HHsearch alignment for GI: 254780317 and conserved domain: COG0441
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=94.08 E-value=0.43 Score=28.96 Aligned_cols=140 Identities=18% Similarity=0.251 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHHCCCEEECCCEEECHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHC--
Q ss_conf 999999999999873987623723415889888618988773316331277505666556322446763055554303--
Q gi|254780317|r 118 VTQVIDEVTCIFMDMGFALEEGSDIETDYYNFAALNFPDDHPARQMHDTFFVPGIAGGKHKLLRTHTSPVQIRVMESQ-- 195 (366)
Q Consensus 118 Itqvi~eI~~IF~~lGF~v~eGPEIEtd~~NFdaLNiP~~HPARdmqDTFyl~~~~~~~~~lLRthTS~vQiR~m~~~-- 195 (366)
T Consensus 223 r~~le~y~~~~~~~~Gy~~V~TP~~~~~-----~l~~~SGH~~~y~e~mf~~~~~--~~~~~lKpmNCpgh~~ifk~~~~ 295 (589)
T COG0441 223 RNLLEDYVRTKLRSYGYQEVKTPVLADL-----ELWELSGHWDNYKEDMFLTESD--DREYALKPMNCPGHILIFKSGLR 295 (589)
T ss_pred HHHHHHHHHHHHHHCCCEEECCCEEEEC-----CCCHHCCCHHHCCCCCEEECCC--CHHHEEEECCCHHHHHHHHCCCC
T ss_conf 9999999998987558527128736300-----0010112045513660662137--72330641078768999853786
Q ss_pred ---CCEEEEEECCCCCCCCC-CCCCC----CCCCCCCEEEECC-CCCHHHHHHHHHHHHH--HHCCCCC--CEEEEEECC
Q ss_conf ---63122541057647454-42137----8100200578617-8668999889999999--9708886--626454238
Q gi|254780317|r 196 ---DLPIKVIVPGKTYRRDS-DSTHS----PMFHQIEGLVVSD-SATIANLRWVLESFCK--SFFEVSS--LQMRFRPSF 262 (366)
Q Consensus 196 ---~pP~~~~~~GrvyR~d~-D~tH~----~~FhQ~egl~v~~-~i~~~~lk~~l~~~~~--~~fg~~~--~~~r~rp~~ 262 (366)
T Consensus 296 SYR~LP~r~~E~g~v~R~E~SGal~GL~RvR~ftqdD~Hifc~~dQi~~E~~~~~~~i~~v~~~fg~~~y~~~ls~r~k~ 375 (589)
T COG0441 296 SYRELPLRLAEFGYVYRYEKSGALHGLMRVRGFTQDDAHIFCTPDQIKDEFKGILELILEVYKDFGFTDYEVKLSTRPKF 375 (589)
T ss_pred CEECCCHHHHHCCEEECCCCCCHHHCCCCCCCEEECCCCEECCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf 11004404331442211567642222400113224562014046788999999999999999846975379999647764
Q ss_pred CC
Q ss_conf 89
Q gi|254780317|r 263 FP 264 (366)
Q Consensus 263 fP 264 (366)
T Consensus 376 ig 377 (589)
T COG0441 376 IG 377 (589)
T ss_pred CC
T ss_conf 68