HHsearch alignment for GI: 254780317 and conserved domain: PRK06253
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed.
Probab=100.00 E-value=0 Score=357.97 Aligned_cols=246 Identities=24% Similarity=0.408 Sum_probs=186.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEECCCEEECH---
Q ss_conf 99999999999999999856766676543100000112321226742389999999999998739876237234158---
Q gi|254780317|r 69 QLKVDISGKISARKDFIRNQLIFEQISSQSVDVSLPVFSSPCHRGRIHPVTQVIDEVTCIFMDMGFALEEGSDIETD--- 145 (366)
Q Consensus 69 elK~~Ie~~i~~kk~~L~~~~~~~kl~~E~iDVTLP~~~~~~~~G~~HPItqvi~eI~~IF~~lGF~v~eGPEIEtd--- 145 (366)
T Consensus 10 ~a~~DFe~AW~~g~~~i~~~~---------~~~~YP--r~~~~~gk~HPv~~tI~~lReayL~mGF~E~~nPiiv~e~~v 78 (527)
T PRK06253 10 LAKKDFEKAWHEGKKLIKPPG---------LNERYP--RLKYEFGKAHPVFDTIQRLREAYLRMGFEEMMNPVIVDEKDI 78 (527)
T ss_pred HHHHHHHHHHHHCCCCCCCCC---------CCCCCC--CCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHCCEECCHHHH
T ss_conf 987538999872766226788---------444587--647666887837999999999999708487628522345888
Q ss_pred HHHH---------------------------------HHHCCCCCCCCCCCCCEEEE--E----CC--------------
Q ss_conf 8988---------------------------------86189887733163312775--0----56--------------
Q gi|254780317|r 146 YYNF---------------------------------AALNFPDDHPARQMHDTFFV--P----GI-------------- 172 (366)
Q Consensus 146 ~~NF---------------------------------daLNiP~~HPARdmqDTFyl--~----~~-------------- 172 (366)
T Consensus 79 ~~qFg~eA~avlDr~FYLagLPrP~vGis~e~~~~i~~~~~~~~~~~~e~lr~~lh~ykkg~idGdDLv~ei~~~l~v~d 158 (527)
T PRK06253 79 YKQFGPEAMAVLDRCFYLAGLPRPNVGISDERIAQIEEILGDLSEEEKEKLREILHAYKKGEIDGDDLVLEISNALEVSD 158 (527)
T ss_pred HHHCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCC
T ss_conf 87408488988766644247898875622677999998617887677899999988752677664154788876406675
Q ss_pred ------------------CCCCCCCCCCCCCCH---HHHHHHH-CCCEEEEEECCCCCCCCC--CCCCCCCCCCCCEEEE
Q ss_conf ------------------665563224467630---5555430-363122541057647454--4213781002005786
Q gi|254780317|r 173 ------------------AGGKHKLLRTHTSPV---QIRVMES-QDLPIKVIVPGKTYRRDS--DSTHSPMFHQIEGLVV 228 (366)
Q Consensus 173 ------------------~~~~~~lLRthTS~v---QiR~m~~-~~pP~~~~~~GrvyR~d~--D~tH~~~FhQ~egl~v 228 (366)
T Consensus 159 ~~~~~~ld~VFPEfkeL~p~s~~~tLRSHmTsgwfitL~~l~~k~~~P~klFSIDRcFRrEq~eD~~hL~~yhsascvv~ 238 (527)
T PRK06253 159 AMVVKILDEVFPEFKELKPESSRLTLRSHMTSGWFITLSALWERKPLPFKLFSIDRCFRREQKEDASRLMTYHSASCVVA 238 (527)
T ss_pred CHHHHHHHHHCHHHHHCCCCCCCCEEHHCCCCHHHHHHHHHHHCCCCCEEEEEEEHEEECHHHCCHHHHHHHHEEEEEEE
T ss_conf 13435466545455522554445341001030278879999726799836874101022000024556345443226997
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEC------CCCCCCCCCEEEEEEECCCCEEEECCCCCEEEEECCCCCCH
Q ss_conf 178668999889999999970888662645423------88985266103678750588042246883489845756388
Q gi|254780317|r 229 SDSATIANLRWVLESFCKSFFEVSSLQMRFRPS------FFPFTEPSFEVDVRCSFSDGIIKFDEGTEWMEILGCGMVDP 302 (366)
Q Consensus 229 ~~~i~~~~lk~~l~~~~~~~fg~~~~~~r~rp~------~fPftePs~Evdv~~~~~~~~~~~~~~~~WiEi~g~Gm~~p 302 (366)
T Consensus 239 ~edVn~d~gkav~~~lL~~f-GF~--~frFrPdek~skYY~P~Tq--tEVy~yh---------p~~~gWvEvatfGIysP 304 (527)
T PRK06253 239 GEDVTVDDGKAVAEGLLSQF-GFT--NFRFRPDEKRSKYYTPDTQ--TEVYAYH---------PKLDGWVEVATFGIYSP 304 (527)
T ss_pred CCCCCHHHHHHHHHHHHHHH-CCC--EEEECCCCCCCCCCCCCCC--EEEEEEC---------CCCCCEEEEECCCCCCH
T ss_conf 59866777799999999970-975--3784344235665378863--2799963---------66786289731425675
Q ss_pred HHHHHCCCCCCCEEEEEEECCHHHHHHHHCCCCCHHHHHH
Q ss_conf 8998569880003799631344699799738970587663
Q gi|254780317|r 303 RVLRGVGIDPDIYQGFAWGMGLDRIAMLKYGMPDVREFFG 342 (366)
Q Consensus 303 ~vl~~~g~d~~~~~g~AfG~G~eRlaml~~gi~diR~~~~ 342 (366)
T Consensus 305 ~aL~~ygI~~PV---mnlGlGvERLAMI~~~~~DiR~l~y 341 (527)
T PRK06253 305 TALAEYGIDVPV---MNLGLGVERLAMILHNAEDVREMVY 341 (527)
T ss_pred HHHHHCCCCCCE---EECCCCHHHHHHHHCCCHHHHHHHC
T ss_conf 445431999742---2001118999999818277887633