HHsearch alignment for GI: 254780317 and conserved domain: cd00673
>cd00673 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain. AlaRS is a homodimer. It is responsible for the attachment of alanine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its predicted structure and the presence of three characteristic sequence motifs.
Probab=92.39 E-value=0.13 Score=32.86 Aligned_cols=178 Identities=16% Similarity=0.222 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHCCCEEEC-CCEEECHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHH-HHHH-C
Q ss_conf 99999999999873987623-7234158898886189887733163312775056665563224467630555-5430-3
Q gi|254780317|r 119 TQVIDEVTCIFMDMGFALEE-GSDIETDYYNFAALNFPDDHPARQMHDTFFVPGIAGGKHKLLRTHTSPVQIR-VMES-Q 195 (366)
Q Consensus 119 tqvi~eI~~IF~~lGF~v~e-GPEIEtd~~NFdaLNiP~~HPARdmqDTFyl~~~~~~~~~lLRthTS~vQiR-~m~~-~ 195 (366)
T Consensus 2 ~eiR~~Fl~fF~~~gH~~vpssslv------------p~~Dp------tllF------------tnAGM~~Fkp~flG~~ 51 (232)
T cd00673 2 SEIRETFLSFFEKKGHTRVPSSPVV------------PRDDP------TLLF------------TNAGMNQFKPIFLGEV 51 (232)
T ss_pred HHHHHHHHHHHHHCCCEECCCCCCC------------CCCCC------CEEE------------EECCHHHHHHHHCCCC
T ss_conf 6899999999987898882787722------------38999------5014------------4114688899867788
Q ss_pred CCE-EEEEECCCCCCCCC------CCCCCCCCCCCCEEEECCCCCHHH-----HHHHHHHHHHHHCCCCCCEEEEEECCC
Q ss_conf 631-22541057647454------421378100200578617866899-----988999999997088866264542388
Q gi|254780317|r 196 DLP-IKVIVPGKTYRRDS------DSTHSPMFHQIEGLVVSDSATIAN-----LRWVLESFCKSFFEVSSLQMRFRPSFF 263 (366)
Q Consensus 196 ~pP-~~~~~~GrvyR~d~------D~tH~~~FhQ~egl~v~~~i~~~~-----lk~~l~~~~~~~fg~~~~~~r~rp~~f 263 (366)
T Consensus 52 ~p~~~r~~~~QkCiR~~di~nvG~t~rH~-TfFEMLG-----nfSFGdYfK~eaI~~awe~lt~~~~l~--~~rlyvTv~ 123 (232)
T cd00673 52 PPPANRLVNSQKCIRAGDIDNVGKTGRHH-TFFEMLG-----NFSFGDYFKEEAIAFAWELLTEVLGLP--KDRLYVSVF 123 (232)
T ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCCC-HHHHCCC-----CCCHHHHHHHHHHHHHHHHHHHHCCCC--CCCCEEEEE
T ss_conf 99987510000123657832467777640-2333044-----420314589999999999875123768--562426674
Q ss_pred ----------------------CCC--------------CCCCEEEEEEECCCC--EEEECCCCCEEEEECCCCCCHHHH
Q ss_conf ----------------------985--------------266103678750588--042246883489845756388899
Q gi|254780317|r 264 ----------------------PFT--------------EPSFEVDVRCSFSDG--IIKFDEGTEWMEILGCGMVDPRVL 305 (366)
Q Consensus 264 ----------------------Pft--------------ePs~Evdv~~~~~~~--~~~~~~~~~WiEi~g~Gm~~p~vl 305 (366)
T Consensus 124 ~~Dde~~~~~~~~~gi~~~~i~~~~~~dNfW~~G~~GPcGPcsEI~yd~g~~~~~~~~~~~~~~r~lEiwNlVFmqy~r~ 203 (232)
T cd00673 124 EGDDEEEAIWWWKIGLPGIRIERIGFKDNFWEMGGNGPCGPCSEIFYDRGEERDAASLPNEDDDRYLEIWNLVFMQYNRD 203 (232)
T ss_pred CCCHHHHHHHHHHCCCCHHHEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEC
T ss_conf 69779999999741998898346677666786999879987677897577777886577888998899867313752006
Q ss_pred HHCCCCCCCEEEEEEECCHHHHHHHHCCC
Q ss_conf 85698800037996313446997997389
Q gi|254780317|r 306 RGVGIDPDIYQGFAWGMGLDRIAMLKYGM 334 (366)
Q Consensus 306 ~~~g~d~~~~~g~AfG~G~eRlaml~~gi 334 (366)
T Consensus 204 ~dg~l~~Lp~k~IDTGmGlERl~~vlQgv 232 (232)
T cd00673 204 ADGTYRPLPKKIVDTGMGLERLVWVLQGV 232 (232)
T ss_pred CCCCCCCCCCCEECCCCCHHHHHHHHCCC
T ss_conf 99976508998141683799999998379