HHsearch alignment for GI: 254780317 and conserved domain: COG2024
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis].
Probab=99.95 E-value=1e-27 Score=223.68 Aligned_cols=231 Identities=26% Similarity=0.462 Sum_probs=183.4
Q ss_pred HHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEECCCEEECHHHHHHHHCCCCCCCCCCCCCEEEEECC----
Q ss_conf 3100000112321226742389999999999998739876237234158898886189887733163312775056----
Q gi|254780317|r 97 QSVDVSLPVFSSPCHRGRIHPVTQVIDEVTCIFMDMGFALEEGSDIETDYYNFAALNFPDDHPARQMHDTFFVPGI---- 172 (366)
Q Consensus 97 E~iDVTLP~~~~~~~~G~~HPItqvi~eI~~IF~~lGF~v~eGPEIEtd~~NFdaLNiP~~HPARdmqDTFyl~~~---- 172 (366)
T Consensus 30 p~~~~~YP--Rl~f~~Gk~Hpl~~TIq~lReAYLr~GF~EmvNPlivde~evykQF--GpEA~AV-LDRCFYLagLPrPd 104 (536)
T COG2024 30 PHLDERYP--RLKFETGKPHPLYETIQRLREAYLRMGFSEMVNPLIVDEEEVYKQF--GPEALAV-LDRCFYLAGLPRPD 104 (536)
T ss_pred CCCCCCCC--CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH--CHHHHHH-HHHHHHHCCCCCCC
T ss_conf 98311377--4333459967189999999999997568976385115789999874--8378899-98888862799988
Q ss_pred -------------------------------------------------------------------------CCCCCCC
Q ss_conf -------------------------------------------------------------------------6655632
Q gi|254780317|r 173 -------------------------------------------------------------------------AGGKHKL 179 (366)
Q Consensus 173 -------------------------------------------------------------------------~~~~~~l 179 (366)
T Consensus 105 VGlg~eki~~i~~i~~d~~de~~e~lrevlh~YKKG~idGDdLv~eIa~aL~v~d~~~~~vle~vFPEfk~Lkp~s~tlT 184 (536)
T COG2024 105 VGLGAEKIEQIEEIGIDEPDEKVERLREVLHAYKKGEIDGDDLVHEIAEALEVDDGTGLRVLEEVFPEFKDLKPESSTLT 184 (536)
T ss_pred CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHCCCCCCCEE
T ss_conf 67567889999985278853667999999998753788741437999987346750588999986748763577777505
Q ss_pred CCCC-CCCHHH---HHHHHCCCEEEEEECCCCCCCCC--CCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf 2446-763055---55430363122541057647454--42137810020057861786689998899999999708886
Q gi|254780317|r 180 LRTH-TSPVQI---RVMESQDLPIKVIVPGKTYRRDS--DSTHSPMFHQIEGLVVSDSATIANLRWVLESFCKSFFEVSS 253 (366)
Q Consensus 180 LRth-TS~vQi---R~m~~~~pP~~~~~~GrvyR~d~--D~tH~~~FhQ~egl~v~~~i~~~~lk~~l~~~~~~~fg~~~ 253 (366)
T Consensus 185 LRSHMTsGWFItLs~i~~r~~~PlklFSIDRCFRREQ~ED~shLmtYhSASCVvvde~vtvD~GKaVAEglL~qf-GFe- 262 (536)
T COG2024 185 LRSHMTSGWFITLSEILKREDPPLKLFSIDRCFRREQREDASHLMTYHSASCVVVDEDVTVDDGKAVAEGLLRQF-GFE- 262 (536)
T ss_pred HHHHCCCCEEEEHHHHHHCCCCCCEEEEHHHHHHHHHHCCHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHH-CCC-
T ss_conf 666334310135798872348984164256776655310156664320340799758644354389999999971-940-
Q ss_pred CEEEEEEC------CCCCCCCCCEEEEEEECCCCEEEECCCCCEEEEECCCCCCHHHHHHCCCCCCCEEEEEEECCHHHH
Q ss_conf 62645423------889852661036787505880422468834898457563888998569880003799631344699
Q gi|254780317|r 254 LQMRFRPS------FFPFTEPSFEVDVRCSFSDGIIKFDEGTEWMEILGCGMVDPRVLRGVGIDPDIYQGFAWGMGLDRI 327 (366)
Q Consensus 254 ~~~r~rp~------~fPftePs~Evdv~~~~~~~~~~~~~~~~WiEi~g~Gm~~p~vl~~~g~d~~~~~g~AfG~G~eRl 327 (366)
T Consensus 263 -~F~FrpDEK~SKYYvP~TQ--TEVyAyHPkL~gs~~-kysdgWiEiATFGlYSP~ALaeY~Id~p---VMNLGlGVERl 335 (536)
T COG2024 263 -KFRFRPDEKKSKYYVPGTQ--TEVYAYHPKLVGSIE-KYSDGWIEIATFGLYSPIALAEYGIDYP---VMNLGLGVERL 335 (536)
T ss_pred -CEEECCCCCCCCCCCCCCC--CEEEEECCCCCCCCC-CCCCCCEEEEEECCCCHHHHHHCCCCCC---EEECCHHHHHH
T ss_conf -0354662003553479963--047774540036521-2588708999603567277987299970---12032208999
Q ss_pred HHHHCCCCCHHHHH
Q ss_conf 79973897058766
Q gi|254780317|r 328 AMLKYGMPDVREFF 341 (366)
Q Consensus 328 aml~~gi~diR~~~ 341 (366)
T Consensus 336 aMIl~g~~DVR~mv 349 (536)
T COG2024 336 AMILHGADDVRSMV 349 (536)
T ss_pred HHHHHCCHHHHHHH
T ss_conf 99981744776651