HHsearch alignment for GI: 254780317 and conserved domain: PRK09350
>PRK09350 lysyl-tRNA synthetase; Provisional.
Probab=99.04 E-value=3.3e-09 Score=88.33 Aligned_cols=120 Identities=15% Similarity=0.231 Sum_probs=75.1
Q ss_pred CCCHHHHHHHHHHHHHHHCCCEEECCCEEECH---HHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHH-
Q ss_conf 42389999999999998739876237234158---89888618988773316331277505666556322446763055-
Q gi|254780317|r 114 RIHPVTQVIDEVTCIFMDMGFALEEGSDIETD---YYNFAALNFPDDHPARQMHDTFFVPGIAGGKHKLLRTHTSPVQI- 189 (366)
Q Consensus 114 ~~HPItqvi~eI~~IF~~lGF~v~eGPEIEtd---~~NFdaLNiP~~HPARdmqDTFyl~~~~~~~~~lLRthTS~vQi- 189 (366)
T Consensus 15 ~l~~Rs~i~~~iR~ff~~~gFlEVeTP~L~~~t~~~~~~~~f~~~~~~~~~~~~~~~yL-------------~~SPql~~ 81 (325)
T PRK09350 15 NLLKRAAIIAEIRRFFADRGVLEVETPAMSQATVTDIHLVPFETRFVGPGHSQGKTLWL-------------MTSPEYHM 81 (325)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEE-------------ECCHHHHH
T ss_conf 99999999999999999889689779842577887646762221025655456766455-------------07919999
Q ss_pred -HHHHHCCCEEEEEECCCCCCCCC-CCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCC
Q ss_conf -55430363122541057647454-42137810020057861786689998899999999708
Q gi|254780317|r 190 -RVMESQDLPIKVIVPGKTYRRDS-DSTHSPMFHQIEGLVVSDSATIANLRWVLESFCKSFFE 250 (366)
Q Consensus 190 -R~m~~~~pP~~~~~~GrvyR~d~-D~tH~~~FhQ~egl~v~~~i~~~~lk~~l~~~~~~~fg 250 (366)
T Consensus 82 k~l~~~-G-~~rvfqI~~~FR~E~~~~~H~pEFtmlE~~~~~--~d~~d~m~~~e~ll~~~~~ 140 (325)
T PRK09350 82 KRLLAA-G-SGPIFQLCRSFRNEEAGRYHNPEFTMLEWYRPH--YDMYRLMNEVDDLLQQVLD 140 (325)
T ss_pred HHHHHC-C-CCCEEEEEHHHCCCCCCCCCCCHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHC
T ss_conf 999866-7-885589611322899987657377888999815--4899999999999999974