HHsearch alignment for GI: 254780317 and conserved domain: COG0423

>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis].
Probab=95.94  E-value=0.02  Score=38.80  Aligned_cols=112  Identities=22%  Similarity=0.284  Sum_probs=66.5

Q ss_pred             CCCCCCCCCCCHHH----HHHH--HCCCEEEEEECCCCCCCC-C---CCCCCCCCCCCCEE-EECCCC------------
Q ss_conf             56322446763055----5543--036312254105764745-4---42137810020057-861786------------
Q gi|254780317|r  176 KHKLLRTHTSPVQI----RVME--SQDLPIKVIVPGKTYRRD-S---DSTHSPMFHQIEGL-VVSDSA------------  232 (366)
Q Consensus       176 ~~~lLRthTS~vQi----R~m~--~~~pP~~~~~~GrvyR~d-~---D~tH~~~FhQ~egl-~v~~~i------------  232 (366)
T Consensus       159 ~~~YLRPETAQGiFvnFk~l~~~~r~klPFgiaQIGKsfRNEISPr~gl~R~REF~QaEiE~Fv~P~~k~~p~f~~v~~~  238 (558)
T COG0423         159 SLGYLRPETAQGIFVNFKNLLEFARNKLPFGIAQIGKSFRNEISPRNGLFRTREFEQAEIEFFVDPEEKEHPKFNEVKDE  238 (558)
T ss_pred             CCEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECHHHCCCCCCCCCEEEHHHHHHHEEEEEECCCCCCCCCHHHHHHH
T ss_conf             63245651002121536999997536898488862310146527665366512343120135887775568633333210


Q ss_pred             ---------------------------CHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCC----CEEEEEEECCCC
Q ss_conf             ---------------------------6899988999999997088866264542388985266----103678750588
Q gi|254780317|r  233 ---------------------------TIANLRWVLESFCKSFFEVSSLQMRFRPSFFPFTEPS----FEVDVRCSFSDG  281 (366)
Q Consensus       233 ---------------------------~~~~lk~~l~~~~~~~fg~~~~~~r~rp~~fPftePs----~Evdv~~~~~~~  281 (366)
T Consensus       239 ~l~l~~~~~q~~~~~~EAv~~g~~~n~~~~y~~~~~~~fl~~l-GI~~e~lRfrqh--~~~E~AHYa~~twD~E~~----  311 (558)
T COG0423         239 KLPLLPREAQEEGTEEEAVEEGIVENETLAYFIARTKFFLEDL-GIDPEKLRFRQH--LPEELAHYSKDTWDAEYK----  311 (558)
T ss_pred             HCCCCCHHHHHHHHHHHHHHCCEECCHHHHHHHHHHHHHHHHH-CCCHHHHHHHHC--CHHHHHHHHHCCEEEEEE----
T ss_conf             0246647776410034554415450443899999999999980-999898066523--908776654402327996----


Q ss_pred             EEEECCCCCEEEEECCC
Q ss_conf             04224688348984575
Q gi|254780317|r  282 IIKFDEGTEWMEILGCG  298 (366)
Q Consensus       282 ~~~~~~~~~WiEi~g~G  298 (366)
T Consensus       312 ----~~~~gWiE~~GiA  324 (558)
T COG0423         312 ----FPFGGWIELVGIA  324 (558)
T ss_pred             ----CCCCCEEEEEEEE
T ss_conf             ----3788669999861