HHsearch results for GI: 254780317 and protein with PDBid: 2dq3_A

>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus VF5}
Probab=98.14  E-value=0.00022  Score=51.45  Aligned_cols=188  Identities=15%  Similarity=0.198  Sum_probs=118.6

Q ss_pred             HHHHHHHHHHHHCCCEEECCCEEECHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHH-----
Q ss_conf             999999999987398762372341588988861898877331633127750566655632244676305555430-----
Q gi|254780317|r  120 QVIDEVTCIFMDMGFALEEGSDIETDYYNFAALNFPDDHPARQMHDTFFVPGIAGGKHKLLRTHTSPVQIRVMES-----  194 (366)
Q Consensus       120 qvi~eI~~IF~~lGF~v~eGPEIEtd~~NFdaLNiP~~HPARdmqDTFyl~~~~~~~~~lLRthTS~vQiR~m~~-----  194 (366)
                      -.++-+.+....-||+.+.-|.+-...--+.+=..|..     ..|.|++++    ++.-|. =||-|.+-.|-+     
T Consensus       177 ALi~y~ld~~~~~Gy~~v~~P~lv~~~~~~gtG~lpkf-----~e~~y~~~~----~~l~Li-~TaEv~l~~~~~~~~~~  246 (425)
T 2dq3_A          177 ALINFMLDLHTKKGYKEICPPHLVKPEILIGTGQLPKF-----EEDLYKCER----DNLYLI-PTAEVPLTNLYREEILK  246 (425)
T ss_dssp             HHHHHHHHHHHHTTCEEEECCSEECHHHHHHHSCTTTT-----GGGSCBCTT----TCCEEC-SSTHHHHHGGGTTEEEE
T ss_pred             HHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHCCCCCC-----HHHHHCCCC----CCEEEC-CCCCCCHHHHHCCEEEC
T ss_conf             99999999998779877438376689998641567424-----565301268----861641-44565088773350741


Q ss_pred             -CCCEEEEEECCCCCCCCCCC----C----CCCCCCCCCEEEECC-CCC---HHHHHHHHHHHHHHHCCCCCCEEEEEEC
Q ss_conf             -36312254105764745442----1----378100200578617-866---8999889999999970888662645423
Q gi|254780317|r  195 -QDLPIKVIVPGKTYRRDSDS----T----HSPMFHQIEGLVVSD-SAT---IANLRWVLESFCKSFFEVSSLQMRFRPS  261 (366)
Q Consensus       195 -~~pP~~~~~~GrvyR~d~D~----t----H~~~FhQ~egl~v~~-~i~---~~~lk~~l~~~~~~~fg~~~~~~r~rp~  261 (366)
                       ...|+|+++.++|||++.-+    |    +.|+|.++|.+++-+ +-+   +..+....+.+++.+ |     +-||--
T Consensus       247 ~~~LP~r~~~~s~cfR~Eags~g~d~~Gl~RvhqF~kve~~~~~~~~~s~~~~~~~~~~~~~~~~~L-~-----l~~rvv  320 (425)
T 2dq3_A          247 EENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVKIVHPDTSYDELEKLVKDAEEVLQLL-G-----LPYRVV  320 (425)
T ss_dssp             TTTCCEEEEEEEEEECCCCSCCSSSCSSSSSCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHH-T-----CCEEEE
T ss_pred             HHHCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHC-C-----CCCEEE
T ss_conf             7548840345378778665545767775154321002324664173358999999999999999971-6-----870899


Q ss_pred             CCCCCCCCC----EEEEEEECCCCEEEECCCCCEEEEECCCCCCHHHHHHCCC---CCC------CEEEEEEECCHHHHH
Q ss_conf             889852661----0367875058804224688348984575638889985698---800------037996313446997
Q gi|254780317|r  262 FFPFTEPSF----EVDVRCSFSDGIIKFDEGTEWMEILGCGMVDPRVLRGVGI---DPD------IYQGFAWGMGLDRIA  328 (366)
Q Consensus       262 ~fPftePs~----Evdv~~~~~~~~~~~~~~~~WiEi~g~Gm~~p~vl~~~g~---d~~------~~~g~AfG~G~eRla  328 (366)
                      .-|--+.++    -.|+..|..+       .+.|.||.-|--..-=.-+-.+|   +++      .++--+=++.+.|+.
T Consensus       321 ~~~~~dlg~~~~~~~DiE~W~P~-------~~~y~Ev~S~Snc~DfqsrRl~iry~~~~~~~~~~~htlngt~~a~~R~l  393 (425)
T 2dq3_A          321 ELCTGDLGFSAAKTYDIEVWFPS-------QNKYREISSCSNCEDFQARRMNTRFKDSKTGKNRFVHTLNGSGLAVGRTL  393 (425)
T ss_dssp             ECCTTTCCTTCSEEEEEEEEEGG-------GTEEEEEEEEEECTTHHHHHHTEEEECTTTCSEEECEEEEEEEEEHHHHH
T ss_pred             EECCCCCCCCCCEEECEEEEECC-------CCCEEEEEEECCHHHHHHHHCCCEEECCCCCCEEEEEEEECCCCHHHHHH
T ss_conf             96788888764257340777230-------08478898875525566654688766589995155677477620887899


Q ss_pred             HH
Q ss_conf             99
Q gi|254780317|r  329 ML  330 (366)
Q Consensus       329 ml  330 (366)
                      .-
T Consensus       394 ~a  395 (425)
T 2dq3_A          394 AA  395 (425)
T ss_dssp             HH
T ss_pred             HH
T ss_conf             99