HHsearch results for GI: 254780317 and protein with PDBid: 2dq3_A
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus VF5}
Probab=98.14 E-value=0.00022 Score=51.45 Aligned_cols=188 Identities=15% Similarity=0.198 Sum_probs=118.6
Q ss_pred HHHHHHHHHHHHCCCEEECCCEEECHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHH-----
Q ss_conf 999999999987398762372341588988861898877331633127750566655632244676305555430-----
Q gi|254780317|r 120 QVIDEVTCIFMDMGFALEEGSDIETDYYNFAALNFPDDHPARQMHDTFFVPGIAGGKHKLLRTHTSPVQIRVMES----- 194 (366)
Q Consensus 120 qvi~eI~~IF~~lGF~v~eGPEIEtd~~NFdaLNiP~~HPARdmqDTFyl~~~~~~~~~lLRthTS~vQiR~m~~----- 194 (366)
-.++-+.+....-||+.+.-|.+-...--+.+=..|.. ..|.|++++ ++.-|. =||-|.+-.|-+
T Consensus 177 ALi~y~ld~~~~~Gy~~v~~P~lv~~~~~~gtG~lpkf-----~e~~y~~~~----~~l~Li-~TaEv~l~~~~~~~~~~ 246 (425)
T 2dq3_A 177 ALINFMLDLHTKKGYKEICPPHLVKPEILIGTGQLPKF-----EEDLYKCER----DNLYLI-PTAEVPLTNLYREEILK 246 (425)
T ss_dssp HHHHHHHHHHHHTTCEEEECCSEECHHHHHHHSCTTTT-----GGGSCBCTT----TCCEEC-SSTHHHHHGGGTTEEEE
T ss_pred HHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHCCCCCC-----HHHHHCCCC----CCEEEC-CCCCCCHHHHHCCEEEC
T ss_conf 99999999998779877438376689998641567424-----565301268----861641-44565088773350741
Q ss_pred -CCCEEEEEECCCCCCCCCCC----C----CCCCCCCCCEEEECC-CCC---HHHHHHHHHHHHHHHCCCCCCEEEEEEC
Q ss_conf -36312254105764745442----1----378100200578617-866---8999889999999970888662645423
Q gi|254780317|r 195 -QDLPIKVIVPGKTYRRDSDS----T----HSPMFHQIEGLVVSD-SAT---IANLRWVLESFCKSFFEVSSLQMRFRPS 261 (366)
Q Consensus 195 -~~pP~~~~~~GrvyR~d~D~----t----H~~~FhQ~egl~v~~-~i~---~~~lk~~l~~~~~~~fg~~~~~~r~rp~ 261 (366)
...|+|+++.++|||++.-+ | +.|+|.++|.+++-+ +-+ +..+....+.+++.+ | +-||--
T Consensus 247 ~~~LP~r~~~~s~cfR~Eags~g~d~~Gl~RvhqF~kve~~~~~~~~~s~~~~~~~~~~~~~~~~~L-~-----l~~rvv 320 (425)
T 2dq3_A 247 EENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVKIVHPDTSYDELEKLVKDAEEVLQLL-G-----LPYRVV 320 (425)
T ss_dssp TTTCCEEEEEEEEEECCCCSCCSSSCSSSSSCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHH-T-----CCEEEE
T ss_pred HHHCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHC-C-----CCCEEE
T ss_conf 7548840345378778665545767775154321002324664173358999999999999999971-6-----870899
Q ss_pred CCCCCCCCC----EEEEEEECCCCEEEECCCCCEEEEECCCCCCHHHHHHCCC---CCC------CEEEEEEECCHHHHH
Q ss_conf 889852661----0367875058804224688348984575638889985698---800------037996313446997
Q gi|254780317|r 262 FFPFTEPSF----EVDVRCSFSDGIIKFDEGTEWMEILGCGMVDPRVLRGVGI---DPD------IYQGFAWGMGLDRIA 328 (366)
Q Consensus 262 ~fPftePs~----Evdv~~~~~~~~~~~~~~~~WiEi~g~Gm~~p~vl~~~g~---d~~------~~~g~AfG~G~eRla 328 (366)
.-|--+.++ -.|+..|..+ .+.|.||.-|--..-=.-+-.+| +++ .++--+=++.+.|+.
T Consensus 321 ~~~~~dlg~~~~~~~DiE~W~P~-------~~~y~Ev~S~Snc~DfqsrRl~iry~~~~~~~~~~~htlngt~~a~~R~l 393 (425)
T 2dq3_A 321 ELCTGDLGFSAAKTYDIEVWFPS-------QNKYREISSCSNCEDFQARRMNTRFKDSKTGKNRFVHTLNGSGLAVGRTL 393 (425)
T ss_dssp ECCTTTCCTTCSEEEEEEEEEGG-------GTEEEEEEEEEECTTHHHHHHTEEEECTTTCSEEECEEEEEEEEEHHHHH
T ss_pred EECCCCCCCCCCEEECEEEEECC-------CCCEEEEEEECCHHHHHHHHCCCEEECCCCCCEEEEEEEECCCCHHHHHH
T ss_conf 96788888764257340777230-------08478898875525566654688766589995155677477620887899
Q ss_pred HH
Q ss_conf 99
Q gi|254780317|r 329 ML 330 (366)
Q Consensus 329 ml 330 (366)
.-
T Consensus 394 ~a 395 (425)
T 2dq3_A 394 AA 395 (425)
T ss_dssp HH
T ss_pred HH
T ss_conf 99