60 EGLINKQVIAVVNF--PPRRIAGFKSEVLVLGGIP---GQGDVVLLQPDQPVPNGTKI 112
>2cwp_A Metrs related protein; structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; 2.10A
{Pyrococcus horikoshii}
Length = 112
Score = 53.9 bits (129), Expect = 1e-07
Identities = 23/118 (19%), Positives = 42/118 (35%), Gaps = 9/118 (7%)
Query: 29 GLEVEKVDNREALSPFTIVKVLSVERNPDLDCAILRIDTGKHQEIQVVCGAPNVRVGLLG 88
+E+ VD + V E+ I I ++E +V G +
Sbjct: 3 YMELYDVDEFWKFQ-MKVGLVKKAEKIKRTKKLIKLIVDFGNEERTIVTGIADQIP---- 57
Query: 89 VWAPPGSCIPENNMIVNVRKIRGIESTGMMCSEKELMLSDDSASIMELPIDAPVGGRL 146
G + + +K G+ES GM+ + D ++ +P + PVG R+
Sbjct: 58 PEELEGKKFI-FVVNLKPKKFSGVESQGMLILAET---EDGKVYLIPVPEEVPVGARV 111
>1pxf_A Hypothetical protein YGJH; oligonucleotide-oligosaccharide binding
fold, OB fold, beta- barrel; 1.87A {Escherichia coli}
SCOP: b.40.4.4 PDB: 3ers_X
Length = 111
Score = 50.6 bits (121), Expect = 1e-06
Identities = 20/118 (16%), Positives = 44/118 (37%), Gaps = 18/118 (15%)
Query: 31 EVEKVDNREALSPFTIVKVLSVERNPDLDCA-ILRIDTGKHQEIQVVCGAPNVRVG-LLG 88
+ +++ R + K++ V+R+ + D I+++D G+ V P L+G
Sbjct: 8 DFARLEMR-------VGKIVEVKRHENADKLYIVQVDVGQKTLQTVTSLVPYYSEEELMG 60
Query: 89 VWAPPGSCIPENNMIVNVRKIRGIESTGMMCSEKELMLSDDSASIMELPIDAPVGGRL 146
+ + K+RG S M+ + + ++ P G R+
Sbjct: 61 KTVVVLCNLQK-------AKMRGETSECMLLCAET--DDGSESVLLTPERMMPAGVRV 109
>1gd7_A CSAA protein; oligonucleotide-binding fold, functional dimer,
hydrophobic cavity, riken structural genomics/proteomics
initiative, RSGI; 2.00A {Thermus thermophilus} SCOP:
b.40.4.4
Length = 109
Score = 50.3 bits (120), Expect = 2e-06
Identities = 11/117 (9%), Positives = 33/117 (28%), Gaps = 15/117 (12%)
Query: 31 EVEKVDNREALSPFTIVKVLSVERNPDLDCA-ILRIDTGKHQEIQVVCGAPNVRVGLLGV 89
+ +D R + +VL E + ++
Sbjct: 6 AFQILDLR-------VGRVLRAEPHEKARKPSYKLWVDLGPLGVKQSSAQITELYR---P 55
Query: 90 WAPPGSCIPENNMIVNVRKIRGIESTGMMCSEKELMLSDDSASIMELPIDAPVGGRL 146
G + + + +++ G S ++ + ++ + P+GG++
Sbjct: 56 EDLVGRLVVCA-VNLGAKRVAGFLSEVLVLGVPD---EAGRVVLLAPDREVPLGGKV 108
>1pyb_A Methionyl-tRNA synthetase beta subunit; oligonucleotide,
oligosaccharide-binding fold, OB-fold, beta-barrel, RNA
binding protein; 2.50A {Aquifex aeolicus} SCOP: b.40.4.4
Length = 111
Score = 46.4 bits (110), Expect = 2e-05
Identities = 31/120 (25%), Positives = 49/120 (40%), Gaps = 22/120 (18%)
Query: 31 EVEKVDNREALSPFTIVKVLSVERNPDLDCAILRIDTGKHQEIQVVCGAPNVRVGLLGVW 90
+ KVD R + KVLS ER + + + +E VV G +
Sbjct: 11 DFLKVDLR-------VAKVLSAERVEGSEKLLKLTLSLGDEERTVVAGIAK--------Y 55
Query: 91 APPGSCIPENNMIVN---VRKIRGIESTGMMCSEKELMLSDDSASIMELPIDAPVGGRLS 147
P + + +IV RKI GIES GM+ + + ++ S++ D G +LS
Sbjct: 56 YTPEELVGKKIVIVANLKPRKIFGIESQGMILAASD----GENLSVIVPDRDVKEGAKLS 111
>3g48_A Chaperone CSAA; structural genomics, niaid structural genomic
centers for infectious diseases; 1.50A {Bacillus
anthracis}
Length = 112
Score = 40.3 bits (94), Expect = 0.002
Identities = 20/124 (16%), Positives = 40/124 (32%), Gaps = 27/124 (21%)
Query: 31 EVEKVDNREALSPFTIVKVLSVERNPDLDCAILR--IDTGKHQEIQVVCGAPN--VRVGL 86
+ +D R I V E + +R ID G+ Q L
Sbjct: 9 DFLTLDLR-------IGTVTHAEEFKEARVPAIRLEIDFGELGMKQSSAQITKRYNPEDL 61
Query: 87 LGVWAPPGSCIPENNMIVNV--RKIRGIESTGM-MCSEKELMLSDDSASIMELPIDAPVG 143
+G +VN +++ G +S + + E +++ ++ P G
Sbjct: 62 IGQQIV---------AVVNFPPKRVAGFKSEVLVLGGVPE----AGDVVLLQPNMELPNG 108
Query: 144 GRLS 147
++S
Sbjct: 109 TKIS 112
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A
{Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Length = 722
Score = 39.1 bits (90), Expect = 0.004
Identities = 22/121 (18%), Positives = 50/121 (41%), Gaps = 34/121 (28%)
Query: 34 KVDNREALSPFTIVKVLSVERNPDLD-CAILRIDTGKHQEIQVVCG-----APNVRVGLL 87
K+D R + K++ V+ +P+ D ++++D G +V G P +
Sbjct: 625 KLDLR-------VGKIIEVKDHPNADKLYVVKVDLGDEVR-TLVAGLKKYYKPEELLNRY 676
Query: 88 GVWAPPGSCIPENNMIVNV--RKIRGIESTGM-MCSEKELMLSDDSASIMELPIDAPVGG 144
V ++ N+ +K+RGI S GM + ++ + +++ + +G
Sbjct: 677 VV------------VVANLEPKKLRGIGSQGMLLAADD-----GERVALLMPDKEVKLGA 719
Query: 145 R 145
+
Sbjct: 720 K 720
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis S2}
Length = 685
Score = 35.7 bits (82), Expect = 0.037
Identities = 47/290 (16%), Positives = 86/290 (29%), Gaps = 46/290 (15%)
Query: 421 IEDSLRILERLGFSVIGEYDKFEVS-------VPSW---RQDVEEKADLVEEILRIYGVD 470
IE+ + R+GF P A L + +
Sbjct: 71 IENLRQAYLRMGFEEY-INPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEK 129
Query: 471 QIKSEPLPLTQVEDKRNLSLQQSRTRYVKRVL-ASRAMMEVVNWSFISKEQSVLFGGGQR 529
+ E L + E K SLQ+ Y K L ++E+ N IS E +
Sbjct: 130 ISQIEKLGIKVSEHKE--SLQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVF 187
Query: 530 ELEILNPISADMSNMRTSLLPGLLKATGRNVDRAIADFAIFEVSHVYENDTPEGQKYMAA 589
+ +R+ + G +++ F +F + + + E + ++
Sbjct: 188 PEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMT 247
Query: 590 GIRKGSSGIEGSGRLWSDKSEERCRFVDLFDAKADALSVIEPF------VSLDSLRFESG 643
+ + VD+ D KA A ++ F D + +
Sbjct: 248 -----YHSASC---AIAGEG------VDINDGKAIAEGLLSQFGFTNFKFIPDEKKSKYY 293
Query: 644 APSW------YHPGRSGIIKTSAEIVLGYFGEFHPNILDFFGLSNPICGF 687
P YHP + E+ FG + P L +G+ P+
Sbjct: 294 TPETQTEVYAYHPKLKEWL----EV-AT-FGVYSPVALSKYGIDVPVMNL 337
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis S2}
Length = 665
Score = 35.3 bits (81), Expect = 0.057
Identities = 47/290 (16%), Positives = 86/290 (29%), Gaps = 46/290 (15%)
Query: 421 IEDSLRILERLGFSVIGEYDKFEVS-------VPSW---RQDVEEKADLVEEILRIYGVD 470
IE+ + R+GF P A L + +
Sbjct: 71 IENLRQAYLRMGFEEY-INPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEK 129
Query: 471 QIKSEPLPLTQVEDKRNLSLQQSRTRYVKRVL-ASRAMMEVVNWSFISKEQSVLFGGGQR 529
+ E L + E K SLQ+ Y K L ++E+ N IS E +
Sbjct: 130 ISQIEKLGIKVSEHKE--SLQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVF 187
Query: 530 ELEILNPISADMSNMRTSLLPGLLKATGRNVDRAIADFAIFEVSHVYENDTPEGQKYMAA 589
+ +R+ + G +++ F +F + + + E + ++
Sbjct: 188 PEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMT 247
Query: 590 GIRKGSSGIEGSGRLWSDKSEERCRFVDLFDAKADALSVIEPF------VSLDSLRFESG 643
+ + VD+ D KA A ++ F D + +
Sbjct: 248 -----YHSASC---AIAGEG------VDINDGKAIAEGLLSQFGFTNFKFIPDEKKSKYY 293
Query: 644 APSW------YHPGRSGIIKTSAEIVLGYFGEFHPNILDFFGLSNPICGF 687
P YHP + E+ FG + P L +G+ P+
Sbjct: 294 TPETQTEVYAYHPKLKEWL----EV-AT-FGVYSPVALSKYGIDVPVMNL 337
>3hj7_A TRNA(Ile)-lysidine synthase; helix-turn-helix, pseudo-knot,
ATP-binding, cytoplasm, ligase, nucleotide-binding, tRNA
processing; 2.20A {Geobacillus kaustophilus}
Length = 142
Score = 34.5 bits (79), Expect = 0.088
Identities = 16/97 (16%), Positives = 31/97 (31%), Gaps = 15/97 (15%)
Query: 252 ITNYVSLDRGYPSHVFDASRISDVLTVRRACSGEKILALDN----------QEYDLSPDN 301
+Y G V D + +S L VR G++++ E +
Sbjct: 30 GEHYPRKQAGNDWFVVDPASVSLPLRVRTRRRGDRMVLKGTGGTKKLKEIFIEAKIPRME 89
Query: 302 -----VVIASDGRIQSIAGIIGGKHAGCDDNTTDVLV 333
+V +DGRI + G+ + ++
Sbjct: 90 RDRWPIVEDADGRILWVPGLKKSAFEAQNRGQARYIL 126
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.2 bits (77), Expect = 0.11
Identities = 13/57 (22%), Positives = 18/57 (31%), Gaps = 29/57 (50%)
Query: 455 EKADL--VEEILRIYGVDQIKSEPLPLTQVEDKRNLSLQQSRTRYVKRVLASRAMME 509
EK L ++ L++Y D S P LA +A ME
Sbjct: 18 EKQALKKLQASLKLYADD---SAP------------------------ALAIKATME 47
Score = 31.9 bits (71), Expect = 0.51
Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 25/52 (48%)
Query: 582 EGQKYMAAGIRKGSSGIEGSGRLWSDKSEERCRFVDLFDAKADALSV---IE 630
E Q ++K ++ S +L++D S A AL++ +E
Sbjct: 18 EKQ-----ALKK----LQASLKLYADDS-------------APALAIKATME 47
Score = 31.1 bits (69), Expect = 1.1
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 15/30 (50%)
Query: 121 EKE--------LML-SDDSA---SI---ME 135
EK+ L L +DDSA +I ME
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATME 47
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis S2}
Length = 648
Score = 33.4 bits (76), Expect = 0.20
Identities = 46/291 (15%), Positives = 85/291 (29%), Gaps = 48/291 (16%)
Query: 421 IEDSLRILERLGFSVIGEYDKFEVS-------VPSW---RQDVEEKADLVEEILRIYGVD 470
IE+ + R+GF P A L + +
Sbjct: 71 IENLRQAYLRMGFEEY-INPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEK 129
Query: 471 QIKSEPLPLTQVEDKRNLSLQQSRTRYVKRVL-ASRAMMEVVNWSFISKEQSVLFGGGQR 529
+ E L + E K SLQ+ Y K L ++E+ N IS E +
Sbjct: 130 ISQIEKLGIKVSEHKE--SLQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVF 187
Query: 530 ELEILNPISADMSNMRTSLLPGLLKATGRNVDRAIADFAIFEVSHVYENDTPEGQKYMAA 589
+ +R+ + G +++ F +F + + + E + ++
Sbjct: 188 PEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMT 247
Query: 590 GIRKGSSGIEGSGRLWSDKSEERCRFVDLFDAKADALSVIEPFVSLD-SLRFESGAPSWY 648
+ + VD+ D KA A ++ F + + +Y
Sbjct: 248 -----YHSASC---AIAGEG------VDINDGKAIAEGLLSQFGFTNFKFIPDEKKSKYY 293
Query: 649 HPGRSGIIKTSAEI------------VLGYFGEFHPNILDFFGLSNPICGF 687
P T E+ V FG + P L +G+ P+
Sbjct: 294 TPE------TQTEVYAYHPKLKEWLEVAT-FGVYSPVALSKYGIDVPVMNL 337
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA
complex; 3.65A {Geobacillus kaustophilus}
Length = 464
Score = 32.3 bits (72), Expect = 0.38
Identities = 16/95 (16%), Positives = 31/95 (32%), Gaps = 15/95 (15%)
Query: 254 NYVSLDRGYPSHVFDASRISDVLTVRRACSGEKILALDN----------QEYDLSPDN-- 301
+Y G V D + +S L VR G++++ E +
Sbjct: 362 HYPRKQAGNDWFVVDPASVSLPLRVRTRRRGDRMVLKGTGGTKKLKEIFIEAKIPRMERD 421
Query: 302 ---VVIASDGRIQSIAGIIGGKHAGCDDNTTDVLV 333
+V +DGRI + G+ + ++
Sbjct: 422 RWPIVEDADGRILWVPGLKKSAFEAQNRGQARYIL 456
>2q2i_A AGR_C_4014P, secretion chaperone; beta barrel, OB fold, homodimer,
protein secretion; 1.55A {Agrobacterium tumefaciens str}
Length = 116
Score = 32.1 bits (73), Expect = 0.49
Identities = 20/122 (16%), Positives = 39/122 (31%), Gaps = 24/122 (19%)
Query: 31 EVEKVDNREALSPFTIVKVLSVERNPDLDCAILR--IDTGKHQEIQVVCGAPNVRVGLLG 88
+ EKVD R + ++ P+ ++ ID G I+ +
Sbjct: 12 DFEKVDIR-------VGTIVEAVPFPEARKPAIKVKIDFGPEIGIKKS-------SAQIT 57
Query: 89 VWAPPGSCIPENNMIV-NV--RKIRGIESTGM-MCSEKELMLSDDSASIMELPIDAPVGG 144
V P S + + V N R+I S + + + + + P G
Sbjct: 58 VHYTPESLVGRQVLGVVNFPPRQIGPFRSEVLTLGFADA----NGDIVLAAVERPVPNGE 113
Query: 145 RL 146
++
Sbjct: 114 KM 115
>2zin_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, pyrrolysine,
ATP analogue, non-natural amino acid, unnatural amino
acid, ATP-binding; HET: ANP LBY; 1.79A {Methanosarcina
mazei} PDB: 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 2q7e_A*
2q7g_A* 2q7h_A* 2zim_A*
Length = 291
Score = 31.6 bits (71), Expect = 0.67
Identities = 10/80 (12%), Positives = 26/80 (32%), Gaps = 1/80 (1%)
Query: 616 VDLFDAKADALSVIEPFVSLDSLRFESGAPSWYHPGRSGIIKTSAEIVLGYFGEFHPNIL 675
+ + + S+I F++ + F+ S + ++ L +
Sbjct: 187 MGSGCTRENLESIITDFLNHLGIDFKIVGDS-CMVYGDTLDVMHGDLELSSAVVGPIPLD 245
Query: 676 DFFGLSNPICGFEVYLDSIP 695
+G+ P G L+ +
Sbjct: 246 REWGIDKPWIGAGFGLERLL 265
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain,
phosphoprotein, conjugation pathway, signaling
protein-ligase complex; 2.00A {Mus musculus}
Length = 176
Score = 28.8 bits (64), Expect = 4.5
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 676 DFFGLSNPICGFEVYLDSIPISQKKRTKTKKVVHLSSLHPV 716
D G S+P +Y I +TKT K SL+P
Sbjct: 24 DILGASDPYVRVTLYDPMSGILTSVQTKTIK----KSLNPK 60
>3f5b_A Aminoglycoside N(6')acetyltransferase; APC60744, legionella
pneumophila subsp. pneumophila, structural genomics,
PSI-2; HET: MSE; 2.00A {Legionella pneumophila subsp}
Length = 182
Score = 28.9 bits (63), Expect = 4.6
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 422 EDSLRILERLGFSVIGEYDKFEVSVPSWR 450
E ++ + ++ GF +IGE+ VP ++
Sbjct: 139 ERAVHVYKKAGFEIIGEFIASWHPVPHYK 167
>2zw5_A Bleomycin acetyltransferase; dimer, two domains; HET: COA; 2.40A
{Streptomyces verticillus} PDB: 2zw4_A* 2zw6_A 2zw7_A*
Length = 301
Score = 28.5 bits (63), Expect = 5.8
Identities = 6/30 (20%), Positives = 11/30 (36%)
Query: 424 SLRILERLGFSVIGEYDKFEVSVPSWRQDV 453
SL + R+G + + P + V
Sbjct: 140 SLAVAARVGLTERARLAQHYPHRPGPHEMV 169
>1c25_A CDC25A; hydrolase, cell cycle phosphatase,dual specificity protein
phosphatase, CDK2; 2.30A {Homo sapiens} SCOP: c.46.1.1
Length = 161
Score = 28.6 bits (63), Expect = 5.9
Identities = 13/74 (17%), Positives = 22/74 (29%), Gaps = 3/74 (4%)
Query: 189 INISCPLSSESIPLEIKFDLDDSSLCKGFAMCCVKGVRNNVAPNWMRQRLKAVGLRSISA 248
+N+ E L+ D C R ++R+R +
Sbjct: 65 VNLHMEEEVEDFLLKKPIVPTDGKRVIVVFHCEFSSERGPRMCRYVRERDRLGNEYPKLH 124
Query: 249 LVDITNYVSLDRGY 262
++ YV L GY
Sbjct: 125 YPEL--YV-LKGGY 135
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A
{Homo sapiens}
Length = 508
Score = 28.5 bits (63), Expect = 6.4
Identities = 25/142 (17%), Positives = 39/142 (27%), Gaps = 19/142 (13%)
Query: 558 RNVDRAIADFAIFEVSHVYENDTPEGQKYMAAGIRKGSSGIEGSGRLWSDKSEERCRFVD 617
+N+ R A + P + R + + L E D
Sbjct: 321 KNLLRTHTTSASARALYRLAQKKPFTPVKYFSIDRVFRNETLDATHLAEFHQIEGV-VAD 379
Query: 618 LFDAKADALSVIEPFVSLDS---LRFESG-----APSW----YHPGRSGIIKTSAEIVLG 665
+ V+ F + LRF+ PS YH G + E+
Sbjct: 380 HGLTLGHLMGVLREFFTKLGITQLRFKPAYNPYTEPSMEVFSYHQGLKKWV----EV-GN 434
Query: 666 YFGEFHPNILDFFGLSNPICGF 687
G F P +L GL +
Sbjct: 435 -SGVFRPEMLLPMGLPENVSVI 455
>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase,
apoptosis; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB:
1kmc_A 1i4o_A 1gqf_A 3h1p_A* 1shj_A* 1k86_A 1k88_A
1shl_A*
Length = 305
Score = 28.1 bits (62), Expect = 8.4
Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 2/72 (2%)
Query: 8 LKDHLDTDVSLEKICDTLTSIGLEVEKVDNREALSPFTIVKVLSVERNPDLDCAILRIDT 67
+ TD E + S+G +V ++ ++K S E + + C + +
Sbjct: 86 MGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKMQDLLKKASEEDHTNAACFACILLS 145
Query: 68 GKHQEIQVVCGA 79
H E V+ G
Sbjct: 146 --HGEENVIYGK 155
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.320 0.138 0.400
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 7,001,716
Number of extensions: 342182
Number of successful extensions: 1126
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1053
Number of HSP's successfully gapped: 49
Length of query: 805
Length of database: 5,693,230
Length adjustment: 100
Effective length of query: 705
Effective length of database: 3,268,830
Effective search space: 2304525150
Effective search space used: 2304525150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.7 bits)