HHsearch alignment for GI: 254780317 and conserved domain: PRK05431

>PRK05431 seryl-tRNA synthetase; Provisional.
Probab=97.38  E-value=0.021  Score=38.61  Aligned_cols=186  Identities=16%  Similarity=0.248  Sum_probs=111.6

Q ss_pred             HHHHHHHHHHHCCCEEECCCEEECHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHH------HH
Q ss_conf             999999999873987623723415889888618988773316331277505666556322446763055554------30
Q gi|254780317|r  121 VIDEVTCIFMDMGFALEEGSDIETDYYNFAALNFPDDHPARQMHDTFFVPGIAGGKHKLLRTHTSPVQIRVM------ES  194 (366)
Q Consensus       121 vi~eI~~IF~~lGF~v~eGPEIEtd~~NFdaLNiP~~HPARdmqDTFyl~~~~~~~~~lLRthTS~vQiR~m------~~  194 (366)
T Consensus       176 Li~f~ld~~~~~Gy~~v~~P~lv~~~~~~gtGqlPkf-----e~~~Y~i~~----~dl~L-i~TAEvpL~~~~~~eil~~  245 (422)
T PRK05431        176 LIQFMLDLHTEEGYTEVIPPYLVNEESMYGTGQLPKF-----EEDLFKIED----DDLYL-IPTAEVPLTNLHRDEILDE  245 (422)
T ss_pred             HHHHHHHHHHHCCCEEEECHHHHHHHHHHHHCCCCCC-----HHHHHHHCC----CCEEE-ECCCCCCHHHHHHCCCCCH
T ss_conf             9999999999879979967376367887445379744-----877541058----87176-0565321233440113365


Q ss_pred             CCCEEEEEECCCCCCCCC-----CC---CCCCCCCCCCEEEECCC-CC---HHHHHHHHHHHHHHHCCCCCCEEEEEECC
Q ss_conf             363122541057647454-----42---13781002005786178-66---89998899999999708886626454238
Q gi|254780317|r  195 QDLPIKVIVPGKTYRRDS-----DS---THSPMFHQIEGLVVSDS-AT---IANLRWVLESFCKSFFEVSSLQMRFRPSF  262 (366)
Q Consensus       195 ~~pP~~~~~~GrvyR~d~-----D~---tH~~~FhQ~egl~v~~~-i~---~~~lk~~l~~~~~~~fg~~~~~~r~rp~~  262 (366)
T Consensus       246 ~~LPik~~~~S~CFR~EAGs~GkdtrGl~RvHQF~KVE~f~~~~pe~S~~~~e~~~~~~e~i~~~L------~lpyrvv~  319 (422)
T PRK05431        246 EELPIKYTAYSPCFRSEAGSAGRDTRGLIRQHQFDKVELVKFTKPEDSYAELEELTGNAEEILQKL------ELPYRVVL  319 (422)
T ss_pred             HHCCHHHEEECCHHHHCCCCCCCCCCCCEEEEEECEEEEEEECCHHHHHHHHHHHHHHHHHHHHHC------CCCCCCCC
T ss_conf             439844527883653031336755676124430000343353586779999999999999999875------98502356


Q ss_pred             CCCCCC----CCEEEEEEECCCCEEEECCCCCEEEEECCCCCCHHHHHHCCC---CCCCEEEEEE-----ECCHHHHHH
Q ss_conf             898526----610367875058804224688348984575638889985698---8000379963-----134469979
Q gi|254780317|r  263 FPFTEP----SFEVDVRCSFSDGIIKFDEGTEWMEILGCGMVDPRVLRGVGI---DPDIYQGFAW-----GMGLDRIAM  329 (366)
Q Consensus       263 fPfteP----s~Evdv~~~~~~~~~~~~~~~~WiEi~g~Gm~~p~vl~~~g~---d~~~~~g~Af-----G~G~eRlam  329 (366)
T Consensus       320 ~~sgdlg~~a~~~yDiE~W~P~-------~~~y~EvsS~Snc~d~QsrRl~iry~~~~~~~~~~htlNgt~~A~~R~l~  391 (422)
T PRK05431        320 LCTGDMGFSAAKTYDLEVWLPG-------QNTYREISSCSNCTDFQARRANIRYRDEDGKPELVHTLNGSGLAVGRTLV  391 (422)
T ss_pred             CCCCCCCHHHHHHEEEEEEECC-------CCCEEEEEEECCCCHHHHHHCCCEEECCCCCEEEEEECCCCHHHHHHHHH
T ss_conf             7876557665654545787156-------68545240001501488753026551799986640431151218878999