HHsearch results for GI: 254780317 and protein with PDBid: 1n9w_A
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1
Probab=98.82 E-value=1.4e-07 Score=74.84 Aligned_cols=113 Identities=12% Similarity=0.050 Sum_probs=66.8
Q ss_pred CCHHHHHHHHHHHHHHHCCCEEECCCEEECHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 23899999999999987398762372341588988861898877331633127750566655632244676305555430
Q gi|254780317|r 115 IHPVTQVIDEVTCIFMDMGFALEEGSDIETDYYNFAALNFPDDHPARQMHDTFFVPGIAGGKHKLLRTHTSPVQIRVMES 194 (366)
Q Consensus 115 ~HPItqvi~eI~~IF~~lGF~v~eGPEIEtd~~NFdaLNiP~~HPARdmqDTFyl~~~~~~~~~lLRthTS~vQiR~m~~ 194 (366)
+---++++..|+++|.+.||..++-|-+-.. .+.. ..+.|..+.. +...-|| +||=.-.-|..
T Consensus 125 l~~Rs~i~~~iR~f~~~~gflEVeTP~l~~~--------~~~~-----~~~~f~~~~~--~~~~~L~--~Spel~K~l~~ 187 (422)
T 1n9w_A 125 LKVQAALVRGFRRYLDRQDFTEIFTPKVVRA--------GAEG-----GSGLFGVDYF--EKRAYLA--QSPQLYKQIMV 187 (422)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCC---------------------------------------------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCEECCCCCCCCC--------CCCC-----CCCCCCCCCC--CCCCCCC--CCHHHHHHHHH
T ss_conf 5799999999976653289671369712357--------7666-----7656787656--8884243--08799877763
Q ss_pred CCCEEEEEECCCCCCCCC--CCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 363122541057647454--4213781002005786178668999889999999
Q gi|254780317|r 195 QDLPIKVIVPGKTYRRDS--DSTHSPMFHQIEGLVVSDSATIANLRWVLESFCK 246 (366)
Q Consensus 195 ~~pP~~~~~~GrvyR~d~--D~tH~~~FhQ~egl~v~~~i~~~~lk~~l~~~~~ 246 (366)
... =|++.+|+|||++. +..|.|+|.|+|--+. -.-...++..+.+.+++
T Consensus 188 ~g~-~rvfei~~~FR~ee~~~~rh~~EFt~le~~~a-~~~d~~d~~~l~E~~~~ 239 (422)
T 1n9w_A 188 GVF-ERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMG-FIADEEDLMRLEEALLA 239 (422)
T ss_dssp HHH-SEEEEEEEC-------------CCEEEEEEEE-SCSSHHHHHHHHHHHHH
T ss_pred CCC-CCCEEECCCCCCCCCCCCCCCCHHHHHHHHHH-HHCCHHHHHHHHHHHHH
T ss_conf 143-41025533212578876456843677887652-11139888888999999