HHsearch alignment for GI: 254780317 and conserved domain: cd00670
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=98.07 E-value=0.0006 Score=49.87 Aligned_cols=194 Identities=11% Similarity=0.073 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHHCCCEEECCCEEECHHHHHHHHCCCCCCCCCCCCCEEEEECCC---CCCCCCCCCCCCCHHHHHH---
Q ss_conf 9999999999987398762372341588988861898877331633127750566---6556322446763055554---
Q gi|254780317|r 119 TQVIDEVTCIFMDMGFALEEGSDIETDYYNFAALNFPDDHPARQMHDTFFVPGIA---GGKHKLLRTHTSPVQIRVM--- 192 (366)
Q Consensus 119 tqvi~eI~~IF~~lGF~v~eGPEIEtd~~NFdaLNiP~~HPARdmqDTFyl~~~~---~~~~~lLRthTS~vQiR~m--- 192 (366)
T Consensus 6 ~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~s-----g~~~~f~~~~y~v~~~~~~~~~~~~~L~P-TsE~~~~~~~~~ 79 (235)
T cd00670 6 RALERFLDDRMAEYGYQEILFPFLAPTVLFFKG-----GHLDGYRKEMYTFEDKGRELRDTDLVLRP-AACEPIYQIFSG 79 (235)
T ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHC-----CCCCCCCCCEEEEECCCCCCCCCCEEEEE-CCCHHHHHHHHC
T ss_conf 999999999999869989989855789999223-----86754520528982377666787389930-786999999948
Q ss_pred ---HHCCCEEEEEECCCCCCCCC-CC---CCCCCCCCCCEEEECCCC----CHHHHHHHHHHHHHHHCCCCCCEEEEEEC
Q ss_conf ---30363122541057647454-42---137810020057861786----68999889999999970888662645423
Q gi|254780317|r 193 ---ESQDLPIKVIVPGKTYRRDS-DS---THSPMFHQIEGLVVSDSA----TIANLRWVLESFCKSFFEVSSLQMRFRPS 261 (366)
Q Consensus 193 ---~~~~pP~~~~~~GrvyR~d~-D~---tH~~~FhQ~egl~v~~~i----~~~~lk~~l~~~~~~~fg~~~~~~r~rp~ 261 (366)
T Consensus 80 ~i~s~~dLPlr~~~~s~~fR~E~~~~~Gl~Rv~eF~k~E~~~~~~~e~~~~~~~~~~~~~~~i~~~L-~l-~y~v~~~~~ 157 (235)
T cd00670 80 EILSYRALPLRLDQIGPCFRHEPSGRRGLMRVREFRQVEYVVFGEPEEAEEERREWLELAEEIAREL-GL-PVRVVVADD 157 (235)
T ss_pred CCCCHHHCCEEEEEECCEECCCCCCCCCCEEEEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHC-CC-CEEEEECCC
T ss_conf 3287687995454456533367899999836789998507999688999999999999999999986-99-779997586
Q ss_pred ----------CCCCCCCCCEEEEEEECCCCEEEECCCCCEEEEECCCCCCHHHHHHCCCCC------CCEEEEEEECCHH
Q ss_conf ----------889852661036787505880422468834898457563888998569880------0037996313446
Q gi|254780317|r 262 ----------FFPFTEPSFEVDVRCSFSDGIIKFDEGTEWMEILGCGMVDPRVLRGVGIDP------DIYQGFAWGMGLD 325 (366)
Q Consensus 262 ----------~fPftePs~Evdv~~~~~~~~~~~~~~~~WiEi~g~Gm~~p~vl~~~g~d~------~~~~g~AfG~G~e 325 (366)
T Consensus 158 ~d~g~~~~~~~~~~a~~~~--d~E~~~p~-------~~~~~e~~s~S~~~~~q~r~~~~~~~~~~~~~~ht~~~s~~a~~ 228 (235)
T cd00670 158 PFFGRGGKRGLDAGRETVV--EFELLLPL-------PGRAKETAVGSANVHLDHFGASFKIDEDGGGRAHTGCGGAGGEE 228 (235)
T ss_pred CCCCCCCCCCCCCCCCCCE--EEEEEECC-------CCCEEEEEEEEECCCHHHCCCCCEEECCCCCEEEEECCCCCHHH
T ss_conf 1337664100025655564--69999778-------99467899930257844430253014699968999726328899
Q ss_pred HHHH
Q ss_conf 9979
Q gi|254780317|r 326 RIAM 329 (366)
Q Consensus 326 Rlam 329 (366)
T Consensus 229 R~l~ 232 (235)
T cd00670 229 RLVL 232 (235)
T ss_pred HHHH
T ss_conf 9999