HHsearch alignment for GI: 254780317 and conserved domain: PRK05431
>PRK05431 seryl-tRNA synthetase; Provisional.
Probab=97.38 E-value=0.021 Score=38.61 Aligned_cols=186 Identities=16% Similarity=0.248 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHCCCEEECCCEEECHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHH------HH
Q ss_conf 999999999873987623723415889888618988773316331277505666556322446763055554------30
Q gi|254780317|r 121 VIDEVTCIFMDMGFALEEGSDIETDYYNFAALNFPDDHPARQMHDTFFVPGIAGGKHKLLRTHTSPVQIRVM------ES 194 (366)
Q Consensus 121 vi~eI~~IF~~lGF~v~eGPEIEtd~~NFdaLNiP~~HPARdmqDTFyl~~~~~~~~~lLRthTS~vQiR~m------~~ 194 (366)
T Consensus 176 Li~f~ld~~~~~Gy~~v~~P~lv~~~~~~gtGqlPkf-----e~~~Y~i~~----~dl~L-i~TAEvpL~~~~~~eil~~ 245 (422)
T PRK05431 176 LIQFMLDLHTEEGYTEVIPPYLVNEESMYGTGQLPKF-----EEDLFKIED----DDLYL-IPTAEVPLTNLHRDEILDE 245 (422)
T ss_pred HHHHHHHHHHHCCCEEEECHHHHHHHHHHHHCCCCCC-----HHHHHHHCC----CCEEE-ECCCCCCHHHHHHCCCCCH
T ss_conf 9999999999879979967376367887445379744-----877541058----87176-0565321233440113365
Q ss_pred CCCEEEEEECCCCCCCCC-----CC---CCCCCCCCCCEEEECCC-CC---HHHHHHHHHHHHHHHCCCCCCEEEEEECC
Q ss_conf 363122541057647454-----42---13781002005786178-66---89998899999999708886626454238
Q gi|254780317|r 195 QDLPIKVIVPGKTYRRDS-----DS---THSPMFHQIEGLVVSDS-AT---IANLRWVLESFCKSFFEVSSLQMRFRPSF 262 (366)
Q Consensus 195 ~~pP~~~~~~GrvyR~d~-----D~---tH~~~FhQ~egl~v~~~-i~---~~~lk~~l~~~~~~~fg~~~~~~r~rp~~ 262 (366)
T Consensus 246 ~~LPik~~~~S~CFR~EAGs~GkdtrGl~RvHQF~KVE~f~~~~pe~S~~~~e~~~~~~e~i~~~L------~lpyrvv~ 319 (422)
T PRK05431 246 EELPIKYTAYSPCFRSEAGSAGRDTRGLIRQHQFDKVELVKFTKPEDSYAELEELTGNAEEILQKL------ELPYRVVL 319 (422)
T ss_pred HHCCHHHEEECCHHHHCCCCCCCCCCCCEEEEEECEEEEEEECCHHHHHHHHHHHHHHHHHHHHHC------CCCCCCCC
T ss_conf 439844527883653031336755676124430000343353586779999999999999999875------98502356
Q ss_pred CCCCCC----CCEEEEEEECCCCEEEECCCCCEEEEECCCCCCHHHHHHCCC---CCCCEEEEEE-----ECCHHHHHH
Q ss_conf 898526----610367875058804224688348984575638889985698---8000379963-----134469979
Q gi|254780317|r 263 FPFTEP----SFEVDVRCSFSDGIIKFDEGTEWMEILGCGMVDPRVLRGVGI---DPDIYQGFAW-----GMGLDRIAM 329 (366)
Q Consensus 263 fPfteP----s~Evdv~~~~~~~~~~~~~~~~WiEi~g~Gm~~p~vl~~~g~---d~~~~~g~Af-----G~G~eRlam 329 (366)
T Consensus 320 ~~sgdlg~~a~~~yDiE~W~P~-------~~~y~EvsS~Snc~d~QsrRl~iry~~~~~~~~~~htlNgt~~A~~R~l~ 391 (422)
T PRK05431 320 LCTGDMGFSAAKTYDLEVWLPG-------QNTYREISSCSNCTDFQARRANIRYRDEDGKPELVHTLNGSGLAVGRTLV 391 (422)
T ss_pred CCCCCCCHHHHHHEEEEEEECC-------CCCEEEEEEECCCCHHHHHHCCCEEECCCCCEEEEEECCCCHHHHHHHHH
T ss_conf 7876557665654545787156-------68545240001501488753026551799986640431151218878999