HHsearch results for GI: 254780317 and protein with PDBid: 2cja_A
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=97.59 E-value=0.00061 Score=48.20 Aligned_cols=204 Identities=15% Similarity=0.219 Sum_probs=97.8
Q ss_pred CH-HHHHHHHHHHHH-----HHCCCEEECCCEEECHHHHHHHHCCCCCCCCCCCCCEEEEECCC----------------
Q ss_conf 38-999999999999-----87398762372341588988861898877331633127750566----------------
Q gi|254780317|r 116 HP-VTQVIDEVTCIF-----MDMGFALEEGSDIETDYYNFAALNFPDDHPARQMHDTFFVPGIA---------------- 173 (366)
Q Consensus 116 HP-Itqvi~eI~~IF-----~~lGF~v~eGPEIEtd~~NFdaLNiP~~HPARdmqDTFyl~~~~---------------- 173 (366)
+| ...+.+.+.+++ ...||+.+..|.+-..-.=..+=..|. -.++-||+.+..
T Consensus 227 ~p~g~~L~raLe~~~~e~~~~k~G~~ev~~P~li~~el~~~sGh~~~-----f~~~m~~V~~~~~~~~~~~e~~~~~~~~ 301 (522)
T 2cja_A 227 GPQSARIFRTFEKIVLEELLEPLGYREMIFPKLVTWEVWMKSGHAKG-----VYPEIYYVCPPQTRDPDYWEEVADYYKV 301 (522)
T ss_dssp CHHHHHHHHHHHHHHHHHTHHHHTCEECBCCSEEEHHHHHHHTGGGT-----CGGGCCEEECBSCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCCCC-----CCHHHEEECCCCCCCCCHHHHHHHHHCC
T ss_conf 66799999999999999988863987987886337999954788566-----7464356325665541011122111001
Q ss_pred -------------CCCCCCCC-CCCCCHHH----HHHHHCCCEEEEEECCC-CCCCCCCCCC----CCCCCCCCEEEECC
Q ss_conf -------------65563224-46763055----55430363122541057-6474544213----78100200578617
Q gi|254780317|r 174 -------------GGKHKLLR-THTSPVQI----RVMESQDLPIKVIVPGK-TYRRDSDSTH----SPMFHQIEGLVVSD 230 (366)
Q Consensus 174 -------------~~~~~lLR-thTS~vQi----R~m~~~~pP~~~~~~Gr-vyR~d~D~tH----~~~FhQ~egl~v~~ 230 (366)
.+++..|+ |++.++.. ..+..++.|+|++..+. |||.+.-++| .++|+|+|..+++.
T Consensus 302 ~~e~~~~~~~~~~~~~~y~L~Pt~c~~~~~~~~~~~~s~~dLPlk~~~~s~~~fR~E~g~~~Gl~Rv~eF~~~E~~~~~t 381 (522)
T 2cja_A 302 THEVPTKLIKEKIAEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGTSHRYESGGIHGIERVDEFHRIEIVWIGT 381 (522)
T ss_dssp HSSCCHHHHHHHBCCCCEEECSSSSGGGGGGTTTCEECGGGCSEEEEECSSEEECCCSSSCCCTTSCSEEEEEEEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCCCHHHHHCCCEEEEECCCCCCCCCEEEEEEEEEEEEEEC
T ss_conf 23343211101145665666057719999997186357000248887404026874577877550246778643999956
Q ss_pred CC-CHHHHHHHHHHHHHHHCC-CCCCEEEEEECCCCCC---------CCC--CEEEEEEECCCCEEEECCCCCEEEEECC
Q ss_conf 86-689998899999999708-8866264542388985---------266--1036787505880422468834898457
Q gi|254780317|r 231 SA-TIANLRWVLESFCKSFFE-VSSLQMRFRPSFFPFT---------EPS--FEVDVRCSFSDGIIKFDEGTEWMEILGC 297 (366)
Q Consensus 231 ~i-~~~~lk~~l~~~~~~~fg-~~~~~~r~rp~~fPft---------ePs--~Evdv~~~~~~~~~~~~~~~~WiEi~g~ 297 (366)
.- +......+++ ++..+|+ .-++..|---+--||. +.+ ...|+..+.+. ....+.|+||+.|
T Consensus 382 ~e~~~e~~~~~l~-~~~~if~~~L~L~~r~v~~~~~~~~~~~~~~~~~~~~~~~yd~E~~lP~----~~~~~k~~ev~si 456 (522)
T 2cja_A 382 KEEVLKCAEELHD-RYMHIFNDILDIEWRKARVTPWFMAQEGLLGLAEENTVGTTDYEACLPY----RGPDGEWLEFQNV 456 (522)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHTSCCCEEEEEC----------------CCCEEEEEEECCGG----GCTTCCCEEEEEE
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHCCCCCCCCEEEEECC----CCCCCCEEEEEEE
T ss_conf 8889999999999-9999999970984599325654456655511233562124023885425----6778871899866
Q ss_pred CCCCHHHHHHCCCCCC----CEEEEEEECCHHHHHHH
Q ss_conf 5638889985698800----03799631344699799
Q gi|254780317|r 298 GMVDPRVLRGVGIDPD----IYQGFAWGMGLDRIAML 330 (366)
Q Consensus 298 Gm~~p~vl~~~g~d~~----~~~g~AfG~G~eRlaml 330 (366)
=...-.--+..+|+-. .++| .+|+||||++..
T Consensus 457 ~~~gd~~skrf~ik~~~~~~v~~~-c~GiGleR~i~a 492 (522)
T 2cja_A 457 SINGDKYPKGFNVKLQSGDELWSG-CSGVGLERWAAV 492 (522)
T ss_dssp EECTTHHHHHHTCEETTCCCEEEE-EEEEEHHHHHHH
T ss_pred CCCCCCCCHHCCCCCCCCCEEEEE-CCCHHHHHHHHH
T ss_conf 264342637309738999989993-767299999999