HHsearch results for GI: 254780317 and protein with PDBid: 1nnh_A
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1
Probab=99.08 E-value=1.8e-09 Score=88.59 Aligned_cols=207 Identities=19% Similarity=0.237 Sum_probs=115.3
Q ss_pred CCHHHHHHHHHHHHHHHCCCEEECCCEEECHHHHHHHHCCCCC-CCCCCCCCEEEEECCCCCCCCCCCCCCCCHHH---H
Q ss_conf 2389999999999998739876237234158898886189887-73316331277505666556322446763055---5
Q gi|254780317|r 115 IHPVTQVIDEVTCIFMDMGFALEEGSDIETDYYNFAALNFPDD-HPARQMHDTFFVPGIAGGKHKLLRTHTSPVQI---R 190 (366)
Q Consensus 115 ~HPItqvi~eI~~IF~~lGF~v~eGPEIEtd~~NFdaLNiP~~-HPARdmqDTFyl~~~~~~~~~lLRthTS~vQi---R 190 (366)
+.-=++++..|+++|.+-||..++-|-+.. ++ .|.+ .|+.+....|-++-. +.. ..=|||| |. +
T Consensus 15 l~~Rs~i~~~iR~ff~~~~f~EV~tPil~~------~~-~~~~~~~~~~~~~~~~~~~~--~~~--~~L~~Sp-ql~~k~ 82 (294)
T 1nnh_A 15 LDIQTKILEYMTDFFVKEGFKWLLPVIISP------IT-DPLWPDPAGEGMEPAEVEIY--GVK--MRLTHSM-ILHKQL 82 (294)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEECCCCEES------CC-CCCCSCTTCCCCCCCEEEET--TEE--EEECSCS-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCEEECCCCCCC------CC-CCCCCCCCCCCCCCCCCCCC--CCE--EECCCCH-HHHHHH
T ss_conf 999999999999999988999984873456------67-77677655676635635678--966--7515788-888989
Q ss_pred HHHHCCCEEEEEECCCCCCCCC-CC---CCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCC------CCCEEEEEE
Q ss_conf 5430363122541057647454-42---1378100200578617866899988999999997088------866264542
Q gi|254780317|r 191 VMESQDLPIKVIVPGKTYRRDS-DS---THSPMFHQIEGLVVSDSATIANLRWVLESFCKSFFEV------SSLQMRFRP 260 (366)
Q Consensus 191 ~m~~~~pP~~~~~~GrvyR~d~-D~---tH~~~FhQ~egl~v~~~i~~~~lk~~l~~~~~~~fg~------~~~~~r~rp 260 (366)
.|.. . --||+.+|+|||.|. ++ .|.|+|.|+|-=+.. .+..++...++.+++++|.. .++. ..
T Consensus 83 ~l~~-g-~~~vf~I~~~FR~E~~~~~~~rH~~EFtmLE~e~~~--~d~~dlm~~~e~li~~i~~~~~~~~~~~~~---~~ 155 (294)
T 1nnh_A 83 AIAM-G-LKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVER--AKMEDIMRLIERLVYGLFRKAEEWTGREFP---KT 155 (294)
T ss_dssp HHHT-T-CCEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEET--CCHHHHHHHHHHHHHHHHHHHHHHHSSCCC---CC
T ss_pred HHHH-H-CCCCEEEECEECCCCCCCCCCCCCCCCCCCEEEEEC--CHHHHHHHHHHHHHHHHHHHHHHHCCCCCC---CC
T ss_conf 9873-0-256446504564787888877554001465059840--019899999999999999999986002056---65
Q ss_pred CCCCCCC-------------CCCEEEEEEECC-----------CCE---EEECCCCCEEEEECCCCC--CHHHH----HH
Q ss_conf 3889852-------------661036787505-----------880---422468834898457563--88899----85
Q gi|254780317|r 261 SFFPFTE-------------PSFEVDVRCSFS-----------DGI---IKFDEGTEWMEILGCGMV--DPRVL----RG 307 (366)
Q Consensus 261 ~~fPfte-------------Ps~Evdv~~~~~-----------~~~---~~~~~~~~WiEi~g~Gm~--~p~vl----~~ 307 (366)
..||..+ .+.+....++.+ .+. ++.----+.+|+.+++.- +|+.| +.
T Consensus 156 ~~~~r~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~g~El~~g~~r~~d~~~l~~r~~~ 235 (294)
T 1nnh_A 156 KRFEVFEYSEVLEEFGSDEKASQEMEEPFWIINIPREFYDREVDGFWRNYDLILPYGYGEVASGGEREWEYEKIVAKIRK 235 (294)
T ss_dssp SSCEEEEHHHHHHHTSSHHHHHHHCSSCEEEECCCCCTTBCEETTEECEEEEEETTTTEEEEEEEEBCCCHHHHHHHHHH
T ss_pred CCCEEEEHHHHHHHCCCCCCHHHCCCCCEEECCCCCEEECCCCCCCEEEEEEEECCCCEECCCCCCCCCCHHHHHHHHHH
T ss_conf 65121127775443165421000245760431565146403456732521048522886046622234899999999998
Q ss_pred CCCCCCCE-------------EEEEEECCHHHHHHHHCCCCCHHHH
Q ss_conf 69880003-------------7996313446997997389705876
Q gi|254780317|r 308 VGIDPDIY-------------QGFAWGMGLDRIAMLKYGMPDVREF 340 (366)
Q Consensus 308 ~g~d~~~~-------------~g~AfG~G~eRlaml~~gi~diR~~ 340 (366)
.|+|++.| ..-.||+|+|||+|+..|.++||+-
T Consensus 236 ~g~~~~~~~~yl~a~~~G~~Pp~~G~glGidRL~m~l~g~~~Irev 281 (294)
T 1nnh_A 236 AGLNEDSFRPYLEIAKAGKLKPSAGAGIGVERLVRFIVGAKHIAEV 281 (294)
T ss_dssp TTCCGGGGHHHHHHHHTTCCCCEEEEEEEHHHHHHHHHTCSSGGGG
T ss_pred CCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHCCCCHHHE
T ss_conf 5989899999999997199999768867699999998289847706