HHsearch alignment for GI: 254780317 and conserved domain: COG0017
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis].
Probab=94.46 E-value=0.022 Score=38.48 Aligned_cols=202 Identities=20% Similarity=0.296 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHHHHCCCEEECCCEEECHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHH--HHHH
Q ss_conf 89999999999998739876237234158898886189887733163312775056665563224467630555--5430
Q gi|254780317|r 117 PVTQVIDEVTCIFMDMGFALEEGSDIETDYYNFAALNFPDDHPARQMHDTFFVPGIAGGKHKLLRTHTSPVQIR--VMES 194 (366)
Q Consensus 117 PItqvi~eI~~IF~~lGF~v~eGPEIEtd~~NFdaLNiP~~HPARdmqDTFyl~~~~~~~~~lLRthTS~vQiR--~m~~ 194 (366)
T Consensus 136 irs~i~~a~~eff~~~gF~eV~tP~i~~~--------~~E-----Gg~elF~v~yf~--~~a~---LtqS~QLyke~~~~ 197 (435)
T COG0017 136 IRSSILRAIREFFYENGFTEVHTPIITAS--------ATE-----GGGELFKVDYFD--KEAY---LTQSPQLYKEALAA 197 (435)
T ss_pred HHHHHHHHHHHHHHHCCCEEECCCEEECC--------CCC-----CCCEEEEEEECC--CCEE---EECCHHHHHHHHHH
T ss_conf 99999999999997589589659468534--------789-----985057775068--5667---71478899999999
Q ss_pred CCCEEEEEECCCCCCCCC--CCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHC--------------CCCCCEEEE
Q ss_conf 363122541057647454--4213781002005786178668999889999999970--------------888662645
Q gi|254780317|r 195 QDLPIKVIVPGKTYRRDS--DSTHSPMFHQIEGLVVSDSATIANLRWVLESFCKSFF--------------EVSSLQMRF 258 (366)
Q Consensus 195 ~~pP~~~~~~GrvyR~d~--D~tH~~~FhQ~egl~v~~~i~~~~lk~~l~~~~~~~f--------------g~~~~~~r~ 258 (366)
T Consensus 198 a--l~rVf~igP~FRAE~s~T~RHL~EF~~ld~Emaf~~--~~d~m~l~E~~i~~i~~~v~e~~~~el~~l~~~~~~l~~ 273 (435)
T COG0017 198 A--LERVFTIGPTFRAEKSNTRRHLSEFWMLDPEMAFAD--LNDVMDLAEELIKYLFKKVLEECADELEFLGRDNSELKR 273 (435)
T ss_pred H--HCCEEEECCCEECCCCCCCCHHHHHHEECCEECCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCC
T ss_conf 8--576489567255477897003666733021113676--888999999999999999999718988876146111034
Q ss_pred EE-CCCC-----------------CCCCCCEE--------------E---EEEECCCCE---EEECCCC-----------
Q ss_conf 42-3889-----------------85266103--------------6---787505880---4224688-----------
Q gi|254780317|r 259 RP-SFFP-----------------FTEPSFEV--------------D---VRCSFSDGI---IKFDEGT----------- 289 (366)
Q Consensus 259 rp-~~fP-----------------ftePs~Ev--------------d---v~~~~~~~~---~~~~~~~----------- 289 (366)
T Consensus 274 ~~~~pf~ritY~eAieiL~~~~~e~~~~GdDl~~e~Er~l~e~~~~~~vfv~~yP~~~kpFYm~~~~d~p~~~~~~Dll~ 353 (435)
T COG0017 274 PESAPFPRITYKEAIEILEEKGFEKVEWGDDLGTEHERYLGEEYFKPPVFVTNYPKEIKPFYMRPDPDNPGTVASFDLLA 353 (435)
T ss_pred CCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEC
T ss_conf 44689637779999999986477656777756889999999875799499981764446650333799887699876524
Q ss_pred CE-EEEECCCCC--CHHHH----HHCCCCCCCEEEE------------EEECCHHHHHHHHCCCCCHHHH
Q ss_conf 34-898457563--88899----8569880003799------------6313446997997389705876
Q gi|254780317|r 290 EW-MEILGCGMV--DPRVL----RGVGIDPDIYQGF------------AWGMGLDRIAMLKYGMPDVREF 340 (366)
Q Consensus 290 ~W-iEi~g~Gm~--~p~vl----~~~g~d~~~~~g~------------AfG~G~eRlaml~~gi~diR~~ 340 (366)
T Consensus 354 p~~gEIigGsqRe~~~d~L~~ri~~~gl~~e~~~wYld~~kyG~~PHaGfGlG~ERlv~~i~gl~nIRea 423 (435)
T COG0017 354 PGGGEIIGGSQREHDYDLLVERIKEKGLDPESYEWYLDLRKYGMPPHAGFGLGLERLVMYILGLDNIREA 423 (435)
T ss_pred CCCEEEECCEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEC
T ss_conf 7870560362304309999999998099968818999998738999860033799999999488832012