HHsearch results for GI: 254780317 and protein with PDBid: 1c0a_A
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=99.22 E-value=1.3e-09 Score=89.61 Aligned_cols=115 Identities=21% Similarity=0.233 Sum_probs=70.6
Q ss_pred CCHHHHHHHHHHHHHHHCCCEEECCCEEECHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHH-
Q ss_conf 2389999999999998739876237234158898886189887733163312775056665563224467630555543-
Q gi|254780317|r 115 IHPVTQVIDEVTCIFMDMGFALEEGSDIETDYYNFAALNFPDDHPARQMHDTFFVPGIAGGKHKLLRTHTSPVQIRVME- 193 (366)
Q Consensus 115 ~HPItqvi~eI~~IF~~lGF~v~eGPEIEtd~~NFdaLNiP~~HPARdmqDTFyl~~~~~~~~~lLRthTS~vQiR~m~- 193 (366)
..-=++++..|+++|.+-||..++-|-+-. +.++. ||+..-..|... +...-|| .||=+-..|.
T Consensus 138 ~r~Rs~i~~~~r~~l~~~gF~EV~TP~L~~--------~~~eg--a~~~f~~~~~~~---~~~~~L~--~Spqly~q~l~ 202 (585)
T 1c0a_A 138 LKTRAKITSLVRRFMDDHGFLDIETPMLTK--------ATPEG--ARDYLVPSRVHK---GKFYALP--QSPQLFKQLLM 202 (585)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSSBC--------CCSSS--SCCCEEECSSST---TCEEECC--SCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCCCCC--------CCCCC--CCCCEEEEECCC---CCCCCCC--CCCHHHHHHHH
T ss_conf 999999999999999878998998985467--------78765--667554255487---7510278--78358889888
Q ss_pred HCCCEEEEEECCCCCCCCC-CCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 0363122541057647454-42137810020057861786689998899999999
Q gi|254780317|r 194 SQDLPIKVIVPGKTYRRDS-DSTHSPMFHQIEGLVVSDSATIANLRWVLESFCKS 247 (366)
Q Consensus 194 ~~~pP~~~~~~GrvyR~d~-D~tH~~~FhQ~egl~v~~~i~~~~lk~~l~~~~~~ 247 (366)
.... =|++.+|+|||+|. |++|.|+|.|+|--..- ++..|++..++.++++
T Consensus 203 ~~g~-~rVfeig~~FR~E~~~t~r~pEFt~le~e~a~--~~~~d~m~~~E~l~~~ 254 (585)
T 1c0a_A 203 MSGF-DRYYQIVKCFRDEDLRADRQPEFTQIDVETSF--MTAPQVREVMEALVRH 254 (585)
T ss_dssp HTTC-CEEEEEEEEECCCCCBTTBCSEEEEEEEEEES--CCHHHHHHHHHHHHHH
T ss_pred HHCC-CEEEEECCCCCCCCCCCCCCCCCCEEHHHHHH--HHHHHHHHHHHHHHHH
T ss_conf 6066-61689644212688888668643100898877--6677899999899999