HHsearch results for GI: 254780317 and protein with PDBid: 1qf6_A
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, zinc, mRNA, aminoacylation, translational regulation, protein/RNA, ligase/RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=96.44 E-value=0.07 Score=33.16 Aligned_cols=134 Identities=12% Similarity=0.211 Sum_probs=81.3
Q ss_pred CHHHHHHHHHHHHHHHCCCEEECCCEEEC-HHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 38999999999999873987623723415-88988861898877331633127750566655632244676305555430
Q gi|254780317|r 116 HPVTQVIDEVTCIFMDMGFALEEGSDIET-DYYNFAALNFPDDHPARQMHDTFFVPGIAGGKHKLLRTHTSPVQIRVMES 194 (366)
Q Consensus 116 HPItqvi~eI~~IF~~lGF~v~eGPEIEt-d~~NFdaLNiP~~HPARdmqDTFyl~~~~~~~~~lLRthTS~vQiR~m~~ 194 (366)
-....+.+-|++.+.+.||+.+.-|-++. +.|.=. .|=-- ..+.+|.... .+....||.-+.+.-++.+.+
T Consensus 272 ~i~~~le~~ir~~~~~~Gy~EV~tP~l~~~eLw~~s------g~~d~-~~e~m~~~~~-~~~~~~L~P~~e~~~~~~~~~ 343 (642)
T 1qf6_A 272 TIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKT------GHWDN-YKDAMFTTSS-ENREYCIKPMNCPGHVQIFNQ 343 (642)
T ss_dssp HHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHH------SHHHH-HGGGCEEEEE-TTEEEEECSSSHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHC------CCCCC-CCCCEEEEEC-CCCCEEECCCCCCHHHHHHHH
T ss_conf 999999999999999769899862546765677547------62222-2330787622-564256547886179999985
Q ss_pred C-----CCEEEEEECCCCCCCCC-CC----CCCCCCCCCCEEEECCCCCHH----HHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 3-----63122541057647454-42----137810020057861786689----99889999999970888662645
Q gi|254780317|r 195 Q-----DLPIKVIVPGKTYRRDS-DS----THSPMFHQIEGLVVSDSATIA----NLRWVLESFCKSFFEVSSLQMRF 258 (366)
Q Consensus 195 ~-----~pP~~~~~~GrvyR~d~-D~----tH~~~FhQ~egl~v~~~i~~~----~lk~~l~~~~~~~fg~~~~~~r~ 258 (366)
+ +.|+|+.-.|.|||.|. -+ ...-+|+|-++-+.+.+-..+ ........+++. ||-+++.+++
T Consensus 344 ~~~SyrdLPlrlyq~g~~fR~E~~~~~~Gl~R~ReF~q~Da~~f~~~~~~~~e~~~~~~~~~~i~~~-~Gl~~~~v~l 420 (642)
T 1qf6_A 344 GLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCIRLVYDMYST-FGFEKIVVKL 420 (642)
T ss_dssp SCEEGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHGG-GTCCCCEEEE
T ss_pred CCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEECCEEEEECCHHHHHHHHHHHHHHHHHHHH-CCCCEEEEEE
T ss_conf 0123244785899972333688675654532011202545479955624599999999999999998-1995589995