HHsearch alignment for GI: 254780317 and conserved domain: cd00670

>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=98.07  E-value=0.0006  Score=49.87  Aligned_cols=194  Identities=11%  Similarity=0.073  Sum_probs=113.7

Q ss_pred             HHHHHHHHHHHHHCCCEEECCCEEECHHHHHHHHCCCCCCCCCCCCCEEEEECCC---CCCCCCCCCCCCCHHHHHH---
Q ss_conf             9999999999987398762372341588988861898877331633127750566---6556322446763055554---
Q gi|254780317|r  119 TQVIDEVTCIFMDMGFALEEGSDIETDYYNFAALNFPDDHPARQMHDTFFVPGIA---GGKHKLLRTHTSPVQIRVM---  192 (366)
Q Consensus       119 tqvi~eI~~IF~~lGF~v~eGPEIEtd~~NFdaLNiP~~HPARdmqDTFyl~~~~---~~~~~lLRthTS~vQiR~m---  192 (366)
T Consensus         6 ~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~s-----g~~~~f~~~~y~v~~~~~~~~~~~~~L~P-TsE~~~~~~~~~   79 (235)
T cd00670           6 RALERFLDDRMAEYGYQEILFPFLAPTVLFFKG-----GHLDGYRKEMYTFEDKGRELRDTDLVLRP-AACEPIYQIFSG   79 (235)
T ss_pred             HHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHC-----CCCCCCCCCEEEEECCCCCCCCCCEEEEE-CCCHHHHHHHHC
T ss_conf             999999999999869989989855789999223-----86754520528982377666787389930-786999999948


Q ss_pred             ---HHCCCEEEEEECCCCCCCCC-CC---CCCCCCCCCCEEEECCCC----CHHHHHHHHHHHHHHHCCCCCCEEEEEEC
Q ss_conf             ---30363122541057647454-42---137810020057861786----68999889999999970888662645423
Q gi|254780317|r  193 ---ESQDLPIKVIVPGKTYRRDS-DS---THSPMFHQIEGLVVSDSA----TIANLRWVLESFCKSFFEVSSLQMRFRPS  261 (366)
Q Consensus       193 ---~~~~pP~~~~~~GrvyR~d~-D~---tH~~~FhQ~egl~v~~~i----~~~~lk~~l~~~~~~~fg~~~~~~r~rp~  261 (366)
T Consensus        80 ~i~s~~dLPlr~~~~s~~fR~E~~~~~Gl~Rv~eF~k~E~~~~~~~e~~~~~~~~~~~~~~~i~~~L-~l-~y~v~~~~~  157 (235)
T cd00670          80 EILSYRALPLRLDQIGPCFRHEPSGRRGLMRVREFRQVEYVVFGEPEEAEEERREWLELAEEIAREL-GL-PVRVVVADD  157 (235)
T ss_pred             CCCCHHHCCEEEEEECCEECCCCCCCCCCEEEEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHC-CC-CEEEEECCC
T ss_conf             3287687995454456533367899999836789998507999688999999999999999999986-99-779997586


Q ss_pred             ----------CCCCCCCCCEEEEEEECCCCEEEECCCCCEEEEECCCCCCHHHHHHCCCCC------CCEEEEEEECCHH
Q ss_conf             ----------889852661036787505880422468834898457563888998569880------0037996313446
Q gi|254780317|r  262 ----------FFPFTEPSFEVDVRCSFSDGIIKFDEGTEWMEILGCGMVDPRVLRGVGIDP------DIYQGFAWGMGLD  325 (366)
Q Consensus       262 ----------~fPftePs~Evdv~~~~~~~~~~~~~~~~WiEi~g~Gm~~p~vl~~~g~d~------~~~~g~AfG~G~e  325 (366)
T Consensus       158 ~d~g~~~~~~~~~~a~~~~--d~E~~~p~-------~~~~~e~~s~S~~~~~q~r~~~~~~~~~~~~~~ht~~~s~~a~~  228 (235)
T cd00670         158 PFFGRGGKRGLDAGRETVV--EFELLLPL-------PGRAKETAVGSANVHLDHFGASFKIDEDGGGRAHTGCGGAGGEE  228 (235)
T ss_pred             CCCCCCCCCCCCCCCCCCE--EEEEEECC-------CCCEEEEEEEEECCCHHHCCCCCEEECCCCCEEEEECCCCCHHH
T ss_conf             1337664100025655564--69999778-------99467899930257844430253014699968999726328899


Q ss_pred             HHHH
Q ss_conf             9979
Q gi|254780317|r  326 RIAM  329 (366)
Q Consensus       326 Rlam  329 (366)
T Consensus       229 R~l~  232 (235)
T cd00670         229 RLVL  232 (235)
T ss_pred             HHHH
T ss_conf             9999