HHsearch alignment for GI: 254780317 and conserved domain: PRK09350

>PRK09350 lysyl-tRNA synthetase; Provisional.
Probab=99.04  E-value=3.3e-09  Score=88.33  Aligned_cols=120  Identities=15%  Similarity=0.231  Sum_probs=75.1

Q ss_pred             CCCHHHHHHHHHHHHHHHCCCEEECCCEEECH---HHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHH-
Q ss_conf             42389999999999998739876237234158---89888618988773316331277505666556322446763055-
Q gi|254780317|r  114 RIHPVTQVIDEVTCIFMDMGFALEEGSDIETD---YYNFAALNFPDDHPARQMHDTFFVPGIAGGKHKLLRTHTSPVQI-  189 (366)
Q Consensus       114 ~~HPItqvi~eI~~IF~~lGF~v~eGPEIEtd---~~NFdaLNiP~~HPARdmqDTFyl~~~~~~~~~lLRthTS~vQi-  189 (366)
T Consensus        15 ~l~~Rs~i~~~iR~ff~~~gFlEVeTP~L~~~t~~~~~~~~f~~~~~~~~~~~~~~~yL-------------~~SPql~~   81 (325)
T PRK09350         15 NLLKRAAIIAEIRRFFADRGVLEVETPAMSQATVTDIHLVPFETRFVGPGHSQGKTLWL-------------MTSPEYHM   81 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEE-------------ECCHHHHH
T ss_conf             99999999999999999889689779842577887646762221025655456766455-------------07919999


Q ss_pred             -HHHHHCCCEEEEEECCCCCCCCC-CCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCC
Q ss_conf             -55430363122541057647454-42137810020057861786689998899999999708
Q gi|254780317|r  190 -RVMESQDLPIKVIVPGKTYRRDS-DSTHSPMFHQIEGLVVSDSATIANLRWVLESFCKSFFE  250 (366)
Q Consensus       190 -R~m~~~~pP~~~~~~GrvyR~d~-D~tH~~~FhQ~egl~v~~~i~~~~lk~~l~~~~~~~fg  250 (366)
T Consensus        82 k~l~~~-G-~~rvfqI~~~FR~E~~~~~H~pEFtmlE~~~~~--~d~~d~m~~~e~ll~~~~~  140 (325)
T PRK09350         82 KRLLAA-G-SGPIFQLCRSFRNEEAGRYHNPEFTMLEWYRPH--YDMYRLMNEVDDLLQQVLD  140 (325)
T ss_pred             HHHHHC-C-CCCEEEEEHHHCCCCCCCCCCCHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHC
T ss_conf             999866-7-885589611322899987657377888999815--4899999999999999974