HHsearch alignment for GI: 254780317 and conserved domain: cd00772

>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=94.98  E-value=0.42  Score=29.10  Aligned_cols=221  Identities=15%  Similarity=0.167  Sum_probs=118.1

Q ss_pred             HHHHCCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHCCCEEECCCEEEC-HHHHHHHHCCCCCCCCCCCCCEEEEECC
Q ss_conf             54310000011232122-674238999999999999873987623723415-8898886189887733163312775056
Q gi|254780317|r   95 SSQSVDVSLPVFSSPCH-RGRIHPVTQVIDEVTCIFMDMGFALEEGSDIET-DYYNFAALNFPDDHPARQMHDTFFVPGI  172 (366)
Q Consensus        95 ~~E~iDVTLP~~~~~~~-~G~~HPItqvi~eI~~IF~~lGF~v~eGPEIEt-d~~NFdaLNiP~~HPARdmqDTFyl~~~  172 (366)
T Consensus        12 ~a~l~d~~-~~~G~~~~lP~G~~i~~ki~~~i~~e~~~~G~qev~~P~l~p~~lw~-----ksgr~~~~~~~e~~~~~~~   85 (264)
T cd00772          12 KAELADQG-PGRGIINFLPLAKAILDKIENVLDKMFKEHGAQNALFPFFILASFLE-----KEAEHDEGFSKELAVFKDA   85 (264)
T ss_pred             HHCCEECC-CCCCEEEECHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHH-----HCCCHHHCCCCCEEEEEEC
T ss_conf             63542048-98875888905999999999999999998299498125679989999-----7698444378523799734


Q ss_pred             CC---CCCCCCC-CCCCCHHH---HHHHH-CCCEEEEEECCCCCCCCCCCCC----CCCCCCCCEEEECCC-----CCHH
Q ss_conf             66---5563224-46763055---55430-3631225410576474544213----781002005786178-----6689
Q gi|254780317|r  173 AG---GKHKLLR-THTSPVQI---RVMES-QDLPIKVIVPGKTYRRDSDSTH----SPMFHQIEGLVVSDS-----ATIA  235 (366)
Q Consensus       173 ~~---~~~~lLR-thTS~vQi---R~m~~-~~pP~~~~~~GrvyR~d~D~tH----~~~FhQ~egl~v~~~-----i~~~  235 (366)
T Consensus        86 ~~~~~e~~~~L~PT~Ee~~~~~~~~~i~SyrdLPl~lyQ~~~~fR~E~r~r~GllR~REFlmkDahsf~~t~e~a~~~y~  165 (264)
T cd00772          86 GDEELEEDFALRPTLEENIGEIAAKFIKSWKDLPQHLNQIGNKFRDEIRPRFGFLRAREFIMKDGHSAHADAEEADEEFL  165 (264)
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHCCHHHHHHHHHHHCCCCCCCCCHHHEEEEEEEEEECCCCHHHHHHHHH
T ss_conf             87421235201677868999999864076655797787655786057885543323204341103532599999999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCEEEEEEC--CCCCCCCCCEEEEEEECCCCEEEECCCCCEEEEECCCCCCHHHHHH-----C
Q ss_conf             99889999999970888662645423--8898526610367875058804224688348984575638889985-----6
Q gi|254780317|r  236 NLRWVLESFCKSFFEVSSLQMRFRPS--FFPFTEPSFEVDVRCSFSDGIIKFDEGTEWMEILGCGMVDPRVLRG-----V  308 (366)
Q Consensus       236 ~lk~~l~~~~~~~fg~~~~~~r~rp~--~fPftePs~Evdv~~~~~~~~~~~~~~~~WiEi~g~Gm~~p~vl~~-----~  308 (366)
T Consensus       166 ~~~~~Y~~if~~lg~lp-~~~~~~~~g~kf~Ga~~s~ef~~~~~--~G~~---~~~ev~H~f~~g~~~s~~~~~~f~~~d  239 (264)
T cd00772         166 NMLSAYAEIARDLAAID-FIEGEADEGAKFAGASKSREFEALME--DGKA---KQAETGHIFGEGFARAFDLKAKFLDKD  239 (264)
T ss_pred             HHHHHHHHHHHHHCCCC-CEEEECCCCCCCCCCEEEEEEEEECC--CCCC---CEEEEEEECCCCCCEECCCCCEEECCC
T ss_conf             99999999999966985-16764477885688501689999878--8871---364468881578501225665788899


Q ss_pred             CCCCCCEEEEEEECCHHHHH
Q ss_conf             98800037996313446997
Q gi|254780317|r  309 GIDPDIYQGFAWGMGLDRIA  328 (366)
Q Consensus       309 g~d~~~~~g~AfG~G~eRla  328 (366)
T Consensus       240 g~~~~v~m~-syGIgitRli  258 (264)
T cd00772         240 GKEKFFEMG-CWGIGISRFI  258 (264)
T ss_pred             CCEEEEEEC-CCCCHHHHHH
T ss_conf             998225803-6778177444