HHsearch alignment for GI: 254780317 and conserved domain: TIGR02367
>TIGR02367 PylS pyrrolysyl-tRNA synthetase; InterPro: IPR012739 PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, e.g. trimethylamine methyltransferase. .
Probab=97.81 E-value=5.8e-05 Score=57.26 Aligned_cols=193 Identities=23% Similarity=0.359 Sum_probs=133.7
Q ss_pred CHHHHHHHHHHHHHHHCCCEEECCCEEECHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHH-
Q ss_conf 3899999999999987398762372341588988861898877331633127750566655632244676305555430-
Q gi|254780317|r 116 HPVTQVIDEVTCIFMDMGFALEEGSDIETDYYNFAALNFPDDHPARQMHDTFFVPGIAGGKHKLLRTHTSPVQIRVMES- 194 (366)
Q Consensus 116 HPItqvi~eI~~IF~~lGF~v~eGPEIEtd~~NFdaLNiP~~HPARdmqDTFyl~~~~~~~~~lLRthTS~vQiR~m~~- 194 (366)
T Consensus 240 ~ylGkler~it~ffvdrGfleiksPiliP~ey-~ermGi~ndt--elskqifrv-----dkn~ClrPmlaP~lynylrkl 311 (453)
T TIGR02367 240 DYLGKLEREITKFFVDRGFLEIKSPILIPLEY-VERMGIDNDT--ELSKQIFRV-----DKNLCLRPMLAPTLYNYLRKL 311 (453)
T ss_pred HHHHHHHHHHHHHHHHCCEEEECCCCCCCHHH-HHHCCCCCCH--HHHHHHHHH-----HHHHHCCCCHHHHHHHHHHHH
T ss_conf 67546766676665312402323631010568-8650776402--566666644-----100101210005689999998
Q ss_pred --C-CCEEEEEECCCCCCCCCC-CCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCC
Q ss_conf --3-631225410576474544-213781002005786178668999889999999970888662645423889852661
Q gi|254780317|r 195 --Q-DLPIKVIVPGKTYRRDSD-STHSPMFHQIEGLVVSDSATIANLRWVLESFCKSFFEVSSLQMRFRPSFFPFTEPSF 270 (366)
Q Consensus 195 --~-~pP~~~~~~GrvyR~d~D-~tH~~~FhQ~egl~v~~~i~~~~lk~~l~~~~~~~fg~~~~~~r~rp~~fPftePs~ 270 (366)
T Consensus 312 dr~lP~Pik~fe~GPCyrkesdGkehleeftm~nfCqmGsGCtrenle~~i~~fl~~l-~i-d--f~-------ivGds- 379 (453)
T TIGR02367 312 DRILPDPIKVFEVGPCYRKESDGKEHLEEFTMLNFCQMGSGCTRENLEALIKEFLDYL-EI-D--FK-------IVGDS- 379 (453)
T ss_pred HHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH-CC-C--EE-------EECCE-
T ss_conf 7537896479860675243565335666666555431478732677999999988761-54-2--47-------85242-
Q ss_pred EEEEEEECCCCEEEECCCCCEEEEECCCCCCHHHH-HHCCCCCCCEEEEEEECCHHHHHHHHCCCCCHHH
Q ss_conf 03678750588042246883489845756388899-8569880003799631344699799738970587
Q gi|254780317|r 271 EVDVRCSFSDGIIKFDEGTEWMEILGCGMVDPRVL-RGVGIDPDIYQGFAWGMGLDRIAMLKYGMPDVRE 339 (366)
Q Consensus 271 Evdv~~~~~~~~~~~~~~~~WiEi~g~Gm~~p~vl-~~~g~d~~~~~g~AfG~G~eRlaml~~gi~diR~ 339 (366)
T Consensus 380 -----CmvyGdtld~mh--Gdlels-savvGP~~ldreWGidkP-Wi--GaGfGlerllkv~h~fknikr 438 (453)
T TIGR02367 380 -----CMVYGDTLDVMH--GDLELS-SAVVGPVSLDREWGIDKP-WI--GAGFGLERLLKVKHDFKNIKR 438 (453)
T ss_pred -----EEEECCHHEEEE--CCHHHC-CEEECCCCCCCCCCCCCC-CC--CCCHHHHHHHHHHHHHHHHHH
T ss_conf -----465335010001--320000-002236322301378887-21--253236788877632345545