HHsearch alignment for GI: 254780317 and conserved domain: cd00770
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=97.15 E-value=0.005 Score=43.16 Aligned_cols=199 Identities=16% Similarity=0.180 Sum_probs=109.1
Q ss_pred CCCCCCCC-CHHHHHHHHHHHHHHHCCCEEECCCEEECHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 21226742-38999999999999873987623723415889888618988773316331277505666556322446763
Q gi|254780317|r 108 SPCHRGRI-HPVTQVIDEVTCIFMDMGFALEEGSDIETDYYNFAALNFPDDHPARQMHDTFFVPGIAGGKHKLLRTHTSP 186 (366)
Q Consensus 108 ~~~~~G~~-HPItqvi~eI~~IF~~lGF~v~eGPEIEtd~~NFdaLNiP~~HPARdmqDTFyl~~~~~~~~~lLRthTS~ 186 (366)
T Consensus 44 f~~l~g~ga~Le~AL~~f~~d~~~~~Gy~eV~tP~iv~~~~~~~sG~~~~-----~~e~~y~i~~----~~~~Li~-tae 113 (297)
T cd00770 44 FYYLKGDGALLERALINFALDFLTKRGFTPVIPPFLVRKEVMEGTGQLPK-----FDEQLYKVEG----EDLYLIA-TAE 113 (297)
T ss_pred EEEECCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHCCCCC-----CHHHHHCCCC----HHHHHHH-CCC
T ss_conf 79988889999999999999999987998998853013899854357876-----3565210355----0555544-056
Q ss_pred HHHHH------HHHCCCEEEEEECCCCCCCCCCC----C----CCCCCCCCCEEEECCCC----CHHHHHHHHHHHHHHH
Q ss_conf 05555------43036312254105764745442----1----37810020057861786----6899988999999997
Q gi|254780317|r 187 VQIRV------MESQDLPIKVIVPGKTYRRDSDS----T----HSPMFHQIEGLVVSDSA----TIANLRWVLESFCKSF 248 (366)
Q Consensus 187 vQiR~------m~~~~pP~~~~~~GrvyR~d~D~----t----H~~~FhQ~egl~v~~~i----~~~~lk~~l~~~~~~~ 248 (366)
T Consensus 114 ~~l~~~~~~~~~~~~dLPlr~~~~s~cfR~Eags~G~d~~GL~RvhqF~kvE~~~~c~pe~s~~~~e~~~~~~e~~l~~L 193 (297)
T cd00770 114 VPLAALHRDEILEEEELPLKYAGYSPCFRKEAGSAGRDTRGLFRVHQFEKVEQFVFTKPEESWEELEELISNAEEILQEL 193 (297)
T ss_pred CCEEEEEEEEECCHHHCCCCEEECCCHHHHCCCCCCCCCCCEEEEEECCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 66223442003177558865022463413203777755554578872110037761687889999999999999999981
Q ss_pred CCCCCCEEEEEECCC-----CCCCCCCEEEEEEECCCCEEEECCCCCEEEEECCCCCCHHHHHHCCC---CC--CC----
Q ss_conf 088866264542388-----98526610367875058804224688348984575638889985698---80--00----
Q gi|254780317|r 249 FEVSSLQMRFRPSFF-----PFTEPSFEVDVRCSFSDGIIKFDEGTEWMEILGCGMVDPRVLRGVGI---DP--DI---- 314 (366)
Q Consensus 249 fg~~~~~~r~rp~~f-----PftePs~Evdv~~~~~~~~~~~~~~~~WiEi~g~Gm~~p~vl~~~g~---d~--~~---- 314 (366)
T Consensus 194 -~-----lpyrvv~~~tgdlg~~-a~~~~DiE~W~P~-------~~~y~EvsS~Snc~DfQarRl~iry~~~~~~~~~~~ 259 (297)
T cd00770 194 -G-----LPYRVVNICTGDLGFA-AAKKYDIEAWMPG-------QGKYREISSCSNCTDFQARRLNIRYRDKKDGKKQYV 259 (297)
T ss_pred -C-----CCEEEECCCCCCCCCC-HHHEEEEEEEEHH-------HCCEEEEEECCCCHHHHHHHCCCEEECCCCCCEEEE
T ss_conf -5-----5014501246555732-2220765631054-------197688613154000666523677734899952654
Q ss_pred EEEEEEECCHHHHHHH
Q ss_conf 3799631344699799
Q gi|254780317|r 315 YQGFAWGMGLDRIAML 330 (366)
Q Consensus 315 ~~g~AfG~G~eRlaml 330 (366)
T Consensus 260 htlngt~~A~~R~l~a 275 (297)
T cd00770 260 HTLNGTALATPRTIVA 275 (297)
T ss_pred EEECCCCCHHHHHHHH
T ss_conf 8813632088889999