HHsearch alignment for GI: 254780317 and conserved domain: cd00776
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=99.06 E-value=1.3e-09 Score=91.24 Aligned_cols=224 Identities=19% Similarity=0.300 Sum_probs=119.0
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEECCCEEECHHHHHHHHCCCCCCCCCCCCCEEEEE
Q ss_conf 66765431000001123212267423899999999999987398762372341588988861898877331633127750
Q gi|254780317|r 91 FEQISSQSVDVSLPVFSSPCHRGRIHPVTQVIDEVTCIFMDMGFALEEGSDIETDYYNFAALNFPDDHPARQMHDTFFVP 170 (366)
Q Consensus 91 ~~kl~~E~iDVTLP~~~~~~~~G~~HPItqvi~eI~~IF~~lGF~v~eGPEIEtd~~NFdaLNiP~~HPARdmqDTFyl~ 170 (366)
T Consensus 5 e~r~~~R~Ldlr~~-----~~~~~l~~Rs~i~~~iR~fl~~~gF~EVeTP~L~~~--------~~--eg~a~~f~~~~~- 68 (322)
T cd00776 5 ETLLDNRHLDLRTP-----KVQAIFRIRSEVLRAFREFLRENGFTEVHTPKITST--------DT--EGGAELFKVSYF- 68 (322)
T ss_pred HHHHCCCCEECCCH-----HHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCC--------CC--CCCCCCCCCCCC-
T ss_conf 88761641242898-----799999999999999999999889999979840078--------89--865466762105-
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEECCCCCCCCC-CCC-CCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 566655632244676305555430363122541057647454-421-378100200578617866899988999999997
Q gi|254780317|r 171 GIAGGKHKLLRTHTSPVQIRVMESQDLPIKVIVPGKTYRRDS-DST-HSPMFHQIEGLVVSDSATIANLRWVLESFCKSF 248 (366)
Q Consensus 171 ~~~~~~~~lLRthTS~vQiR~m~~~~pP~~~~~~GrvyR~d~-D~t-H~~~FhQ~egl~v~~~i~~~~lk~~l~~~~~~~ 248 (366)
T Consensus 69 ----~~~~yL~--~Spel~Kqlli~G~-~rVfei~~~FR~E~~~t~rH~pEFTmlE-~e~af~~d~~d~m~~~E~li~~i 140 (322)
T cd00776 69 ----GKPAYLA--QSPQLYKEMLIAAL-ERVYEIGPVFRAEKSNTRRHLSEFWMLE-AEMAFIEDYNEVMDLIEELIKYI 140 (322)
T ss_pred ----CCCEEEC--CCHHHHHHHHHCCC-CCEEEECCEEECCCCCCCCCHHHHHHHH-HHHHHHCCHHHHHHHHHHHHHHH
T ss_conf ----8760015--48588999975342-4438872614079998753478887652-55523328999999999999999
Q ss_pred CCCCCCE-----------------EEEEECC--CCCCC-------------CCCEEEEE--------------------E
Q ss_conf 0888662-----------------6454238--89852-------------66103678--------------------7
Q gi|254780317|r 249 FEVSSLQ-----------------MRFRPSF--FPFTE-------------PSFEVDVR--------------------C 276 (366)
Q Consensus 249 fg~~~~~-----------------~r~rp~~--fPfte-------------Ps~Evdv~--------------------~ 276 (366)
T Consensus 141 ~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ea~~~l~~~~~~~~~~~~~dl~~~~e~~l~~~~~~~p~fv~d~ 218 (322)
T cd00776 141 FKR--VLERCAKELELVNQLNRELLKPLEPFPRITYDEAIELLREKGVEEEVKWGEDLSTEHERLLGEIVKGDPVFVTDY 218 (322)
T ss_pred HHH--HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECC
T ss_conf 999--986526788998751211002479964241999999998569966877666337699999999965898899797
Q ss_pred ECCCCE--EEECCC------------CCEEEEECCC--CCCHHHH----HHCCCCCCCE------------EEEEEECCH
Q ss_conf 505880--422468------------8348984575--6388899----8569880003------------799631344
Q gi|254780317|r 277 SFSDGI--IKFDEG------------TEWMEILGCG--MVDPRVL----RGVGIDPDIY------------QGFAWGMGL 324 (366)
Q Consensus 277 ~~~~~~--~~~~~~------------~~WiEi~g~G--m~~p~vl----~~~g~d~~~~------------~g~AfG~G~ 324 (366)
T Consensus 219 P~~~~pfy~~~~~~~~~~~~rfel~~~G~~El~~g~~r~~d~~~l~~r~~~~g~~~~~~~~yl~al~~G~PP~gG~glGi 298 (322)
T cd00776 219 PKEIKPFYMKPDDDNPETVESFDLLMPGVGEIVGGSQRIHDYDELEERIKEHGLDPESFEWYLDLRKYGMPPHGGFGLGL 298 (322)
T ss_pred HHHCCCCCCCCCCCCHHHHHHHHEECCCCEEECCHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEHH
T ss_conf 44219765886688545545420012892786776664089999999999859997899999999766999972454389
Q ss_pred HHHHHHHCCCCCHHHH
Q ss_conf 6997997389705876
Q gi|254780317|r 325 DRIAMLKYGMPDVREF 340 (366)
Q Consensus 325 eRlaml~~gi~diR~~ 340 (366)
T Consensus 299 DRLvmll~g~~~Irdv 314 (322)
T cd00776 299 ERLVMWLLGLDNIREA 314 (322)
T ss_pred HHHHHHHCCCCCHHHE
T ss_conf 9999998299727605